RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15389
(864 letters)
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 978 bits (2530), Expect = 0.0
Identities = 401/437 (91%), Positives = 424/437 (97%), Gaps = 4/437 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE ISIH+GQAG+QIGNACWELYCLEHGIQPDGQMPSDKTIGGGDD+FNTFFSETG+GKH
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYS-GHYTIGKEIVDLV 119
VPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAA ++ GHYTIGKEI+DLV
Sbjct: 61 VPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAA---NNFARGHYTIGKEIIDLV 117
Query: 120 LDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVS 179
LDRIRKLAD CTGLQGFLIFHSFGGGTGSGF SLL+ERLSVDYGKKSKLEF +YP+PQVS
Sbjct: 118 LDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVS 177
Query: 180 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 239
TAVVEPYNS+LTTH+ LEHSDC+FMVDNEAIYDICRRNLDIERPTYTNLNRLI Q+VSSI
Sbjct: 178 TAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSI 237
Query: 240 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 299
TASLRFDGALNVDL EFQTNLVPYPRIHFPLV+YAP+ISAEKAYHEQLSVAEITNACFEP
Sbjct: 238 TASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEP 297
Query: 300 ANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQ 359
ANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFKVGINYQ
Sbjct: 298 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQ 357
Query: 360 PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 419
PPTVVPGGDLAKVQRAVCMLSNTTAIAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEF
Sbjct: 358 PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEF 417
Query: 420 SEAREDLAALEKDYEEV 436
SEAREDLAALEKDYEEV
Sbjct: 418 SEAREDLAALEKDYEEV 434
Score = 840 bits (2172), Expect = 0.0
Identities = 342/371 (92%), Positives = 363/371 (97%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE ISIH+GQAG+QIGNACWELYCLEHGIQPDGQMPSDKTIGGGDD+FNTFFSETG+GKH
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DLVLDR
Sbjct: 61 VPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDR 120
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLAD CTGLQGFLIFHSFGGGTGSGF SLL+ERLSVDYGKKSKLEF +YP+PQVSTAV
Sbjct: 121 IRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAV 180
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNS+LTTH+ LEHSDC+FMVDNEAIYDICRRNLDIERPTYTNLNRLI Q+VSSITAS
Sbjct: 181 VEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDL EFQTNLVPYPRIHFPLV+YAP+ISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQ 300
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 301 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPT 360
Query: 854 VVPGGDLAKMS 864
VVPGGDLAK+
Sbjct: 361 VVPGGDLAKVQ 371
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 953 bits (2465), Expect = 0.0
Identities = 382/447 (85%), Positives = 414/447 (92%), Gaps = 2/447 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE ISIH+GQAG+Q+GNACWEL+CLEHGIQPDGQMPSDK IG DD+FNTFFSETGAGKH
Sbjct: 2 REVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPR VF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAA GHYTIGKEIVDL L
Sbjct: 62 VPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFAR--GHYTIGKEIVDLCL 119
Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLAD CTGLQGFL+FH+ GGGTGSG SLL+ERLSVDYGKKSKL F IYP+PQVST
Sbjct: 120 DRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNS+L+TH+ LEH+D A M+DNEAIYDICRRNLDIERPTYTNLNRLI Q++SS+T
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVDLTEFQTNLVPYPRIHF L +YAP+ISAEKAYHEQLSVAEITN+ FEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M KCDPRHGKYMACC++YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFK GINYQP
Sbjct: 300 NMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCM+SN+TAIAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSVEGEGEE 447
EAREDLAALEKDYEEVG +S + EGEE
Sbjct: 420 EAREDLAALEKDYEEVGAESADEEGEE 446
Score = 811 bits (2097), Expect = 0.0
Identities = 321/371 (86%), Positives = 348/371 (93%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE ISIH+GQAG+Q+GNACWEL+CLEHGIQPDGQMPSDK IG DD+FNTFFSETGAGKH
Sbjct: 2 REVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPR VF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDR
Sbjct: 62 VPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDR 121
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLAD CTGLQGFL+FH+ GGGTGSG SLL+ERLSVDYGKKSKL F IYP+PQVSTAV
Sbjct: 122 IRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNS+L+TH+ LEH+D A M+DNEAIYDICRRNLDIERPTYTNLNRLI Q++SS+TAS
Sbjct: 182 VEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPRIHF L +YAP+ISAEKAYHEQLSVAEITN+ FEPAN
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANM 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
M KCDPRHGKYMACC++YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFK GINYQPPT
Sbjct: 302 MAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPT 361
Query: 854 VVPGGDLAKMS 864
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKVQ 372
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 944 bits (2442), Expect = 0.0
Identities = 382/447 (85%), Positives = 420/447 (93%), Gaps = 2/447 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKH
Sbjct: 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAA GHYTIGKEIVDL L
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFAR--GHYTIGKEIVDLCL 119
Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLAD CTGLQGFL+F++ GGGTGSG SLL+ERLSVDYGKKSKL F +YP+PQVST
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLI Q++SS+T
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKAYHEQLSVAEITN+ FEPA
Sbjct: 240 ASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQP
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
PTVVPGGDLAKVQRAVCM+SN+TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSVEGEGEE 447
EAREDLAALEKDYEEVG +S EGEG+E
Sbjct: 420 EAREDLAALEKDYEEVGAESAEGEGDE 446
Score = 809 bits (2090), Expect = 0.0
Identities = 321/370 (86%), Positives = 353/370 (95%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKH
Sbjct: 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDR 121
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLAD CTGLQGFL+F++ GGGTGSG SLL+ERLSVDYGKKSKL F +YP+PQVSTAV
Sbjct: 122 IRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLI Q++SS+TAS
Sbjct: 182 VEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKAYHEQLSVAEITN+ FEPA+
Sbjct: 242 LRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASM 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPT
Sbjct: 302 MAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPT 361
Query: 854 VVPGGDLAKM 863
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKV 371
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 738 bits (1908), Expect = 0.0
Identities = 270/449 (60%), Positives = 333/449 (74%), Gaps = 9/449 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE I++ VGQ G QIGNA WE CLEHGI PDG + GD+ F+ FF E GK
Sbjct: 2 REIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKF 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP V+D+VR G Y LFHPE +I GKE A GHYT+GKEI+D V+
Sbjct: 60 VPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGNNWAR--GHYTVGKEIIDDVM 117
Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D IR+ AD C GLQGFL+ HS GGGTGSG SLL+ERL +Y KK KL F+++PAP+VS
Sbjct: 118 DMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYNS+LT H LE+SDC F+VDNEA+YDICRRNL I+ P+Y +LN+LI ++SS+T
Sbjct: 178 VVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
SLRF G LNVDL QTNLVPYPR+HFPLV+Y P S A HE+ SV+E+TN F+P
Sbjct: 238 TSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
NQMV CDPR G+YMA C+L+RGDV P+DV+ A+ +++KRTIQFV+WCPTGFKV I +P
Sbjct: 298 NQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P+ + A+V + CMLSNTT+IAEA+ R+D +FDLM+ KRAF+HWYVGEGMEEGEFS
Sbjct: 358 PS-----EPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFS 412
Query: 421 EAREDLAALEKDYEEVGMDSVEGEGEETN 449
EARED+A LE++YE DS + E+
Sbjct: 413 EAREDVADLEEEYEAAEQDSYLDDEEDEE 441
