BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1539
(175 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|21068659|emb|CAD21558.1| HEL protein [Chironomus tentans]
Length = 421
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/142 (67%), Positives = 107/142 (75%), Gaps = 9/142 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F ++ QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE TD+ YVLVMCHTRE
Sbjct: 59 FEHPSAVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTDNQAYVLVMCHTRE 118
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LAFQISKEYERFSKYMS +KV VFFGG+PIQKDEE LKT P IV G V+
Sbjct: 119 LAFQISKEYERFSKYMSGVKVAVFFGGMPIQKDEEVLKTTTPHIV------VGTPGRVLA 172
Query: 154 VMDVRSGGWWL-DLEALILSKC 174
+ +RS L +L+ IL +C
Sbjct: 173 L--IRSKKLNLKNLKHFILDEC 192
>gi|332019236|gb|EGI59746.1| ATP-dependent RNA helicase WM6 [Acromyrmex echinatior]
Length = 428
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 93/105 (88%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KVGVFFGGLPIQKDEE LKT P IV
Sbjct: 122 LAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEMLKTVCPHIV 166
>gi|122937741|gb|ABM68586.1| AAEL001216-PA [Aedes aegypti]
Length = 419
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 92/105 (87%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ YVLVMCHTRE
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENVPYVLVMCHTRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM NIKV VFFGGLPIQKDEE LK+ NP I+
Sbjct: 121 LAFQISKEYERFSKYMPNIKVAVFFGGLPIQKDEEVLKSTNPHII 165
>gi|307178480|gb|EFN67169.1| Spliceosome RNA helicase Bat1 [Camponotus floridanus]
Length = 425
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 93/105 (88%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRE
Sbjct: 63 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRE 122
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KVGVFFGGLPIQKDEE LKT P IV
Sbjct: 123 LAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKTVCPHIV 167
>gi|157115837|ref|XP_001658306.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|94468806|gb|ABF18252.1| ATP-dependent RNA helicase [Aedes aegypti]
gi|108883476|gb|EAT47701.1| AAEL001216-PA [Aedes aegypti]
Length = 423
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 92/105 (87%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ YVLVMCHTRE
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENVPYVLVMCHTRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM NIKV VFFGGLPIQKDEE LK+ NP I+
Sbjct: 121 LAFQISKEYERFSKYMPNIKVAVFFGGLPIQKDEEVLKSTNPHII 165
>gi|156550340|ref|XP_001606535.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Nasonia
vitripennis]
Length = 425
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 93/105 (88%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE+T+++VYVLVMCHTRE
Sbjct: 63 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLESTENHVYVLVMCHTRE 122
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGLPIQKDEE LK P IV
Sbjct: 123 LAFQISKEYERFSKYMQNVKVSVFFGGLPIQKDEEVLKNTCPHIV 167
>gi|332376787|gb|AEE63533.1| unknown [Dendroctonus ponderosae]
Length = 424
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 93/105 (88%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENVVYVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +IKVGVFFGGLPIQKDEE LK + P IV
Sbjct: 122 LAFQISKEYERFSKYMPSIKVGVFFGGLPIQKDEEMLKNNCPHIV 166
>gi|170057076|ref|XP_001864320.1| ATP-dependent RNA helicase WM6 [Culex quinquefasciatus]
gi|167876642|gb|EDS40025.1| ATP-dependent RNA helicase WM6 [Culex quinquefasciatus]
Length = 423
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 92/105 (87%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T+S YVLVMCHTRE
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTESVPYVLVMCHTRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +IKV VFFGGLPIQKDEE LK+ NP I+
Sbjct: 121 LAFQISKEYERFSKYMPSIKVAVFFGGLPIQKDEEVLKSTNPHII 165
>gi|322789368|gb|EFZ14680.1| hypothetical protein SINV_13808 [Solenopsis invicta]
Length = 420
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 93/105 (88%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEWTENQVYVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KVGVFFGGLPIQKDEE LKT P IV
Sbjct: 122 LAFQISKEYERFSKYMQHVKVGVFFGGLPIQKDEEVLKTVCPHIV 166
>gi|383858684|ref|XP_003704829.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Megachile
rotundata]
Length = 454
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 92/105 (87%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KVGVFFGGLPIQKDEE LK P IV
Sbjct: 122 LAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNTCPHIV 166
>gi|66532824|ref|XP_624894.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Apis mellifera]
gi|380028013|ref|XP_003697706.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Apis florea]
Length = 424
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 92/105 (87%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KVGVFFGGLPIQKDEE LK P IV
Sbjct: 122 LAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNTCPHIV 166
>gi|340718595|ref|XP_003397750.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Bombus terrestris]
gi|350409690|ref|XP_003488817.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Bombus impatiens]
Length = 424
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 92/105 (87%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KVGVFFGGLPIQKDEE LK P IV
Sbjct: 122 LAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNVCPHIV 166
>gi|91083251|ref|XP_974045.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
[Tribolium castaneum]
gi|270007718|gb|EFA04166.1| hypothetical protein TcasGA2_TC014413 [Tribolium castaneum]
Length = 425
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 92/105 (87%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRE
Sbjct: 63 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENVVYVLVMCHTRE 122
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM NIKVGVFFGGL IQKDEE LK + P IV
Sbjct: 123 LAFQISKEYERFSKYMPNIKVGVFFGGLSIQKDEEVLKNNCPHIV 167
>gi|357631512|gb|EHJ78982.1| hypothetical protein KGM_15394 [Danaus plexippus]
Length = 425
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 84/105 (80%), Positives = 93/105 (88%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE +D++VYVLVMCHTRE
Sbjct: 63 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNHVYVLVMCHTRE 122
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM+ ++V VFFGG+PIQKDE+ LKT P IV
Sbjct: 123 LAFQISKEYERFSKYMAGVRVSVFFGGMPIQKDEDVLKTACPHIV 167
>gi|389609001|dbj|BAM18112.1| helicase [Papilio xuthus]
Length = 425
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/105 (80%), Positives = 93/105 (88%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE ++++VYVLVMCHTRE
Sbjct: 63 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHTRE 122
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM+ ++V VFFGG+PIQKDEE LKT P IV
Sbjct: 123 LAFQISKEYERFSKYMAGVRVSVFFGGMPIQKDEEVLKTACPHIV 167
>gi|158299806|ref|XP_319825.4| AGAP009075-PA [Anopheles gambiae str. PEST]
gi|157013695|gb|EAA14744.5| AGAP009075-PA [Anopheles gambiae str. PEST]
Length = 319
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 89/105 (84%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T++ YVLVMCHTRE
Sbjct: 49 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENVPYVLVMCHTRE 108
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERF KYM IKV VFFGGLPIQKDEE LKT P I+
Sbjct: 109 LAFQISKEYERFCKYMPTIKVAVFFGGLPIQKDEEVLKTTTPHII 153
>gi|312382514|gb|EFR27948.1| hypothetical protein AND_04792 [Anopheles darlingi]
Length = 481
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 84/105 (80%), Positives = 90/105 (85%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE T+S YVLVMCHTRE
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTESVPYVLVMCHTRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERF KYM +IKV VFFGG+PIQKDEE LK+ P I+
Sbjct: 121 LAFQISKEYERFCKYMPSIKVAVFFGGMPIQKDEEVLKSTTPHII 165
>gi|324505647|gb|ADY42424.1| Spliceosome RNA helicase BAT1 [Ascaris suum]
Length = 275
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDI+CQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY IK+GVFFGG+PI+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYYPGIKIGVFFGGMPIKKDEEVLKNNTPHIV 169
>gi|324510197|gb|ADY44267.1| Spliceosome RNA helicase BAT1 [Ascaris suum]
Length = 429
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDI+CQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY IK+GVFFGG+PI+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYYPGIKIGVFFGGMPIKKDEEVLKNNTPHIV 169
>gi|156550342|ref|XP_001606676.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Nasonia
vitripennis]
Length = 425
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/105 (79%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE ++ V VLVMCHTRE
Sbjct: 63 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELAENQVLVLVMCHTRE 122
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +KV VFFGGLPIQKDEE LK P IV
Sbjct: 123 LAFQISKEYERFSKYIPQVKVSVFFGGLPIQKDEEVLKNTCPHIV 167
>gi|195434048|ref|XP_002065015.1| GK14902 [Drosophila willistoni]
gi|194161100|gb|EDW76001.1| GK14902 [Drosophila willistoni]
Length = 424
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGGL IQKDEE LK+ P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKSGTPHIV 166
>gi|198476804|ref|XP_001357483.2| GA20225 [Drosophila pseudoobscura pseudoobscura]
gi|198137859|gb|EAL34553.2| GA20225 [Drosophila pseudoobscura pseudoobscura]
Length = 424
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPADNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGGL IQKDEE LK+ P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKSGTPHIV 166
>gi|195155470|ref|XP_002018627.1| GL25900 [Drosophila persimilis]
gi|194114780|gb|EDW36823.1| GL25900 [Drosophila persimilis]
Length = 403
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPADNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGGL IQKDEE LK+ P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKSGTPHIV 166
>gi|195118098|ref|XP_002003577.1| GI21901 [Drosophila mojavensis]
gi|195388486|ref|XP_002052911.1| GJ17817 [Drosophila virilis]
gi|193914152|gb|EDW13019.1| GI21901 [Drosophila mojavensis]
gi|194149368|gb|EDW65066.1| GJ17817 [Drosophila virilis]
Length = 424
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGGL IQKDEE LK P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKNGTPHIV 166
>gi|348511173|ref|XP_003443119.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Oreochromis
niloticus]
Length = 427
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM IK VFFGGLPI+KDE+ LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMPTIKAAVFFGGLPIKKDEDVLKKNCPHIV 168
>gi|387018188|gb|AFJ51212.1| ATP-dependent RNA helicase DDX39-like [Crotalus adamanteus]
Length = 427
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 89/105 (84%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPLDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM+N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMTNVKVSVFFGGLSIKKDEEVLKKNCPHIV 168
>gi|442626187|ref|NP_001260100.1| helicase at 25E, isoform D [Drosophila melanogaster]
gi|440213395|gb|AGB92636.1| helicase at 25E, isoform D [Drosophila melanogaster]
Length = 305
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGG+ IQKDEE LK+ P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIV 166
>gi|195034694|ref|XP_001988957.1| GH11448 [Drosophila grimshawi]
gi|193904957|gb|EDW03824.1| GH11448 [Drosophila grimshawi]
Length = 424
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPADNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGGL IQKDEE LK P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKNGTPHIV 166
>gi|24581952|ref|NP_723089.1| helicase at 25E, isoform A [Drosophila melanogaster]
gi|24581954|ref|NP_723090.1| helicase at 25E, isoform B [Drosophila melanogaster]
gi|24581956|ref|NP_723091.1| helicase at 25E, isoform C [Drosophila melanogaster]
gi|195342749|ref|XP_002037961.1| GM18014 [Drosophila sechellia]
gi|195550904|ref|XP_002076131.1| GD11981 [Drosophila simulans]
gi|2500532|sp|Q27268.1|UAP56_DROME RecName: Full=ATP-dependent RNA helicase WM6; Short=DEAD box
protein UAP56; Short=Dmrnahel; AltName: Full=HEL/UAP56
gi|158313|gb|AAB65835.1| DECD family putative RNA helicase [Drosophila melanogaster]
gi|505583|emb|CAA56197.1| WM6 [Drosophila melanogaster]
gi|7296990|gb|AAF52261.1| helicase at 25E, isoform A [Drosophila melanogaster]
gi|21430206|gb|AAM50781.1| LD23644p [Drosophila melanogaster]
gi|22945674|gb|AAN10544.1| helicase at 25E, isoform B [Drosophila melanogaster]
gi|22945675|gb|AAN10545.1| helicase at 25E, isoform C [Drosophila melanogaster]
gi|194132811|gb|EDW54379.1| GM18014 [Drosophila sechellia]
gi|194201780|gb|EDX15356.1| GD11981 [Drosophila simulans]
gi|220946752|gb|ACL85919.1| Hel25E-PA [synthetic construct]
gi|220956384|gb|ACL90735.1| Hel25E-PA [synthetic construct]
Length = 424
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGG+ IQKDEE LK+ P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIV 166
>gi|194856731|ref|XP_001968815.1| GG24297 [Drosophila erecta]
gi|195473856|ref|XP_002089208.1| Hel25E [Drosophila yakuba]
gi|190660682|gb|EDV57874.1| GG24297 [Drosophila erecta]
gi|194175309|gb|EDW88920.1| Hel25E [Drosophila yakuba]
Length = 424
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGG+ IQKDEE LK+ P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIV 166
>gi|237651933|gb|ACR08655.1| helicase at 25E, partial [Drosophila silvestris]
Length = 224
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPADNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGGL IQKDEE LK P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKNGTPHIV 166
>gi|348542184|ref|XP_003458566.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Oreochromis
niloticus]
Length = 435
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 69 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMCHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +KV VFFGGLPI+KDEE LK +P IV
Sbjct: 129 LAFQISKEYERFSKYMPTVKVAVFFGGLPIKKDEEVLKKDSPHIV 173
>gi|327265107|ref|XP_003217350.1| PREDICTED: ATP-dependent RNA helicase DDX39-like [Anolis
carolinensis]
Length = 427
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 89/105 (84%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E TD V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPTDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYMS +KV VFFGGL I+KDE+ LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMSAVKVSVFFGGLSIKKDEDVLKKNCPHIV 168
>gi|38047587|gb|AAR09696.1| similar to Drosophila melanogaster Hel25E, partial [Drosophila
yakuba]
Length = 260
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTR
Sbjct: 11 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTR 70
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGG+ IQKDEE LK+ P IV
Sbjct: 71 ELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIV 116
>gi|403307907|ref|XP_003944424.1| PREDICTED: LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B
[Saimiri boliviensis boliviensis]
Length = 577
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|74142931|dbj|BAE42496.1| unnamed protein product [Mus musculus]
Length = 324
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|393906277|gb|EJD74236.1| spliceosome RNA helicase BAT1 [Loa loa]
Length = 426
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDI+CQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +++ VFFGG+PI+KDEE LK + P IV
Sbjct: 122 LAFQISKEYERFSKYIPGVRIAVFFGGIPIKKDEETLKNNTPHIV 166
>gi|312097317|ref|XP_003148938.1| hypothetical protein LOAG_13381 [Loa loa]
Length = 286
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDI+CQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +++ VFFGG+PI+KDEE LK + P IV
Sbjct: 122 LAFQISKEYERFSKYIPGVRIAVFFGGIPIKKDEETLKNNTPHIV 166
>gi|119623817|gb|EAX03412.1| hCG2005638, isoform CRA_d [Homo sapiens]
Length = 290
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|402593902|gb|EJW87829.1| spliceosome RNA helicase BAT1 [Wuchereria bancrofti]
Length = 424
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDI+CQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +++ VFFGG+PI+KDEE LK + P IV
Sbjct: 122 LAFQISKEYERFSKYIPGVRIAVFFGGIPIKKDEETLKNNTPHIV 166
>gi|168985562|emb|CAQ10640.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 238
Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|62088014|dbj|BAD92454.1| HLA-B associated transcript 1 variant [Homo sapiens]
Length = 310
Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 85 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 144
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 145 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 189
>gi|168985561|emb|CAQ10639.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 236
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|156602043|gb|ABU86917.1| Bat1 [Ornithorhynchus anatinus]
Length = 451
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|168985560|emb|CAQ10638.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 231
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|19773876|gb|AAL98920.1| Bat1 [Rattus norvegicus]
Length = 428
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|205942|gb|AAA41787.1| liver nuclear protein p47 [Rattus norvegicus]
Length = 399
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|410307166|gb|JAA32183.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Pan troglodytes]
gi|410307168|gb|JAA32184.1| HLA-B associated transcript 1 [Pan troglodytes]
Length = 428
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|194759123|ref|XP_001961799.1| GF14747 [Drosophila ananassae]
gi|190615496|gb|EDV31020.1| GF14747 [Drosophila ananassae]
Length = 424
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGGL I KDEE LK+ P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGLAITKDEETLKSGTPHIV 166
>gi|9790069|ref|NP_062667.1| spliceosome RNA helicase Ddx39b [Mus musculus]
gi|51592092|ref|NP_579834.2| spliceosome RNA helicase Ddx39b [Rattus norvegicus]
gi|356995868|ref|NP_001239386.1| spliceosome RNA helicase Ddx39b [Mus musculus]
gi|61217662|sp|Q9Z1N5.1|DX39B_MOUSE RecName: Full=Spliceosome RNA helicase Ddx39b; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56; AltName: Full=HLA-B-associated transcript
1 protein
gi|61252099|sp|Q63413.3|DX39B_RAT RecName: Full=Spliceosome RNA helicase Ddx39b; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=ATP-dependent
RNA helicase p47; AltName: Full=DEAD box protein Uap56
gi|4809332|gb|AAD30177.1|AC007080_3 BAT1 [Mus musculus]
gi|4235116|gb|AAD13115.1| nuclear RNA helicase Bat1 [Mus musculus]
gi|15029704|gb|AAH11067.1| HLA-B-associated transcript 1A [Mus musculus]
gi|17529570|emb|CAC85694.1| putative RNA helicase [Rattus norvegicus]
gi|22137623|gb|AAH24859.1| HLA-B-associated transcript 1A [Mus musculus]
gi|26341686|dbj|BAC34505.1| unnamed protein product [Mus musculus]
gi|26353988|dbj|BAC40624.1| unnamed protein product [Mus musculus]
gi|32964852|gb|AAP91685.1| HLA-B associated transcript 1 [Mus musculus]
gi|32964854|gb|AAP91686.1| HLA-B associated transcript 1 [Mus musculus]
gi|51329823|gb|AAH80243.1| HLA-B associated transcript 1 [Rattus norvegicus]
gi|149028103|gb|EDL83554.1| HLA-B-associated transcript 1A, isoform CRA_a [Rattus norvegicus]
Length = 428
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|355671587|gb|AER94941.1| HLA-B associated transcript 1 [Mustela putorius furo]
Length = 244
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|354492854|ref|XP_003508559.1| PREDICTED: spliceosome RNA helicase Ddx39b-like [Cricetulus
griseus]
Length = 376
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|4758112|ref|NP_004631.1| spliceosome RNA helicase DDX39B [Homo sapiens]
gi|18375623|ref|NP_542165.1| spliceosome RNA helicase DDX39B [Homo sapiens]
gi|55742824|ref|NP_001005157.1| spliceosome RNA helicase DDX39B [Sus scrofa]
gi|114050801|ref|NP_001040608.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|166429536|ref|NP_001107635.1| spliceosome RNA helicase DDX39B [Pan troglodytes]
gi|194223324|ref|XP_001917652.1| PREDICTED: v-type proton ATPase subunit G 2 isoform 1 [Equus
caballus]
gi|338718573|ref|XP_003363850.1| PREDICTED: v-type proton ATPase subunit G 2 isoform 2 [Equus
caballus]
gi|395533821|ref|XP_003768951.1| PREDICTED: spliceosome RNA helicase DDX39B [Sarcophilus harrisii]
gi|397523218|ref|XP_003831638.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Pan paniscus]
gi|397523220|ref|XP_003831639.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Pan paniscus]
gi|402866418|ref|XP_003897379.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Papio anubis]
gi|402866420|ref|XP_003897380.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Papio anubis]
