BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15389
(864 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/446 (93%), Positives = 423/446 (94%), Gaps = 2/446 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQP
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSVEGEGE 446
EARED+AALEKDYEEVG+DS E E E
Sbjct: 420 EAREDMAALEKDYEEVGIDSYEDEDE 445
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/370 (94%), Positives = 357/370 (96%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/441 (93%), Positives = 421/441 (95%), Gaps = 2/441 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSV 441
EARED+AALEKDYEEVG+DSV
Sbjct: 420 EAREDMAALEKDYEEVGVDSV 440
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/370 (94%), Positives = 357/370 (96%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/441 (93%), Positives = 420/441 (95%), Gaps = 2/441 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQP
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSV 441
EARED+AALEKDYEEVG+DSV
Sbjct: 420 EAREDMAALEKDYEEVGVDSV 440
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/370 (94%), Positives = 356/370 (96%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/441 (93%), Positives = 420/441 (95%), Gaps = 2/441 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQP
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSV 441
EARED+AALEKDYEEVG+DSV
Sbjct: 420 EAREDMAALEKDYEEVGVDSV 440
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/370 (94%), Positives = 356/370 (96%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/441 (93%), Positives = 420/441 (95%), Gaps = 2/441 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+P
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSV 441
EARED+AALEKDYEEVG+DSV
Sbjct: 420 EAREDMAALEKDYEEVGVDSV 440
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/370 (94%), Positives = 356/370 (96%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/441 (93%), Positives = 419/441 (95%), Gaps = 2/441 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+P
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSV 441
EARED+AALEKDYEEVG+DSV
Sbjct: 420 EAREDMAALEKDYEEVGVDSV 440
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/370 (94%), Positives = 355/370 (95%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/440 (92%), Positives = 418/440 (95%), Gaps = 2/440 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DR+RKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+ QIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDS 440
EARED+AALEKDYEEVG DS
Sbjct: 420 EAREDMAALEKDYEEVGADS 439
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/370 (93%), Positives = 356/370 (96%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 VRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+ QIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/441 (93%), Positives = 419/441 (95%), Gaps = 2/441 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+P
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSV 441
EARED+AALEKDYEEVG+DSV
Sbjct: 420 EAREDMAALEKDYEEVGVDSV 440
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/370 (94%), Positives = 355/370 (95%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/441 (93%), Positives = 419/441 (95%), Gaps = 2/441 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+P
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSV 441
EARED+AALEKDYEEVG+DSV
Sbjct: 420 EAREDMAALEKDYEEVGVDSV 440
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/370 (94%), Positives = 355/370 (95%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/441 (93%), Positives = 419/441 (95%), Gaps = 2/441 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+P
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSV 441
EARED+AALEKDYEEVG+DSV
Sbjct: 420 EAREDMAALEKDYEEVGVDSV 440
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/370 (94%), Positives = 355/370 (95%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/438 (93%), Positives = 417/438 (95%), Gaps = 2/438 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQP
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGM 438
EARED+AALEKDYEEVG+
Sbjct: 420 EAREDMAALEKDYEEVGV 437
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/370 (94%), Positives = 356/370 (96%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/447 (71%), Positives = 366/447 (81%), Gaps = 3/447 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI-GGGDDSFNTFFSETGAGK 59
RE ISI+VGQAG QIGNACWELY LEHGI+PDG + + GG++ F+TFF ETG GK
Sbjct: 2 REVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGK 61
Query: 60 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLV 119
VPRA++VDLEP V+DEVR G Y+ LFHPEQLI+GKEDAA GHYT+G+EI+ V
Sbjct: 62 FVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYAR--GHYTVGREILGDV 119
Query: 120 LDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVS 179
LDRIRKLADQC GLQGFL H LL+E LS +YGKKSKLEFA+YPAPQVS
Sbjct: 120 LDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVS 179
Query: 180 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 239
T+VVEPYN++LTTHTTLEH+DC FMVDNEAIYD+C+RNLDI RP++ NLN LI Q+VSS+
Sbjct: 180 TSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSV 239