Score = 631 bits (1630), Expect = 0.0
Identities = 225/371 (60%), Positives = 277/371 (74%), Gaps = 2/371 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE I++ VGQ G QIGNA WE CLEHGI PDG + GD+ F+ FF E GK
Sbjct: 2 REIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKF 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP V+D+VR G Y LFHPE +I GKE A NN+ARGHYT+GKEI+D V+D
Sbjct: 60 VPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDM 119
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IR+ AD C GLQGFL+ HS GGGTGSG SLL+ERL +Y KK KL F+++PAP+VS V
Sbjct: 120 IRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNS+LT H LE+SDC F+VDNEA+YDICRRNL I+ P+Y +LN+LI ++SS+T S
Sbjct: 180 VEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTS 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LNVDL QTNLVPYPR+HFPLV+Y P S A HE+ SV+E+TN F+P NQ
Sbjct: 240 LRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQ 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MV CDPR G+YMA C+L+RGDV P+DV+ A+ +++KRTIQFV+WCPTGFKV I +PP+
Sbjct: 300 MVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPS 359
Query: 854 VVPGGDLAKMS 864
D++
Sbjct: 360 EPAEVDVSGCM 370
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 486 bits (1252), Expect = e-165
Identities = 188/434 (43%), Positives = 257/434 (59%), Gaps = 52/434 (11%)
Query: 2 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 61
E ISI +GQ G QIGN WEL
Sbjct: 1 EIISIQIGQCGNQIGNKFWELL-------------------------------------- 22
Query: 62 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLD 121
+ VDL+P V++E+ G +LF P QL+ GKE + G+YTIG E++D +LD
Sbjct: 23 ---ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNN--WARGYYTIGPELIDEILD 77
Query: 122 RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTA 181
RIRK ++C LQGF I HS GGGTGSG SLL+E LS +Y K F+I+P+PQ S+
Sbjct: 78 RIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSN 137
Query: 182 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 241
VVEPYNSIL+ + LE+SD + DNEA+Y+I R LDI+ P++ +LN +I QI+SSITA
Sbjct: 138 VVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITA 197
Query: 242 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN 301
SLRF G LN DL + TNLVP+PR+HF ++AP+IS + E+L++ +I N F N
Sbjct: 198 SLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDN 257
Query: 302 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 361
CDP G+Y+A +++RGDV ++ AI +K K IQ W P GFKV +PP
Sbjct: 258 SFFSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPP 315
Query: 362 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 421
A++ ++ LSN+T+I E+ RL KFD +Y ++AF+HWY+GEGM+E EF+E
Sbjct: 316 R-------AELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTE 368
Query: 422 AREDLAALEKDYEE 435
A L L + Y+E
Sbjct: 369 AESSLEDLIQSYQE 382
Score = 418 bits (1078), Expect = e-139
Identities = 161/358 (44%), Positives = 215/358 (60%), Gaps = 43/358 (12%)
Query: 495 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 554
E ISI +GQ G QIGN WEL
Sbjct: 1 EIISIQIGQCGNQIGNKFWELL-------------------------------------- 22
Query: 555 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 614
+ VDL+P V++E+ G +LF P QL+ GKE + NN+ARG+YTIG E++D +LDRI
Sbjct: 23 ---ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRI 79
Query: 615 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 674
RK ++C LQGF I HS GGGTGSG SLL+E LS +Y K F+I+P+PQ S+ VV
Sbjct: 80 RKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVV 139
Query: 675 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 734
EPYNSIL+ + LE+SD + DNEA+Y+I R LDI+ P++ +LN +I QI+SSITASL
Sbjct: 140 EPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASL 199
Query: 735 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 794
RF G LN DL + TNLVP+PR+HF ++AP+IS + E+L++ +I N F N
Sbjct: 200 RFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSF 259
Query: 795 VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
CDP G+Y+A +++RGDV ++ AI +K K IQ W P GFKV +PP
Sbjct: 260 FSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPP 315
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 449 bits (1157), Expect = e-151
Identities = 179/443 (40%), Positives = 261/443 (58%), Gaps = 28/443 (6%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF----NTFFSETG 56
RE + I GQ G QIG WE+ EHG+ P G G D N +F+E
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYK------GDSDLQLERINVYFNEAS 54
Query: 57 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDA----ARQIGEYSGHYTIG 112
GK+VPRA+ VDLEP +D VR+G + QLF P+ + G+ A A+ GHYT G
Sbjct: 55 GGKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAK------GHYTEG 108
Query: 113 KEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAI 172
E++D VLD +RK A+ C LQGF + HS GGGTGSG +LL+ ++ +Y + F++
Sbjct: 109 AELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSV 168
Query: 173 YPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI 232
+P+P+VS VVEPYN+ L+ H +E+SD F +DNEA+YDIC R L + PTY +LN L+
Sbjct: 169 FPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLV 228
Query: 233 GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEI 292
++S IT LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+
Sbjct: 229 SAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPEL 288
Query: 293 TNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF 352
T F+ N M CDPRHG+Y+ ++RG V K+V+ + ++ K + FV+W P
Sbjct: 289 TQQMFDAKNMMAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNV 348
Query: 353 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 412
K + PP G ++ + N+TAI E + R+ +F M+ ++AF+HWY GE
Sbjct: 349 KTAVCDIPPR---GLKMSAT-----FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400
Query: 413 GMEEGEFSEAREDLAALEKDYEE 435
GM+E EF+EA ++ L +Y++
Sbjct: 401 GMDEMEFTEAESNMNDLVSEYQQ 423
Score = 408 bits (1050), Expect = e-135
Identities = 156/364 (42%), Positives = 221/364 (60%), Gaps = 10/364 (2%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF----NTFFSETG 549
RE + I GQ G QIG WE+ EHG+ P G G D N +F+E
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYK------GDSDLQLERINVYFNEAS 54
Query: 550 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 609
GK+VPRA+ VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E++D
Sbjct: 55 GGKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDS 114
Query: 610 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV 669
VLD +RK A+ C LQGF + HS GGGTGSG +LL+ ++ +Y + F+++P+P+V
Sbjct: 115 VLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKV 174
Query: 670 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 729
S VVEPYN+ L+ H +E+SD F +DNEA+YDIC R L + PTY +LN L+ ++S
Sbjct: 175 SDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSG 234
Query: 730 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 789
IT LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+
Sbjct: 235 ITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD 294
Query: 790 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 849
N M CDPRHG+Y+ ++RG V K+V+ + ++ K + FV+W P K +
Sbjct: 295 AKNMMAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCD 354
Query: 850 QPPT 853
PP
Sbjct: 355 IPPR 358
Score = 35.7 bits (83), Expect = 0.10
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 464 GEGMEEGEFSEAREDLAALEKDYEE 488
GEGM+E EF+EA ++ L +Y++
Sbjct: 399 GEGMDEMEFTEAESNMNDLVSEYQQ 423
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 416 bits (1071), Expect = e-139
Identities = 157/360 (43%), Positives = 200/360 (55%), Gaps = 44/360 (12%)
Query: 495 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 554
E ++I +GQAG QIG WE
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------- 22
Query: 555 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 614
V VD EP V+DE +G YR LF QLIT A NN+A GH T G+E + +LD I
Sbjct: 23 ---VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDII 79
Query: 615 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 674
RK A++C LQGF I HS GGGTGSG +L ERL +Y K+ K+ F+I P P +V
Sbjct: 80 RKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGV-IV 138