gi|402866422|ref|XP_003897381.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 3 [Papio anubis]
gi|426352363|ref|XP_004043682.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Gorilla
gorilla gorilla]
gi|426352365|ref|XP_004043683.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Gorilla
gorilla gorilla]
gi|2500529|sp|Q13838.1|DX39B_HUMAN RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=ATP-dependent
RNA helicase p47; AltName: Full=DEAD box protein UAP56;
AltName: Full=HLA-B-associated transcript 1 protein
gi|38502870|sp|P60024.1|DX39B_PANTR RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|47117788|sp|Q29024.2|DX39B_PIG RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|61217531|sp|Q5RE47.1|DX39B_PONAB RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|61217533|sp|Q5TM17.1|DX39B_MACMU RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|587146|emb|CAA85523.1| nuclear RNA helicase (DEAD family) [Homo sapiens]
gi|6624728|emb|CAB63856.1| putative RNA helicase [Sus scrofa]
gi|12653187|gb|AAH00361.1| HLA-B associated transcript 1 [Homo sapiens]
gi|15277213|dbj|BAB63306.1| putative ATP-dependent RNA helicase [Homo sapiens]
gi|15278164|gb|AAH13006.1| HLA-B associated transcript 1 [Homo sapiens]
gi|18181952|dbj|BAB83886.1| BAT1 [Pan troglodytes]
gi|27544432|dbj|BAC54953.1| HLA-B associated transcript 1 [Homo sapiens]
gi|32127769|dbj|BAC78161.1| ATP-dependent RNA helicase [Pan troglodytes]
gi|32880161|gb|AAP88911.1| HLA-B associated transcript 1 [Homo sapiens]
gi|55700773|dbj|BAD69728.1| HLA-B associated transcript-1 [Macaca mulatta]
gi|55726381|emb|CAH89960.1| hypothetical protein [Pongo abelii]
gi|61362641|gb|AAX42257.1| HLA-B associated transcript 1 [synthetic construct]
gi|61362649|gb|AAX42258.1| HLA-B associated transcript 1 [synthetic construct]
gi|86197992|dbj|BAE78637.1| HLA-B associated transcript 1 [Homo sapiens]
gi|90085292|dbj|BAE91387.1| unnamed protein product [Macaca fascicularis]
gi|90960864|dbj|BAE92779.1| nuclear RNA helicase [Pan troglodytes]
gi|90960868|dbj|BAE92782.1| nuclear RNA helicase [Pan troglodytes]
gi|119623809|gb|EAX03404.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623812|gb|EAX03407.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623813|gb|EAX03408.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623814|gb|EAX03409.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623815|gb|EAX03410.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623816|gb|EAX03411.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623818|gb|EAX03413.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|123981956|gb|ABM82807.1| HLA-B associated transcript 1 [synthetic construct]
gi|123996783|gb|ABM85993.1| HLA-B associated transcript 1 [synthetic construct]
gi|162138207|gb|ABX82809.1| HLA-B-associated protein 1 [Sus scrofa]
gi|168985556|emb|CAQ10634.1| HLA-B associated transcript 1 [Homo sapiens]
gi|261859894|dbj|BAI46469.1| HLA-B associated transcript 1 [synthetic construct]
gi|266634526|dbj|BAI49420.1| HLA-B associated transcript 1 [Microcebus murinus]
gi|380783493|gb|AFE63622.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|380783495|gb|AFE63623.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|383411769|gb|AFH29098.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|383411771|gb|AFH29099.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|384949414|gb|AFI38312.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|410214944|gb|JAA04691.1| HLA-B associated transcript 1 [Pan troglodytes]
gi|410214946|gb|JAA04692.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Pan troglodytes]
gi|410247506|gb|JAA11720.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Pan troglodytes]
gi|410247508|gb|JAA11721.1| HLA-B associated transcript 1 [Pan troglodytes]
gi|410340525|gb|JAA39209.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Pan troglodytes]
gi|410340527|gb|JAA39210.1| HLA-B associated transcript 1 [Pan troglodytes]
Length = 428
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|30585031|gb|AAP36788.1| Homo sapiens HLA-B associated transcript 1 [synthetic construct]
gi|60654019|gb|AAX29702.1| HLA-B associated transcript 1 [synthetic construct]
gi|60654021|gb|AAX29703.1| HLA-B associated transcript 1 [synthetic construct]
Length = 429
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|62897383|dbj|BAD96632.1| HLA-B associated transcript 1 variant [Homo sapiens]
Length = 428
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|444721087|gb|ELW61840.1| Spliceosome RNA helicase DDX39B [Tupaia chinensis]
Length = 428
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|170575130|ref|XP_001893112.1| Probable ATP-dependent RNA helicase p47 homolog [Brugia malayi]
gi|158601044|gb|EDP38054.1| Probable ATP-dependent RNA helicase p47 homolog, putative [Brugia
malayi]
Length = 710
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDI+CQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +++ VFFGG+PI+KDEE LK + P IV
Sbjct: 122 LAFQISKEYERFSKYIPGVRIAVFFGGIPIKKDEETLKNNTPHIV 166
>gi|410958716|ref|XP_003985960.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Felis catus]
Length = 435
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 72 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 132 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 176
>gi|281342596|gb|EFB18180.1| hypothetical protein PANDA_020423 [Ailuropoda melanoleuca]
Length = 425
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|301789323|ref|XP_002930057.1| PREDICTED: spliceosome RNA helicase BAT1-like [Ailuropoda
melanoleuca]
gi|410958714|ref|XP_003985959.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Felis catus]
Length = 428
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|355748421|gb|EHH52904.1| hypothetical protein EGM_13439 [Macaca fascicularis]
Length = 426
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|431921583|gb|ELK18937.1| Spliceosome RNA helicase BAT1 [Pteropus alecto]
Length = 426
Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|390461400|ref|XP_002746375.2| PREDICTED: LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B
[Callithrix jacchus]
Length = 422
Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|355561520|gb|EHH18152.1| hypothetical protein EGK_14701 [Macaca mulatta]
Length = 426
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|149446031|ref|XP_001516247.1| PREDICTED: spliceosome RNA helicase DDX39B-like, partial
[Ornithorhynchus anatinus]
Length = 289
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|62177121|ref|NP_001014399.1| spliceosome RNA helicase DDX39B [Canis lupus familiaris]
gi|61217540|sp|Q5WR10.1|DX39B_CANFA RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|39540669|gb|AAR27886.1| BAT1 [Canis lupus familiaris]
Length = 428
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|344307250|ref|XP_003422295.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Loxodonta
africana]
Length = 440
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|397523222|ref|XP_003831640.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 3 [Pan paniscus]
Length = 443
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 80 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 139
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 140 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 184
>gi|509403|emb|CAA84355.1| BAT1 [Sus scrofa]
Length = 427
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 168
>gi|348576520|ref|XP_003474035.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Cavia porcellus]
Length = 428
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|168985559|emb|CAQ10637.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 289
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|126323154|ref|XP_001366378.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Monodelphis
domestica]
Length = 427
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPNVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|115688648|ref|XP_001178866.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Strongylocentrotus
purpuratus]
Length = 429
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 89/105 (84%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQL+ D V VLVMCHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLDPVDGQVSVLVMCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI+KEYERFSKYM +KVGVFFGGL I+KDE+ +KT+ P IV
Sbjct: 127 LAFQIAKEYERFSKYMPTVKVGVFFGGLSIKKDEQTIKTNCPHIV 171
>gi|334323693|ref|XP_001368591.2| PREDICTED: spliceosome RNA helicase DDX39B [Monodelphis domestica]
Length = 466
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|432089424|gb|ELK23366.1| Spliceosome RNA helicase DDX39B [Myotis davidii]
Length = 469
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/101 (80%), Positives = 87/101 (86%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
+S QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQ
Sbjct: 112 SSVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQ 171
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 172 ISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 212
>gi|52695645|pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
gi|52695646|pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 34 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 138
>gi|60594465|pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 27 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 87 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 131
>gi|391346453|ref|XP_003747488.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Metaseiulus
occidentalis]
Length = 424
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 62 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +++GVFFGGL IQ DE+ LK+ P IV
Sbjct: 122 LAFQISKEYERFSKYMPGVRIGVFFGGLSIQNDEKTLKSACPHIV 166
>gi|67970471|dbj|BAE01578.1| unnamed protein product [Macaca fascicularis]
Length = 424
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 61 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 121 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 165
>gi|61679617|pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 28 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 132
>gi|60594464|pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 28 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 132
>gi|321453633|gb|EFX64849.1| hypothetical protein DAPPUDRAFT_219465 [Daphnia pulex]
Length = 425
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 90/105 (85%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMD+LCQAKSGMGKTAVFVLATLQQLE ++ V VLV+CHTRE
Sbjct: 63 FEHPSEVQHECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEMVENQVSVLVLCHTRE 122
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM+ IKVGVFFGGL I KDE+ LK++ P IV
Sbjct: 123 LAFQISKEYERFSKYMTTIKVGVFFGGLNIAKDEQTLKSNCPHIV 167
>gi|410917332|ref|XP_003972140.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Takifugu
rubripes]
Length = 427
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +KV VFFGGL I+KDEE LK + P I+
Sbjct: 124 LAFQISKEYERFSKYMPTVKVSVFFGGLTIKKDEEVLKKNCPHII 168
>gi|168985557|emb|CAQ10635.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 425
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|348520870|ref|XP_003447950.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Oreochromis
niloticus]
Length = 427
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +KV VFFGG+ I+KDEE LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKVSVFFGGMAIKKDEEVLKKNCPHIV 168
>gi|344239195|gb|EGV95298.1| Spliceosome RNA helicase BAT1 [Cricetulus griseus]
Length = 288
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|313221766|emb|CBY38854.1| unnamed protein product [Oikopleura dioica]
gi|313233364|emb|CBY24478.1| unnamed protein product [Oikopleura dioica]
Length = 422
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 90/105 (85%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q+ECIPQAVLGMD+LCQAKSGMGKTAVFVLATLQQLE D NV V+VMCHTRE
Sbjct: 60 FEHPSQVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEPVDGNVSVIVMCHTRE 119
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGG+PI+KD++ LK + P IV
Sbjct: 120 LAFQISKEYERFSKYMDSMKVAVFFGGMPIEKDKKVLKENCPHIV 164
>gi|410917396|ref|XP_003972172.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like, partial
[Takifugu rubripes]
Length = 433
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +KV VFFGGL I+KDEE LK + P I+
Sbjct: 124 LAFQISKEYERFSKYMPTVKVSVFFGGLAIRKDEEVLKKNCPHII 168
>gi|41055604|ref|NP_957237.1| HLA-B associated transcript 1 [Danio rerio]
gi|32766427|gb|AAH55240.1| HLA-B associated transcript 1 [Danio rerio]
gi|126632630|emb|CAM56334.1| HLA-B associated transcript 1 [Danio rerio]
Length = 435
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 72 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK +P +V
Sbjct: 132 LAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESPHVV 176
>gi|283854611|gb|ADB44901.1| DEAD(Asp-Glu-Ala-Asp) box polypeptide 39 [Macrobrachium nipponense]
Length = 432
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 89/105 (84%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ++ D V VLVMCHTRE
Sbjct: 70 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQIDPVDGQVSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI+KEYERF+KYM N+KVGVFFGG+ + KDEE LK++ P IV
Sbjct: 130 LAYQIAKEYERFTKYMPNVKVGVFFGGMNVSKDEETLKSNCPHIV 174
>gi|156390799|ref|XP_001635457.1| predicted protein [Nematostella vectensis]
gi|156222551|gb|EDO43394.1| predicted protein [Nematostella vectensis]
Length = 429
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDI+CQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI KEYERF KYMSNIK+ VFFGG+ I+KD++ LKT+ P IV
Sbjct: 127 LAFQIHKEYERFCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIV 171
>gi|225708116|gb|ACO09904.1| ATP-dependent RNA helicase DDX39 [Osmerus mordax]
Length = 427
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +K VFFGG+ I+KDEE LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKAAVFFGGMAIKKDEEVLKKNCPHIV 168
>gi|198430623|ref|XP_002127634.1| PREDICTED: similar to HLA-B associated transcript 1 [Ciona
intestinalis]
Length = 424
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q+ECIPQAVLGMD+LCQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 62 FEHPSEVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM IKV VFFGGLPI KD+ LK + P IV
Sbjct: 122 LAFQISKEYERFSKYMPTIKVAVFFGGLPITKDQTTLKNNCPHIV 166
>gi|156545225|ref|XP_001606735.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Nasonia
vitripennis]
Length = 428
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDILCQAKSGMGKTA+FVLATLQQLE ++ V LVMCHTRE
Sbjct: 66 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAIFVLATLQQLELAENKVLGLVMCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +KV VFFGG+PIQKD+E LK + P IV
Sbjct: 126 LAFQISKEYERFSKYLPKVKVSVFFGGMPIQKDKEVLKNNCPHIV 170
>gi|75832045|ref|NP_001028801.1| spliceosome RNA helicase DDX39B [Bos taurus]
gi|426250582|ref|XP_004019014.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Ovis aries]
gi|426250584|ref|XP_004019015.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Ovis aries]
gi|122140442|sp|Q3T147.1|DX39B_BOVIN RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|74353855|gb|AAI02132.1| HLA-B associated transcript 1 [Bos taurus]
gi|296474278|tpg|DAA16393.1| TPA: spliceosome RNA helicase BAT1 [Bos taurus]
Length = 428
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|354507651|ref|XP_003515868.1| PREDICTED: spliceosome RNA helicase Ddx39b-like, partial
[Cricetulus griseus]
Length = 205
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKT VFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTVVFVLATLQQLEPITGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|148228466|ref|NP_001087845.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Xenopus laevis]
gi|51950262|gb|AAH82368.1| MGC81606 protein [Xenopus laevis]
Length = 428
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK P IV
Sbjct: 125 LAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEVLKKSCPHIV 169
>gi|45360797|ref|NP_989072.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Xenopus (Silurana)
tropicalis]
gi|38174030|gb|AAH61280.1| HLA-B associated transcript 1 [Xenopus (Silurana) tropicalis]
Length = 428
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK P IV
Sbjct: 125 LAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEVLKKSCPHIV 169
>gi|20302732|gb|AAM18861.1|AF391287_2 unknown [Branchiostoma floridae]
Length = 427
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 85/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+L MD+LCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVAVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM IK VFFGG+PIQKD LKT+ P IV
Sbjct: 124 LAFQISKEYERFSKYMPTIKNAVFFGGMPIQKDRNTLKTNCPHIV 168
>gi|395512966|ref|XP_003760703.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Sarcophilus harrisii]
Length = 427
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|351711520|gb|EHB14439.1| ATP-dependent RNA helicase DDX39 [Heterocephalus glaber]
Length = 419
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 56 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRE 115
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDE+ LK + P +V
Sbjct: 116 LAFQISKEYERFSKYMPNVKVSVFFGGLSIKKDEDVLKRNCPHVV 160
>gi|355703230|gb|EHH29721.1| ATP-dependent RNA helicase DDX39 [Macaca mulatta]
Length = 477
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 114 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 173
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 174 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 218
>gi|327266482|ref|XP_003218034.1| PREDICTED: spliceosome RNA helicase BAT1-like [Anolis carolinensis]
Length = 428
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|213511506|ref|NP_001134851.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
gi|209736554|gb|ACI69146.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
Length = 427
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +K VFFGGL I+KDE+ LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIV 168
>gi|213514236|ref|NP_001133080.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
gi|197631861|gb|ACH70654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Salmo salar]
Length = 427
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +K VFFGGL I+KDE+ LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIV 168
>gi|47085711|ref|NP_998142.1| ATP-dependent RNA helicase DDX39 [Danio rerio]
gi|28278325|gb|AAH44169.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
gi|45709039|gb|AAH67555.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
gi|118763876|gb|AAI28805.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
gi|169154009|emb|CAQ13699.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
gi|182889946|gb|AAI65847.1| Ddx39b protein [Danio rerio]
Length = 427
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +KV VFFGG+ I+KDE+ LK P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKVAVFFGGMSIKKDEDVLKKSCPHIV 168
>gi|221221068|gb|ACM09195.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
gi|223647064|gb|ACN10290.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
gi|223672933|gb|ACN12648.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
Length = 427
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +K VFFGGL I+KDE+ LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIV 168
>gi|77736449|ref|NP_001029924.1| ATP-dependent RNA helicase DDX39A [Bos taurus]
gi|59858465|gb|AAX09067.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 1 [Bos taurus]
gi|296485978|tpg|DAA28093.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Bos taurus]
Length = 427
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCPHVV 168
>gi|225707666|gb|ACO09679.1| ATP-dependent RNA helicase DDX39 [Osmerus mordax]
Length = 427
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 85/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +K VFFGG+ I+KDEE LK P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKAAVFFGGMAIKKDEEVLKKSCPHIV 168
>gi|426228876|ref|XP_004008522.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Ovis aries]
Length = 427
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCPHVV 168
>gi|224587698|gb|ACN58701.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
Length = 422
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 59 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 118
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +K VFFGGL I+KDE+ LK + P IV
Sbjct: 119 LAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIV 163
>gi|221131178|ref|XP_002164853.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Hydra
