RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15388
         (217 letters)



>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 127

 Score =  154 bits (391), Expect = 5e-49
 Identities = 68/125 (54%), Positives = 91/125 (72%)

Query: 2   FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFF 61
            LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   F
Sbjct: 2   VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTF 61

Query: 62  HYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKK 121
           HY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+K
Sbjct: 62  HYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQK 121

Query: 122 LRKSF 126
            +K +
Sbjct: 122 TKKLY 126


>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 140

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 4   LTMIARVRDG----LILSAS--MQDDEYSERSTL-EYQN-QAKQLFRKLNLNSPAKLSIE 55
           +  I   R G    L LS    +    + ERS++ ++    A+ +  +       + SIE
Sbjct: 3   IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGE--RQSIE 60

Query: 56  TGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQ----FEQCTRPY 110
            GNY  H Y    G+C + + +K +  + AY+ L  +  E+   +  +      +     
Sbjct: 61  EGNYIGHVYARSEGICGVLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDAL 120

Query: 111 AFVEFDSSIKK 121
              + D+ I K
Sbjct: 121 KMKQLDTYISK 131


>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4,
           DNA-binding domain {Thale cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 81

 Score = 27.1 bits (60), Expect = 0.51
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 82  KVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRR 133
           KV   + ++ S+   G      +QC+R +   EFD + +  R+       RR
Sbjct: 24  KVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 75


>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7,
           DNA-binding domain {Thale cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 86

 Score = 24.4 bits (53), Expect = 5.7
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 105 QCTRPYAFVEFDSSIKKLRKSFTDTRVRR 133
           QC + +   +FD   +  R+       RR
Sbjct: 47  QCGKFHLLPDFDEGKRSCRRKLERHNNRR 75


>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId:
          562]}
          Length = 118

 Score = 24.5 bits (53), Expect = 6.4
 Identities = 10/33 (30%), Positives = 12/33 (36%)

Query: 49 PAKLSIETGNYFFHYLIDRGVCFLALCEKTFST 81
          P  L IET       LI +         + FST
Sbjct: 8  PLSLGIETMGGVMTTLIAKNTTIPTKHSQVFST 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 763,493
Number of extensions: 33690
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 6
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)