Query: 240 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 299
TASLRFDG+LNVDL EFQTNLVPYPRIHFPLV+Y+PV+S KA+HE SV+EITNACFEP
Sbjct: 240 TASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEP 299
Query: 300 ANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQ 359
NQMVKCDPR GKYMA C+LYRGDVV +DV A+ +K K+T+Q VDWCPTGFK+GI Y+
Sbjct: 300 GNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYE 359
Query: 360 PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 419
PPT P LA V RAVCMLSNTT+IAEAW R+D KFDLMYAKRAFVHWYVGEGMEEGEF
Sbjct: 360 PPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEF 419
Query: 420 SEAREDLAALEKDYEEVGMDSVEGEGE 446
+EAREDLAALE+DY EVG DS E E
Sbjct: 420 TEAREDLAALERDYIEVGADSYAEEEE 446
Score = 561 bits (1445), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/371 (70%), Positives = 306/371 (82%), Gaps = 1/371 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI-GGGDDSFNTFFSETGAGK 552
RE ISI+VGQAG QIGNACWELY LEHGI+PDG + + GG++ F+TFF ETG GK
Sbjct: 2 REVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGK 61
Query: 553 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 612
VPRA++VDLEP V+DEVR G Y+ LFHPEQLI+GKEDAANNYARGHYT+G+EI+ VLD
Sbjct: 62 FVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLD 121
Query: 613 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTA 672
RIRKLADQC GLQGFL H LL+E LS +YGKKSKLEFA+YPAPQVST+
Sbjct: 122 RIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTS 181
Query: 673 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 732
VVEPYN++LTTHTTLEH+DC FMVDNEAIYD+C+RNLDI RP++ NLN LI Q+VSS+TA
Sbjct: 182 VVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTA 241
Query: 733 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN 792
SLRFDG+LNVDL EFQTNLVPYPRIHFPLV+Y+PV+S KA+HE SV+EITNACFEP N
Sbjct: 242 SLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGN 301
Query: 793 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
QMVKCDPR GKYMA C+LYRGDVV +DV A+ +K K+T+Q VDWCPTGFK+GI Y+PP
Sbjct: 302 QMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPP 361
Query: 853 TVVPGGDLAKM 863
T P LA +
Sbjct: 362 TATPNSQLATV 372
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 338 bits (868), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 249/435 (57%), Gaps = 12/435 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A + GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 298 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAREDLAALEKDYEE 435
EA ++ L +Y++
Sbjct: 410 EAESNMNDLVSEYQQ 424
Score = 301 bits (772), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 338 bits (868), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 163/435 (37%), Positives = 249/435 (57%), Gaps = 12/435 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A + GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 298 NMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 P--------RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAREDLAALEKDYEE 435
EA ++ L +Y++
Sbjct: 410 EAESNMNDLVSEYQQ 424
Score = 302 bits (773), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 142/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 338 bits (867), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 249/435 (57%), Gaps = 12/435 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A + GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 298 NMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAREDLAALEKDYEE 435
EA ++ L +Y++
Sbjct: 410 EAESNMNDLVSEYQQ 424
Score = 301 bits (772), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 338 bits (867), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 249/435 (57%), Gaps = 12/435 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A + GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 298 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAREDLAALEKDYEE 435
EA ++ L +Y++
Sbjct: 410 EAESNMNDLVSEYQQ 424
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 338 bits (866), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 249/435 (57%), Gaps = 12/435 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A + GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 298 NMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAREDLAALEKDYEE 435
EA ++ L +Y++
Sbjct: 410 EAESNMNDLVSEYQQ 424
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 338 bits (866), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 249/435 (57%), Gaps = 12/435 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A + GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 298 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAREDLAALEKDYEE 435
EA ++ L +Y++
Sbjct: 410 EAESNMNDLVSEYQQ 424
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 338 bits (866), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 249/435 (57%), Gaps = 12/435 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A + GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 298 NMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAREDLAALEKDYEE 435
EA ++ L +Y++
Sbjct: 410 EAESNMNDLVSEYQQ 424