magnipapillata]
Length = 433
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDI+CQAKSGMGKTAVFVLATLQQLE DS V VLVM HTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDSQVSVLVMSHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQ+SKEYERFSKY+ N KV VFFGGL ++KDE+ LKT+ P IV
Sbjct: 127 LAFQVSKEYERFSKYLPNTKVAVFFGGLSVKKDEQTLKTNCPHIV 171
>gi|395832555|ref|XP_003789329.1| PREDICTED: spliceosome RNA helicase Ddx39b [Otolemur garnettii]
Length = 423
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 85/98 (86%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISK
Sbjct: 67 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 126
Query: 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
EYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 127 EYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 164
>gi|119604821|gb|EAW84415.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_b [Homo
sapiens]
gi|119604822|gb|EAW84416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_b [Homo
sapiens]
Length = 316
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|301771296|ref|XP_002921018.1| PREDICTED: ATP-dependent RNA helicase DDX39-like [Ailuropoda
melanoleuca]
Length = 427
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|213514512|ref|NP_001133398.1| Spliceosome RNA helicase BAT1 [Salmo salar]
gi|209153419|gb|ACI33160.1| Spliceosome RNA helicase BAT1 [Salmo salar]
Length = 428
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 85/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM IKV VFFGGL I+KDEE LK P +V
Sbjct: 125 LAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVV 169
>gi|61217546|sp|Q5ZHZ0.1|DX39B_CHICK RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|53136648|emb|CAG32653.1| hypothetical protein RCJMB04_32b9 [Gallus gallus]
gi|255661416|gb|ACU25864.1| HLA-B associated protein 1 [Meleagris gallopavo]
Length = 428
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL ++KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIV 169
>gi|344259201|gb|EGW15305.1| Spliceosome RNA helicase Bat1 [Cricetulus griseus]
Length = 229
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKT VFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTVVFVLATLQQLEPITGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|402904532|ref|XP_003915097.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Papio anubis]
Length = 555
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 192 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 251
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 252 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 296
>gi|73986746|ref|XP_533895.2| PREDICTED: ATP-dependent RNA helicase DDX39A [Canis lupus
familiaris]
gi|395850755|ref|XP_003797941.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Otolemur garnettii]
gi|410950598|ref|XP_003981991.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Felis catus]
Length = 427
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|403302191|ref|XP_003941746.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 1 [Saimiri
boliviensis boliviensis]
Length = 427
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|281353060|gb|EFB28644.1| hypothetical protein PANDA_009904 [Ailuropoda melanoleuca]
Length = 422
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|335282778|ref|XP_003123418.2| PREDICTED: ATP-dependent RNA helicase DDX39A-like isoform 1 [Sus
scrofa]
gi|335282780|ref|XP_003354153.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like isoform 2 [Sus
scrofa]
Length = 427
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|290462501|gb|ADD24298.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
gi|290562772|gb|ADD38781.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
Length = 426
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDIL QAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAVLGMDILSQAKSGMGKTAVFVLATLQQMEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ IKVGVFFGGL I KDE+ LK++ P IV
Sbjct: 124 LAFQISKEYERFSKYLPGIKVGVFFGGLAISKDEQVLKSNCPHIV 168
>gi|348552098|ref|XP_003461865.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Cavia porcellus]
Length = 427
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCPHVV 168
>gi|426387517|ref|XP_004060213.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 2 [Gorilla
gorilla gorilla]
Length = 295
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|21040371|ref|NP_005795.2| ATP-dependent RNA helicase DDX39A [Homo sapiens]
gi|301601639|ref|NP_001180420.1| ATP-dependent RNA helicase DDX39A [Macaca mulatta]
gi|297703837|ref|XP_002828833.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 1 [Pongo
abelii]
gi|397471066|ref|XP_003807128.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Pan paniscus]
gi|426387515|ref|XP_004060212.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 1 [Gorilla
gorilla gorilla]
gi|426387519|ref|XP_004060214.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 3 [Gorilla
gorilla gorilla]
gi|61212932|sp|O00148.2|DX39A_HUMAN RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
box protein 39; AltName: Full=Nuclear RNA helicase URH49
gi|12654373|gb|AAH01009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo sapiens]
gi|119604824|gb|EAW84418.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_d [Homo
sapiens]
gi|123980968|gb|ABM82313.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [synthetic construct]
gi|123995775|gb|ABM85489.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [synthetic construct]
gi|383415013|gb|AFH30720.1| ATP-dependent RNA helicase DDX39A [Macaca mulatta]
gi|384944666|gb|AFI35938.1| ATP-dependent RNA helicase DDX39A [Macaca mulatta]
gi|410210478|gb|JAA02458.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Pan troglodytes]
gi|410253028|gb|JAA14481.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Pan troglodytes]
gi|410290144|gb|JAA23672.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Pan troglodytes]
Length = 427
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|10439505|dbj|BAB15509.1| unnamed protein product [Homo sapiens]
Length = 461
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 98 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 157
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 158 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 202
>gi|47940414|gb|AAH71505.1| Ddx39a protein [Danio rerio]
Length = 427
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYMS++K FFGG+ I+KDE+ LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMSSVKCAAFFGGMSIKKDEDVLKKNCPHIV 168
>gi|380799051|gb|AFE71401.1| ATP-dependent RNA helicase DDX39A, partial [Macaca mulatta]
Length = 375
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 12 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 71
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 72 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 116
>gi|431898055|gb|ELK06762.1| ATP-dependent RNA helicase DDX39 [Pteropus alecto]
Length = 484
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 121 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 180
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 181 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 225
>gi|395828827|ref|XP_003787565.1| PREDICTED: spliceosome RNA helicase DDX39B-like isoform 1 [Otolemur
garnettii]
Length = 428
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQ++LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHT+E
Sbjct: 65 FEHPSEVQHECIPQSILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTQE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>gi|194377854|dbj|BAG63290.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 107 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 166
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 167 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 211
>gi|171702402|dbj|BAG16272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 transcript variant [Homo
sapiens]
Length = 267
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|355683284|gb|AER97074.1| DEAD box polypeptide 39 [Mustela putorius furo]
Length = 427
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVSGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEILKKNCPHVV 168
>gi|432094533|gb|ELK26087.1| ATP-dependent RNA helicase DDX39A [Myotis davidii]
Length = 435
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|21619414|gb|AAH32128.1| DDX39 protein [Homo sapiens]
gi|119604823|gb|EAW84417.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_c [Homo
sapiens]
Length = 322
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|403302193|ref|XP_003941747.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 2 [Saimiri
boliviensis boliviensis]
Length = 315
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|355755539|gb|EHH59286.1| ATP-dependent RNA helicase DDX39, partial [Macaca fascicularis]
Length = 465
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 107 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 166
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 167 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 211
>gi|344283235|ref|XP_003413378.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Loxodonta
africana]
Length = 427
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTA FVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAGFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPNVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>gi|148678968|gb|EDL10915.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_a [Mus
musculus]
Length = 225
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 81 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRE 140
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 141 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 185
>gi|74216552|dbj|BAE37719.1| unnamed protein product [Mus musculus]
Length = 427
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|74205930|dbj|BAE23239.1| unnamed protein product [Mus musculus]
Length = 427
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|38372907|ref|NP_932099.2| ATP-dependent RNA helicase DDX39A [Mus musculus]
gi|61213001|sp|Q8VDW0.1|DX39A_MOUSE RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
box protein 39
gi|18044894|gb|AAH20134.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Mus musculus]
gi|74181505|dbj|BAE30021.1| unnamed protein product [Mus musculus]
gi|74184027|dbj|BAE37049.1| unnamed protein product [Mus musculus]
gi|74207612|dbj|BAE40052.1| unnamed protein product [Mus musculus]
gi|74219249|dbj|BAE26758.1| unnamed protein product [Mus musculus]
gi|74226811|dbj|BAE27051.1| unnamed protein product [Mus musculus]
gi|148678969|gb|EDL10916.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_b [Mus
musculus]
Length = 427
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|74204289|dbj|BAE39902.1| unnamed protein product [Mus musculus]
Length = 427
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|74214685|dbj|BAE31182.1| unnamed protein product [Mus musculus]
Length = 427
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|354479467|ref|XP_003501931.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Cricetulus griseus]
Length = 427
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|344244550|gb|EGW00654.1| ATP-dependent RNA helicase DDX39 [Cricetulus griseus]
Length = 424
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|55926219|ref|NP_446015.2| ATP-dependent RNA helicase DDX39A [Rattus norvegicus]
gi|61212312|sp|Q5U216.1|DX39A_RAT RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
box protein 39; AltName: Full=Nuclear RNA helicase, DECD
variant of DEAD box family
gi|55562871|gb|AAH86328.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Rattus norvegicus]
gi|149037897|gb|EDL92257.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_a [Rattus
norvegicus]
Length = 427
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|225710812|gb|ACO11252.1| ATP-dependent RNA helicase DDX39 [Caligus rogercresseyi]
Length = 426
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDIL QAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAVLGMDILSQAKSGMGKTAVFVLATLQQMEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ KVGVFFGGL I KDE+ LK++ P IV
Sbjct: 124 LAFQISKEYERFSKYLPGAKVGVFFGGLAISKDEQVLKSNCPHIV 168
>gi|225710008|gb|ACO10850.1| ATP-dependent RNA helicase DDX39 [Caligus rogercresseyi]
Length = 426
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDIL QAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAVLGMDILSQAKSGMGKTAVFVLATLQQMEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ KVGVFFGGL I KDE+ LK++ P IV
Sbjct: 124 LAFQISKEYERFSKYLPGAKVGVFFGGLAISKDEQVLKSNCPHIV 168
>gi|168985568|emb|CAQ10646.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 187
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 84/100 (84%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 88 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 147
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH 133
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK +
Sbjct: 148 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 187
>gi|74192407|dbj|BAE43010.1| unnamed protein product [Mus musculus]
Length = 427
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/105 (72%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLAT+QQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATMQQIEPVNGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|193652521|ref|XP_001942765.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Acyrthosiphon
pisum]
Length = 423
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVL+TLQQLE +S VY LV+CHTRE
Sbjct: 61 FEHPSEVQHECIPQAMLGMDILCQAKSGMGKTAVFVLSTLQQLEVYESEVYALVLCHTRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKE+ERF+KY+ +KV VFFGG+PI KDE+ LK + P +V
Sbjct: 121 LAFQISKEFERFTKYLPAVKVSVFFGGVPITKDEDTLKNNKPHVV 165
>gi|432880279|ref|XP_004073639.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Oryzias latipes]
Length = 427
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 85/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +K VFFGG+ I+ DE+ LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKAAVFFGGMAIKNDEDVLKKNCPHIV 168
>gi|148231835|ref|NP_001079623.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Xenopus laevis]
gi|28278799|gb|AAH45239.1| MGC53693 protein [Xenopus laevis]
gi|31580806|gb|AAP51031.1| DECD-box RNA helicase [Xenopus laevis]
gi|76779487|gb|AAI06295.1| MGC53693 protein [Xenopus laevis]
Length = 427
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEAVEGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +KV VFFGGL I+KDE+ ++ P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEDTIRKSCPHIV 168
>gi|291237406|ref|XP_002738626.1| PREDICTED: HLA-B associated transcript 1-like [Saccoglossus
kowalevskii]
Length = 429
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+L MD+LCQAKSGMGKTAVFVLATLQQ+E D V VLV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI+KEYERFSKYM IKVGVFFGG+ I+KDE+ LK + P IV
Sbjct: 127 LAFQIAKEYERFSKYMPTIKVGVFFGGINIKKDEQTLKNNCPHIV 171
>gi|195999078|ref|XP_002109407.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190587531|gb|EDV27573.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 425
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 89/105 (84%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F ++ QHECIPQA+LGMD++CQAKSGMGKTAVFVLATLQQL+ D+ V VLV+CHTRE
Sbjct: 63 FEHPSAVQHECIPQAILGMDVICQAKSGMGKTAVFVLATLQQLDPVDNEVSVLVLCHTRE 122
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEY+RFSKYM N+KV VFFGG+ I+KD+ LK+ P IV
Sbjct: 123 LAFQISKEYDRFSKYMDNVKVAVFFGGINIKKDQATLKSSCPHIV 167
>gi|1905998|gb|AAB50231.1| nuclear RNA helicase [Homo sapiens]
Length = 427
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 87/101 (86%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
+ QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQ
Sbjct: 68 SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQ 127
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ISKEYERFSKYM ++KV VFFGGL I+KDEE +K + P +V
Sbjct: 128 ISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVMKKNCPHVV 168
>gi|432843030|ref|XP_004065549.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Oryzias latipes]
Length = 427
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGG+ I+ +E+ LK + P IV
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGMAIKNNEDTLKKNCPHIV 168
>gi|442753421|gb|JAA68870.1| Putative atp-dependent rna helicase [Ixodes ricinus]
Length = 418
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/105 (72%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQL+ D V VLVMCHTRE
Sbjct: 59 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVDGQVSVLVMCHTRE 118
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +++VGVFFGG+ I DE+ LK+ P +V
Sbjct: 119 LAFQISKEYERFSKYLPSVRVGVFFGGMNISNDEKLLKSSCPHVV 163
>gi|62858405|ref|NP_001016000.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Xenopus (Silurana)
tropicalis]
gi|89271292|emb|CAJ82673.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Xenopus (Silurana)
tropicalis]
gi|89271293|emb|CAJ82681.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Xenopus (Silurana)
tropicalis]
gi|89271296|emb|CAJ82702.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Xenopus (Silurana)
tropicalis]
gi|187469409|gb|AAI67122.1| hypothetical protein LOC548754 [Xenopus (Silurana) tropicalis]
gi|213624204|gb|AAI70784.1| hypothetical protein LOC548754 [Xenopus (Silurana) tropicalis]
gi|213627133|gb|AAI70782.1| hypothetical protein LOC548754 [Xenopus (Silurana) tropicalis]
Length = 427
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 85/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQTEAVEGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM +KV VFFGGL I+KDE+ ++ P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEDTIRKSCPHIV 168
>gi|405952464|gb|EKC20273.1| Spliceosome RNA helicase BAT1 [Crassostrea gigas]
Length = 486
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+L MD+LCQAKSGMGKTAVFVLATLQQLE D V VLV+ HTRE
Sbjct: 64 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM+N+K+ VFFGG+ I+KDE+ LK + P I+
Sbjct: 124 LAFQISKEYERFSKYMNNVKIAVFFGGMSIKKDEDVLKKNCPHII 168
>gi|3132829|gb|AAC16391.1| nuclear RNA helicase [Rattus norvegicus]
Length = 427
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/105 (72%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQIS EYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISTEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>gi|114306812|dbj|BAF31287.1| BAT1 protein [Homo sapiens]
Length = 443
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 88/120 (73%), Gaps = 15/120 (12%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY--------- 84
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE VY
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVYLGRVLGRGF 124
Query: 85 ------VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 WLGLVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 184
>gi|147905268|ref|NP_001080733.1| nuclear RNA helicase [Xenopus laevis]
gi|28280049|gb|AAH45125.1| Ddx39-prov protein [Xenopus laevis]
Length = 427
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/105 (72%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEAVEGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++V VFFGGL I+KDE+ ++ P IV
Sbjct: 124 LAFQISKEYERFSKYMPTVEVAVFFGGLSIKKDEDTIRKSCPHIV 168
>gi|443689578|gb|ELT91951.1| hypothetical protein CAPTEDRAFT_165082, partial [Capitella teleta]
Length = 433
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVLATLQQ+E ++ V VLV+CHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVLATLQQIEPVENQVSVLVLCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYMS IK+ VFFGG+ I+KDE LK + P I+
Sbjct: 125 LAFQISKEYERFSKYMSGIKIAVFFGGMNIKKDETVLKNNCPNII 169
>gi|427789657|gb|JAA60280.1| Putative spliceosome rna helicase ddx39b [Rhipicephalus pulchellus]
Length = 421
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQL+ + V VLVMCHTRE
Sbjct: 59 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVEGQVSVLVMCHTRE 118
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +++VGVFFGG+ I DE+ LK+ P +V
Sbjct: 119 LAFQISKEYERFSKYLPSVRVGVFFGGMNITNDEKVLKSSCPHVV 163
>gi|351713130|gb|EHB16049.1| Spliceosome RNA helicase Bat1 [Heterocephalus glaber]
Length = 436
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 87/116 (75%), Gaps = 11/116 (9%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV---------- 83
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVCLRRVGRVFW 124
Query: 84 -YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 180
>gi|346468339|gb|AEO34014.1| hypothetical protein [Amblyomma maculatum]
Length = 421