Query: 675 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 734
PYNSILT HT EHSDC ++DNEA++DIC R L I++PT+ ++N L+ +SS+T L
Sbjct: 139 RPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198
Query: 735 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 794
RFDG+LNVDL E NLVP+PR+HF +V YAP+ S A L VAE+ NQM
Sbjct: 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQM 258
Query: 795 VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 854
V CDP HG Y+A +L RG V P +V IA + + + W P G KVG++ PP
Sbjct: 259 VVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRT--SHLSWSPPGIKVGVSPTPPAS 316
Score = 409 bits (1054), Expect = e-137
Identities = 157/381 (41%), Positives = 204/381 (53%), Gaps = 53/381 (13%)
Query: 2 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 61
E ++I +GQAG QIG WE
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------- 22
Query: 62 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLD 121
V VD EP V+DE +G YR LF QLIT A GH T G+E + +LD
Sbjct: 23 ---VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNN--WAFGHETAGEEYQEEILD 77
Query: 122 RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTA 181
IRK A++C LQGF I HS GGGTGSG +L ERL +Y K+ K+ F+I P P
Sbjct: 78 IIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGV- 136
Query: 182 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 241
+V PYNSILT HT EHSDC ++DNEA++DIC R L I++PT+ ++N L+ +SS+T
Sbjct: 137 IVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTT 196
Query: 242 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN 301
LRFDG+LNVDL E NLVP+PR+HF +V YAP+ S A L VAE+ N
Sbjct: 197 PLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKN 256
Query: 302 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 361
QMV CDP HG Y+A +L RG V P +V IA + + + W P G KVG++ PP
Sbjct: 257 QMVVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRT--SHLSWSPPGIKVGVSPTPP 314
Query: 362 TVVPGGDLAKVQRAVCMLSNT 382
+ + + +LSN+
Sbjct: 315 AS-------EHKVSALLLSNS 328
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 414 bits (1066), Expect = e-137
Identities = 184/450 (40%), Positives = 268/450 (59%), Gaps = 18/450 (4%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETGA 57
RE + I GQ G QIG+ WE+ EHGI P G G D + N +++E
Sbjct: 2 REIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTY-----QGDSDLQLERINVYYNEATG 56
Query: 58 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVD 117
G++VPRAV +DLEP +D VR G Y QLF P+ I G+ A + GHYT G E++D
Sbjct: 57 GRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAK--GHYTEGAELID 114
Query: 118 LVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQ 177
VLD +RK A+ C LQGF I HS GGGTGSG +LL+ +L +Y + + F+++P+P+
Sbjct: 115 SVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPK 174
Query: 178 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVS 237
VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ ++S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMS 234
Query: 238 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACF 297
+T LRF G LN DL + NLVP+PR+HF ++ +AP+ S + LSV E+T F
Sbjct: 235 GVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMF 294
Query: 298 EPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 357
+ N M DPRHG+Y+ L+RG + K+V+ + ++ K + FV+W P K +
Sbjct: 295 DAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVC 354
Query: 358 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEG 417
PP + +V + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E
Sbjct: 355 DIPPKGLK--------MSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 418 EFSEAREDLAALEKDYEEVGMDSVEGEGEE 447
EF+EA ++ L +Y++ +VE EGE
Sbjct: 407 EFTEAESNMNDLVSEYQQYQDATVEEEGEF 436
Score = 372 bits (958), Expect = e-121
Identities = 157/366 (42%), Positives = 224/366 (61%), Gaps = 8/366 (2%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETGA 550
RE + I GQ G QIG+ WE+ EHGI P G G D + N +++E
Sbjct: 2 REIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTY-----QGDSDLQLERINVYYNEATG 56
Query: 551 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 610
G++VPRAV +DLEP +D VR G Y QLF P+ I G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 611 LDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVS 670
LD +RK A+ C LQGF I HS GGGTGSG +LL+ +L +Y + + F+++P+P+VS
Sbjct: 117 LDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVS 176
Query: 671 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 730
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ ++S +
Sbjct: 177 DTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGV 236
Query: 731 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 790
T LRF G LN DL + NLVP+PR+HF ++ +AP+ S + LSV E+T F+
Sbjct: 237 TCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDA 296
Query: 791 ANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQ 850
N M DPRHG+Y+ L+RG + K+V+ + ++ K + FV+W P K +
Sbjct: 297 KNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDI 356
Query: 851 PPTVVP 856
PP +
Sbjct: 357 PPKGLK 362
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 399 bits (1028), Expect = e-131
Identities = 175/458 (38%), Positives = 266/458 (58%), Gaps = 15/458 (3%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ C EHGI P G D + + N +++E G++
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQ--LERINVYYNEASGGRY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A + GHYT G E++D VL
Sbjct: 60 VPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELIDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK A+ C LQGF + HS GGGTGSG +LL+ ++ +Y + L F+++P+P+VS
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAK 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIP 357
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
P ++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 421 EAR---EDLAALEKDYEEVGMDSVEGEGEETNTRARHE 455
EA DL + + Y++ D +E E
Sbjct: 410 EAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
Score = 357 bits (917), Expect = e-115
Identities = 150/360 (41%), Positives = 223/360 (61%), Gaps = 2/360 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ C EHGI P G D + + N +++E G++
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQ--LERINVYYNEASGGRY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 60 VPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK A+ C LQGF + HS GGGTGSG +LL+ ++ +Y + L F+++P+P+VS V
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T
Sbjct: 180 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T ++ N
Sbjct: 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK 359
Score = 29.4 bits (66), Expect = 8.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 464 GEGMEEGEFSEAREDLAALEKDYEE 488
GEGM+E EF+EA ++ L +Y++
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQ 424
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 312 bits (802), Expect = 5e-98
Identities = 153/443 (34%), Positives = 244/443 (55%), Gaps = 22/443 (4%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE I++ VGQ G QIG+ W+ C EHGI PDG D GGD + FF + +
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGI-LEDFATDGGDRK-DVFFYQADDEHY 58
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AARQIGEYSGHYTIGKEIVDL 118
VPRA+ +DLEP V++ ++ YR L++PE + K A SG Y+ G+E+ +
Sbjct: 59 VPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWA--SG-YSQGEEVQEE 115
Query: 119 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA-PQ 177
+LD I + AD L+GF++ HS GGTGSG S L+ERL+ Y KK ++++P +
Sbjct: 116 ILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDE 175
Query: 178 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVS 237
S VV+PYNSILT + ++DC ++DN A+ I L I+ PT+ +N L+ ++S
Sbjct: 176 SSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMS 235
Query: 238 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA-YHEQLSVAEITNAC 296
+ T +LR+ G +N DL +L+P PR+HF + +Y P+ S + A + +V ++
Sbjct: 236 ASTTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRL 295
Query: 297 FEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 355
+P N MV ++G Y++ + +G+V P V+ ++ I+ +R F+ W P +V