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 338 bits (866), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 249/435 (57%), Gaps = 12/435 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A + GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 298 NMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAREDLAALEKDYEE 435
EA ++ L +Y++
Sbjct: 410 EAESNMNDLVSEYQQ 424
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 338 bits (866), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 249/435 (57%), Gaps = 12/435 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A + GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 298 NMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAREDLAALEKDYEE 435
EA ++ L +Y++
Sbjct: 410 EAESNMNDLVSEYQQ 424
Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + H LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 335 bits (860), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 171/450 (38%), Positives = 254/450 (56%), Gaps = 20/450 (4%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDD----SFNTFFSETG 56
RE I I GQ G QIG A WE C EHG+ +G T G DD N +F+E
Sbjct: 2 REIIHISTGQCGNQIGAAFWETICGEHGLDFNG------TYHGHDDIQKERLNVYFNEAS 55
Query: 57 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIV 116
+GK VPR++ VDLEP +D VR LF P+ I G+ A + GHYT G E+V
Sbjct: 56 SGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAK--GHYTEGAELV 113
Query: 117 DLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAP 176
D V+D IR+ A+ C LQGF I H LL+ ++ ++ + F++ P+P
Sbjct: 114 DSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSP 173
Query: 177 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 236
+ S VEPYN+ L+ H +EHSD F +DNEA+YDIC+R L + +P+Y +LN L+ ++
Sbjct: 174 KRSDTRVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVM 233
Query: 237 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 296
S +T SLR+ G LN DL + NLVP+PR+HF +V YAP+ + L+V E+T
Sbjct: 234 SGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQM 293
Query: 297 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 356
F+ N M DPR+G+Y+ +RG V K+V + +++K + FV+W P + +
Sbjct: 294 FDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAV 353
Query: 357 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 416
+V P G + A ++N+T+I E + R+ +F M+ ++AF+HWY EGM+E
Sbjct: 354 ----CSVAPQG----LDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDE 405
Query: 417 GEFSEAREDLAALEKDYEEVGMDSVEGEGE 446
EFSEA ++ L +Y++ +VE + E
Sbjct: 406 LEFSEAESNMNDLVSEYQQYQEATVEDDEE 435
Score = 295 bits (754), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 206/358 (57%), Gaps = 10/358 (2%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDD----SFNTFFSETG 549
RE I I GQ G QIG A WE C EHG+ +G T G DD N +F+E
Sbjct: 2 REIIHISTGQCGNQIGAAFWETICGEHGLDFNG------TYHGHDDIQKERLNVYFNEAS 55
Query: 550 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 609
+GK VPR++ VDLEP +D VR LF P+ I G+ A N +A+GHYT G E+VD
Sbjct: 56 SGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDS 115
Query: 610 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 669
V+D IR+ A+ C LQGF I H LL+ ++ ++ + F++ P+P+
Sbjct: 116 VMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKR 175
Query: 670 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 729
S VEPYN+ L+ H +EHSD F +DNEA+YDIC+R L + +P+Y +LN L+ ++S
Sbjct: 176 SDTRVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSG 235
Query: 730 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 789
+T SLR+ G LN DL + NLVP+PR+HF +V YAP+ + L+V E+T F+
Sbjct: 236 VTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFD 295
Query: 790 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 847
N M DPR+G+Y+ +RG V K+V + +++K + FV+W P + +
Sbjct: 296 AKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAV 353
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 284 bits (726), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 251/458 (54%), Gaps = 23/458 (5%)
Query: 4 ISIHVGQAGVQIGNACWELYCLEHGIQP-DGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 62
I + +GQAG QI + W+ CLEHGI P GQ G SF + E+ +G +VP
Sbjct: 7 IVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVP 66
Query: 63 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYS-GHYTIGKEIVDLVLD 121
RA+ VDLEP+V+D V+ T LF+P LI+ E A G ++ G+ G+E++ V+
Sbjct: 67 RAIMVDLEPSVIDNVK-ATSGSLFNPANLISRTEGAG---GNFAVGYLGAGREVLPEVMS 122
Query: 122 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTA 181
R+ D+C + G ++ H LL+E L YG+ L A+ P+PQVS+
Sbjct: 123 RLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSV 182
Query: 182 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 241
V EPYN++ +T +D + DNEA++D+ R +IE PT +LN LI + ++ ITA
Sbjct: 183 VTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITA 242
Query: 242 SLRFDGALNVDLT--EFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 299
S+RF G L V+++ E TNLVP P +HF + +AP+ +++ E+L + E+ + F+
Sbjct: 243 SMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDN 302
Query: 300 ANQMVKCDPRHGKYMACCMLYRGDVVPKDV-NAAIATIKTKRTIQFVDWCPTGFKVGINY 358
+ C P G++++ +LYRG + K + +AA+A ++ K + + W PT FK+G
Sbjct: 303 GSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTY--WIPTAFKIGYVE 360
Query: 359 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 418
QP ++++ +L+N T IA R+ H FD ++ ++AF +WY+ EGM E +
Sbjct: 361 QPGI--------SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQ 412
