RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15389
(864 letters)
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 811 bits (2096), Expect = 0.0
Identities = 431/451 (95%), Positives = 439/451 (97%), Gaps = 10/451 (2%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDA----ARQIGEYSGHYTIGKEIV 116
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDA AR GHYTIGKEI+
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR------GHYTIGKEII 115
Query: 117 DLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP 176
DLVLDRIRKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAP
Sbjct: 116 DLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP 175
Query: 177 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 236
QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIV
Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIV 235
Query: 237 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 296
SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNAC
Sbjct: 236 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNAC 295
Query: 297 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 356
FEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGI
Sbjct: 296 FEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGI 355
Query: 357 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 416
NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 415
Query: 417 GEFSEAREDLAALEKDYEEVGMDSVEGEGEE 447
GEFSEARED+AALEKDYEEVG+DSVEGEGEE
Sbjct: 416 GEFSEAREDMAALEKDYEEVGVDSVEGEGEE 446
Score = 708 bits (1830), Expect = 0.0
Identities = 361/371 (97%), Positives = 368/371 (99%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 854 VVPGGDLAKMS 864
VVPGGDLAK+
Sbjct: 362 VVPGGDLAKVQ 372
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 785 bits (2029), Expect = 0.0
Identities = 174/451 (38%), Positives = 263/451 (58%), Gaps = 20/451 (4%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSD--LQLERINVYYNEATGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDA----ARQIGEYSGHYTIGKEIV 116
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A A+ GHYT G E+V
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAK------GHYTEGAELV 113
Query: 117 DLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP 176
D VLD +RK ++ C LQGF + HS GGGTGSG +LL+ ++ +Y + F++ P+P
Sbjct: 114 DSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP 173
Query: 177 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 236
+VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +
Sbjct: 174 KVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATM 233
Query: 237 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 296
S +T LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 234 SGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 297 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 356
F+ N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 294 FDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 353
Query: 357 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 416
PP ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E
Sbjct: 354 CDIPPR--------GLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 417 GEFSEAREDLAALEKDYEEVGMDSVEGEGEE 447
EF+EA ++ L +Y++ + + +GE
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATADEQGEF 436
Score = 679 bits (1754), Expect = 0.0
Identities = 150/363 (41%), Positives = 219/363 (60%), Gaps = 2/363 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSD--LQLERINVYYNEATGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + HS GGGTGSG +LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR 359
Query: 854 VVP 856
+
Sbjct: 360 GLK 362
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 775 bits (2002), Expect = 0.0
Identities = 133/457 (29%), Positives = 237/457 (51%), Gaps = 20/457 (4%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE I++ +GQ G QIG W+ C EHGI P+ + T G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEG--TDRKDVFFYQADDEHY 60
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AARQIGEYSGHYTIGKEIVDL 118
+PRAV +DLEP V+ + Y +L++PE + + A ++ ++ G++I +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAG---NNWASGFSQGEKIHED 117
Query: 119 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP-Q 177
+ D I + AD L+GF++ HS GGTGSG S L+ERL+ Y KK ++++P +
Sbjct: 118 IFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDE 177
Query: 178 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVS 237
+S VV+PYNS+LT +++DC ++DN A+ I L I+ P+++ +N+L+ I+S