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQL+ + V VLVMCHTRE
Sbjct: 59 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVEGQVSVLVMCHTRE 118
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +++VGVFFGG+ I DE+ L++ P +V
Sbjct: 119 LAFQISKEYERFSKYLPSVRVGVFFGGMNITNDEKVLRSSCPHVV 163
>gi|268530282|ref|XP_002630267.1| C. briggsae CBR-HEL-1 protein [Caenorhabditis briggsae]
Length = 424
Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 98/142 (69%), Gaps = 9/142 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ TLQQLE D V V+ MCHTRE
Sbjct: 60 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRE 119
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LAFQISKEYERFSKY+ +KV VFFGG+ I+KDEE L P IV G ++
Sbjct: 120 LAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIV------VGTPGRMLA 173
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+ RSG LD ++ IL +C
Sbjct: 174 L--ARSGKLKLDKVKYFILDEC 193
>gi|71982858|ref|NP_001021985.1| Protein HEL-1, isoform a [Caenorhabditis elegans]
gi|2500533|sp|Q18212.1|DX39B_CAEEL RecName: Full=Spliceosome RNA helicase DDX39B homolog; AltName:
Full=DEAD box protein UAP56
gi|3874509|emb|CAA91120.1| Protein HEL-1, isoform a [Caenorhabditis elegans]
Length = 425
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 9/142 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ TLQQLE D V V+ MCHTRE
Sbjct: 61 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LAFQISKEYERFSKY+ +KV VFFGG+ I+KDEE L P IV G ++
Sbjct: 121 LAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIV------VGTPGRMLA 174
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+ RSG LD ++ +L +C
Sbjct: 175 L--ARSGKLKLDKVKYFVLDEC 194
>gi|440898761|gb|ELR50186.1| Spliceosome RNA helicase BAT1 [Bos grunniens mutus]
Length = 439
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 88/119 (73%), Gaps = 14/119 (11%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY--------- 84
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V+
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVHLQRVLGKAS 124
Query: 85 -----VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
VLVMCHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 WLVVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIV 183
>gi|476338|gb|AAB65852.1| putative RNA helicase, partial [Caenorhabditis elegans]
Length = 417
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 9/142 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ TLQQLE D V V+ MCHTRE
Sbjct: 60 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRE 119
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LAFQISKEYERFSKY+ +KV VFFGG+ I+KDEE L P IV G ++
Sbjct: 120 LAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIV------VGTPGRMLA 173
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+ RSG LD ++ +L +C
Sbjct: 174 L--ARSGKLKLDKVKYFVLDEC 193
>gi|341896383|gb|EGT52318.1| CBN-HEL-1 protein [Caenorhabditis brenneri]
Length = 424
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 9/142 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ TLQQLE D V V+ MCHTRE
Sbjct: 60 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRE 119
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LAFQISKEYERFSKY+ +KV VFFGG+ I+KDEE L P IV G ++
Sbjct: 120 LAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIV------VGTPGRMLA 173
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+ RSG LD ++ +L +C
Sbjct: 174 L--ARSGKLKLDKVKYFVLDEC 193
>gi|308510234|ref|XP_003117300.1| CRE-HEL-1 protein [Caenorhabditis remanei]
gi|308242214|gb|EFO86166.1| CRE-HEL-1 protein [Caenorhabditis remanei]
Length = 424
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 9/142 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ TLQQLE D V V+ MCHTRE
Sbjct: 60 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRE 119
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LAFQISKEYERFSKY+ +KV VFFGG+ I+KDEE L P IV G ++
Sbjct: 120 LAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIV------VGTPGRMLA 173
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+ RSG LD ++ +L +C
Sbjct: 174 L--ARSGKLKLDKVKYFVLDEC 193
>gi|71982862|ref|NP_001021986.1| Protein HEL-1, isoform b [Caenorhabditis elegans]
gi|25809203|emb|CAD57690.1| Protein HEL-1, isoform b [Caenorhabditis elegans]
Length = 268
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 9/142 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ TLQQLE D V V+ MCHTRE
Sbjct: 61 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LAFQISKEYERFSKY+ +KV VFFGG+ I+KDEE L P IV G ++
Sbjct: 121 LAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIV------VGTPGRMLA 174
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+ RSG LD ++ +L +C
Sbjct: 175 L--ARSGKLKLDKVKYFVLDEC 194
>gi|395837044|ref|XP_003791455.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Otolemur
garnettii]
Length = 444
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LG+D+LCQA+SGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 81 FEHPSEVQHECIPQAILGLDVLCQARSGMGKTAVFVLATLQQIEPINGQVTVLVMCHTRE 140
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYE FSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 141 LAFQISKEYEGFSKYMPSVKVSVFFGGLSIRKDEKVLKKNCPHVV 185
>gi|410929731|ref|XP_003978253.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Takifugu
rubripes]
Length = 425
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 86/105 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILC+A+SGMGKTAVFVLATLQQ++ D V VLVMCHTRE
Sbjct: 62 FEHPSKVQHECIPQAILGMDILCEAQSGMGKTAVFVLATLQQIKPVDGQVSVLVMCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAF+ISKEYERFSKYM +KV VFFGGL I+KD+ LK + P I+
Sbjct: 122 LAFKISKEYERFSKYMPTVKVSVFFGGLTIRKDKAVLKKNCPHII 166
>gi|339248287|ref|XP_003375777.1| DEAD-box helicase 1 [Trichinella spiralis]
gi|316970810|gb|EFV54682.1| DEAD-box helicase 1 [Trichinella spiralis]
Length = 714
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 84/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ATLQQL + V+ LVMCHTRE
Sbjct: 73 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVIATLQQLNAVEGEVHCLVMCHTRE 132
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERF KYM +KV VFFGG ++KDE+ L+ + P IV
Sbjct: 133 LAFQISKEYERFCKYMPKVKVAVFFGGTNVKKDEDMLRNNTPHIV 177
>gi|339259990|ref|XP_003368629.1| spliceosome RNA helicase BAT1 [Trichinella spiralis]
gi|316964502|gb|EFV49578.1| spliceosome RNA helicase BAT1 [Trichinella spiralis]
Length = 640
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 84/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ATLQQL + V+ LVMCHTRE
Sbjct: 73 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVIATLQQLNAVEGEVHCLVMCHTRE 132
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERF KYM +KV VFFGG ++KDE+ L+ + P IV
Sbjct: 133 LAFQISKEYERFCKYMPKVKVAVFFGGTNVKKDEDMLRNNTPHIV 177
>gi|146197860|dbj|BAF57641.1| WM6 protein [Dugesia japonica]
Length = 403
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS-NVYVLVMCHTR 92
F + QHECIPQA+L MD+LCQAKSGMGKTAVFVL+TLQQL+ TD VLV+CHTR
Sbjct: 40 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLSTLQQLDATDDGTCKVLVLCHTR 99
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYMSNI V VF+GG+PI+ D E LK PQ++
Sbjct: 100 ELAFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLI 145
>gi|325183657|emb|CCA18117.1| predicted protein putative [Albugo laibachii Nc14]
Length = 426
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 84/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDI+CQAKSGMGKTAVFVLATL Q+E D + V+V+CHTRE
Sbjct: 65 FEHPSEVQHECIPQAVLGMDIICQAKSGMGKTAVFVLATLHQIEPVDGQISVMVLCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI+ EYERFSKY+ N+K VF+GG+ I KD + LK++ P IV
Sbjct: 125 LAFQIAHEYERFSKYLHNVKTAVFYGGIAITKDRDTLKSNTPHIV 169
>gi|339521897|gb|AEJ84113.1| spliceosome RNA helicase Bat1 [Capra hircus]
Length = 428
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/105 (72%), Positives = 83/105 (79%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQ E V VLVMCHTRE
Sbjct: 65 FEPPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQHWEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERF KYM ++KV VFFG L I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFLKYMPSVKVAVFFGVLSIKKDEEVLKKNCPHIV 169
>gi|301117800|ref|XP_002906628.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262107977|gb|EEY66029.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 455
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 85/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDI+CQAKSGMGKTAVFVLATL Q+E D + V+VMCHTRE
Sbjct: 94 FEHPSEVQHECIPQAVLGMDIICQAKSGMGKTAVFVLATLHQIEPVDGQISVVVMCHTRE 153
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI+ EYERFSKY+ ++K GVF+GG+PI ++ E LK + P I+
Sbjct: 154 LAFQIAHEYERFSKYLVDVKTGVFYGGVPISQNREALKNNPPHIL 198
>gi|358332904|dbj|GAA43229.2| ATP-dependent RNA helicase UAP56/SUB2 [Clonorchis sinensis]
Length = 426
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/106 (71%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD-SNVYVLVMCHTR 92
F + QHECIPQA+L MD+LCQAKSGMGKTAVFV+ATLQQL+ + +N VLV+CHTR
Sbjct: 63 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEEEANTSVLVLCHTR 122
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM IKVGVFFGGLPI+KD E L IV
Sbjct: 123 ELAFQISKEYERFSKYMPKIKVGVFFGGLPIRKDIETLSKSPVHIV 168
>gi|56759172|gb|AAW27726.1| unknown [Schistosoma japonicum]
Length = 233
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTR 92
F + QHECIPQA+L MD+LCQAKSGMGKTAVFV+ATLQQL+ ++N VLV+CHTR
Sbjct: 63 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTR 122
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM IKVGVFFGG+PI+KD E L IV
Sbjct: 123 ELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETLTKSPVHIV 168
>gi|256070997|ref|XP_002571828.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353228609|emb|CCD74780.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 426
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 86/103 (83%), Gaps = 2/103 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTR 92
F + QHECIPQA+L MD+LCQAKSGMGKTAVFV+ATLQQL+ ++N VLV+CHTR
Sbjct: 63 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGEANTTVLVLCHTR 122
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP 135
ELAFQISKEYERFSKYM IKVGVFFGG+PI+KD E L T +P
Sbjct: 123 ELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETL-TKSP 164
>gi|189502902|gb|ACE06832.1| unknown [Schistosoma japonicum]
gi|226469666|emb|CAX76663.1| Helicase at 25E [Schistosoma japonicum]
gi|226469670|emb|CAX76665.1| Helicase at 25E [Schistosoma japonicum]
gi|226469672|emb|CAX76666.1| Helicase at 25E [Schistosoma japonicum]
gi|226469674|emb|CAX76667.1| Helicase at 25E [Schistosoma japonicum]
gi|226469676|emb|CAX76668.1| Helicase at 25E [Schistosoma japonicum]
gi|226469678|emb|CAX76669.1| Helicase at 25E [Schistosoma japonicum]
gi|226473012|emb|CAX71192.1| Helicase at 25E [Schistosoma japonicum]
gi|226473014|emb|CAX71193.1| Helicase at 25E [Schistosoma japonicum]
gi|226473016|emb|CAX71194.1| Helicase at 25E [Schistosoma japonicum]
gi|226473018|emb|CAX71195.1| Helicase at 25E [Schistosoma japonicum]
gi|226473020|emb|CAX71196.1| Helicase at 25E [Schistosoma japonicum]
Length = 426
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 86/103 (83%), Gaps = 2/103 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTR 92
F + QHECIPQA+L MD+LCQAKSGMGKTAVFV+ATLQQL+ ++N VLV+CHTR
Sbjct: 63 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTR 122
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP 135
ELAFQISKEYERFSKYM IKVGVFFGG+PI+KD E L T +P
Sbjct: 123 ELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETL-TKSP 164
>gi|168985563|emb|CAQ10641.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 197
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/133 (62%), Positives = 90/133 (67%), Gaps = 28/133 (21%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-------DSN---- 82
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE DS+
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVCFCDSHFPRG 124
Query: 83 -----------------VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQK 125
V VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+K
Sbjct: 125 DNEELHLPYVSVYFLPKVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 184
Query: 126 DEEYLKTHNPQIV 138
DEE LK + P IV
Sbjct: 185 DEEVLKKNCPHIV 197
>gi|226469668|emb|CAX76664.1| Helicase at 25E [Schistosoma japonicum]
Length = 231
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 86/103 (83%), Gaps = 2/103 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTR 92
F + QHECIPQA+L MD+LCQAKSGMGKTAVFV+ATLQQL+ ++N VLV+CHTR
Sbjct: 63 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTR 122
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP 135
ELAFQISKEYERFSKYM IKVGVFFGG+PI+KD E L T +P
Sbjct: 123 ELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETL-TKSP 164
>gi|56758736|gb|AAW27508.1| unknown [Schistosoma japonicum]
Length = 215
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTR 92
F + QHECIPQA+L MD+LCQAKSGMGKTAVFV+ATLQQL+ ++N VLV+CHTR
Sbjct: 63 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTR 122
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM IKVGVFFGG+PI+KD E L IV
Sbjct: 123 ELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETLTKSPVHIV 168
>gi|345313468|ref|XP_001515366.2| PREDICTED: ATP-dependent RNA helicase DDX39A [Ornithorhynchus
anatinus]
Length = 440
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 85/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG+D+LCQAKSGMGKTAVFVL+TLQQL+ D + L+MCHTRE
Sbjct: 64 FEHPSEVQFECIPQAILGVDLLCQAKSGMGKTAVFVLSTLQQLDPIDGQIAALIMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKE++RFSKYM +KV VFFGGL I+KDEE L+ + P IV
Sbjct: 124 LAFQISKEFQRFSKYMPKVKVAVFFGGLSIKKDEEVLQKNCPHIV 168
>gi|29841421|gb|AAP06453.1| similar to NM_019693 HLA-B associated transcript 1 in Homo sapiens
[Schistosoma japonicum]
Length = 410
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 86/103 (83%), Gaps = 2/103 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTR 92
F + QHECIPQA+L MD+LCQAKSGMGKTAVFV+ATLQQL+ ++N VLV+CHTR
Sbjct: 63 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTR 122
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP 135
ELAFQISKEYERFSKYM IKVGVFFGG+PI+KD E L T +P
Sbjct: 123 ELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETL-TKSP 164
>gi|340384568|ref|XP_003390783.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like, partial
[Amphimedon queenslandica]
Length = 252
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 81/98 (82%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
QHECIPQA+LGMD++CQAKSGMGKTAVFV+ATLQQLE + V VLVMCH RELA+QI K
Sbjct: 105 QHECIPQAILGMDVICQAKSGMGKTAVFVIATLQQLEIVEGQVSVLVMCHARELAYQIYK 164
Query: 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
EYERFSKY +K VFFGG+ + KDEE LKT+ P IV
Sbjct: 165 EYERFSKYFDGVKTSVFFGGISVMKDEETLKTNCPHIV 202
>gi|323455519|gb|EGB11387.1| hypothetical protein AURANDRAFT_52520 [Aureococcus anophagefferens]
Length = 459
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 82/105 (78%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQAVLGMDI+CQAKSGMGKTAVFVLATL QLE D + VLVMCHTRE
Sbjct: 90 FEHPSEVQHECIPQAVLGMDIICQAKSGMGKTAVFVLATLHQLEPVDGEISVLVMCHTRE 149
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI EY RFSKY+ +KV VF+GG+PI +++ LK + P IV
Sbjct: 150 LAFQIKNEYARFSKYLPAVKVEVFYGGVPITQNKAALKANTPHIV 194
>gi|440912451|gb|ELR62017.1| ATP-dependent RNA helicase DDX39, partial [Bos grunniens mutus]
Length = 447
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/132 (61%), Positives = 90/132 (68%), Gaps = 27/132 (20%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---------------- 77
F + QHECIPQA+LGMDILCQAKSGMGKTAVFVLATLQQ+E
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQGTSTRVGSGQG 123
Query: 78 -TTD----------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 126
T+D V VLVMCHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KD
Sbjct: 124 RTSDIALRVCAPPAPQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKD 183
Query: 127 EEYLKTHNPQIV 138
EE LK + P +V
Sbjct: 184 EEVLKRNCPHVV 195
>gi|317575817|ref|NP_001187807.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
gi|308324021|gb|ADO29146.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
Length = 426
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 100/143 (69%), Gaps = 10/143 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQA+L MD+LCQAKSGMGKTAVFV+ATLQQL+ + + VLV+CHTR
Sbjct: 63 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEEEGMTRVLVLCHTR 122
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVV 152
ELA+QISKEYERFSKYM IKVGVFFGG+P+++D E P IV G ++
Sbjct: 123 ELAYQISKEYERFSKYMPKIKVGVFFGGMPLRRDIESFGKGAPHIV------VGTPGRIL 176
Query: 153 NVMDVRSGGWWLD-LEALILSKC 174
++ +R+ LD ++ I+ +C
Sbjct: 177 DL--IRNKALKLDNIKHFIIDEC 197
>gi|307105337|gb|EFN53587.1| hypothetical protein CHLNCDRAFT_136793 [Chlorella variabilis]
Length = 519
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 84/107 (78%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV++TLQQLE D V V+V+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVISTLQQLEPVDGQVSVVVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EYERF+ YM N++VG FFGGLPI++ E LK + P ++
Sbjct: 127 LAFQICHEYERFTTYMKNVRVGNFFGGLPIKQQREQLKDKDKCPHVI 173
>gi|290562595|gb|ADD38693.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
Length = 428
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 84/104 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHE IPQA+LGMD+LCQAKSGMGKTAVFV+ATLQQL+ +++ VLV+CHTRE
Sbjct: 64 FEHPSEVQHESIPQAILGMDVLCQAKSGMGKTAVFVIATLQQLDPEETHTRVLVLCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI 137
LAFQISKEYERFSK++ +KVGVFFGG+P++KD + L I
Sbjct: 124 LAFQISKEYERFSKFIPALKVGVFFGGVPLKKDMDLLSKQTIHI 167
>gi|402220874|gb|EJU00944.1| ATP-dependent RNA helicase SUB2 [Dacryopinax sp. DJM-731 SS1]
Length = 444
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 79 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVDGEVTVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +I+ VF+GG PI+ D E LK N P IV
Sbjct: 139 LAYQIKNEYGRFSKYMPDIRTAVFYGGTPIKNDIELLKDKNRCPHIV 185
>gi|353241933|emb|CCA73713.1| probable SUB2-mRNA export protein, member of the DEAD-box RNA
helicase superfamily [Piriformospora indica DSM 11827]
Length = 444
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LGMD+LCQAKSG GKTAVFVLATLQQL+T+++ V V+V+CHTRE
Sbjct: 63 FEHPSEVQQECIPQAILGMDVLCQAKSGHGKTAVFVLATLQQLDTSENKVSVIVLCHTRE 122
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIV 138
LAFQI EY RF++YM +++ VF+GG P+QKD+E LK+ P I+
Sbjct: 123 LAFQIKNEYSRFARYMPDVRTAVFYGGTPVQKDQELLKSAEVPHII 168
>gi|384493944|gb|EIE84435.1| ATP-dependent RNA helicase uap56 [Rhizopus delemar RA 99-880]
Length = 435
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E D +V V+V+CHTRE
Sbjct: 72 FEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPIDGDVSVVVLCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RFSKY+ +I+ VF+GG+PI KD E LK N P I+
Sbjct: 132 LAFQIKNEYARFSKYLPDIRTEVFYGGVPITKDIEILKDKNKCPHIL 178
>gi|392571877|gb|EIW65049.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 440
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRE
Sbjct: 77 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++VG F+GG P+ KD E L KT P IV
Sbjct: 137 LAFQIKNEYARFAKYMPDVRVGTFYGGTPVAKDAELLRDKTKCPHIV 183
>gi|405952463|gb|EKC20272.1| Spliceosome RNA helicase BAT1 [Crassostrea gigas]
Length = 424
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 84/105 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + QHECIPQAVL MD+LCQAKSGMGKTAVFV++TLQQ++ + +V VLV+ HTRE
Sbjct: 57 YEHPSQVQHECIPQAVLSMDVLCQAKSGMGKTAVFVISTLQQIQESIDDVVVLVIAHTRE 116
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI+ EY+ FSKY+ IKV VFFGGLPI++DEE L + P IV
Sbjct: 117 LAYQIAHEYQTFSKYLPEIKVAVFFGGLPIKRDEEVLAKNRPNIV 161
>gi|393218766|gb|EJD04254.1| ATP-dependent RNA helicase SUB2 [Fomitiporia mediterranea MF3/22]
Length = 433
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRE
Sbjct: 70 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RF+KYM ++++ F+GG P+QKD E LK + P IV
Sbjct: 130 LAFQIRNEYNRFAKYMPDVRIATFYGGTPVQKDAEILKDKSKCPHIV 176
>gi|384245739|gb|EIE19232.1| nuclear RNA helicase-like protein Bat1 [Coccomyxa subellipsoidea
C-169]
Length = 435
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 1/126 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+ LQQLE ++ V L++CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSVLQQLEPVENEVAALIICHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQ-IVGLVNYETNLSGVVV 152
LA+QI E+ERFS YM N++V FFGG PI++ E LKT+ P +VG LS +
Sbjct: 127 LAYQICHEFERFSTYMPNVRVANFFGGFPIKQQIEQLKTNTPHAVVGTPGRLKQLSRSGL 186
Query: 153 NVMDVR 158
N+ +R
Sbjct: 187 NLKTIR 192
>gi|336374429|gb|EGO02766.1| hypothetical protein SERLA73DRAFT_150394 [Serpula lacrymans var.