Query: 419 FSEAREDLAALEKDY---EEVGMDS-VEGEGEETNTRA 452
+ R L + Y EE G + V+ +T RA
Sbjct: 413 INVLRASAQELVQSYQVAEESGAKAKVQDSAGDTGMRA 450
Score = 258 bits (659), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 206/365 (56%), Gaps = 7/365 (1%)
Query: 491 MDSRECISIHVGQAGVQIGNACWELYCLEHGIQP-DGQMPSDKTIGGGDDSFNTFFSETG 549
M I + +GQAG QI + W+ CLEHGI P GQ G SF + E+
Sbjct: 1 MKVNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESS 60
Query: 550 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 609
+G +VPRA+ VDLEP+V+D V+ T LF+P LI+ E A N+A G+ G+E++
Sbjct: 61 SGSYVPRAIMVDLEPSVIDNVK-ATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPE 119
Query: 610 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 669
V+ R+ D+C + G ++ H LL+E L YG+ L A+ P+PQV
Sbjct: 120 VMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQV 179
Query: 670 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 729
S+ V EPYN++ +T +D + DNEA++D+ R +IE PT +LN LI + ++
Sbjct: 180 SSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAG 239
Query: 730 ITASLRFDGALNVDLT--EFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 787
ITAS+RF G L V+++ E TNLVP P +HF + +AP+ +++ E+L + E+ +
Sbjct: 240 ITASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSL 299
Query: 788 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDV-NAAIATIKTKRTIQFVDWCPTGFKVG 846
F+ + C P G++++ +LYRG + K + +AA+A ++ K + + W PT FK+G
Sbjct: 300 FDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTY--WIPTAFKIG 357
Query: 847 INYQP 851
QP
Sbjct: 358 YVEQP 362
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 233/437 (53%), Gaps = 16/437 (3%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE +SIHVGQ G QI ++ W L EHG+ G + + + + + FF + GK+
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTL-KEGSNAAANSNMEVFFHKVRDGKY 60
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAV VDLEP V+ + G QLF ++ AA G+ G++++D ++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWAR--GYNVEGEKVIDQIM 118
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
+ I ++ GLQGFL+ H L++ERL Y KK F++ P+P +S
Sbjct: 119 NVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISD 178
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
+ VEPYN+ILT L+++D A ++DNEA++ I + L+ P Y +LN +I IVSS+T
Sbjct: 179 SAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRF G LN DL+EF TNLVP+P HF ++AP+ A + + + ++ F
Sbjct: 238 ASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQD 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT--GFKVGINY 358
N D + G Y+A L+RGDV KDV+ +ATI ++++ + + P G K+G
Sbjct: 298 NFTAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAE 355
Query: 359 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 418
P LA L N T IA + RL +FD+M+ A+ HWY G+
Sbjct: 356 TAPEGFASSGLA--------LVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDM 407
Query: 419 FSEAREDLAALEKDYEE 435
++AR +A L + Y +
Sbjct: 408 MAKARNQIATLAQSYRD 424
Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 207/370 (55%), Gaps = 6/370 (1%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE +SIHVGQ G QI ++ W L EHG+ G + + + + + FF + GK+
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTL-KEGSNAAANSNMEVFFHKVRDGKY 60
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAV VDLEP V+ + G QLF ++ AANN+ARG+ G++++D +++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 614 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
I ++ GLQGFL+ H L++ERL Y KK F++ P+P +S +
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ILT L+++D A ++DNEA++ I + L+ P Y +LN +I IVSS+TAS
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTAS 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL+EF TNLVP+P HF ++AP+ A + + + ++ F N
Sbjct: 240 LRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNF 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT--GFKVGINYQP 851
D + G Y+A L+RGDV KDV+ +ATI ++++ + + P G K+G
Sbjct: 300 TAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETA 357
Query: 852 PTVVPGGDLA 861
P LA
Sbjct: 358 PEGFASSGLA 367
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 227/441 (51%), Gaps = 16/441 (3%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE I++ +GQ G QIG W+ C EHGI P+ + T G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFAT--EGTDRKDVFFYQADDEHY 60
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
+PRAV +DLEP V+ + Y +L++PE + + SG ++ G++I + +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP-APQVS 179
D I + AD L+GF++ H L+ERL+ Y KK ++++P ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 180 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 239
VV+PYNS+LT +++DC ++DN A+ I L I+ P+++ +N+L+ I+S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 240 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEK-AYHEQLSVAEITNACFE 298
T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 299 PANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 355
P N MV Y+A + +G+V P V+ ++ I+ ++ F+ W P +V
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 356 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 415
++ + P + ++ + M++N T+I+ + R ++D + + AF+ + E M
Sbjct: 360 LSRKSPYLPSAHRVSGL-----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 414
Query: 416 EGEFSE---AREDLAALEKDY 433
+ F E +RE + L +Y