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 238 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAE-KAYHEQLSVAEITNAC 296
+ T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V ++
Sbjct: 238 ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRL 297
Query: 297 FEPANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFK 353
+P N MV Y+A + +G+V P V+ ++ I+ ++ F+ W P +
Sbjct: 298 LQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQ 357
Query: 354 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 413
V ++ + P + + + M++N T+I+ + R ++D + + AF+ + E
Sbjct: 358 VALSRKSPYLPSAHRV-----SGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKED 412
Query: 414 MEEGEFSE---AREDLAALEKDYEEVGMDSVEGEGEE 447
M + F E +RE + L +Y G +
Sbjct: 413 MFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQ 449
Score = 686 bits (1772), Expect = 0.0
Identities = 120/375 (32%), Positives = 207/375 (55%), Gaps = 10/375 (2%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE I++ +GQ G QIG W+ C EHGI P+ + T G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEG--TDRKDVFFYQADDEHY 60
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVL 611
+PRAV +DLEP V+ + Y +L++PE + + A NN+A G ++ G++I + +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 612 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP-QVS 670
D I + AD L+GF++ HS GGTGSG S L+ERL+ Y KK ++++P ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 671 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 730
VV+PYNS+LT +++DC ++DN A+ I L I+ P+++ +N+L+ I+S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 731 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAE-KAYHEQLSVAEITNACFE 789
T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 790 PANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 846
P N MV Y+A + +G+V P V+ ++ I+ ++ F+ W P +V
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 847 INYQPPTVVPGGDLA 861
++ + P + ++
Sbjct: 360 LSRKSPYLPSAHRVS 374
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 761 bits (1966), Expect = 0.0
Identities = 155/451 (34%), Positives = 247/451 (54%), Gaps = 17/451 (3%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQ-MPSDKTIGGGDDSFNTFFSETGAGK 59
I + +GQAG QI + W+ CLEHGI P G SF + E+ +G
Sbjct: 4 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 63
Query: 60 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLV 119
+VPRA+ VDLEP+V+D V+ LF+P LI+ E A G+ G+E++ V
Sbjct: 64 YVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFA--VGYLGAGREVLPEV 120
Query: 120 LDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVS 179
+ R+ D+C + G ++ H+ GGGTGSGF +LL+E L YG+ L A+ P+PQVS
Sbjct: 121 MSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVS 180
Query: 180 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 239
+ V EPYN++ +T +D + DNEA++D+ R +IE PT +LN LI + ++ I
Sbjct: 181 SVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGI 240
Query: 240 TASLRFDGALNVD--LTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACF 297
TAS+RF G L V+ L E TNLVP P +HF + +AP+ +++ E+L + E+ + F
Sbjct: 241 TASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLF 300
Query: 298 EPANQMVKCDPRHGKYMACCMLYRGDVVPKDV-NAAIATIKTKRTIQFVDWCPTGFKVGI 356
+ + C P G++++ +LYRG + K + +AA+A ++ K W PT FK+G
Sbjct: 301 DNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKL--PLTYWIPTAFKIGY 358
Query: 357 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 416
QP ++++ +L+N T IA R+ H FD ++ ++AF +WY+ EGM E
Sbjct: 359 VEQPGI--------SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSE 410
Query: 417 GEFSEAREDLAALEKDYEEVGMDSVEGEGEE 447
+ + R L + Y+ + + ++
Sbjct: 411 EQINVLRASAQELVQSYQVAEESGAKAKVQD 441
Score = 669 bits (1728), Expect = 0.0
Identities = 138/370 (37%), Positives = 210/370 (56%), Gaps = 7/370 (1%)
Query: 491 MDSRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQ-MPSDKTIGGGDDSFNTFFSETG 549
M I + +GQAG QI + W+ CLEHGI P G SF + E+
Sbjct: 1 MKVNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESS 60
Query: 550 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 609
+G +VPRA+ VDLEP+V+D V+ LF+P LI+ E A N+A G+ G+E++
Sbjct: 61 SGSYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPE 119
Query: 610 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV 669
V+ R+ D+C + G ++ H+ GGGTGSGF +LL+E L YG+ L A+ P+PQV
Sbjct: 120 VMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQV 179
Query: 670 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 729
S+ V EPYN++ +T +D + DNEA++D+ R +IE PT +LN LI + ++