lacrymans S7.3]
Length = 2522
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRE
Sbjct: 74 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++V F+GG P+ KD E L KT P IV
Sbjct: 134 LAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDSEILRDKTKCPHIV 180
>gi|302698637|ref|XP_003038997.1| hypothetical protein SCHCODRAFT_65145 [Schizophyllum commune H4-8]
gi|300112694|gb|EFJ04095.1| hypothetical protein SCHCODRAFT_65145 [Schizophyllum commune H4-8]
Length = 437
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE D V V+V+CHTRE
Sbjct: 74 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVDGEVAVIVLCHTRE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RF+KYM I+V F+GG P+ KD E L+ N P I+
Sbjct: 134 LAFQIRNEYTRFAKYMPQIRVSTFYGGTPVSKDAEILRDKNACPHII 180
>gi|390603969|gb|EIN13360.1| ATP-dependent RNA helicase SUB2 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 434
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRE
Sbjct: 71 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGQVSVLVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++V FFGG+P+ KD E L K P IV
Sbjct: 131 LAFQIKNEYARFAKYMPDVRVATFFGGVPVTKDAETLRDKAKCPHIV 177
>gi|403414604|emb|CCM01304.1| predicted protein [Fibroporia radiculosa]
Length = 440
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRE
Sbjct: 77 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++V F+GG P+ KD E L KT P IV
Sbjct: 137 LAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDAELLRDKTKCPHIV 183
>gi|449550559|gb|EMD41523.1| hypothetical protein CERSUDRAFT_110074 [Ceriporiopsis subvermispora
B]
Length = 440
Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLVMCHTRE
Sbjct: 77 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVMCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++V F+GG P+ KD E L K+ P IV
Sbjct: 137 LAFQIKNEYSRFAKYMPDVRVSTFYGGTPVAKDAELLRDKSKCPHIV 183
>gi|395828829|ref|XP_003787566.1| PREDICTED: spliceosome RNA helicase DDX39B-like isoform 2 [Otolemur
garnettii]
Length = 431
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/108 (71%), Positives = 84/108 (77%), Gaps = 3/108 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQ++LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHT+E
Sbjct: 65 FEHPSEVQHECIPQSILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTQE 124
Query: 94 LAFQISKEYERFSKYMSN---IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFVFFGGLSIKKDEEVLKKNCPHIV 172
>gi|336387322|gb|EGO28467.1| hypothetical protein SERLADRAFT_458898 [Serpula lacrymans var.
lacrymans S7.9]
Length = 437
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRE
Sbjct: 74 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++V F+GG P+ KD E L KT P IV
Sbjct: 134 LAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDSEILRDKTKCPHIV 180
>gi|170085389|ref|XP_001873918.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651470|gb|EDR15710.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 434
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRE
Sbjct: 71 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++V F+GG P+ KD E L KT P IV
Sbjct: 131 LAFQIKNEYTRFAKYMPDVRVSTFYGGTPVTKDAEILRDKTKCPHIV 177
>gi|389742315|gb|EIM83502.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 435
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 97/144 (67%), Gaps = 11/144 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRE
Sbjct: 72 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVGLVNYETNLSGVV 151
LAFQI EY RF+KYM +++V FFGG P+ KD E L KT P IV V L+ +V
Sbjct: 132 LAFQIKNEYTRFAKYMPDVRVVTFFGGTPVSKDAELLRDKTKCPHIV--VATPGRLNALV 189
Query: 152 VN-VMDVRSGGWWLDLEALILSKC 174
+ VMD + +++ +L +C
Sbjct: 190 RDKVMDAK------NVKHFVLDEC 207
>gi|169844510|ref|XP_001828976.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130]
gi|116510088|gb|EAU92983.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130]
Length = 432
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRE
Sbjct: 69 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++V F+GG P+ KD E L KT P IV
Sbjct: 129 LAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDAEILRDKTKCPHIV 175
>gi|443925691|gb|ELU44467.1| ATP-dependent RNA helicase SUB2 [Rhizoctonia solani AG-1 IA]
Length = 1773
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE D V V+V+CHTRE
Sbjct: 69 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVDGEVSVIVLCHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFS+YM +++ GV FGG P+ KD E L KT P I+
Sbjct: 129 LAYQIRNEYTRFSRYMPDVRTGVVFGGTPVAKDIELLKDKTKCPHII 175
>gi|409083278|gb|EKM83635.1| hypothetical protein AGABI1DRAFT_110279 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426201670|gb|EKV51593.1| hypothetical protein AGABI2DRAFT_189825 [Agaricus bisporus var.
bisporus H97]
Length = 439
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRE
Sbjct: 76 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRE 135
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RF+KYM +++V F+GG P+ KD E L+ N P IV
Sbjct: 136 LAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDAEILRDKNKCPHIV 182
>gi|367021668|ref|XP_003660119.1| hypothetical protein MYCTH_2298018 [Myceliophthora thermophila ATCC
42464]
gi|347007386|gb|AEO54874.1| hypothetical protein MYCTH_2298018 [Myceliophthora thermophila ATCC
42464]
Length = 434
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/109 (66%), Positives = 80/109 (73%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVF+GG PIQKDEE LK TH IVG
Sbjct: 130 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDEEILKNKETHPHIIVG 178
>gi|299116076|emb|CBN74492.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 865
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 94/142 (66%), Gaps = 9/142 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LG+DI+CQAKSGMGKTAVFVLATL QL V LV+CHTRE
Sbjct: 79 FEHPSEVQHECIPQAILGVDIVCQAKSGMGKTAVFVLATLHQLNPQPGEVSCLVLCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA+QI++EYERF K++ +KV V +GGLP+QK E LK P IV G V+
Sbjct: 139 LAWQIAREYERFCKHLPEVKVAVLYGGLPVQKQREMLKNDTPHIV------VGCPGRVMQ 192
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+ VR G +D L+ +L +C
Sbjct: 193 L--VREGDLKVDKLQYFVLDEC 212
>gi|392597062|gb|EIW86384.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 435
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRE
Sbjct: 72 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++V F+GG P+ KD E L K+ P IV
Sbjct: 132 LAFQIKNEYSRFAKYMPDVRVSTFYGGTPVTKDAETLRDKSKCPHIV 178
>gi|225320657|dbj|BAH29724.1| DEAD box ATP-dependent RNA helicase [Dicyema japonicum]
Length = 423
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QH+CIPQA+L MDI+CQAKSGMGKTAV+VL+TL QL+ +NV LV+CHTRE
Sbjct: 62 FEHPSEVQHQCIPQAILNMDIVCQAKSGMGKTAVYVLSTLHQLDENCTNVDTLVLCHTRE 121
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKY+ +KV V FGG+P+Q D L+ NPQ+V
Sbjct: 122 LAFQISKEYERFSKYLPEVKVAVCFGGIPMQLDISKLRK-NPQVV 165
>gi|402072782|gb|EJT68479.1| hypothetical protein GGTG_13947, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 217
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/109 (66%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 73 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 132
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVFFGG PIQKD E LK TH IVG
Sbjct: 133 LAFQIRNEYTRFSKYMPDIKTGVFFGGTPIQKDAELLKNKDTHPHIIVG 181
>gi|389646607|ref|XP_003720935.1| ATP-dependent RNA helicase SUB2 [Magnaporthe oryzae 70-15]
gi|152112305|sp|A4RBS3.1|SUB2_MAGO7 RecName: Full=ATP-dependent RNA helicase SUB2
gi|351638327|gb|EHA46192.1| ATP-dependent RNA helicase SUB2 [Magnaporthe oryzae 70-15]
Length = 436
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/109 (66%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 72 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVFFGG PIQKD E LK TH IVG
Sbjct: 132 LAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKETHPHIIVG 180
>gi|384487135|gb|EIE79315.1| ATP-dependent RNA helicase uap56 [Rhizopus delemar RA 99-880]
Length = 434
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQ++LGMD+LCQAKSGMGKTAVFVLATLQQLE + V V+V+CHTRE
Sbjct: 71 FEHPSEVQQECIPQSILGMDVLCQAKSGMGKTAVFVLATLQQLEPVNGEVSVIVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RFSKY+ +I+ VF+GG+P+ KD E LK N P I+
Sbjct: 131 LAFQIKNEYARFSKYLPDIRTEVFYGGVPMTKDVETLKDKNKCPHIL 177
>gi|294882024|ref|XP_002769569.1| helicase, putative [Perkinsus marinus ATCC 50983]
gi|239873121|gb|EER02287.1| helicase, putative [Perkinsus marinus ATCC 50983]
Length = 439
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--ETTDSNVYVLVMCHT 91
F + QHE IPQA+LG DILCQAKSGMGKTAVFVLA LQQL + DS+V VL+MCHT
Sbjct: 70 FEHPSEVQHEAIPQAILGTDILCQAKSGMGKTAVFVLAILQQLNVDEKDSDVKVLIMCHT 129
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
RELA+QI E++RFSKY N+K GV +GG+PI +D+E L +PQI+
Sbjct: 130 RELAYQIKNEFDRFSKYFPNVKNGVVYGGVPISEDKEMLSKSHPQIL 176
>gi|388584005|gb|EIM24306.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 427
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LGMD++CQAKSGMGKTAVFVLA+LQQ+E D V V+V+CHTRE
Sbjct: 64 FEHPSEVQQECIPQAILGMDVVCQAKSGMGKTAVFVLASLQQVEPVDGEVSVIVLCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ NI+ VFFGG+PI D+E LK P ++
Sbjct: 124 LAYQIKNEYGRFSKYVPNIRTSVFFGGVPITTDQETLKNKEKCPHVI 170
>gi|384500538|gb|EIE91029.1| ATP-dependent RNA helicase uap56 [Rhizopus delemar RA 99-880]
Length = 433
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQ++LGMD+LCQAKSGMGKTAVFVLATLQQLE + V V+++CHTRE
Sbjct: 70 FEHPSEVQQECIPQSILGMDVLCQAKSGMGKTAVFVLATLQQLEPINGEVSVIILCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RFSKY+ +I+ VF+GG+P+ KD E LK N P I+
Sbjct: 130 LAFQIKNEYARFSKYLPDIRTEVFYGGVPMTKDVETLKDKNKCPHIL 176
>gi|395326047|gb|EJF58461.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 438
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRE
Sbjct: 75 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRE 134
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM +++V FFGG P+ KD + L K+ P IV
Sbjct: 135 LAFQIRNEYSRFAKYMPDVRVNTFFGGTPVVKDADLLRDKSKCPHIV 181
>gi|336264515|ref|XP_003347034.1| hypothetical protein SMAC_05233 [Sordaria macrospora k-hell]
gi|380093114|emb|CCC09351.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 434
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVF+GG PIQKD E LK TH IVG
Sbjct: 130 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEILKNKETHPHIIVG 178
>gi|357135173|ref|XP_003569186.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like
[Brachypodium distachyon]
Length = 429
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 68 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+S KV VF+GG+ I+K ++ LK P IV
Sbjct: 128 LAYQICNEFERFSKYLSETKVAVFYGGVHIKKHKDLLKNECPHIV 172
>gi|336463284|gb|EGO51524.1| ATP-dependent RNA helicase [Neurospora tetrasperma FGSC 2508]
gi|350297513|gb|EGZ78490.1| ATP-dependent RNA helicase [Neurospora tetrasperma FGSC 2509]
Length = 434
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVF+GG PIQKD E LK TH IVG
Sbjct: 130 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVG 178
>gi|164423323|ref|XP_964893.2| ATP-dependent RNA helicase [Neurospora crassa OR74A]
gi|157070045|gb|EAA35657.2| ATP-dependent RNA helicase [Neurospora crassa OR74A]
Length = 434
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVF+GG PIQKD E LK TH IVG
Sbjct: 130 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVG 178
>gi|367042132|ref|XP_003651446.1| hypothetical protein THITE_2111758 [Thielavia terrestris NRRL 8126]
gi|346998708|gb|AEO65110.1| hypothetical protein THITE_2111758 [Thielavia terrestris NRRL 8126]
Length = 434
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVF+GG PIQKD E LK TH IVG
Sbjct: 130 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEILKNKETHPHIIVG 178
>gi|320586489|gb|EFW99159.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 440
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA++G DI+CQAKSG+GKTAVFVLATLQQ+E VLVMCHTRE
Sbjct: 76 FEHPSEVQQTCIPQALIGGDIICQAKSGLGKTAVFVLATLQQIEPVAGECSVLVMCHTRE 135
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM IK GVF+GG PIQKD E L+ TH IVG
Sbjct: 136 LAFQIRNEYNRFSKYMPEIKTGVFYGGTPIQKDAEILRNKETHPHIIVG 184
>gi|409051252|gb|EKM60728.1| hypothetical protein PHACADRAFT_246819 [Phanerochaete carnosa
HHB-10118-sp]
Length = 437
Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLVMCHTRE
Sbjct: 74 FEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVMCHTRE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RF+KYM ++++ FFGG+ I KD+ L K+ P IV
Sbjct: 134 LAFQIKNEYTRFAKYMPDVRISTFFGGIGIDKDKALLVDKSKCPHIV 180
>gi|116193535|ref|XP_001222580.1| ATP-dependent RNA helicase [Chaetomium globosum CBS 148.51]
gi|118577976|sp|Q2H4D0.1|SUB2_CHAGB RecName: Full=ATP-dependent RNA helicase SUB2
gi|88182398|gb|EAQ89866.1| ATP-dependent RNA helicase [Chaetomium globosum CBS 148.51]
Length = 434
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVF+GG PIQKD E LK TH IVG
Sbjct: 130 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVG 178
>gi|340975684|gb|EGS22799.1| hypothetical protein CTHT_0012740 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 434
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 78/109 (71%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVPGECSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM IK GVF+GG PIQKD E LK TH IVG
Sbjct: 130 LAFQIRNEYNRFSKYMPEIKTGVFYGGTPIQKDAEILKNKDTHPHIIVG 178
>gi|302419503|ref|XP_003007582.1| ATP-dependent RNA helicase SUB2 [Verticillium albo-atrum VaMs.102]
gi|261353233|gb|EEY15661.1| ATP-dependent RNA helicase SUB2 [Verticillium albo-atrum VaMs.102]
Length = 420
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E V VLVMCHTRE
Sbjct: 74 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGEVSVLVMCHTRE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RFSKYM +IK GVF+GG PIQKD E +K + P I+
Sbjct: 134 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNKDTCPHII 180
>gi|294954356|ref|XP_002788127.1| helicase, putative [Perkinsus marinus ATCC 50983]
gi|239903342|gb|EER19923.1| helicase, putative [Perkinsus marinus ATCC 50983]
Length = 485
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--ETTDSNVYVLVMCHT 91
F + QHE IPQA+LG DILCQAKSGMGKTAVFVLA LQQL + D++V VL+MCHT
Sbjct: 70 FEHPSEVQHEAIPQAILGTDILCQAKSGMGKTAVFVLAILQQLNIDEKDTDVKVLIMCHT 129
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
RELA+QI E++RFSKY N+K GV +GG+PI +D+E L +PQI+
Sbjct: 130 RELAYQIKNEFDRFSKYFPNVKNGVVYGGVPISEDKEMLSKSHPQIL 176
>gi|380495255|emb|CCF32532.1| ATP-dependent RNA helicase SUB2 [Colletotrichum higginsianum]
Length = 433
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E V VLVMCHTRE
Sbjct: 69 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQVEPVQGEVSVLVMCHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RFSKYM +IK GVF+GG PIQKD E +K P I+
Sbjct: 129 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNKETCPHII 175
>gi|310791038|gb|EFQ26567.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 433
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E V VLVMCHTRE
Sbjct: 69 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQVEPVQGEVSVLVMCHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RFSKYM +IK GVF+GG PIQKD E +K P I+
Sbjct: 129 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNKETCPHII 175
>gi|357135175|ref|XP_003569187.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like
[Brachypodium distachyon]
Length = 428
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+S +V VF+GG+ I+K ++ LK P IV
Sbjct: 127 LAYQICNEFERFSKYLSETRVAVFYGGVHIKKHKDLLKNECPHIV 171
>gi|429853298|gb|ELA28379.1| ATP-dependent RNA helicase [Colletotrichum gloeosporioides Nara
gc5]
Length = 434
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E V VLVMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQVEPVQGEVSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RFSKYM +IK GVF+GG PIQKD E +K P I+
Sbjct: 130 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNKETCPHII 176
>gi|413948693|gb|AFW81342.1| spliceosome RNA helicase BAT1 isoform 1 [Zea mays]
gi|413948694|gb|AFW81343.1| spliceosome RNA helicase BAT1 isoform 2 [Zea mays]
gi|413948695|gb|AFW81344.1| spliceosome RNA helicase BAT1 isoform 3 [Zea mays]
Length = 429
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 82/105 (78%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRE
Sbjct: 68 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAALVLCHTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY++ +KV VF+GG+ I+K ++ LK P IV
Sbjct: 128 LAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECPHIV 172
>gi|226506726|ref|NP_001141599.1| uncharacterized protein LOC100273717 [Zea mays]
gi|224032233|gb|ACN35192.1| unknown [Zea mays]
Length = 429
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 82/105 (78%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRE
Sbjct: 68 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAALVLCHTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY++ +KV VF+GG+ I+K ++ LK P IV
Sbjct: 128 LAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECPHIV 172
>gi|393247739|gb|EJD55246.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 440
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 75/98 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQAV GMD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRE
Sbjct: 77 FEHPSEVQQECIPQAVFGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
LAFQI EY RF+KYM I+ VF+GG P+QKD E LK
Sbjct: 137 LAFQIRNEYIRFAKYMPEIRTSVFYGGTPVQKDAEILK 174
>gi|321250096|ref|XP_003191688.1| ATP dependent RNA helicase [Cryptococcus gattii WM276]
gi|317458155|gb|ADV19901.1| ATP dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 442
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRE
Sbjct: 79 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI E+ RFSK+M+N++ GVF+GG PI D+E L K P IV
Sbjct: 139 LAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIV 185
>gi|58259249|ref|XP_567037.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134107387|ref|XP_777578.1| hypothetical protein CNBA7000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819535|sp|P0CQ97.1|SUB2_CRYNB RecName: Full=ATP-dependent RNA helicase SUB2
gi|338819536|sp|P0CQ96.1|SUB2_CRYNJ RecName: Full=ATP-dependent RNA helicase SUB2
gi|50260272|gb|EAL22931.1| hypothetical protein CNBA7000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223174|gb|AAW41218.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 442
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRE
Sbjct: 79 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI E+ RFSK+M+N++ GVF+GG PI D+E L K P IV
Sbjct: 139 LAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIV 185
>gi|225442993|ref|XP_002268833.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56 [Vitis vinifera]
gi|297743441|emb|CBI36308.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECPHIV 171
>gi|224092470|ref|XP_002309623.1| predicted protein [Populus trichocarpa]
gi|222855599|gb|EEE93146.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E T V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIV 171
>gi|226528292|ref|NP_001149406.1| spliceosome RNA helicase BAT1 [Zea mays]
gi|195627032|gb|ACG35346.1| spliceosome RNA helicase BAT1 [Zea mays]
Length = 399
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 82/105 (78%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY++ +KV VF+GG+ I+K ++ LK P IV
Sbjct: 127 LAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECPHIV 171
>gi|118482305|gb|ABK93079.1| unknown [Populus trichocarpa]
Length = 428
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E T V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIV 171
>gi|405118096|gb|AFR92871.1| ATP-dependent RNA helicase sub2 [Cryptococcus neoformans var.
