RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15389
(864 letters)
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 387 bits (994), Expect = e-130
Identities = 239/244 (97%), Positives = 243/244 (99%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
IRKLADQCTGLQGF +FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 241
Query: 734 LRFD 737
LRFD
Sbjct: 242 LRFD 245
Score = 373 bits (960), Expect = e-125
Identities = 234/246 (95%), Positives = 238/246 (96%), Gaps = 2/246 (0%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA GHYTIGKEI+DLVL
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYA--RGHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 180
DRIRKLADQCTGLQGF +FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239
Query: 241 ASLRFD 246
ASLRFD
Sbjct: 240 ASLRFD 245
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 380 bits (978), Expect = e-127
Identities = 108/243 (44%), Positives = 154/243 (63%), Gaps = 2/243 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQ--LERINVYYNEAAGNKY 59
Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
+RK ++ C LQGF + HS GGGTGSG +LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
VEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 180 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239
Query: 734 LRF 736
LRF
Sbjct: 240 LRF 242
Score = 368 bits (945), Expect = e-122
Identities = 105/245 (42%), Positives = 149/245 (60%), Gaps = 4/245 (1%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
RE + I GQ G QIG WE+ EHGI P G D + + N +++E K+
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQ--LERINVYYNEAAGNKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A GHYT G E+VD VL
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWA--KGHYTEGAELVDSVL 117
Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 180
D +RK ++ C LQGF + HS GGGTGSG +LL+ ++ +Y + F++ P+P+VS
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSD 177
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T
Sbjct: 178 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237
Query: 241 ASLRF 245
LRF
Sbjct: 238 TCLRF 242
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 358 bits (920), Expect = e-119
Identities = 100/244 (40%), Positives = 146/244 (59%), Gaps = 2/244 (0%)
Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQP-DGQMPSDKTIGGGDDSFNTFFSETGAGK 552
I + +GQAG QI + W+ CLEHGI P GQ G SF + E+ +G
Sbjct: 2 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 61
Query: 553 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 612
+VPRA+ VDLEP+V+D V+ LF+P LI+ E A N+A G+ G+E++ V+
Sbjct: 62 YVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMS 120
Query: 613 RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTA 672
R+ D+C + G ++ H+ GGGTGSGF +LL+E L YG+ L A+ P+PQVS+
Sbjct: 121 RLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSV 180
Query: 673 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 732
V EPYN++ +T +D + DNEA++D+ R +IE PT +LN LI + ++ ITA
Sbjct: 181 VTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITA 240
Query: 733 SLRF 736
S+RF
Sbjct: 241 SMRF 244
Score = 346 bits (889), Expect = e-114
Identities = 97/246 (39%), Positives = 142/246 (57%), Gaps = 4/246 (1%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQP-DGQMPSDKTIGGGDDSFNTFFSETGAGK 59
I + +GQAG QI + W+ CLEHGI P GQ G SF + E+ +G
Sbjct: 2 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 61
Query: 60 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLV 119
+VPRA+ VDLEP+V+D V+ LF+P LI+ E A + G+E++ V
Sbjct: 62 YVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVG--YLGAGREVLPEV 118
Query: 120 LDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVS 179
+ R+ D+C + G ++ H+ GGGTGSGF +LL+E L YG+ L A+ P+PQVS
Sbjct: 119 MSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVS 178
Query: 180 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 239
+ V EPYN++ +T +D + DNEA++D+ R +IE PT +LN LI + ++ I
Sbjct: 179 SVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGI 238
Query: 240 TASLRF 245
TAS+RF
Sbjct: 239 TASMRF 244
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 333 bits (855), Expect = e-110
Identities = 189/195 (96%), Positives = 193/195 (98%)
Query: 247 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 306
GALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 307 DPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 366
DPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+PPTVVPG
Sbjct: 61 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120
Query: 367 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 426
GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct: 121 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 180
Query: 427 AALEKDYEEVGMDSV 441
AALEKDYEEVG+DSV
Sbjct: 181 AALEKDYEEVGVDSV 195
Score = 207 bits (528), Expect = 1e-62
Identities = 121/127 (95%), Positives = 124/127 (97%)
Query: 738 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 797
GALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 798 DPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 857
DPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+PPTVVPG
Sbjct: 61 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120
Query: 858 GDLAKMS 864
GDLAK+
Sbjct: 121 GDLAKVQ 127
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 282 bits (723), Expect = 9e-91
Identities = 65/190 (34%), Positives = 108/190 (56%), Gaps = 8/190 (4%)
Query: 247 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 306
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N M C
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 307 DPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 366
DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 61 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP----- 115
Query: 367 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 426
++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 116 ---RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 172
Query: 427 AALEKDYEEV 436
L +Y++
Sbjct: 173 NDLVSEYQQY 182
Score = 177 bits (451), Expect = 5e-52
Identities = 41/119 (34%), Positives = 66/119 (55%)
Query: 738 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 797
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N M C
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 798 DPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 856
DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP +
Sbjct: 61 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLK 119
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 256 bits (655), Expect = 6e-81
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 250 NVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 309
+ L E TNLVP P +HF + +AP+ +++ E+L + E+ + F+ + C P
Sbjct: 1 EISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPM 60
Query: 310 HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 369
G++++ +LYRG + K + A A + + W PT FK+G QP
Sbjct: 61 EGRFLSTAVLYRGIMEDKPLADA-ALAAMREKLPLTYWIPTAFKIGYVEQPGI------- 112
Query: 370 AKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 429
++++ +L+N T IA R+ H FD ++ ++AF +WY+ EGM E + + R L
Sbjct: 113 -SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQEL 171
Query: 430 EKDYEEV 436
+ Y+
Sbjct: 172 VQSYQVA 178
Score = 152 bits (385), Expect = 5e-43
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 741 NVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 800
+ L E TNLVP P +HF + +AP+ +++ E+L + E+ + F+ + C P
Sbjct: 1 EISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPM 60
Query: 801 HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 856
G++++ +LYRG + K + A A + + W PT FK+G QP
Sbjct: 61 EGRFLSTAVLYRGIMEDKPLADA-ALAAMREKLPLTYWIPTAFKIGYVEQPGISHR 115
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 35.3 bits (81), Expect = 0.015
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 123 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 182
K+ + I FGGGTG+G S ++ +++ + G + AI P
Sbjct: 75 EEKIREVLQDTHMVFITAGFGGGTGTGA-SPVIAKIAKEMGILT---VAIVTTPFYFEGP 130
Query: 183 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
+I +H D + N + + R++ I+ + + + Q V I+
Sbjct: 131 ERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGIS 187
Score = 35.3 bits (81), Expect = 0.015
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
K+ + I FGGGTG+G S ++ +++ + G + AI P
Sbjct: 75 EEKIREVLQDTHMVFITAGFGGGTGTGA-SPVIAKIAKEMGILT---VAIVTTPFYFEGP 130
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 731
+I +H D + N + + R++ I+ + + + Q V I+
Sbjct: 131 ERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGIS 187
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 35.2 bits (81), Expect = 0.018
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 123 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 182
++++ G I GGGTG+G ++ E + L A+ P
Sbjct: 76 RERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAK----EMGILTVAVVTRPFPFEGR 131
Query: 183 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
+ E D + NE + I ++ + + + ++ V I+
Sbjct: 132 KRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGIS 188
Score = 35.2 bits (81), Expect = 0.018
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
++++ G I GGGTG+G ++ E + L A+ P
Sbjct: 76 RERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAK----EMGILTVAVVTRPFPFEGR 131
Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 731
+ E D + NE + I ++ + + + ++ V I+
Sbjct: 132 KRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGIS 188
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 33.0 bits (75), Expect = 0.11
Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 9/151 (5%)
Query: 581 PEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSG 640
++++ GK+ A G+ IG+E + I+ I GGGTG+G
Sbjct: 60 DKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIK---AAIQDSDMVFITCGLGGGTGTG 116
Query: 641 FTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEA 700
+ ++ +S G L A+ P V V N++ +H+D ++ NE
Sbjct: 117 S-APVVAEISKKIG---ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEK 172
Query: 701 IYDICRRNLDIERPTYTNLNRLIGQIVSSIT 731
+++I N+ ++ + + ++ V +
Sbjct: 173 LFEI-VPNMPLKL-AFKVADEVLINAVKGLV 201
Score = 31.1 bits (70), Expect = 0.42
Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 9/135 (6%)
Query: 106 SGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKK 165
G+ IG+E + I+ I GGGTG+G + ++ +S G
Sbjct: 76 GGNPKIGEEAAKESAEEIK---AAIQDSDMVFITCGLGGGTGTGS-APVVAEISKKIG-- 129
Query: 166 SKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY 225
L A+ P V V N++ +H+D ++ NE +++I N+ ++ +
Sbjct: 130 -ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEI-VPNMPLKL-AF 186
Query: 226 TNLNRLIGQIVSSIT 240
+ ++ V +
Sbjct: 187 KVADEVLINAVKGLV 201
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 29.5 bits (65), Expect = 1.0
Identities = 11/84 (13%), Positives = 24/84 (28%)
Query: 292 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 351
I + + + + +A ++ + ++D +G
Sbjct: 58 IFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 117
Query: 352 FKVGINYQPPTVVPGGDLAKVQRA 375
G TV+ GG V+R
Sbjct: 118 GTSGAEAGTLTVMLGGPEEAVERV 141
Score = 27.6 bits (60), Expect = 4.2
Identities = 9/77 (11%), Positives = 21/77 (27%)
Query: 783 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 842
I + + + + +A ++ + ++D +G
Sbjct: 58 IFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 117
Query: 843 FKVGINYQPPTVVPGGD 859
G TV+ GG
Sbjct: 118 GTSGAEAGTLTVMLGGP 134
>gi|115385463|ref|XP_001209278.1|(7-278:285) hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624]
gi|114187725|gb|EAU29425.1| hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624] E=1e-100
s/c=1.35 id=66% cov=100%
Length = 272
Score = 29.6 bits (66), Expect = 1.3
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 597 RGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER 648
G +T + D V+ +++ + ++ HS G + + L +
Sbjct: 110 LGFWTSWTNVRDSVMKHLKETMAANPDYELVVVGHSLGAAVATLAAADLRTK 161
Score = 29.2 bits (65), Expect = 1.9
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 106 SGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER 157
G +T + D V+ +++ + ++ HS G + + L +
Sbjct: 110 LGFWTSWTNVRDSVMKHLKETMAANPDYELVVVGHSLGAAVATLAAADLRTK 161
>d1v30a_ d.269.1.1 (A:) Hypothetical protein PH0828 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 118
Score = 27.2 bits (60), Expect = 4.2
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 12/71 (16%)
Query: 461 LTVGEGMEEGE-FSEAREDLAALEKDYEEVGMDSRECISIHVGQA----------GVQIG 509
G+G + E + +E + + E +S G+A G +I
Sbjct: 44 AVKGKGKLKVEVYEVDKETFERIN-EIEIGTGYRLVEVSTKFGKAFLWEWGSKPRGKRIK 102
Query: 510 NACWELYCLEH 520
+ ++ LEH
Sbjct: 103 SGDFDEIRLEH 113
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 26.8 bits (59), Expect = 9.5
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 126 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 185
+ + G + GGGTG+G ++ K L + P
Sbjct: 79 IEELLRGADMVFVTAGEGGGTGTGGAPVVASIAR----KLGALTVGVVTRPFSFEGKRRS 134
Query: 186 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
+ E D ++ N+ + + + + + + + ++ V IT
Sbjct: 135 NQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGIT 188
Score = 26.8 bits (59), Expect = 9.5
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 617 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 676
+ + G + GGGTG+G ++ K L + P
Sbjct: 79 IEELLRGADMVFVTAGEGGGTGTGGAPVVASIAR----KLGALTVGVVTRPFSFEGKRRS 134
Query: 677 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 731
+ E D ++ N+ + + + + + + + ++ V IT
Sbjct: 135 NQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGIT 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,278,270
Number of extensions: 156928
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 28
Length of query: 864
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 771
Effective length of database: 1,130,706
Effective search space: 871774326
Effective search space used: 871774326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)