Sbjct: 180 SSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAG 239
Query: 730 ITASLRFDGALNVD--LTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 787
ITAS+RF G L V+ L E TNLVP P +HF + +AP+ +++ E+L + E+ +
Sbjct: 240 ITASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSL 299
Query: 788 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDV-NAAIATIKTKRTIQFVDWCPTGFKVG 846
F+ + C P G++++ +LYRG + K + +AA+A ++ K W PT FK+G
Sbjct: 300 FDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKL--PLTYWIPTAFKIG 357
Query: 847 INYQPPTVVP 856
QP
Sbjct: 358 YVEQPGISHR 367
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 757 bits (1956), Expect = 0.0
Identities = 161/438 (36%), Positives = 239/438 (54%), Gaps = 16/438 (3%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE +SIHVGQ G QI ++ W L EHG+ G + + + FF + GK+
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSN-AAANSNMEVFFHKVRDGKY 60
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAV VDLEP V+ + G QLF ++ AA G+ G++++D ++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWA--RGYNVEGEKVIDQIM 118
Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 180
+ I ++ GLQGFL+ HS GGG+GSG SL++ERL Y KK F++ P+P +S
Sbjct: 119 NVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISD 178
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
+ VEPYN+ILT L+++D A ++DNEA++ I + L+ P Y +LN +I IVSS+T
Sbjct: 179 SAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVT 237
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
ASLRF G LN DL+EF TNLVP+P HF ++AP+ A + + + ++ F
Sbjct: 238 ASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQD 297
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT--GFKVGINY 358
N D + G Y+A L+RGDV KDV+ +ATI ++++ + + P G K+G
Sbjct: 298 NFTAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAE 355
Query: 359 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 418
P L L N T IA + RL +FD+M+ A+ HWY G+
Sbjct: 356 TAPEGFASSGL--------ALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDM 407
Query: 419 FSEAREDLAALEKDYEEV 436
++AR +A L + Y +
Sbjct: 408 MAKARNQIATLAQSYRDA 425
Score = 673 bits (1738), Expect = 0.0
Identities = 146/370 (39%), Positives = 214/370 (57%), Gaps = 6/370 (1%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE +SIHVGQ G QI ++ W L EHG+ G + + + FF + GK+
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSN-AAANSNMEVFFHKVRDGKY 60
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAV VDLEP V+ + G QLF ++ AANN+ARG+ G++++D +++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
I ++ GLQGFL+ HS GGG+GSG SL++ERL Y KK F++ P+P +S +
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ILT L+++D A ++DNEA++ I + L+ P Y +LN +I IVSS+TAS
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTAS 239
Query: 734 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 793
LRF G LN DL+EF TNLVP+P HF ++AP+ A + + + ++ F N
Sbjct: 240 LRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNF 299
Query: 794 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT--GFKVGINYQP 851
D + G Y+A L+RGDV KDV+ +ATI ++++ + + P G K+G
Sbjct: 300 TAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETA 357
Query: 852 PTVVPGGDLA 861
P LA
Sbjct: 358 PEGFASSGLA 367
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex
structure, solution structure, CLIP, structural protein;
NMR {Homo sapiens}
Length = 36
Score = 61.1 bits (148), Expect = 2e-12
Identities = 29/31 (93%), Positives = 31/31 (100%)
Query: 417 GEFSEAREDLAALEKDYEEVGMDSVEGEGEE 447
GEFSEARED+AALEKDYEEVG+DSVEGEGEE
Sbjct: 1 GEFSEAREDMAALEKDYEEVGVDSVEGEGEE 31
Score = 53.0 bits (127), Expect = 1e-09
Identities = 23/26 (88%), Positives = 25/26 (96%)
Query: 470 GEFSEAREDLAALEKDYEEVGMDSRE 495
GEFSEARED+AALEKDYEEVG+DS E
Sbjct: 1 GEFSEAREDMAALEKDYEEVGVDSVE 26
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 9e-10
Identities = 98/593 (16%), Positives = 170/593 (28%), Gaps = 171/593 (28%)
Query: 150 FTSLL---MERLSVDYGKKSKLE----FAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA 202
F +L E + D + E F Y + V + V ++ +L L +
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL--CLTEFENC 94
Query: 203 FMVDNEAIYDICRRNLDIERPT----------YTNLNRLIGQIVSSITASLRFDGAL--N 250
++ N+ I+ + + L T Y + + + S F N
Sbjct: 95 YLEGND-IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 251 VDL-TEF--QTNLVPYPRIHFP-LV----TYAPVISAEKAYHEQLSVAEITNACFEPANQ 302
L F Q N Y F L TY ++ L + E
Sbjct: 154 AQLVAIFGGQGNTDDY----FEELRDLYQTYHVLV-------GDL-IKFSAETLSELIRT 201
Query: 303 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFK-VGI----N 357