grubii H99]
Length = 430
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRE
Sbjct: 67 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI E+ RFSK+M+N++ GVF+GG PI D+E L K P IV
Sbjct: 127 LAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIV 173
>gi|58259251|ref|XP_567038.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57223175|gb|AAW41219.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 430
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRE
Sbjct: 67 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI E+ RFSK+M+N++ GVF+GG PI D+E L K P IV
Sbjct: 127 LAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIV 173
>gi|322709683|gb|EFZ01259.1| ATP-dependent RNA helicase [Metarhizium anisopliae ARSEF 23]
Length = 434
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +IK GVFFGG PI+ D E LK + P I+
Sbjct: 130 LAYQIRDEYNRFSKYMPDIKTGVFFGGTPIKTDMETLKNKDTCPHII 176
>gi|322701372|gb|EFY93122.1| ATP-dependent RNA helicase [Metarhizium acridum CQMa 102]
Length = 434
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +IK GVFFGG PI+ D E LK + P I+
Sbjct: 130 LAYQIRDEYNRFSKYMPDIKTGVFFGGTPIKTDMETLKNKDTCPHII 176
>gi|41054355|ref|NP_956015.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa [Danio rerio]
gi|27503947|gb|AAH42330.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39a [Danio rerio]
gi|182888744|gb|AAI64154.1| Ddx39a protein [Danio rerio]
Length = 346
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 75/87 (86%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKYMS+
Sbjct: 1 MDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMSS 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+K VFFGG+ I+KDE+ LK + P IV
Sbjct: 61 VKCAVFFGGMSIKKDEDVLKKNCPHIV 87
>gi|357135163|ref|XP_003569181.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like
[Brachypodium distachyon]
Length = 428
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+S KV VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSKYLSETKVAVFYGGVNIKNHKDLLKNECPHIV 171
>gi|330790076|ref|XP_003283124.1| DEAD/DEAH box helicase [Dictyostelium purpureum]
gi|325086991|gb|EGC40373.1| DEAD/DEAH box helicase [Dictyostelium purpureum]
Length = 426
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q+ECIPQA+LG D++CQAKSGMGKTAVFV++TLQQL+ S V LV+CHTRE
Sbjct: 66 FEHPSEVQNECIPQAILGSDLICQAKSGMGKTAVFVISTLQQLDNNPSGVTTLVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI EY+RF+KY+ NIK V +GG+P+Q ++ LK P IV
Sbjct: 126 LAYQICDEYDRFTKYLPNIKTAVIYGGIPVQTHKDLLKEKKPNIV 170
>gi|321475028|gb|EFX85992.1| hypothetical protein DAPPUDRAFT_309072 [Daphnia pulex]
Length = 425
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 82/105 (78%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q EC+PQAVLGMD+LC+AKSG GKT VFVLATLQQLET ++ V VLV+CH+RE
Sbjct: 61 FEHLSEVQRECLPQAVLGMDVLCRAKSGTGKTTVFVLATLQQLETVENQVCVLVVCHSRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA QI YE SK+M+ IKVGVF GG+ I+KDEE LKT+ P IV
Sbjct: 121 LAIQIYNAYECLSKHMTTIKVGVFVGGVNIRKDEEALKTNCPHIV 165
>gi|397594911|gb|EJK56348.1| hypothetical protein THAOC_23784 [Thalassiosira oceanica]
Length = 412
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 82/110 (74%), Gaps = 5/110 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVM 88
F + QHECIPQAVLGMDI+CQAKSGMGKTAVFVLATL QL+ ++ V VLV+
Sbjct: 46 FEHPSEVQHECIPQAVLGMDIVCQAKSGMGKTAVFVLATLHQLDPNAFPAGENQVSVLVL 105
Query: 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
CHTRELAFQI+ EYERFSKY+ +K VF+GG+ I+ + + LK P IV
Sbjct: 106 CHTRELAFQIAHEYERFSKYLPEVKTAVFYGGVAIKTNRDVLKNDCPHIV 155
>gi|358384845|gb|EHK22442.1| hypothetical protein TRIVIDRAFT_84043 [Trichoderma virens Gv29-8]
Length = 433
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRE
Sbjct: 69 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +IK GVF+GG PI+ D E LK+ + P I+
Sbjct: 129 LAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKNDVETLKSKDTCPHII 175
>gi|86196514|gb|EAQ71152.1| hypothetical protein MGCH7_ch7g559 [Magnaporthe oryzae 70-15]
gi|440472238|gb|ELQ41114.1| ATP-dependent RNA helicase SUB2 [Magnaporthe oryzae Y34]
gi|440482200|gb|ELQ62715.1| ATP-dependent RNA helicase SUB2 [Magnaporthe oryzae P131]
Length = 450
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
Query: 44 CIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103
CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY
Sbjct: 96 CIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYN 155
Query: 104 RFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
RFSKYM +IK GVFFGG PIQKD E LK TH IVG
Sbjct: 156 RFSKYMPDIKTGVFFGGTPIQKDAELLKNKETHPHIIVG 194
>gi|168035593|ref|XP_001770294.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678511|gb|EDQ64969.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 425
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 124 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIV 168
>gi|255548938|ref|XP_002515525.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223545469|gb|EEF46974.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 275
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E T V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSTYLPDTKVAVFYGGVHIKIHKDLLKNECPHIV 171
>gi|401889098|gb|EJT53038.1| ATP dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 968
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA+LQQLE D V ++V+CHTRE
Sbjct: 171 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLASLQQLEPVDGEVSIIVLCHTRE 230
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI E+ RFSKYM ++ VF+GG PI D+E L K P IV
Sbjct: 231 LAYQIRNEFTRFSKYMPEVRTSVFYGGTPISADQEILASKEKCPHIV 277
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 47/59 (79%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA+LQQLE D V ++V+CHTR
Sbjct: 73 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLASLQQLEPVDGEVSIIVLCHTR 131
>gi|331227385|ref|XP_003326361.1| ATP-dependent RNA helicase uap56 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305351|gb|EFP81942.1| ATP-dependent RNA helicase uap56 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 433
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 86/120 (71%), Gaps = 4/120 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LGMD+LCQAKSGMGKTAVFV ATLQQ++ + V +LV+CHTRE
Sbjct: 70 FEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVTATLQQMDPKEGEVSMLVLCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVGLVNYETNLSGVV 151
LA+QI EY RFSKYM +I+ V +GG+PI++D E LK + P I LV L+ +V
Sbjct: 130 LAYQIKNEYARFSKYMPDIRTAVVYGGIPIKQDAEMLKAKDKCPHI--LVGTPGRLNALV 187
>gi|168059571|ref|XP_001781775.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666777|gb|EDQ53423.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 432
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 124 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIV 168
>gi|143456603|sp|Q0JM17.2|RH56_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 56
gi|57899406|dbj|BAD88053.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
Group]
gi|215695226|dbj|BAG90417.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258618301|gb|ACV83946.1| DExD box helicase protein HLA-B associated transcript 1 [Oryza
sativa Japonica Group]
Length = 432
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRE
Sbjct: 71 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+ +KV VF+GG+ I+K ++ LK P IV
Sbjct: 131 LAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIV 175
>gi|115437444|ref|NP_001043297.1| Os01g0549700 [Oryza sativa Japonica Group]
gi|113532828|dbj|BAF05211.1| Os01g0549700, partial [Oryza sativa Japonica Group]
Length = 495
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRE
Sbjct: 134 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRE 193
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+ +KV VF+GG+ I+K ++ LK P IV
Sbjct: 194 LAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIV 238
>gi|225430261|ref|XP_002285072.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Vitis
vinifera]
Length = 428
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIV 171
>gi|224143128|ref|XP_002324856.1| predicted protein [Populus trichocarpa]
gi|222866290|gb|EEF03421.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E T V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ + KV VF+GG+ ++ ++ LK P +V
Sbjct: 127 LAYQICHEFERFSTYLPDTKVAVFYGGVNVKTHKDLLKNECPHVV 171
>gi|224013446|ref|XP_002296387.1| dead box family RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220968739|gb|EED87083.1| dead box family RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 433
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 81/110 (73%), Gaps = 5/110 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVM 88
F + QHECIPQAVLGMDI+CQAKSGMGKTAVFVLATL QL ++ V VLV+
Sbjct: 67 FEHPSEVQHECIPQAVLGMDIVCQAKSGMGKTAVFVLATLHQLNPNAFPAGENQVSVLVL 126
Query: 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
CHTRELAFQI+ EYERFSKY+ +K VF+GG+ I+ + + LK P IV
Sbjct: 127 CHTRELAFQIAHEYERFSKYLPEVKTAVFYGGVSIKTNRDVLKNDCPHIV 176
>gi|115437448|ref|NP_001043298.1| Os01g0550000 [Oryza sativa Japonica Group]
gi|75320875|sp|Q5JK84.1|RH15_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 15
gi|57899408|dbj|BAD88055.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
Group]
gi|57900053|dbj|BAD88115.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
Group]
gi|113532829|dbj|BAF05212.1| Os01g0550000 [Oryza sativa Japonica Group]
gi|215768539|dbj|BAH00768.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218188434|gb|EEC70861.1| hypothetical protein OsI_02373 [Oryza sativa Indica Group]
Length = 432
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRE
Sbjct: 71 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+ +KV VF+GG+ I+K ++ LK P IV
Sbjct: 131 LAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIV 175
>gi|222618647|gb|EEE54779.1| hypothetical protein OsJ_02176 [Oryza sativa Japonica Group]
Length = 429
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRE
Sbjct: 68 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+ +KV VF+GG+ I+K ++ LK P IV
Sbjct: 128 LAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIV 172
>gi|400600996|gb|EJP68664.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 432
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRE
Sbjct: 68 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +IK GVF+GG PI+ D E LK + P I+
Sbjct: 128 LAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKDTCPHII 174
>gi|317106728|dbj|BAJ53224.1| JHL06P13.3 [Jatropha curcas]
Length = 455
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDILKNECPHIV 171
>gi|357466255|ref|XP_003603412.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355492460|gb|AES73663.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 427
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK PQIV
Sbjct: 126 LAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIV 170
>gi|224156267|ref|XP_002337696.1| predicted protein [Populus trichocarpa]
gi|222869567|gb|EEF06698.1| predicted protein [Populus trichocarpa]
Length = 247
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E T V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ + KV VF+GG+ ++ ++ LK P +V
Sbjct: 127 LAYQICHEFERFSTYLPDTKVAVFYGGVNVKTHKDLLKNECPHVV 171
>gi|403302836|ref|XP_003942056.1| PREDICTED: uncharacterized protein LOC101036182 [Saimiri
boliviensis boliviensis]
Length = 334
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/82 (79%), Positives = 70/82 (85%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 88 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 147
Query: 94 LAFQISKEYERFSKYMSNIKVG 115
LAFQISKEYERFSKYM N+K+G
Sbjct: 148 LAFQISKEYERFSKYMPNVKMG 169
>gi|342874043|gb|EGU76118.1| hypothetical protein FOXB_13364 [Fusarium oxysporum Fo5176]
Length = 495
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 90/136 (66%), Gaps = 10/136 (7%)
Query: 10 GVTVKVLSSRNRREKEDRIGESQPFREQT-----SFQHECIPQAVLGMDILCQAKSGMGK 64
G + +S RN+ E R P T + Q CIPQA+LG DI+CQAKSG+GK
Sbjct: 105 GSERRSVSGRNKTTGERR---GSPQNHSTVVTIITLQQTCIPQALLGGDIICQAKSGLGK 161
Query: 65 TAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ 124
TAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFSKYM +IK GVF+GG PI+
Sbjct: 162 TAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIK 221
Query: 125 KDEEYLKTHN--PQIV 138
D E LK + P I+
Sbjct: 222 TDMETLKNKDTCPHII 237
>gi|358393635|gb|EHK43036.1| hypothetical protein TRIATDRAFT_301009 [Trichoderma atroviride IMI
206040]
Length = 436
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRE
Sbjct: 72 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +IK GVF+GG PI+ D E LK + P I+
Sbjct: 132 LAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKNDVETLKGKDTCPHII 178
>gi|406699078|gb|EKD02297.1| ATP dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 391
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA+LQQLE D V ++V+CHTRE
Sbjct: 73 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLASLQQLEPVDGEVSIIVLCHTRE 132
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI E+ RFSKYM ++ VF+GG PI D+E L K P IV
Sbjct: 133 LAYQIRNEFTRFSKYMPEVRTSVFYGGTPISADQEILASKEKCPHIV 179
>gi|171684483|ref|XP_001907183.1| hypothetical protein [Podospora anserina S mat+]
gi|170942202|emb|CAP67854.1| unnamed protein product [Podospora anserina S mat+]
Length = 433
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 78/109 (71%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 69 FEHPSEVQQTTIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVF+GG PIQKD E LK TH IVG
Sbjct: 129 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEILKNKDTHPHIIVG 177
>gi|440636017|gb|ELR05936.1| ATP-dependent RNA helicase sub2 [Geomyces destructans 20631-21]
Length = 439
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 75 FEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEPVSGECSVLVMCHTRE 134
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +K VF+GG PIQKD E LK + P I+
Sbjct: 135 LAYQIKNEYARFSKYMPEVKTAVFYGGTPIQKDAEILKNKDTHPHII 181
>gi|413950345|gb|AFW82994.1| hypothetical protein ZEAMMB73_566534 [Zea mays]
Length = 446
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 86 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRE 145
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+ ++V VF+GG+ I+ ++ LK P IV
Sbjct: 146 LAYQICHEFERFSKYLPELRVAVFYGGVHIKNHKDLLKNECPHIV 190
>gi|408388400|gb|EKJ68085.1| hypothetical protein FPSE_11685 [Fusarium pseudograminearum CS3096]
Length = 434
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +IK GVF+GG PI+ D E LK P I+
Sbjct: 130 LAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKETCPHII 176
>gi|409191772|gb|AFV30230.1| ATP-dependent RNA helicase [Medicago sativa]
Length = 427
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVL+TLQQ++ V L++CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y++++KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICHEFERFSTYLADLKVAVFYGGVNIKVHKDLLKNECPHIV 170
>gi|357436963|ref|XP_003588757.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355477805|gb|AES59008.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 427
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVL+TLQQ++ V L++CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y++++KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICHEFERFSTYLADLKVAVFYGGVNIKVHKDLLKNECPHIV 170
>gi|302918633|ref|XP_003052696.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733636|gb|EEU46983.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 434
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +IK GVF+GG PI+ D E LK P I+
Sbjct: 130 LAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKETCPHII 176
>gi|167522271|ref|XP_001745473.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775822|gb|EDQ89444.1| predicted protein [Monosiga brevicollis MX1]
Length = 431
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 94/143 (65%), Gaps = 10/143 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFV++TLQQLE + V VLV CHTRE
Sbjct: 60 FEHPSEVQQECIPQAILGGDVLCQAKSGMGKTAVFVISTLQQLEREEGKVNVLVSCHTRE 119
Query: 94 LAFQISKEYERFSKYMSNI-KVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVV 152
LA+QI++EYERFSK+ + K VF+GG PI KDE+ L+ P IV V L +
Sbjct: 120 LAYQIAREYERFSKFFDPVPKTAVFYGGTPIGKDEKVLRDDVPNIV--VGTPGRLKAL-- 175
Query: 153 NVMDVRSGGWWL-DLEALILSKC 174
V SG L +++ IL +C
Sbjct: 176 ----VNSGALKLSNVKHFILDEC 194
>gi|443894077|dbj|GAC71427.1| hypothetical protein PANT_3d00031 [Pseudozyma antarctica T-34]