Sbjct: 296 LQPKNIMVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVA 355
Query: 356 INYQPPTVVPGGDLAKVQRAVC--MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 413
++ + P V V ML+N T+IA + R+ +FD + +RAF+ Y E
Sbjct: 356 LSKKSPYV-------PTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKED 408
Query: 414 MEEG---EFSEAREDLAALEKDY 433
M EF E+RE + +L ++Y
Sbjct: 409 MFSDNLDEFDESREVVQSLIEEY 431
Score = 293 bits (752), Expect = 9e-91
Identities = 132/369 (35%), Positives = 211/369 (57%), Gaps = 8/369 (2%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE I++ VGQ G QIG+ W+ C EHGI PDG D GGD + FF + +
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGI-LEDFATDGGDRK-DVFFYQADDEHY 58
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVL 611
VPRA+ +DLEP V++ ++ YR L++PE + K A NN+A G Y+ G+E+ + +L
Sbjct: 59 VPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASG-YSQGEEVQEEIL 117
Query: 612 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA-PQVS 670
D I + AD L+GF++ HS GGTGSG S L+ERL+ Y KK ++++P + S
Sbjct: 118 DIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESS 177
Query: 671 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 730
VV+PYNSILT + ++DC ++DN A+ I L I+ PT+ +N L+ ++S+
Sbjct: 178 DVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237
Query: 731 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA-YHEQLSVAEITNACFE 789
T +LR+ G +N DL +L+P PR+HF + +Y P+ S + A + +V ++ +
Sbjct: 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQ 297
Query: 790 PANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 848
P N MV ++G Y++ + +G+V P V+ ++ I+ +R F+ W P +V ++
Sbjct: 298 PKNIMVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALS 357
Query: 849 YQPPTVVPG 857
+ P V
Sbjct: 358 KKSPYVPTA 366
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 294 bits (755), Expect = 6e-92
Identities = 136/438 (31%), Positives = 225/438 (51%), Gaps = 61/438 (13%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE I + VGQ G QIG W+L EH A
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH---------------------------LKA--- 30
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
RAV +D+E VV+E+ G R LF QL+T A G++ G + +D +L
Sbjct: 31 --RAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWA--VGYHQYGHQYIDSIL 86
Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA--PQV 178
++IRK A++C LQ F I HS GGGTGSG + ++E L+ ++ + + ++YP+ V
Sbjct: 87 EKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDV 146
Query: 179 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 238
T+ PYNS+L +EH+DC ++N+A+ + +N ++ ++ +
Sbjct: 147 ITS---PYNSVLALRELIEHADCVLPIENQALVP------------FDAMNSIVANLLLN 191
Query: 239 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 298
+T+S+RF+G+LNVDL E NLVP+PR+HF + + +P+ + ++ + F
Sbjct: 192 LTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFS 251
Query: 299 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 358
+Q+++ DP+HG Y+AC +L RG+V D+ I +K K ++FV W G+K+G+
Sbjct: 252 RNHQLIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCS 309
Query: 359 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 418
PP ++ L+N T I + L +F +Y ++A +H Y GME+G+
Sbjct: 310 VPP--------VGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGD 361
Query: 419 FSEAREDLAALEKDYEEV 436
F+EA E ++ L +Y+ +
Sbjct: 362 FTEALESISNLIDEYDYL 379
Score = 268 bits (686), Expect = 6e-82
Identities = 119/361 (32%), Positives = 192/361 (53%), Gaps = 51/361 (14%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE I + VGQ G QIG W+L EH A
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH---------------------------LKA--- 30
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
RAV +D+E VV+E+ G R LF QL+T A NN+A G++ G + +D +L++
Sbjct: 31 --RAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEK 88
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA--PQVST 671
IRK A++C LQ F I HS GGGTGSG + ++E L+ ++ + + ++YP+ V T
Sbjct: 89 IRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVIT 148
Query: 672 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 731
+ PYNS+L +EH+DC ++N+A+ + +N ++ ++ ++T
Sbjct: 149 S---PYNSVLALRELIEHADCVLPIENQALVP------------FDAMNSIVANLLLNLT 193
Query: 732 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 791
+S+RF+G+LNVDL E NLVP+PR+HF + + +P+ + ++ + F
Sbjct: 194 SSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRN 253
Query: 792 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 851
+Q+++ DP+HG Y+AC +L RG+V D+ I +K K ++FV W G+K+G+ P
Sbjct: 254 HQLIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVP 311
Query: 852 P 852
P
Sbjct: 312 P 312
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 285 bits (732), Expect = 1e-87
Identities = 131/471 (27%), Positives = 220/471 (46%), Gaps = 58/471 (12%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEH-GIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 59
RE +++ VGQ G Q+G+ W++ EH I + Q DD+ ++FF
Sbjct: 2 REIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENV 52
Query: 60 HVP-------RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIG 112
+ P RAV VD+E V++++ LF ++ A GH G
Sbjct: 53 NRPGKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAV--GHMEYG 110
Query: 113 KEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAI 172
+ +D + + +R+ +QC LQ F + HS GGGTGSG + ++ L ++ + +
Sbjct: 111 DKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVV 170
Query: 173 YPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIER---------- 222
+P+ V + PYNS +EH+DC +DN+A+ +I L ++
Sbjct: 171 FPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKR 229
Query: 223 -----------PT------YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPR 265
PT Y +N ++ Q++S++T+S+RF+G+LNVD+ E TNLVPYPR
Sbjct: 230 GPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPR 289
Query: 266 IHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVV 325
+HF + AP++S + + ++ C +P +QMV P GKY+A ++ RG
Sbjct: 290 LHFLTSSIAPLVSLKDVAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQN 349
Query: 326 PKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAI 385
DV I + K + + W GFK G+ P P ++ L+N I
Sbjct: 350 VSDVTRNIL--RLKEQLNMIYWNEDGFKTGLCNVSPLGQP--------YSLLCLANNCCI 399
Query: 386 AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 436
+ + +F+ +Y +++ VH Y E +E+ F E E + L DY +
Sbjct: 400 RNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYL 449
Score = 270 bits (691), Expect = 1e-81
Identities = 117/394 (29%), Positives = 192/394 (48%), Gaps = 47/394 (11%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEH-GIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 552
RE +++ VGQ G Q+G+ W++ EH I + Q DD+ ++FF
Sbjct: 2 REIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENV 52
Query: 553 HVP-------RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE 605
+ P RAV VD+E V++++ LF ++ A NN+A GH G +
Sbjct: 53 NRPGKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDK 112
Query: 606 IVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYP 665
+D + + +R+ +QC LQ F + HS GGGTGSG + ++ L ++ + ++P
Sbjct: 113 YIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFP 172
Query: 666 APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIER------------ 713
+ V + PYNS +EH+DC +DN+A+ +I L ++
Sbjct: 173 S-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGP 231
Query: 714 ---------PT------YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 758
PT Y +N ++ Q++S++T+S+RF+G+LNVD+ E TNLVPYPR+H
Sbjct: 232 QPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLH 291
Query: 759 FPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPK 818
F + AP++S + + ++ C +P +QMV P GKY+A ++ RG
Sbjct: 292 FLTSSIAPLVSLKDVAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVS 351
Query: 819 DVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 852
DV I + K + + W GFK G+ P
Sbjct: 352 DVTRNIL--RLKEQLNMIYWNEDGFKTGLCNVSP 383
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 272 bits (697), Expect = 1e-82