+ + + + ++ + ++ P +G+ +
Sbjct: 202 TLDAEKVFTQGL-------------NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 358 YQPPTVVPG---GDLAKVQRAVCMLSNT----TAIAEA--WARLDHKFDLMYAKRAFVHW 408
Y + G G+L + S AIAE W + R +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE------SFFVSVRKAITV 302
Query: 409 --YVG-EGMEEGEFSEAREDLAALEKDYEEVGMDSVE-GEGEETNTRARHETLPTK-LTV 463
++G E + + LE DS+E EG P+ L++
Sbjct: 303 LFFIGVRCYEA--YPNTSLPPSILE--------DSLENNEGV-----------PSPMLSI 341
Query: 464 GEGMEEGEFSEAREDL-AALEKDYEEVGMDSRECISIHVG-QAGVQIGNACWELYCLEHG 521
+ +E + + K + + IS+ G + V G LY L
Sbjct: 342 -SNLT-------QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ-SLYGLNLT 392
Query: 522 IQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVD---------LEPTVVDEVRT 572
++ + PS G D FSE K F+ L P D +
Sbjct: 393 LR-KAKAPS------GLDQSRIPFSER---KLKFSNRFLPVASPFHSHLLVP-ASDLINK 441
Query: 573 GTYRQ--LFHPEQL-I----TGKEDAANNYARGHYT-IGKEIVDLVL-DRIR-KLADQCT 622
+ F+ + + I T D ++ R I + IVD ++ ++ + Q
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDT--FDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 623 GLQGFLIFH--SFGGGTGSGFTSLLME-------RL----------SVDYGKK 656
H FG G SG L R+ DYG K
Sbjct: 498 AT------HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 56.2 bits (135), Expect = 5e-08
Identities = 55/322 (17%), Positives = 92/322 (28%), Gaps = 134/322 (41%)
Query: 112 GKE------IVDLVLDRIRKLADQCTGLQ-GFLIFHSFGGGTGSGFTSLLMERLSVDYGK 164
G + V +R AD GF S+L D
Sbjct: 1632 GMDLYKTSKAAQDVWNR----ADNHFKDTYGF---------------SIL------DIVI 1666
Query: 165 KSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 224
+ + I+ + + E Y+++ I++
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAM--------------------IFETIVDGKLKTEKI 1706
Query: 225 YTNLNRLIGQIVSSITASLRF---DGALNVDLTEF-QTNLVPYPRIHFPLVTYAP----- 275
+ +N +S T F G L+ T+F Q P + L+ A
Sbjct: 1707 FKEINEHS----TSYT----FRSEKGLLS--ATQFTQ------PAL-T-LMEKAAFEDLK 1748
Query: 276 ---VISAEKAY--HEQLSVAEIT-NAC------FEPANQMVKCDPRHGKYMACCMLYRG- 322
+I A+ + H S+ E A E ++V YRG
Sbjct: 1749 SKGLIPADATFAGH---SLGEYAALASLADVMSIESLVEVVF--------------YRGM 1791
Query: 323 ---DVVPKD-----------VN-AAIATIKTKRTIQFVDWC-----PTGFKVGI-NYQPP 361
VP+D +N +A ++ +Q+V TG+ V I NY
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VERVGKRTGWLVEIVNYNVE 1849
Query: 362 --TVVPGGDLAKVQRAVCMLSN 381
V GDL + +L+
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNF 1871
Score = 51.2 bits (122), Expect = 2e-06
Identities = 50/266 (18%), Positives = 84/266 (31%), Gaps = 90/266 (33%)
Query: 409 YVGEGMEE-GEFSEARE--DLA--ALEKDYEEVGMDSVEGEGEETNTRARHETLPTKLTV 463
G GM+ A++ + A + Y +D V N P LT+
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-----NN--------PVNLTI 1674
Query: 464 GEGMEEGEFSEAREDLAAL------------EKDYEEVGMDSRECISIHVGQAGV----- 506
G E+G+ RE+ +A+ EK ++E+ S + G+
Sbjct: 1675 HFGGEKGK--RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQ 1730
Query: 507 --Q-----IGNACWELYCL-EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH----- 553
Q + A +E L G+ P D +F AG H
Sbjct: 1731 FTQPALTLMEKAAFED--LKSKGLIPA------------DATF--------AG-HSLGEY 1767
Query: 554 ---VPRAVFVDLEPTVVDEVRT-GTYRQLFHP--EQLITGKEDAANNYARGHYTIGKEIV 607
A + +E ++V+ V G Q+ P E + A N R + +E +
Sbjct: 1768 AALASLADVMSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 608 DLVLDRIRKLADQ--------CTGLQ 625
V++R+ K Q
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQ 1852
Score = 46.6 bits (110), Expect = 4e-05
Identities = 53/308 (17%), Positives = 91/308 (29%), Gaps = 130/308 (42%)
Query: 590 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 649
+ A+N+ + Y G I+D+V++ L H FGG G +R+
Sbjct: 1647 NRADNHFKDTY--GFSILDIVINNPVNLT-----------IH-FGGEKG--------KRI 1684
Query: 650 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 709
+Y S + F ++ T + + +T T + +
Sbjct: 1685 RENY---SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-------EKGLLS------- 1727
Query: 710 DIERPTYTNLNRLIGQ----IVS-SITASLRFDGALNVD-------LTEFQTNLVPYPRI 757
+T Q ++ + L+ G + D L E+
Sbjct: 1728 ---ATQFT-------QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA-------- 1769
Query: 758 HFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRG---- 813
L + A V+S E ++V YRG
Sbjct: 1770 ---LASLADVMS------------------IESLVEVVF--------------YRGMTMQ 1794
Query: 814 DVVPKD-----------VN-AAIATIKTKRTIQFVDWC-----PTGFKVGI-NYQPP--T 853
VP+D +N +A ++ +Q+V TG+ V I NY
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VERVGKRTGWLVEIVNYNVENQQ 1852
Query: 854 VVPGGDLA 861