Length = 277
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQ++LGMD++CQAKSGMGKTAVFVLATLQQ+E D V VLV+CHTRE
Sbjct: 91 FEHPSEVQQECIPQSILGMDVVCQAKSGMGKTAVFVLATLQQIEPVDGEVSVLVLCHTRE 150
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RF+KYM +++ GV +GG P+ +++ L KT P I+
Sbjct: 151 LAYQIRNEYARFTKYMPDVRTGVIYGGTPVAENQAMLKDKTKCPHIL 197
>gi|293331927|ref|NP_001170610.1| uncharacterized protein LOC100384654 [Zea mays]
gi|238006354|gb|ACR34212.1| unknown [Zea mays]
gi|413950343|gb|AFW82992.1| hypothetical protein ZEAMMB73_566534 [Zea mays]
gi|413950344|gb|AFW82993.1| hypothetical protein ZEAMMB73_566534 [Zea mays]
Length = 427
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 67 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+ ++V VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSKYLPELRVAVFYGGVHIKNHKDLLKNECPHIV 171
>gi|358058468|dbj|GAA95431.1| hypothetical protein E5Q_02085 [Mixia osmundae IAM 14324]
Length = 429
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LGMD+LCQAKSGMGKTAVFV ATLQQ+E D V V+V+CHTRE
Sbjct: 65 FEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVTATLQQIEPVDGEVAVIVLCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +++ VF+GG +KD E LK P +V
Sbjct: 125 LAYQIKNEYARFSKYMPDVRTSVFYGGTDPKKDAEVLKDKEKCPHVV 171
>gi|430811988|emb|CCJ30584.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 770
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
Q CIPQ++LGMDI+CQAKSGMGKTAVFVLATLQQ+E D V VLV CHTRELAFQI
Sbjct: 545 QQVCIPQSILGMDIICQAKSGMGKTAVFVLATLQQIEPVDGEVSVLVQCHTRELAFQIKN 604
Query: 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
EY RFSKYM +++ VF+GG P++ D E LK P I+
Sbjct: 605 EYARFSKYMPDVRTAVFYGGTPVRNDIELLKNKEKCPHII 644
>gi|406861567|gb|EKD14621.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 436
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTA+FVL +LQQ+E + VL+MCHTRE
Sbjct: 72 FEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAIFVLTSLQQIEPVNGETSVLIMCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PIQKD E LK + P I+
Sbjct: 132 LAYQIKNEYARFSKYMPDVKTSVFYGGTPIQKDAEILKNKDTHPHII 178
>gi|320162590|gb|EFW39489.1| nuclear RNA helicase [Capsaspora owczarzaki ATCC 30864]
Length = 433
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 77/105 (73%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QH CIPQA LG DI+CQAKSGMGKTAVFVL+TLQQL T+ V VLV+CHTRE
Sbjct: 67 FEHPSEVQHACIPQANLGSDIICQAKSGMGKTAVFVLSTLQQLVPTEGEVSVLVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI E++RF K+M IK VF+GG PI++DE L P +V
Sbjct: 127 LAFQIKNEFDRFIKFMPTIKTDVFYGGTPIKQDETKLAAGTPNVV 171
>gi|452987512|gb|EME87267.1| hypothetical protein MYCFIDRAFT_71177 [Pseudocercospora fijiensis
CIRAD86]
Length = 428
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL+TLQQ+E V VLVMCHTRE
Sbjct: 78 FEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLSTLQQIEPVAGEVSVLVMCHTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY+RFSKYM ++ VF+GG+PI ++E+ L KT +P IV
Sbjct: 138 LAFQIKNEYQRFSKYMPEVRTEVFYGGVPITENEKILRDKTTHPHIV 184
>gi|356519355|ref|XP_003528338.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine
max]
Length = 426
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IK VF+GG+ I+ +E LK P IV
Sbjct: 125 LAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIV 169
>gi|356526203|ref|XP_003531708.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine
max]
Length = 426
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IK VF+GG+ I+ +E LK P IV
Sbjct: 125 LAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIV 169
>gi|255645017|gb|ACU23008.1| unknown [Glycine max]
Length = 310
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IK VF+GG+ I+ +E LK P IV
Sbjct: 125 LAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIV 169
>gi|346325305|gb|EGX94902.1| ATP-dependent RNA helicase SUB2 [Cordyceps militaris CM01]
Length = 740
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/100 (66%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
Q CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI
Sbjct: 383 QQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRD 442
Query: 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
EY RFSKYM +IK GVF+GG PI+ D E LK + P I+
Sbjct: 443 EYNRFSKYMPDIKTGVFYGGTPIKTDMETLKNKDTCPHII 482
>gi|148694677|gb|EDL26624.1| HLA-B-associated transcript 1A [Mus musculus]
Length = 146
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 69/81 (85%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKV 114
LAFQISKEYERFSKYM N+KV
Sbjct: 125 LAFQISKEYERFSKYMPNVKV 145
>gi|164657043|ref|XP_001729648.1| hypothetical protein MGL_3192 [Malassezia globosa CBS 7966]
gi|159103541|gb|EDP42434.1| hypothetical protein MGL_3192 [Malassezia globosa CBS 7966]
Length = 435
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 97/143 (67%), Gaps = 9/143 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQ++LGMD++CQAKSGMGKTAVFVLA+LQQLE D V VLV+CHTRE
Sbjct: 72 FEHPSEVQQECIPQSILGMDVVCQAKSGMGKTAVFVLASLQQLEPVDGEVSVLVLCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVGLVNYETNLSGVV 151
LA+QI EY RF+KYM ++ V +GG PI++D+ L K P I LV ++G+V
Sbjct: 132 LAYQIRNEYARFTKYMPEVRTSVVYGGTPIKEDQAMLADKAKCPHI--LVGTPGRMNGLV 189
Query: 152 VNVMDVRSGGWWLDLEALILSKC 174
+ +++G D++ ++ +C
Sbjct: 190 RD-KSLKAG----DVKHFVIDEC 207
>gi|388856284|emb|CCF50093.1| probable ATP-dependent RNA helicase [Ustilago hordei]
Length = 431
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 77/98 (78%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQ++LGMD++CQAKSGMGKTAVFVLATLQQ+E D V VLV+CHTRE
Sbjct: 68 FEHPSEVQQECIPQSILGMDVVCQAKSGMGKTAVFVLATLQQIEPVDGEVSVLVLCHTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
LA+QI EY RF+KYM +++ GV +GG P+ +++ LK
Sbjct: 128 LAYQIRNEYHRFTKYMPDVRTGVIYGGTPVAENQAMLK 165
>gi|356507736|ref|XP_003522620.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine
max]
Length = 427
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIV 170
>gi|356515448|ref|XP_003526412.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform 1
[Glycine max]
gi|356515450|ref|XP_003526413.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform 2
[Glycine max]
Length = 427
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIV 170
>gi|343425824|emb|CBQ69357.1| probable ATP-dependent RNA helicase [Sporisorium reilianum SRZ2]
Length = 436
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 77/98 (78%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQ++LGMD++CQAKSGMGKTAVFVLATLQQ+E D V VLV+CHTRE
Sbjct: 73 FEHPSEVQQECIPQSILGMDVVCQAKSGMGKTAVFVLATLQQIEPVDGEVSVLVLCHTRE 132
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
LA+QI EY RF+KYM +++ GV +GG P+ +++ LK
Sbjct: 133 LAYQIRNEYARFTKYMPDVRTGVIYGGTPVAENQAMLK 170
>gi|449528365|ref|XP_004171175.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Cucumis
sativus]
Length = 427
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIV 170
>gi|340521389|gb|EGR51623.1| predicted protein [Trichoderma reesei QM6a]
Length = 433
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRE
Sbjct: 69 FEHPSEASQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +IK GVF+GG PI+ D E LK + P I+
Sbjct: 129 LAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKNDVETLKNKDTCPHII 175
>gi|296082026|emb|CBI21031.3| unnamed protein product [Vitis vinifera]
Length = 521
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 78/98 (79%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRELA+QI
Sbjct: 138 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHTRELAYQICH 197
Query: 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 198 EFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIV 235
>gi|217330694|gb|ACK38186.1| unknown [Medicago truncatula]
gi|218506067|gb|ACK77675.1| unknown [Medicago truncatula]
Length = 278
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 125 LAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIV 169
>gi|46128571|ref|XP_388839.1| hypothetical protein FG08663.1 [Gibberella zeae PH-1]
Length = 547
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 77/101 (76%), Gaps = 2/101 (1%)
Query: 40 FQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99
Q CIPQA+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI
Sbjct: 173 LQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIR 232
Query: 100 KEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
EY RFSKYM +IK GVF+GG PI+ D E LK P I+
Sbjct: 233 DEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKETCPHII 273
>gi|308811262|ref|XP_003082939.1| putative HLA-B associated transcript 1 (ISS) [Ostreococcus tauri]
gi|116054817|emb|CAL56894.1| putative HLA-B associated transcript 1 (ISS) [Ostreococcus tauri]
Length = 543
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 78/105 (74%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFV+ LQQLE T V +++C+TRE
Sbjct: 79 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVITVLQQLEPTHGEVGAVILCNTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QIS E+ERFS ++ ++ V FGG+PI + E LK + P IV
Sbjct: 139 LAYQISHEFERFSTFLGDVTTAVVFGGIPINQQREQLKLNPPNIV 183
>gi|71021713|ref|XP_761087.1| hypothetical protein UM04940.1 [Ustilago maydis 521]
gi|46100537|gb|EAK85770.1| hypothetical protein UM04940.1 [Ustilago maydis 521]
Length = 542
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 77/94 (81%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
++ Q ECIPQ++LGMD++CQAKSGMGKTAVFVLATLQQ+E D V VLV+CHTRELA+Q
Sbjct: 183 STVQQECIPQSILGMDVVCQAKSGMGKTAVFVLATLQQIEPVDGEVSVLVLCHTRELAYQ 242
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
I EY RF+KYM +++ GV +GG P+ +++ LK
Sbjct: 243 IRNEYARFTKYMPDVRTGVIYGGTPVAENQAMLK 276
>gi|294461150|gb|ADE76139.1| unknown [Picea sitchensis]
Length = 427
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERF Y++++KV VF+GG+ I+ + LK P IV
Sbjct: 126 LAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNECPHIV 170
>gi|378730355|gb|EHY56814.1| ATP-dependent RNA helicase sub2 [Exophiala dermatitidis NIH/UT8656]
Length = 441
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 94/144 (65%), Gaps = 11/144 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q +CIPQA+L +DILCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 77 FEHPSEVQQKCIPQALLSVDILCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVGLVNYETNLSGVV 151
LA+QI EY RFSKY+ ++K VF+GG PIQKD E LK P I+ V L+ +V
Sbjct: 137 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIELLKNKETFPNII--VGTPGRLNALV 194
Query: 152 VN-VMDVRSGGWWLDLEALILSKC 174
+ V+ +R +++A +L +C
Sbjct: 195 RDKVLSLR------NVKAFVLDEC 212
>gi|328856884|gb|EGG06003.1| hypothetical protein MELLADRAFT_48571 [Melampsora larici-populina
98AG31]
Length = 434
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LGMD+LCQAKSGMGKTAVFV ATLQQ++ D V +LV+CHTRE
Sbjct: 71 FEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVTATLQQIDPKDGEVSMLVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +++ V +GG+ I++D + LK + P I+
Sbjct: 131 LAYQIRNEYARFSKYMPDVRTAVVYGGVSIKQDADMLKAKDKCPHII 177
>gi|154302430|ref|XP_001551625.1| hypothetical protein BC1G_09999 [Botryotinia fuckeliana B05.10]
Length = 240
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LA+QI EY+RF +M ++K+GVF+GG+PI KD E LK TH IVG
Sbjct: 139 LAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETHPHIIVG 187
>gi|3805815|emb|CAA75074.1| BAT1 [Homo sapiens]
Length = 144
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/80 (80%), Positives = 68/80 (85%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIK 113
LAFQISKEYERFSKYM N+K
Sbjct: 125 LAFQISKEYERFSKYMPNVK 144
>gi|407920611|gb|EKG13800.1| Helicase [Macrophomina phaseolina MS6]
Length = 436
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA++G DILCQAKSG+GKTAVFVLATLQQLE VLV+CHTRE
Sbjct: 72 FEHPSEVQQNCIPQAIIGSDILCQAKSGLGKTAVFVLATLQQLEPIAGETAVLVLCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG P+QKD E L K +P I+
Sbjct: 132 LAYQIKNEYARFSKYLPDVKTSVFYGGTPMQKDIEILSNKDTHPHII 178
>gi|328773520|gb|EGF83557.1| hypothetical protein BATDEDRAFT_15696 [Batrachochytrium
dendrobatidis JAM81]
Length = 443
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 82/110 (74%), Gaps = 5/110 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVM 88
F + Q ECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQL+T+ S+ V+V+
Sbjct: 77 FEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLDTSAAAGAPSDPSVIVI 136
Query: 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
CHTRELA+QI EY RFSKY+ ++K V +GG I+++ + LK PQI+
Sbjct: 137 CHTRELAYQIKNEYARFSKYLPDVKTAVLYGGTSIRQNIDTLKNDKPQII 186
>gi|156055836|ref|XP_001593842.1| hypothetical protein SS1G_05270 [Sclerotinia sclerotiorum 1980]
gi|160358709|sp|A7EIX7.1|SUB2_SCLS1 RecName: Full=ATP-dependent RNA helicase sub2
gi|154703054|gb|EDO02793.1| hypothetical protein SS1G_05270 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 444
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LA+QI EY+RF +M ++K+GVF+GG+PI KD E LK TH IVG
Sbjct: 139 LAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETHPHIIVG 187
>gi|347828919|emb|CCD44616.1| similar to ATP-dependent RNA helicase sub2 [Botryotinia fuckeliana]
Length = 444
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LA+QI EY+RF +M ++K+GVF+GG+PI KD E LK TH IVG
Sbjct: 139 LAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETHPHIIVG 187
>gi|302806860|ref|XP_002985161.1| hypothetical protein SELMODRAFT_446187 [Selaginella moellendorffii]
gi|300146989|gb|EFJ13655.1| hypothetical protein SELMODRAFT_446187 [Selaginella moellendorffii]
Length = 473
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRE
Sbjct: 67 FEHPSEVQFECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPLKGQVAALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIV 171
>gi|302772815|ref|XP_002969825.1| hypothetical protein SELMODRAFT_146823 [Selaginella moellendorffii]
gi|300162336|gb|EFJ28949.1| hypothetical protein SELMODRAFT_146823 [Selaginella moellendorffii]
Length = 428
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRE
Sbjct: 67 FEHPSEVQFECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPLKGQVAALVLCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 127 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIV 171
>gi|145356615|ref|XP_001422523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582766|gb|ABP00840.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 358
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 76/100 (76%)
Query: 39 SFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98
+ QHECIPQA+LGMD+LCQAKSGMGKTAVFV+ LQQL+ V +VMCHTRELA+QI
Sbjct: 2 AVQHECIPQAILGMDVLCQAKSGMGKTAVFVITVLQQLDPVPGEVGAVVMCHTRELAYQI 61
Query: 99 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
S E+ERFS ++ ++ V FGG+PI + +E LK P IV
Sbjct: 62 SHEFERFSTFLGDVTTAVVFGGIPIAQQKEQLKLQPPNIV 101
>gi|219130818|ref|XP_002185552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402960|gb|EEC42917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 428
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT--DSNVYVLVMCHT 91
F + QHE IPQAVLG DI+CQAKSGMGKTAVFVLATL QL + +V VLV+CHT
Sbjct: 65 FEHPSEVQHESIPQAVLGGDIVCQAKSGMGKTAVFVLATLHQLNPSAESEDVQVLVLCHT 124
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
RELAFQI+ EYERFSKY+ +IK VF+GG+ + ++ + LK +P IV
Sbjct: 125 RELAFQIAHEYERFSKYLPSIKTAVFYGGVNVTQNRDILKKEHPHIV 171
>gi|281202577|gb|EFA76779.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
Length = 426
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q+ECIPQA+LG DI+CQAKSGMGKTAVFVL+ LQQ++ + V L++CHTRE
Sbjct: 65 FEHPSEVQNECIPQAILGHDIICQAKSGMGKTAVFVLSVLQQIDINPTGVVALILCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E++RF+KYMS +K V +GG+P+Q ++ L+ P IV
Sbjct: 125 LAYQICDEFDRFTKYMSTVKTAVIYGGMPVQTQKDMLRDRQPNIV 169
>gi|3776005|emb|CAA09205.1| RNA helicase [Arabidopsis thaliana]
Length = 451
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 90 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 149
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 150 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 194
>gi|388507678|gb|AFK41905.1| unknown [Medicago truncatula]
Length = 427
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVL+TLQQ++ V L++CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+E FS Y++++KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICHEFEGFSTYLADLKVAVFYGGVNIKVHKDLLKNECPHIV 170
>gi|297811229|ref|XP_002873498.1| hypothetical protein ARALYDRAFT_909079 [Arabidopsis lyrata subsp.