Identities = 137/444 (30%), Positives = 233/444 (52%), Gaps = 19/444 (4%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDEHY 60
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
+PRA+ +DLEP V++ ++ YR L++ E + SG Y G+++ + ++
Sbjct: 61 IPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASG-YHQGEQVEEDIM 119
Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA-PQVS 179
D I + AD L+GF++ HS GGTGSG S L+E L+ Y KK ++++P + S
Sbjct: 120 DMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETS 179
Query: 180 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 239
VV+PYNS+LT ++DC ++DN A+ I L +E PT+ N L+ ++S+
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAS 239
Query: 240 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVAEITNACFE 298
T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQ 299
Query: 299 PANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFK 353
N MV R KY++ + +G+V P V+ ++ I+ ++ F++W P +
Sbjct: 300 TKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQ 359
Query: 354 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 413
V ++ + P V ++ + ML+N T+I +++ ++D + K+AF+ Y
Sbjct: 360 VALSRKSPYVQTAHRVSGL-----MLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFP 414
Query: 414 M----EEGEFSEAREDLAALEKDY 433
M + EF E+RE + +L +Y
Sbjct: 415 MFADNDLSEFDESREIVESLVDEY 438
Score = 259 bits (663), Expect = 1e-77
Identities = 122/370 (32%), Positives = 201/370 (54%), Gaps = 12/370 (3%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDEHY 60
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVL 611
+PRA+ +DLEP V++ ++ YR L++ E + A NN+A G Y G+++ + ++
Sbjct: 61 IPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASG-YHQGEQVEEDIM 119
Query: 612 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA-PQVS 670
D I + AD L+GF++ HS GGTGSG S L+E L+ Y KK ++++P + S
Sbjct: 120 DMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETS 179
Query: 671 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 730
VV+PYNS+LT ++DC ++DN A+ I L +E PT+ N L+ ++S+
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAS 239
Query: 731 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVAEITNACFE 789
T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQ 299
Query: 790 PANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFK 844
N MV R KY++ + +G+V P V+ ++ I+ ++ F++W P +
Sbjct: 300 TKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQ 359
Query: 845 VGINYQPPTV 854
V ++ + P V
Sbjct: 360 VALSRKSPYV 369
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 252 bits (645), Expect = 1e-78
Identities = 74/203 (36%), Positives = 99/203 (48%), Gaps = 16/203 (7%)
Query: 541 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 600
F G G P AV VDLEP V+D VR T Q +PE L +GK A NN+ RG
Sbjct: 1 KIKVFGVGGGG---PNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLG 57
Query: 601 T-----IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGK 655
+G+E + LD IR+ + G I GGGTG+G ++ E +YG
Sbjct: 58 AGADPEVGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGI 113
Query: 656 KSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 715
+ + P VV PYN+ L EH D ++DN+A+ DIC R L + RP
Sbjct: 114 LT-VAVVTK--PFSFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRKLPL-RPA 169
Query: 716 YTNLNRLIGQIVSSITASLRFDG 738
+ + N L+ Q VS IT +RF G
Sbjct: 170 FKDANDLLAQAVSGITDLIRFPG 192
Score = 236 bits (604), Expect = 1e-72
Identities = 71/205 (34%), Positives = 95/205 (46%), Gaps = 18/205 (8%)
Query: 48 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSG 107
F G G P AV VDLEP V+D VR T Q +PE L +GK A G
Sbjct: 1 KIKVFGVGGGG---PNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWT--RG 55
Query: 108 HYT-----IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDY 162
+G+E + LD IR+ + G I GGGTG+G ++ E +Y
Sbjct: 56 LGAGADPEVGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EY 111
Query: 163 GKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIER 222
G + + P VV PYN+ L EH D ++DN+A+ DIC R L + R
Sbjct: 112 GILT-VAVVTK--PFSFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRKLPL-R 167
Query: 223 PTYTNLNRLIGQIVSSITASLRFDG 247
P + + N L+ Q VS IT +RF G
Sbjct: 168 PAFKDANDLLAQAVSGITDLIRFPG 192
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 249 bits (639), Expect = 2e-77
Identities = 95/222 (42%), Positives = 123/222 (55%), Gaps = 13/222 (5%)
Query: 497 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 556
I I VG AG IGNA WEL C EHGI PDG + D N FF E+G G + PR
Sbjct: 2 IVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHA-------DKINVFFEESGDGVYGPR 54
Query: 557 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 616
+ +D +P V++E++ G +LF L G E A NN A G+YT KE + L+ IRK
Sbjct: 55 FIAIDTDPQVLNEIKAGN--KLFIGNNLTKGLEGAGNNPAVGYYTH-KEAAEESLEEIRK 111
Query: 617 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 676
++C GL GF I GGGTGSG ++ E L YG L A+ P S VV P
Sbjct: 112 ELEKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELYG---ALTVAVVTFPFTSEGVVRP 168
Query: 677 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 718
YN+IL +EHSD ++DN+A+ +IC LDI+ P + N
Sbjct: 169 YNAILGLKELIEHSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
Score = 232 bits (594), Expect = 5e-71
Identities = 92/225 (40%), Positives = 121/225 (53%), Gaps = 17/225 (7%)
Query: 4 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 63
I I VG AG IGNA WEL C EHGI PDG + D N FF E+G G + PR
Sbjct: 2 IVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHA-------DKINVFFEESGDGVYGPR 54
Query: 64 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYS-GHYTIGKEIVDLVLDR 122
+ +D +P V++E++ G +LF L G E A + G+YT KE + L+
Sbjct: 55 FIAIDTDPQVLNEIKAGN--KLFIGNNLTKGLEGAG---NNPAVGYYTH-KEAAEESLEE 108
Query: 123 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 182
IRK ++C GL GF I GGGTGSG ++ E L YG L A+ P S V
Sbjct: 109 IRKELEKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELYG---ALTVAVVTFPFTSEGV 165
Query: 183 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 227
V PYN+IL +EHSD ++DN+A+ +IC LDI+ P + N
Sbjct: 166 VRPYNAILGLKELIEHSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 225 bits (575), Expect = 1e-69
Identities = 62/131 (47%), Positives = 82/131 (62%), Gaps = 5/131 (3%)
Query: 264 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 323
PR+HF + YAP+ S KA H + SV E+T F+P N MV CDPRHGKY++C +L RGD
Sbjct: 1 PRLHFLMTGYAPLTSKGKASHRKTSVLELTRQLFDPKNMMVACDPRHGKYLSCALLIRGD 60
Query: 324 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTT 383
V PK+V+ AI I+ K + FV+W P KV I PP +PG D+ + ML+NTT
Sbjct: 61 VSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAICDVPPYGLPGSDV-----SGLMLANTT 115
Query: 384 AIAEAWARLDH 394
AI E + R+
Sbjct: 116 AIQELFKRILE 126
Score = 196 bits (500), Expect = 6e-59
Identities = 53/107 (49%), Positives = 70/107 (65%)
Query: 755 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 814
PR+HF + YAP+ S KA H + SV E+T F+P N MV CDPRHGKY++C +L RGD
Sbjct: 1 PRLHFLMTGYAPLTSKGKASHRKTSVLELTRQLFDPKNMMVACDPRHGKYLSCALLIRGD 60
Query: 815 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 861
V PK+V+ AI I+ K + FV+W P KV I PP +PG D++
Sbjct: 61 VSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAICDVPPYGLPGSDVS 107
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 189 bits (481), Expect = 3e-52
Identities = 106/471 (22%), Positives = 197/471 (41%), Gaps = 64/471 (13%)
Query: 3 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 62
+++ +GQ G Q+G+ ++ E D+ D+ FFSE G+ +
Sbjct: 2 VVTVQLGQCGNQLGHELFDTLAKE------ASSSDDEGYKYERDAQERFFSEKSDGQPIA 55
Query: 63 RAVFVDLEPTVVDEVRTGTYRQLFH--PEQLITGKEDAARQ--IGEYSGHYTIGKEIVDL 118
R+V VD+EP V++ + + + + +I + + G Y H G +I +
Sbjct: 56 RSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYG-YYVH---GPQIKED 111
Query: 119 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV 178
+LD IRK ++C +GFL+ HS GGTGSG S + E L +Y + L + P
Sbjct: 112 ILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVV--WPYT 169
Query: 179 STAV-VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIG-QIV 236
+ V V+ YN++LT E SD +++N+ I+ IC + +++ + +++N++I Q+