V GDL
Sbjct: 1853 YVAAGDLR 1860
Score = 43.1 bits (101), Expect = 4e-04
Identities = 93/644 (14%), Positives = 181/644 (28%), Gaps = 243/644 (37%)
Query: 310 HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 369
HG + +L VP + ++ QF P PT D
Sbjct: 13 HGS-LEHVLL-----VPTASFFIASQLQE----QFNKILPE----------PTEGFAAD- 51
Query: 370 AKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 429
T AE + F+ YV +E + + + L
Sbjct: 52 ----------DEPTTPAELVGK-------------FLG-YVSSLVEPSKVGQFDQVLNLC 87
Query: 430 EKDYEEVGMDSVEGEGEETNTRARHETLPTKLTVGEGMEEGEFSEAREDLAALEKDYEEV 489
++E + EG + + A L + + + +E + K+Y
Sbjct: 88 LTEFENCYL-----EGNDIHALAAK--LLQE-------NDTTLVKTKELI----KNYITA 129
Query: 490 GMDSRECISIHVGQA---GVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFS 546
+ ++ A V GNA +L I GG + + +F
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNA--QLV----------------AIFGGQGNTDDYFE 171
Query: 547 E------TGAGKHVPRAVFVDLEPTVVDEVRTGT-----YRQLFHPEQLITGKEDAANN- 594
E T + + T+ + +RT + Q + + + + +
Sbjct: 172 ELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 595 --------------YARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFG------ 634
HY + +++ +L G G HS G
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGF---TPGELRSYLKGATG----HSQGLVTAVA 282
Query: 635 ---GGTGSGFTSLLMERLSVDYGKKSKLEFAI-------YPAPQVSTAVVEPYNSILTTH 684
+ F + + + + F I YP + +++E
Sbjct: 283 IAETDSWESFFVSVRKAI--------TVLFFIGVRCYEAYPNTSLPPSILE--------- 325
Query: 685 TTLEHSDCA--FM--VDN------EAIYDICRRNLDIERPTYTNL-NRLIGQ---IVSSI 730
+LE+++ M + N + + +L + +L N G +VS
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN---GAKNLVVSGP 382
Query: 731 TASLRFDGALNVDL-------TEFQTNLVPY----PRIH--FPLVTYAPVISAEKAYHEQ 777
SL LN+ L Q+ +P+ + F L +P +H
Sbjct: 383 PQSLY---GLNLTLRKAKAPSGLDQSR-IPFSERKLKFSNRF-LPVASP-------FHSH 430
Query: 778 LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV--------VP-------KDVNA 822
L PA+ ++ D L + +V +P D+
Sbjct: 431 L---------LVPASDLINKD-----------LVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 823 AIATIKTKRTIQF-----VDWCPTGFKVGINYQPPTVV---PGG 858
+I ++R + V W + ++ ++ PGG
Sbjct: 471 LSGSI-SERIVDCIIRLPVKW-----ETTTQFKATHILDFGPGG 508
Score = 38.1 bits (88), Expect = 0.014
Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 62/212 (29%)
Query: 4 ISIHV-GQAGVQIGNACWELY---CLEHGIQPDGQMPSDKTIGGGDDSFN--TFFSETGA 57
++IH G+ G +I E Y E DG++ ++K ++ TF SE G
Sbjct: 1672 LTIHFGGEKGKRIR----ENYSAMIFETI--VDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 58 GKH----------VPRAVFVDLE---PTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGE 104
+ +A F DL+ D G H +GE
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG------HS-------------LGE 1766
Query: 105 YS------GHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 158
Y+ +I + +V++V R + Q + L G + G ++ R+
Sbjct: 1767 YAALASLADVMSI-ESLVEVV--FYRGMTMQVAVPRDEL------GRSNYGMIAINPGRV 1817
Query: 159 SVDYGKKSKLEFAIYPAPQVSTAVVEP--YNS 188
+ + +++ L++ + + + +VE YN
Sbjct: 1818 AASFSQEA-LQYVVERVGKRTGWLVEIVNYNV 1848
Score = 35.8 bits (82), Expect = 0.084
Identities = 42/245 (17%), Positives = 63/245 (25%), Gaps = 100/245 (40%)
Query: 15 IGNACWELY------------CLEHGIQPDGQM-----PSDKTIGGGDDSFNTFFSETGA 57
IG C+E Y LE+ M + + + + N+
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA--- 362
Query: 58 GKHV-------PRAVFV------DLE-----------PTVVDEVRT--------GTYRQL 85
GK V + V L P+ +D+ R + R L
Sbjct: 363 GKQVEISLVNGAKN-LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 86 -----FH------PEQLITGKEDAARQIGEYSGH------Y-TI-GKEIVDLVLDRIRKL 126
FH LI +D + ++ Y T G ++ L ++
Sbjct: 422 PVASPFHSHLLVPASDLI--NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 127 ADQCT-------GLQGFLIFH--SFGGGTGSGFTSLLME-------RL----------SV 160
D F H FG G SG L R+
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Query: 161 DYGKK 165
DYG K
Sbjct: 540 DYGFK 544
Score = 31.2 bits (70), Expect = 1.8
Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 40/164 (24%)
Query: 649 LSVDYGKKSKLEFAIY-PAPQVSTAVV--EPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 705
L++ +G LE + P A E +N IL T F D+E
Sbjct: 9 LTLSHGS---LEHVLLVPTASFFIASQLQEQFNKILPEPTE------GFAADDEPTTPA- 58
Query: 706 RRNLDIERPTYTNLNRLIGQIVSSI--TASLRFDGALNVDLTEFQTNLVPYPRIH----- 758
L + + +G + S + + +FD LN+ LTEF+ + IH
Sbjct: 59 --EL---------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 759 FPLVTYAPVISAE---KAYHEQLSVA------EITNACFEPANQ 793
++ + K Y +A + +A F +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 2e-08