Sbjct: 415 KDNFDEMDTSREIVQQLIDEY 435
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 196/366 (53%), Gaps = 10/366 (2%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE I++ +GQ G QIG W+ C EHGI P+ + T G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFAT--EGTDRKDVFFYQADDEHY 60
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVL 611
+PRAV +DLEP V+ + Y +L++PE + + A NN+A G ++ G++I + +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 612 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP-APQVS 670
D I + AD L+GF++ H L+ERL+ Y KK ++++P ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 671 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 730
VV+PYNS+LT +++DC ++DN A+ I L I+ P+++ +N+L+ I+S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 731 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEK-AYHEQLSVAEITNACFE 789
T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 790 PANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 846
P N MV Y+A + +G+V P V+ ++ I+ ++ F+ W P +V
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 847 INYQPP 852
++ + P
Sbjct: 360 LSRKSP 365
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 227/441 (51%), Gaps = 16/441 (3%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE I++ +GQ G QIG W+ C EHGI P+ + T G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFAT--EGTDRKDVFFYQADDEHY 60
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
+PRAV +DLEP V+ + Y +L++PE + + SG ++ G++I + +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP-APQVS 179
D I + AD L+GF++ H L+ERL+ Y KK ++++P ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 180 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 239
VV+PYNS+LT +++DC ++DN A+ I L I+ P+++ +N+L+ I+S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 240 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEK-AYHEQLSVAEITNACFE 298
T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 299 PANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 355
P N MV Y+A + +G+V P V+ ++ I+ ++ F+ W P +V
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 356 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 415
++ + P + ++ + M++N T+I+ + R ++D + + AF+ + E M
Sbjct: 360 LSRKSPYLPSAHRVSGL-----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 414
Query: 416 EGEFSE---AREDLAALEKDY 433
+ F E +RE + L +Y
Sbjct: 415 KDNFDEMDTSREIVQQLIDEY 435
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 196/366 (53%), Gaps = 10/366 (2%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE I++ +GQ G QIG W+ C EHGI P+ + T G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFAT--EGTDRKDVFFYQADDEHY 60
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVL 611
+PRAV +DLEP V+ + Y +L++PE + + A NN+A G ++ G++I + +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 612 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP-APQVS 670
D I + AD L+GF++ H L+ERL+ Y KK ++++P ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 671 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 730
VV+PYNS+LT +++DC ++DN A+ I L I+ P+++ +N+L+ I+S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 731 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEK-AYHEQLSVAEITNACFE 789
T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 790 PANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 846
P N MV Y+A + +G+V P V+ ++ I+ ++ F+ W P +V
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 847 INYQPP 852
++ + P
Sbjct: 360 LSRKSP 365
>pdb|2E4H|B Chain B, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 36
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 417 GEFSEAREDLAALEKDYEEVGMDSV 441
GEFSEARED+AALEKDYEEVG+DSV
Sbjct: 1 GEFSEAREDMAALEKDYEEVGVDSV 25
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/24 (91%), Positives = 24/24 (100%)
Query: 470 GEFSEAREDLAALEKDYEEVGMDS 493
GEFSEARED+AALEKDYEEVG+DS
Sbjct: 1 GEFSEAREDMAALEKDYEEVGVDS 24
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 358 YQPPTVVPGGDLAKVQRAVCM--LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 415
+Q P VPG +A R L +AE W ++ +L+ +++ Y+ EG
Sbjct: 86 FQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFS 145
Query: 416 EGE 418
GE
Sbjct: 146 GGE 148
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From
Leptospirillum Rubarum
Length = 355
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 243 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 295
L+F G LN L F+ P+P+ FP+ + P E + S ++I +
Sbjct: 269 LKFQGHLNRSLAGFRLEGGPFPKXEFPVTLFNPKDGNEAGILTRTSSSDILGS 321
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 786
L+F G LN L F+ P+P+ FP+ + P E + S ++I +
Sbjct: 269 LKFQGHLNRSLAGFRLEGGPFPKXEFPVTLFNPKDGNEAGILTRTSSSDILGS 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,667,164
Number of Sequences: 62578
Number of extensions: 1106057
Number of successful extensions: 2443
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2273
Number of HSP's gapped (non-prelim): 90
length of query: 864
length of database: 14,973,337
effective HSP length: 107
effective length of query: 757
effective length of database: 8,277,491
effective search space: 6266060687
effective search space used: 6266060687
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)