Sbjct: 170 TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLA 229
Query: 237 SSITASLRFDGALNVD-------LTEFQTNLVPYPRIHFPLVTYAPVIS----AEKAYHE 285
S + SL G+ L + +L P+P + P + A +
Sbjct: 230 SLLQPSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSW 289
Query: 286 QLSVAE-----ITNACFEPANQMVKCDP------------RHG-KYMACCMLYRGDVVPK 327
+ I + E H K +A ++ RG V
Sbjct: 290 SALLKRLHQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTS 349
Query: 328 DVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 387
+ + +V+W P+ + I+ + +K +++V ++SN+ I +
Sbjct: 350 ADERKF-----RDPLLYVNWSPSPVRFSISSHKRS------FSKYEKSVTLVSNSQTIID 398
Query: 388 AWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE---KDYEE 435
+ K M+A A++H Y G+EE +F + A LE Y+
Sbjct: 399 PLDNILEKAWNMFASGAYLHQYEKYGLEEEDF---LDAFATLEQIIASYKN 446
Score = 173 bits (441), Expect = 6e-47
Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 19/285 (6%)
Query: 496 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 555
+++ +GQ G Q+G+ ++ E D+ D+ FFSE G+ +
Sbjct: 2 VVTVQLGQCGNQLGHELFDTLAKE------ASSSDDEGYKYERDAQERFFSEKSDGQPIA 55
Query: 556 RAVFVDLEPTVVDEVRTGTYRQLFH--PEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
R+V VD+EP V++ + + + + +I + + NN+A G+Y G +I + +LD
Sbjct: 56 RSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDL 115
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRK ++C +GFL+ HS GGTGSG S + E L +Y + L + P + V
Sbjct: 116 IRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVV--WPYTTGEV 173
Query: 674 -VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIG-QIVSSIT 731
V+ YN++LT E SD +++N+ I+ IC + +++ + +++N++I Q+ S +
Sbjct: 174 IVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQ 233
Query: 732 ASLRFDGALNVD-------LTEFQTNLVPYPRIHFPLVTYAPVIS 769
SL G+ L + +L P+P + P +
Sbjct: 234 PSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMP 278
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 101 bits (255), Expect = 2e-25
Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 34/150 (22%)
Query: 249 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE--ITNACFEPANQMVKC 306
+NVD + +T +VP F ++ P +A L AE I++ E +N M
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPASGENRA----LEAAELAISSPLLEDSNIMGAK 53
Query: 307 DPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT-IQFVDWCPTGFKVGINYQPPTVVP 365
+ D+ K+VN A+ I+ K F+ W P +
Sbjct: 54 GVLV--NITGGP----DLTLKEVNEAMERIREKADPDAFIIWG------------PVIDE 95
Query: 366 GGDLAKVQRAVCMLSN-TTAIAEAWARLDH 394
++ ++ T I + RL
Sbjct: 96 -----ELGGDEIRVTVIATGIGSLFKRLSE 120
Score = 91.5 bits (228), Expect = 6e-22
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 740 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE--ITNACFEPANQMVKC 797
+NVD + +T +VP F ++ P +A L AE I++ E +N M
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPASGENRA----LEAAELAISSPLLEDSNIMGAK 53
Query: 798 DPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT-IQFVDWCP-TGFKVG 846
+ D+ K+VN A+ I+ K F+ W P ++G
Sbjct: 54 GVLV--NITGGP----DLTLKEVNEAMERIREKADPDAFIIWGPVIDEELG 98
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 38.5 bits (90), Expect = 0.013
Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 16/218 (7%)
Query: 539 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 598
D+ N +G G V A+ ++ + ++ Q + G
Sbjct: 17 DALNRHDKRSGFGYCV-GALAINTAKNDLKGLKHIPAEDRILIGQSEVKGHGVGADRELG 75
Query: 599 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSK 658
+ +E ++ V+ I L+ GGGTGSG +L + L Y +
Sbjct: 76 A-EVAEEDLEEVMRAIDDRGTSDA--DAILVIAGLGGGTGSGGAPVLAKELKERY---EE 129
Query: 659 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 718
+A+ P N+ + E +D + DN+A R+ +E Y
Sbjct: 130 PVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWK---RKGESVEE-AYDR 185
Query: 719 LNRLIGQIVSSITASLRFDGALNV-----DLTEFQTNL 751
+N I + + + + + +V D +E L
Sbjct: 186 INEEIARRIGLLLRAGEANAGDSVGESVLDASEVINTL 223
Score = 36.9 bits (86), Expect = 0.036
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 14/153 (9%)
Query: 113 KEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAI 172
+E ++ V+ I L+ GGGTGSG +L + L Y + +A+
Sbjct: 80 EEDLEEVMRAIDDRGTSDA--DAILVIAGLGGGTGSGGAPVLAKELKERY---EEPVYAL 134
Query: 173 YPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI 232
P N+ + E +D + DN+A R+ +E Y +N I
Sbjct: 135 GVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWK---RKGESVEE-AYDRINEEI 190
Query: 233 GQIVSSITASLRFDGALNV-----DLTEFQTNL 260
+ + + + + +V D +E L
Sbjct: 191 ARRIGLLLRAGEANAGDSVGESVLDASEVINTL 223
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 37.7 bits (88), Expect = 0.025
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 121 DRIRKLADQCTGLQGF-LIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP--- 176
DR+R ++C LQGF ++ G +G G + +E L +YGK S L + P
Sbjct: 139 DRLRFYVEECDYLQGFQVLCDLHDGFSGVG--AKCLEHLQDEYGKASLLFPGLPPVIPPD 196
Query: 177 -QVSTAVVEPYNSILTTHTTLEHSD 200
+ N+ L EHS
Sbjct: 197 ASSDKNSIRVLNTALGLAQLSEHSS 221
Score = 37.7 bits (88), Expect = 0.025
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 612 DRIRKLADQCTGLQGF-LIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP--- 667
DR+R ++C LQGF ++ G +G G + +E L +YGK S L + P
Sbjct: 139 DRLRFYVEECDYLQGFQVLCDLHDGFSGVG--AKCLEHLQDEYGKASLLFPGLPPVIPPD 196
Query: 668 -QVSTAVVEPYNSILTTHTTLEHSD 691
+ N+ L EHS
Sbjct: 197 ASSDKNSIRVLNTALGLAQLSEHSS 221
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 35.8 bits (83), Expect = 0.066
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 418 EFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTKLTVGEGMEE-----GEF 472
E + L ALE + E++ + E E R R + KL+ + E E
Sbjct: 39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEI 98
Query: 473 SEAREDLAALEKDYEEVGMDSRECIS 498
A+E + +LE + E+ M+ E +
Sbjct: 99 QIAKERINSLEDELAEL-MEEIEKLE 123
Score = 33.1 bits (76), Expect = 0.45
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 416 EGEFSEAREDLAALEKDYEEVGMDSVEG-EGEETNTRARHETLPTKLTVGEGMEEGEFSE 474
E A+E + +LE + E+ M+ +E E E + + R E L L E E E +E
Sbjct: 95 NIEIQIAKERINSLEDELAEL-MEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE 153
Query: 475 AREDLAALEKDYEEV 489
RE+ L EE+
Sbjct: 154 IREEGQELSSKREEL 168
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 35.6 bits (82), Expect = 0.087
Identities = 31/179 (17%), Positives = 68/179 (37%), Gaps = 16/179 (8%)
Query: 89 EQLITGKEDAARQIGE-------YSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 141
+ L+ + + IG+ + +G E + V + I + + I
Sbjct: 37 QDLLGLEAENRVLIGQARTKGLGAGANPELGAEAAEEVQEAIDNIPV---HVDMVFITAG 93
Query: 142 FGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDC 201
GGGTG+G ++ E L + L A+ P + N+ T + D
Sbjct: 94 LGGGTGTGGAPVVAEHLK----RIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDN 149
Query: 202 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 260
++ NE + I +E + + + ++ + V + ++ +G +NVD + + +
Sbjct: 150 LMVIPNEKLRQIG-EKASLE-GAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVM 206
Score = 34.1 bits (78), Expect = 0.27
Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 9/150 (6%)
Query: 602 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF 661
+G E + V + I + + I GGGTG+G ++ E L + L
Sbjct: 66 LGAEAAEEVQEAIDNIPV---HVDMVFITAGLGGGTGTGGAPVVAEHLK----RIGTLTV 118
Query: 662 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 721
A+ P + N+ T + D ++ NE + I +E + + +
Sbjct: 119 AVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIG-EKASLE-GAFDHADE 176
Query: 722 LIGQIVSSITASLRFDGALNVDLTEFQTNL 751
++ + V + ++ +G +NVD + + +
Sbjct: 177 VLVRAVGGLFGAIEIEGEINVDFADVKNVM 206
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 35.2 bits (81), Expect = 0.18
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 416 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTKLTVGEGMEE--GEFS 473
+E R A E D E D+ E E R TL + +VG ++E +
Sbjct: 874 ATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTL--EESVGAMVDEIRARLA 931
Query: 474 EAREDLAALEK 484
E R LA+ +
Sbjct: 932 ETRAALASGGR 942
>gnl|CDD|227622 COG5306, COG5306, Uncharacterized conserved protein [Function
unknown].