Identities = 90/683 (13%), Positives = 184/683 (26%), Gaps = 223/683 (32%)
Query: 74 VDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGH----YTIGKEIVDLVLDRIRKLADQ 129
V+EV Y+ L + T + + Y Y + + R++
Sbjct: 83 VEEVLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 130 CTGLQ-----GFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVE 184
L ++ G GSG T + ++ Y + K++F I+
Sbjct: 141 RQALLELRPAKNVLID---GVLGSGKTWVALDVCL-SYKVQCKMDFKIF----------- 185
Query: 185 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 244
+ ++ +N + L +L+ QI + T+
Sbjct: 186 -WLNL--------------------------KNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 245 FDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMV 304
+ + + Q L R K Y L V + N V
Sbjct: 219 HSSNIKLRIHSIQAEL----RRLL----------KSKPYENCLLV--LLN---------V 253
Query: 305 KCDPRHGKYMA--CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF---------- 352
+ + C +L + + T +D
Sbjct: 254 -QNAKAWNAFNLSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 353 -KVGINYQ--PPTVVPGGDLAKVQRAVCM----LSNTTAIAEAWARLDHKFDLMYAKRAF 405
+ Q P V+ + + + + A + W ++ L +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRR-----LSIIAESIRDGLATWDNWKHVNCD-KLTTIIESS 362
Query: 406 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTK-LTV- 463
+ +E E+ + + L+ + +PT L++
Sbjct: 363 L-----NVLEPAEYRKMFDRLSVFPPS---------------AH-------IPTILLSLI 395
Query: 464 -GEGMEEGEFSEARE--DLAALEKDYEEVGMDSRECISIHVGQAGVQIGNAC-----WEL 515
+ ++ + + +EK +E ISI + + + L
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKE------STISIP----SIYLELKVKLENEYAL 445
Query: 516 Y--CLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 573
+ ++H P D D F + G H L+ E R
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-----GHH--------LKNIEHPE-RMT 491
Query: 574 TYRQLFHPEQLITGK--EDAANNYARGHYTIGKEIVDLVLDRIRK----LADQCTGLQGF 627
+R +F + + K D+ A G I++ + ++ + D
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASG------SILNTLQQ-LKFYKPYICDNDP----- 539
Query: 628 LIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTL 687
ERL L+F P++ N I + +T L
Sbjct: 540 -----------------KYERLVNAI-----LDF----LPKIEE------NLICSKYTDL 567
Query: 688 EHSDCAFMVDNEAIYDICRRNLD 710
A M ++EAI++ + +
Sbjct: 568 LRI--ALMAEDEAIFEEAHKQVQ 588
Score = 36.8 bits (84), Expect = 0.035
Identities = 43/353 (12%), Positives = 97/353 (27%), Gaps = 119/353 (33%)
Query: 557 AVFVD--LEPT---VVDEVRTGTYRQLFHPEQLITGKEDAANN----YARGHYTIGKEIV 607
FV+ L ++ ++T RQ ++ + D N +A+ + + + +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 608 DL--VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYP 665
L L +R ++ G GSG T + ++ Y + K++F I+
Sbjct: 139 KLRQALLELRP--------AKNVLID---GVLGSGKTWVALDVCL-SYKVQCKMDFKIF- 185
Query: 666 APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 725
+ ++ +N + L +L+ Q
Sbjct: 186 -----------WLNL--------------------------KNCNSPETVLEMLQKLLYQ 208
Query: 726 IVSSITASLRFDGALNVDLTEFQTNLV------PYPR---I-----------HFP----- 760
I + T+ + + + Q L PY + F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 761 LVT--YAPVISAEKAYHEQLSVAEITNACFEPAN------------------QMVKCDPR 800
L+T + V A + + P +++ +P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP- 327
Query: 801 HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 853
++ + + + T + + D T + +N P
Sbjct: 328 ----RRLSII--AESIRDGLA----TWDNWKHVNC-DKLTTIIESSLNVLEPA 369
Score = 30.6 bits (68), Expect = 3.2
Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 55/176 (31%)
Query: 68 DLEPTVVDEVRTGTYRQL--FHPEQLITGKEDAARQIGEYSGHYTIGKEIVD-------L 118
L ++VD Y F + LI D + + GH+ E + +
Sbjct: 444 ALHRSIVDH-----YNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 119 VLD------RIRK--LADQCTG-----LQGFLIFHSFGGGTGSGFT--SLLMERLSVDYG 163
LD +IR A +G LQ + + ERL
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-------ICDNDPKYERLVNAI- 548
Query: 164 KKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 219
L+F P++ N I + +T L A M ++EAI++ + +
Sbjct: 549 ----LDFL----PKIEE------NLICSKYTDLLRI--ALMAEDEAIFEEAHKQVQ 588
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 50.8 bits (121), Expect = 1e-06
Identities = 22/174 (12%), Positives = 45/174 (25%), Gaps = 21/174 (12%)
Query: 582 EQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGF 641
I E + + ++ +I + C + + GG GSG
Sbjct: 51 TYHIPYAEGCGKERKKA-VGYAQTYYKQIIAQIMEKFSSC---DIVIFVATMAGGAGSGI 106
Query: 642 TSLLMERLSVDYGKKSKLEFAIYPA----PQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 697
T ++ Y K + P + +N + T +++D
Sbjct: 107 TPPILGLAKQMYPNKHFGFVGVLPKATEDIDEHMNAIACWND-IMRSTNEGKDISIYLLD 165