Length = 621
Score = 34.5 bits (79), Expect = 0.29
Identities = 36/134 (26%), Positives = 49/134 (36%), Gaps = 21/134 (15%)
Query: 36 PSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 95
+ T G GD F+ FF + F + P D VR + + E I G
Sbjct: 299 ETAPTKGNGDSVFDLFFDD-----------FENPNPDPWDFVRDSI--AIANGETYIAGS 345
Query: 96 EDAARQIG--EYSGH-YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS-FGGGTGSGFT 151
A R I EYSG + V+ V+D + D T L +F + F G G
Sbjct: 346 NFAIRTISDIEYSGENAIRFRMKVEGVIDSGAQYEDN-TSLI--PLFPANFVSGGGLAIW 402
Query: 152 SLLMERLS-VDYGK 164
S S D G+
Sbjct: 403 SGFWVLPSDNDGGR 416
Score = 31.0 bits (70), Expect = 3.5
Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 23/134 (17%)
Query: 529 PSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 588
+ T G GD F+ FF + F + P D VR + + E I G
Sbjct: 299 ETAPTKGNGDSVFDLFFDD-----------FENPNPDPWDFVRDSI--AIANGETYIAGS 345
Query: 589 EDAA-----NNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS-FGGGTGSGFT 642
A Y+ + + V+ V+D + D T L +F + F G G
Sbjct: 346 NFAIRTISDIEYSGENAIRFRMKVEGVIDSGAQYEDN-TSLI--PLFPANFVSGGGLAIW 402
Query: 643 SLLMERLS-VDYGK 655
S S D G+
Sbjct: 403 SGFWVLPSDNDGGR 416
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 34.2 bits (78), Expect = 0.42
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 173 YPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN-EAIYDICRRNLDIERPTYTNLNRL 231
YP Q + + N I+ E D D+ EA+ D+C +++ +++L
Sbjct: 21 YPRLQDPSREL---NVIIDQLAVSEQID--ASPDSLEALIDLCHDFPHLQKELEILISKL 75
Query: 232 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTY 273
VS + + + NV+ T Q NL RI L +
Sbjct: 76 KTSTVSDNSEDYNYLVSHNVNFTIPQCNLENKGRIFQLLKSK 117
Score = 34.2 bits (78), Expect = 0.42
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 664 YPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN-EAIYDICRRNLDIERPTYTNLNRL 722
YP Q + + N I+ E D D+ EA+ D+C +++ +++L
Sbjct: 21 YPRLQDPSREL---NVIIDQLAVSEQID--ASPDSLEALIDLCHDFPHLQKELEILISKL 75
Query: 723 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTY 764
VS + + + NV+ T Q NL RI L +
Sbjct: 76 KTSTVSDNSEDYNYLVSHNVNFTIPQCNLENKGRIFQLLKSK 117
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 33.5 bits (77), Expect = 0.54
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 17/102 (16%)
Query: 418 EFSEAREDLAALEKDYEEVGMDSVEGEGEETN-------TRARHETLPTKLTVGEGMEEG 470
E E RE+L LE + E++ E E E R R E L + + + E
Sbjct: 245 EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD--DLLAEA 302
Query: 471 EFSEA--------REDLAALEKDYEEVGMDSRECISIHVGQA 504
+A RE+L +++ + + R H +A
Sbjct: 303 GLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEA 344
Score = 31.2 bits (71), Expect = 3.2
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 415 EEGEFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTKLTVGEGMEEGEFSE 474
EE E + E L LE + E+ + E + R + L E E
Sbjct: 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLE--------EHEE 248
Query: 475 AREDLAALEKDYEEVGMDSRECIS 498
RE+L LE + E++ E
Sbjct: 249 RREELETLEAEIEDLRETIAETER 272
Score = 30.8 bits (70), Expect = 3.7
Identities = 24/85 (28%), Positives = 27/85 (31%), Gaps = 12/85 (14%)
Query: 416 EGEFSEAREDLAALEKDYEEVGMDSVEGEGE--------ETNTRARHETLPTKLTVGEGM 467
E E RE+ A LE + EE + E E R R P L E
Sbjct: 355 EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL-RERFGDAPVDLGNAEDF 413
Query: 468 EE---GEFSEAREDLAALEKDYEEV 489
E E E RE A LE
Sbjct: 414 LEELREERDELREREAELEATLRTA 438
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2. In many but not
all taxa, there is a conserved real translational
frameshift at a TGA codon. RF-2 helps terminate
translation at TGA codons and can therefore regulate its
own production by readthrough when RF-2 is insufficient.
There is a PFAM model called "RF-1" for the superfamily
of RF-1, RF-2, mitochondrial, RF-H, etc [Protein
synthesis, Translation factors].
Length = 364
Score = 33.2 bits (76), Expect = 0.61
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 449 NTRARHETLPT--KLTVGEGMEEGEFSEAREDLAALEKDYEEV--------GMDSREC-I 497
+ E L +L V E EE F+E +L ALEK E+ D+ +
Sbjct: 70 ELKNSLEDLSELLELAVEEDDEET-FNELDAELKALEKKLAELELRTMLSGEYDANNAYL 128
Query: 498 SIHVGQAGVQ 507
+I G G +
Sbjct: 129 TIQAGAGGTE 138
>gnl|CDD|238563 cd01143, YvrC, Periplasmic binding protein YvrC. These proteins
are predicted to function as initial receptors in ABC
transport of metal ions in eubacteria and archaea. They
belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct fold and ligand
binding mechanism. A typical TroA protein is comprised
of two globular subdomains connected by a single helix
and can bind the metal ion in the cleft between these
domains.