Query: 698 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 751
N +++N+ + + VD E L
Sbjct: 166 NNKRE------------KESDINKEFATLFNDFMNMSESHAEGVVDEDEISKLL 207
Score = 50.1 bits (119), Expect = 2e-06
Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 20/154 (12%)
Query: 111 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF 170
+ ++ +I + C + + GG GSG T ++ Y K
Sbjct: 70 YAQTYYKQIIAQIMEKFSSC---DIVIFVATMAGGAGSGITPPILGLAKQMYPNKHFGFV 126
Query: 171 AIYPA----PQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 226
+ P + +N + T +++DN +
Sbjct: 127 GVLPKATEDIDEHMNAIACWND-IMRSTNEGKDISIYLLDNNKRE------------KES 173
Query: 227 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 260
++N+ + + VD E L
Sbjct: 174 DINKEFATLFNDFMNMSESHAEGVVDEDEISKLL 207
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 38.0 bits (87), Expect = 0.013
Identities = 22/187 (11%), Positives = 49/187 (26%), Gaps = 22/187 (11%)
Query: 587 GKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQG---FLIFHSFGGGTGSGFTS 643
+ + +D + + + G FLI GGG G+G+ S
Sbjct: 108 TPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLICLGAGGGVGTGWGS 167
Query: 644 LLMERLSVDYGKKSKLEFAIYPAPQV-----------STAVVEPYNSILTTHTTLEHSDC 692
L+++ + + P+ L ++ ++
Sbjct: 168 LVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFMREQDRLFGNSDIKPLAN 227
Query: 693 AFMVDNEAIYDICRRN------LDIERPTYTNLNRLIGQIVSSITASLRFDGA--LNVDL 744
+ DN + I + N + + I G+ + D
Sbjct: 228 VIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEINIIPENYGSDNVTYDP 287
Query: 745 TEFQTNL 751
++ L
Sbjct: 288 SDLIKLL 294
Score = 37.2 bits (85), Expect = 0.024
Identities = 23/200 (11%), Positives = 54/200 (27%), Gaps = 22/200 (11%)
Query: 83 RQLFHPEQLITGKE-DAARQIGEYSGHYTIGKEIVDLVLDRIRKLAD--QCTGLQGFLIF 139
++ + + + + + L + RK + + FLI
Sbjct: 95 DRIHFDGLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLIC 154
Query: 140 HSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-----------STAVVEPYNS 188
GGG G+G+ SL+++ + + P+
Sbjct: 155 LGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFMREQD 214
Query: 189 ILTTHTTLEHSDCAFMVDNEAIYDICRRN------LDIERPTYTNLNRLIGQIVSSITAS 242
L ++ ++ + DN + I + N + + I
Sbjct: 215 RLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEINII 274
Query: 243 LRFDGA--LNVDLTEFQTNL 260
G+ + D ++ L
Sbjct: 275 PENYGSDNVTYDPSDLIKLL 294
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 36.6 bits (84), Expect = 0.030
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 13/157 (8%)
Query: 111 IGKEIVDLVLDRIRK-LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLE 169
+G+E +I + + + I GGGTG+G +E L +
Sbjct: 89 VGEEAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTGALLKAIEMLY----EHDYNF 144
Query: 170 FAI--YPAPQVSTAVVEP-YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE--RPT 224
+ P + V+E + I + E ++DN +Y
Sbjct: 145 GLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANEY 204
Query: 225 YTNLNRLIGQIVSSI---TASLRFDGALNVDLTEFQT 258
+ N+ I + I T+S + D +EF
Sbjct: 205 TSYSNKYIADALHEINLVTSSFTPFSDTHFDASEFAQ 241
Score = 36.6 bits (84), Expect = 0.030
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 13/157 (8%)
Query: 602 IGKEIVDLVLDRIRK-LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLE 660
+G+E +I + + + I GGGTG+G +E L +
Sbjct: 89 VGEEAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTGALLKAIEMLY----EHDYNF 144
Query: 661 FAI--YPAPQVSTAVVEP-YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE--RPT 715
+ P + V+E + I + E ++DN +Y
Sbjct: 145 GLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANEY 204
Query: 716 YTNLNRLIGQIVSSI---TASLRFDGALNVDLTEFQT 749
+ N+ I + I T+S + D +EF
Sbjct: 205 TSYSNKYIADALHEINLVTSSFTPFSDTHFDASEFAQ 241
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 32.5 bits (75), Expect = 0.57
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 31/102 (30%)
Query: 284 HEQLSVAEITNACFEPANQM-VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 342
E+LSV I Q+ + C KY LY ++ + +I K K T
Sbjct: 323 TEELSVEGIK--------QLYMDCQSEEHKYNVLVELY--GLL--TIGQSIIFCKKKDT- 369
Query: 343 QFVDW-----CPTGFKV-GINYQPPTVVPGGDLAKVQRAVCM 378
+ G V + G+L QR M
Sbjct: 370 --AEEIARRMTADGHTVACLT---------GNLEGAQRDAIM 400
Score = 29.1 bits (66), Expect = 7.4
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 16/65 (24%)
Query: 775 HEQLSVAEITNACFEPANQM-VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 833
E+LSV I Q+ + C KY LY ++ + +I K K T
Sbjct: 323 TEELSVEGIK--------QLYMDCQSEEHKYNVLVELY--GLL--TIGQSIIFCKKKDT- 369
Query: 834 QFVDW 838
+
Sbjct: 370 --AEE 372
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 32.2 bits (72), Expect = 0.79
Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 18/160 (11%)
Query: 97 DAARQIGEYSGHYTIGKE---IVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSL 153
+ + G G I+ LV +I L D +++ +S GGG+GS L
Sbjct: 42 HRSVNVTLTKGTRGAGGNRKVILPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPL 101
Query: 154 LMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 213
+ +L+ + ++ ++ V N
Sbjct: 102 ITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPNT----- 156
Query: 214 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDL 253
+ +Y ++N +I I + + L
Sbjct: 157 -------QGRSYESIND---EIAEKIRKVVLLVNQNHGRL 186
Score = 31.8 bits (71), Expect = 1.0
Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 15/141 (10%)
Query: 604 KEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAI 663
K I+ LV +I L D +++ +S GGG+GS L+ +L+
Sbjct: 61 KVILPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGA 120
Query: 664 YPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI 723
+ ++ ++ V N + +Y ++N
Sbjct: 121 MESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPNT------------QGRSYESIND-- 166
Query: 724 GQIVSSITASLRFDGALNVDL 744
+I I + + L
Sbjct: 167 -EIAEKIRKVVLLVNQNHGRL 186
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 30.4 bits (68), Expect = 1.2
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 416 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTKL--------TVGEGM 467
E + EA+ ++ YEEV V E + R E K TV +
Sbjct: 58 EIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117
Query: 468 EEGEFSEAREDLAALEKDYEE 488
+ E E+L + E
Sbjct: 118 KSLEDKV--EELLSKNYHLEN 136
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 1.4
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 29/95 (30%)
Query: 384 AIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEG 443
+I + W + + + ME+ +A++DL + E +
Sbjct: 86 SIRK-WRE---EQRKRLQELD----AASKVMEQEWREKAKKDLEEWNQRQSE------QV 131
Query: 444 EGEETNTRARHETLPTKLTVGEGMEEGEFSEARED 478
E + N R + F + +
Sbjct: 132 EKNKINNRI---------------ADKAFYQQPDA 151
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.4
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 14/42 (33%)
Query: 302 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 343
Q +K K A LY D P A+A IK T++
Sbjct: 20 QALK------KLQASLKLYADDSAP-----ALA-IKA--TME 47
Score = 30.3 bits (67), Expect = 1.4
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 14/42 (33%)
Query: 793 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 834
Q +K K A LY D P A+A IK T++
Sbjct: 20 QALK------KLQASLKLYADDSAP-----ALA-IKA--TME 47
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 28.4 bits (64), Expect = 2.7
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 383 TAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 439
+ + L + D A E E +E R + +Y+E+ +D
Sbjct: 17 AKLRDLEDSLARERDTSRRLLAEK---------EREMAEMRARMQQQLDEYQEL-LD 63
>3hfw_A Protein ADP-ribosylarginine hydrolase; all alpha-helical,
magnesium; HET: ADP; 1.92A {Homo sapiens}
Length = 357
Score = 29.3 bits (65), Expect = 5.8
Identities = 6/50 (12%), Positives = 10/50 (20%)
Query: 382 TTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 431
A AEA L Y + + + +
Sbjct: 60 HLATAEALVEAGKAPKLTQLYYLLAKHYQDCMEDMDGRAPGGASVHNAMQ 109
>2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus
zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A
Length = 387
Score = 28.8 bits (63), Expect = 8.0
Identities = 27/150 (18%), Positives = 43/150 (28%), Gaps = 15/150 (10%)
Query: 535 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANN 594
GG + ++ G R + + P + R + G AA +
Sbjct: 30 GGVRGDIEQWLNDNGY-----RTYTLAVGPLSSNWDRACEAYAQLVGGTVDYGAAHAAKH 84
Query: 595 YARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYG 654
GH G+ L+ + R HS GG T SLL +
Sbjct: 85 ---GHARFGRTYPGLLPELKRGGRIHIIA-------HSQGGQTARMLVSLLENGSQEERE 134
Query: 655 KKSKLEFAIYPAPQVSTAVVEPYNSILTTH 684
++ P + V +I T H
Sbjct: 135 YAKAHNVSLSPLFEGGHHFVLSVTTIATPH 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,634,849
Number of extensions: 870572
Number of successful extensions: 1993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1940
Number of HSP's successfully gapped: 51
Length of query: 864
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 762
Effective length of database: 3,853,851
Effective search space: 2936634462
Effective search space used: 2936634462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)