Length = 195
Score = 30.7 bits (70), Expect = 2.0
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 67 VDLEPTVV---DEVRTGTYRQL---------FHPEQLITGKEDAARQIGEYSGHYTIGKE 114
V L+P +V +L + D IG+ +G ++
Sbjct: 57 VALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAEEEAEK 116
Query: 115 IVDLVLDRIRKLADQCTGLQGFLIFH--------SFGGGT 146
+V + +I K+ D+ ++ ++ + G T
Sbjct: 117 LVKEMKQKIDKVKDKGKTIKKSKVYIEVSLGGPYTAGKNT 156
>gnl|CDD|221362 pfam11991, Trp_DMAT, Tryptophan dimethylallyltransferase. This
family of proteins represents tryptophan
dimethylallyltransferase (EC:2.5.1.34), which catalyzes
the first step of ergot alkaloid biosynthesis. Ergot
alkaloids, which are produced by endophyte fungi, can
enhance plant host fitness, but also cause livestock
toxicosis to host plants. This protein is found in
bacteria and eukaryotes. Proteins in this family are
typically between 390 to 465 amino acids in length.
Length = 358
Score = 31.1 bits (71), Expect = 2.3
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 112 GKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFA 171
G+ + +LV + IR+L ++ L + + S LSVD +K
Sbjct: 179 GQPVSELVFEAIRRLDEKGGLLPALDLLEEYLASRPGVTLSPEF--LSVDLVDPAKSRLK 236
Query: 172 IY-PAPQVSTAVVE 184
IY PQVS A VE
Sbjct: 237 IYLATPQVSLASVE 250
Score = 31.1 bits (71), Expect = 2.3
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 603 GKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFA 662
G+ + +LV + IR+L ++ L + + S LSVD +K
Sbjct: 179 GQPVSELVFEAIRRLDEKGGLLPALDLLEEYLASRPGVTLSPEF--LSVDLVDPAKSRLK 236
Query: 663 IY-PAPQVSTAVVE 675
IY PQVS A VE
Sbjct: 237 IYLATPQVSLASVE 250
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated.
Length = 367
Score = 31.4 bits (72), Expect = 2.3
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 465 EGMEEGEFSEAREDLAALEKDYEEVGM--------DSRECI-SIHVGQAGV 506
E +E +EA +L ALEK + + D+ I +IH G G
Sbjct: 87 EEDDEETLAEAEAELKALEKKLAALELERLLSGEYDANNAILTIHAGAGGT 137
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.8 bits (70), Expect = 4.4
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 20/89 (22%)
Query: 416 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEET---------------NTRARHETLPTK 460
E + E E+LA L K+ EE+G +SVE E EE + E +
Sbjct: 562 EKKLDELEEELAELLKELEELGFESVE-ELEERLKELEPFYNEYLELKDAEKELEREEKE 620
Query: 461 LTVGEGMEEGEFSEAREDLAALEKDYEEV 489
L E E +A E+LA EK EE+
Sbjct: 621 LK----KLEEELDKAFEELAETEKRLEEL 645
Score = 30.4 bits (69), Expect = 5.6
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 415 EEGEFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTKLTVGEGMEEGEFSE 474
E E +A E+LA EK EE + E EE + E E+ E
Sbjct: 624 LEEELDKAFEELAETEKRLEE-----LRKELEELEKKYSEEEYEEL--------REEYLE 670
Query: 475 AREDLAALEKDYEE 488
+LA L + EE
Sbjct: 671 LSRELAGLRAELEE 684
>gnl|CDD|222394 pfam13809, Tubulin_2, Tubulin like. Many of the residues conserved
in Tubulin, pfam00091, are also highly conserved in this
family.
Length = 345
Score = 30.4 bits (69), Expect = 4.5
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 88 PEQLITGKEDAA--RQIGE--YSGHYTIGKEIVDLVLDRIRKLADQCTGLQG------FL 137
E + + + A R +G + +Y I + +++ G +
Sbjct: 96 VENITSIEAGAGQIRAVGRLAFFHNYQ---AIRQAIETALKRTFLLSEGQKVGEGGVNVF 152
Query: 138 IFHSFGGGTGSG 149
+ S GGTGSG
Sbjct: 153 VVGSLSGGTGSG 164
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.4 bits (69), Expect = 5.7
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 416 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTKLTVGEGMEEG---EF 472
E E + +A E++ E+ + E E A E L ++ + E+
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
Query: 473 SEAREDLAALEKDYEEVGMDSRE 495
+E +E+L L + EEV + E
Sbjct: 360 AELKEELEDLRAELEEVDKEFAE 382
>gnl|CDD|221207 pfam11754, Velvet, Velvet factor. The velvet factor is conserved
in many fungal species and is found to have gained
different roles depending on the organism's need,
expanding the conserved role in developmental
programmes. The velvet factor orthologues can be adapted
to the fungal-specific life cycle and may be involved in
diverse functions such as sclerotia formation and toxin
production, as in A. parasiticus, nutrition-dependent
sporulation, as in A. fumigatus, or the
microconidia-to-macroconidia ratio and cell wall
formation, as in the heterothallic fungus Fusarium
verticilloides.
Length = 189
Score = 29.2 bits (66), Expect = 6.3
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 11/53 (20%)
Query: 186 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 238
N H TLE++ I + N L G +VSS
Sbjct: 53 QNPYFFLHCTLENAR-----------GIAEGRVVTPSADSPNTPVLTGTLVSS 94
Score = 29.2 bits (66), Expect = 6.3
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 11/53 (20%)
Query: 677 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 729
N H TLE++ I + N L G +VSS
Sbjct: 53 QNPYFFLHCTLENAR-----------GIAEGRVVTPSADSPNTPVLTGTLVSS 94
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 29.9 bits (67), Expect = 6.9
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 442 EGEGEETNTRARHETLPTKLTVGEGMEEGEFSEAREDLAALEKDYEEVGMD 492
ET +RH K G+G G SE+ E
Sbjct: 69 TESDTETAEESRHGE---KEERGQGGPSGSGSESVGSPTPSPSGSAEELAS 116
>gnl|CDD|220178 pfam09321, DUF1978, Domain of unknown function (DUF1978). Members
of this family are found in various hypothetical
proteins produced by the bacterium Chlamydia pneumoniae.
Their exact function has not, as yet, been identified.
Length = 241
Score = 29.4 bits (66), Expect = 7.2
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 418 EFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTKLTVGEGMEEGEFSEARE 477
E E E L AL+ Y EV E E +ET + T + +E E +
Sbjct: 114 EIEEVEERLEALQALYPEVSEREDETEKQETVS----SYARDLETALDHIEV----EYVQ 165
Query: 478 DLAALEKDYEEVGMDSRE 495
+ ++DY + D +E
Sbjct: 166 CVRE-QEDYWKE-EDVKE 181
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 29.6 bits (67), Expect = 8.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 408 WYVGEGMEEGEFSE---AREDLAALEKDYEEVGMDSVEGEGEETNTRAR 453
W +G ++ E RE++A L K + MD EG+E RA+
Sbjct: 384 WKIGWRVKREVGEETLVGREEIAELVKRF----MDLESEEGKEMRRRAK 428
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,333,622
Number of extensions: 4433787
Number of successful extensions: 3929
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3819
Number of HSP's successfully gapped: 82
Length of query: 864
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 759
Effective length of database: 6,280,432
Effective search space: 4766847888
Effective search space used: 4766847888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)