lyrata]
gi|297319335|gb|EFH49757.1| hypothetical protein ARALYDRAFT_909079 [Arabidopsis lyrata subsp.
lyrata]
Length = 427
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 170
>gi|260810752|ref|XP_002600113.1| hypothetical protein BRAFLDRAFT_57173 [Branchiostoma floridae]
gi|229285399|gb|EEN56125.1| hypothetical protein BRAFLDRAFT_57173 [Branchiostoma floridae]
Length = 148
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 69/83 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+L MD+LCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVAVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGV 116
LAFQISKEYERFSKYM IKV +
Sbjct: 124 LAFQISKEYERFSKYMPTIKVRI 146
>gi|345562936|gb|EGX45944.1| hypothetical protein AOL_s00112g133 [Arthrobotrys oligospora ATCC
24927]
Length = 443
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL TLQQL+ VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQLDPVAGETAVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +K VF+GG P+QKD E LK + P I+
Sbjct: 139 LAYQIRNEYTRFSKYMPEVKCSVFYGGTPMQKDIEVLKNKDTHPHII 185
>gi|392576759|gb|EIW69889.1| hypothetical protein TREMEDRAFT_73647 [Tremella mesenterica DSM
1558]
Length = 428
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRE
Sbjct: 65 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLACLQQIEPVDGEVSIIILCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI E+ RFSK+M+ ++ VF+GG PI D+E L K P IV
Sbjct: 125 LAYQIRNEFARFSKFMTAVRTAVFYGGTPISADQELLGNKEKCPHIV 171
>gi|297807157|ref|XP_002871462.1| hypothetical protein ARALYDRAFT_487950 [Arabidopsis lyrata subsp.
lyrata]
gi|297317299|gb|EFH47721.1| hypothetical protein ARALYDRAFT_487950 [Arabidopsis lyrata subsp.
lyrata]
Length = 427
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 170
>gi|18416493|ref|NP_568245.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|186522075|ref|NP_568244.2| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|108861899|sp|Q9LFN6.2|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56
gi|322510107|sp|Q56XG6.3|RH15_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 15
gi|14190381|gb|AAK55671.1|AF378868_1 AT5g11200/F2I11_90 [Arabidopsis thaliana]
gi|15450405|gb|AAK96496.1| AT5g11170/F2I11_60 [Arabidopsis thaliana]
gi|16323360|gb|AAL15393.1| AT5g11200/F2I11_90 [Arabidopsis thaliana]
gi|24111365|gb|AAN46806.1| At5g11170/F2I11_60 [Arabidopsis thaliana]
gi|110740954|dbj|BAE98572.1| DEAD BOX RNA helicase RH15 - like protein [Arabidopsis thaliana]
gi|332004259|gb|AED91642.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|332004262|gb|AED91645.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
Length = 427
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 170
>gi|385305885|gb|EIF49828.1| atp-dependent rna helicase sub2 [Dekkera bruxellensis AWRI1499]
Length = 433
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL+TLQQL+ T + +V+CHTRE
Sbjct: 69 FEHPSEVQQACIPQAILGNDVLCQAKSGLGKTAVFVLSTLQQLDPTPGEISTVVICHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +++ VF+GG+ I KDEE LK + P IV
Sbjct: 129 LAYQIRNEYVRFSKYMPDVRTAVFYGGISINKDEELLKNKDTCPHIV 175
>gi|8953382|emb|CAB96655.1| DEAD BOX RNA helicase RH15 [Arabidopsis thaliana]
Length = 427
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 170
>gi|8953379|emb|CAB96652.1| DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana]
Length = 435
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 170
>gi|238481240|ref|NP_001154707.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|332004264|gb|AED91647.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
Length = 468
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 170
>gi|19115173|ref|NP_594261.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe 972h-]
gi|59800426|sp|O13792.3|SUB2_SCHPO RecName: Full=ATP-dependent RNA helicase uap56
gi|2408027|emb|CAB16225.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe]
Length = 434
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSGMGKTAVFVL+TLQQ+E D V VLV+CHTRE
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RFSKY+ +++ VF+GG+ I++D E K+ +P IV
Sbjct: 131 LAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
>gi|303289024|ref|XP_003063800.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454868|gb|EEH52173.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 425
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 78/105 (74%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVLA LQQLE + L++CHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLAVLQQLEPVPGEIGALILCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ N+ V V FGG+ I++ +E L+ P +V
Sbjct: 124 LAYQIMHEFERFSVYLPNVNVSVVFGGVNIKQQKEELEAKPPSVV 168
>gi|441628856|ref|XP_003275725.2| PREDICTED: ATP-dependent RNA helicase DDX39A [Nomascus leucogenys]
Length = 424
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 70/82 (85%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVG 115
LAFQISKEYERFSKYM ++KV
Sbjct: 124 LAFQISKEYERFSKYMPSVKVS 145
>gi|238481238|ref|NP_001154706.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|332004263|gb|AED91646.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
Length = 486
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 170
>gi|213409820|ref|XP_002175680.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces japonicus
yFS275]
gi|212003727|gb|EEB09387.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces japonicus
yFS275]
Length = 434
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSGMGKTAVFVL+TLQQ+E D V VLV+CHTRE
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RFSKY+ +++ VF+GG+ I++D E K+ +P IV
Sbjct: 131 LAFQIKNEYARFSKYLPDVRTAVFYGGVNIKQDMEAFKDKSTSPHIV 177
>gi|197102480|ref|NP_001127486.1| spliceosome RNA helicase DDX39B [Pongo abelii]
gi|55730472|emb|CAH91958.1| hypothetical protein [Pongo abelii]
Length = 143
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 67/79 (84%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNI 112
LAFQISKEYERFSKYM N+
Sbjct: 125 LAFQISKEYERFSKYMPNV 143
>gi|223634713|sp|A5DDN0.3|SUB2_PICGU RecName: Full=ATP-dependent RNA helicase SUB2
Length = 432
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 68 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG+PI KD E LK + P IV
Sbjct: 128 LAYQIRNEYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIV 174
>gi|255087672|ref|XP_002505759.1| predicted protein [Micromonas sp. RCC299]
gi|226521029|gb|ACO67017.1| predicted protein [Micromonas sp. RCC299]
Length = 426
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 76/105 (72%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVLA LQQLE V L++CHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLAVLQQLEPVPGEVGALILCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ + V V FGG+ I++ + LK P I+
Sbjct: 125 LAYQIKHEFERFSAYLPAVNVAVIFGGVNIKQQKAELKEKPPSII 169
>gi|452846565|gb|EME48497.1| hypothetical protein DOTSEDRAFT_67510 [Dothistroma septosporum
NZE10]
Length = 461
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 82/121 (67%), Gaps = 6/121 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL+TLQQ+E VLVMCHTRE
Sbjct: 81 FEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLSTLQQIEPVAGEASVLVMCHTRE 140
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVGLVNYETNLSGV 150
LAFQI EY RFSKYM +K VF+GG I KD+ LK TH P I+ V L+G+
Sbjct: 141 LAFQIKNEYARFSKYMPEVKTAVFYGGTDINKDKALLKDKETH-PHII--VATPGRLNGL 197
Query: 151 V 151
V
Sbjct: 198 V 198
>gi|255553153|ref|XP_002517619.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223543251|gb|EEF44783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 427
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGM ++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMHVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK P +V
Sbjct: 126 LAYQICHEFERFSTYLPDLKVSVFYGGVNIKIHKDLLKNECPHVV 170
>gi|66826121|ref|XP_646415.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
gi|60474379|gb|EAL72316.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
Length = 428
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 80/105 (76%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q+ECIPQA+LG D++CQAKSGMGKTAVFVL+TLQQ++ + + LV+C+TRE
Sbjct: 68 FEHPSEVQNECIPQAILGTDVICQAKSGMGKTAVFVLSTLQQIDNNPNGITTLVLCNTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E++RF+KY+ N+K V +GG+P+Q ++ +K P I+
Sbjct: 128 LAYQICDEFDRFTKYLPNVKTAVIYGGIPVQTHKDLIKEKKPNII 172
>gi|295666101|ref|XP_002793601.1| ATP-dependent RNA helicase SUB2 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226277895|gb|EEH33461.1| ATP-dependent RNA helicase SUB2 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 467
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 96/145 (66%), Gaps = 12/145 (8%)
Query: 34 FREQ-TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92
FR++ SFQ CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTR
Sbjct: 180 FRDRFDSFQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTR 239
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVGLVNYETNLSGV 150
ELA+QI EY RFSKY+ ++K VF+GG P+QKD E L K + P IV V L+ +
Sbjct: 240 ELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDNYPNIV--VGTPGRLNAL 297
Query: 151 VVN-VMDVRSGGWWLDLEALILSKC 174
V + + +RS ++A +L +C
Sbjct: 298 VRDKKLSLRS------IKAFVLDEC 316
>gi|126135590|ref|XP_001384319.1| Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
[Scheffersomyces stipitis CBS 6054]
gi|146325738|sp|A3LST5.1|SUB2_PICST RecName: Full=ATP-dependent RNA helicase SUB2
gi|126091517|gb|ABN66290.1| Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
[Scheffersomyces stipitis CBS 6054]
Length = 433
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 69 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI++D E LK+ + P IV
Sbjct: 129 LAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKDTCPHIV 175
>gi|241953960|ref|XP_002419701.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
gi|223643042|emb|CAX41916.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 433
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 69 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI++D E LK + P IV
Sbjct: 129 LAYQIRNEYARFSKYMPDVKTDVFYGGTPIKRDIEKLKNKDTCPHIV 175
>gi|238881797|gb|EEQ45435.1| ATP-dependent RNA helicase SUB2 [Candida albicans WO-1]
Length = 433
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 69 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI++D E LK + P IV
Sbjct: 129 LAYQIRNEYARFSKYMPDVKTDVFYGGTPIKRDIEKLKNKDTCPHIV 175
>gi|398397223|ref|XP_003852069.1| hypothetical protein MYCGRDRAFT_104368 [Zymoseptoria tritici
IPO323]
gi|339471950|gb|EGP87045.1| hypothetical protein MYCGRDRAFT_104368 [Zymoseptoria tritici
IPO323]
Length = 457
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 80/108 (74%), Gaps = 4/108 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL+TLQQ+E + V VLV+CHTRE
Sbjct: 76 FEHPSEVQQNCIPQAILGTDVLCQAKSGLGKTAVFVLSTLQQMEPVNGEVSVLVLCHTRE 135
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIV 138
LAFQI EY RFSKYM +K VF+GG I+++E+ LK TH P I+
Sbjct: 136 LAFQIKNEYIRFSKYMPEVKTEVFYGGTDIKENEKLLKNKETH-PHII 182
>gi|147769174|emb|CAN76234.1| hypothetical protein VITISV_030204 [Vitis vinifera]
Length = 383
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%), Gaps = 4/105 (3%)
Query: 38 TSFQH----ECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ F+H +CIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTRE
Sbjct: 65 SGFEHPSEGKCIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IV
Sbjct: 125 LAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECPHIV 169
>gi|328873781|gb|EGG22147.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 426
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 76/105 (72%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q+ECIPQA+LG D++CQAKSGMGKTAVFVL+ LQQ++ S V LV+CHTRE
Sbjct: 65 FEHPSEVQNECIPQAILGHDVICQAKSGMGKTAVFVLSLLQQIDKNPSGVVALVLCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E++RF KYM +K V +GG+PI +E L+ P IV
Sbjct: 125 LAYQICDEFDRFVKYMPQVKTAVIYGGIPINTQKELLRDKQPNIV 169
>gi|354547682|emb|CCE44417.1| hypothetical protein CPAR2_402180 [Candida parapsilosis]
Length = 434
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 70 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI++D E LK + P IV
Sbjct: 130 LAYQIKNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKNKDTCPHIV 176
>gi|448529866|ref|XP_003869942.1| Sub2 TREX complex component [Candida orthopsilosis Co 90-125]
gi|380354296|emb|CCG23810.1| Sub2 TREX complex component [Candida orthopsilosis]
Length = 434
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 70 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI++D E LK + P IV
Sbjct: 130 LAYQIKNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKNKDTCPHIV 176
>gi|344300348|gb|EGW30669.1| hypothetical protein SPAPADRAFT_62538 [Spathaspora passalidarum
NRRL Y-27907]
Length = 439
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 75 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPIPGEISTLVICHTRE 134
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI++D E LK + P IV
Sbjct: 135 LAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKNKDTCPHIV 181
>gi|146419497|ref|XP_001485710.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 370
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI
Sbjct: 13 QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRN 72
Query: 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
EY RFSKYM ++K VF+GG+PI KD E LK + P IV
Sbjct: 73 EYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIV 112
>gi|190345404|gb|EDK37283.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 370
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI
Sbjct: 13 QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRN 72
Query: 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
EY RFSKYM ++K VF+GG+PI KD E LK + P IV
Sbjct: 73 EYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIV 112
>gi|294658297|ref|XP_460627.2| DEHA2F06138p [Debaryomyces hansenii CBS767]
gi|91208173|sp|Q6BME5.2|SUB2_DEBHA RecName: Full=ATP-dependent RNA helicase SUB2
gi|202953024|emb|CAG88955.2| DEHA2F06138p [Debaryomyces hansenii CBS767]
Length = 435
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI +D E LK + P IV
Sbjct: 131 LAYQIRNEYARFSKYMPDVKTEVFYGGTPITRDLEKLKNKDTCPHIV 177
>gi|149236910|ref|XP_001524332.1| ATP-dependent RNA helicase SUB2 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152112304|sp|A5E3W5.1|SUB2_LODEL RecName: Full=ATP-dependent RNA helicase SUB2
gi|146451867|gb|EDK46123.1| ATP-dependent RNA helicase SUB2 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 433
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 69 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG P+++D E LK + P IV
Sbjct: 129 LAYQIRNEYARFSKYMPDVKTEVFYGGTPVKRDIEKLKNKDTCPHIV 175
>gi|254565085|ref|XP_002489653.1| Component of the TREX complex required for nuclear mRNA export
[Komagataella pastoris GS115]
gi|238029449|emb|CAY67372.1| Component of the TREX complex required for nuclear mRNA export
[Komagataella pastoris GS115]
gi|328350072|emb|CCA36472.1| ATP-dependent RNA helicase UAP56/SUB2 [Komagataella pastoris CBS
7435]
Length = 436
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 88/130 (67%), Gaps = 4/130 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + V VLV+C+TRE
Sbjct: 71 FEHPSEVQQVCIPQSILGNDVLCQAKSGLGKTAVFVLSTLQQLDPSPGEVSVLVICNTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVGLVNYETN--LSG 149
LA+QI EY RFSKYM +K VF+GG I KDEE LK + P IV N +
Sbjct: 131 LAYQIKNEYARFSKYMPEVKTEVFYGGTQIAKDEEILKNKDTCPHIVVATPGRLNALVRD 190
Query: 150 VVVNVMDVRS 159
V+NV +V++
Sbjct: 191 KVMNVKNVKN 200
>gi|169778873|ref|XP_001823901.1| ATP-dependent RNA helicase sub2 [Aspergillus oryzae RIB40]
gi|238499455|ref|XP_002380962.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus flavus
NRRL3357]
gi|91208172|sp|Q2U6P7.1|SUB2_ASPOR RecName: Full=ATP-dependent RNA helicase sub2
gi|83772640|dbj|BAE62768.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692715|gb|EED49061.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus flavus
NRRL3357]
Length = 441
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIV 184
>gi|121704012|ref|XP_001270270.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus clavatus
NRRL 1]
gi|143586067|sp|A1CMQ7.1|SUB2_ASPCL RecName: Full=ATP-dependent RNA helicase sub2
gi|119398414|gb|EAW08844.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus clavatus
NRRL 1]
Length = 441
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIV 184
>gi|296413310|ref|XP_002836357.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630174|emb|CAZ80548.1| unnamed protein product [Tuber melanosporum]
Length = 443
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL TLQQ++ VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLTTLQQVDPVPGEASVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++ VF+GG P+Q D + LK + P I+
Sbjct: 139 LAYQIKNEYARFSKYMPEVRTAVFYGGTPMQNDVQVLKNKDQHPHII 185
>gi|358371078|dbj|GAA87687.1| ATP dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 440
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 77 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 137 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIV 183
>gi|119467294|ref|XP_001257453.1| ATP dependent RNA helicase (Sub2), putative [Neosartorya fischeri
NRRL 181]
gi|143586096|sp|A1DL85.1|SUB2_NEOFI RecName: Full=ATP-dependent RNA helicase sub2
gi|119405605|gb|EAW15556.1| ATP dependent RNA helicase (Sub2), putative [Neosartorya fischeri
NRRL 181]
Length = 441
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIV 184
>gi|350637145|gb|EHA25503.1| hypothetical protein ASPNIDRAFT_56669 [Aspergillus niger ATCC 1015]
Length = 444
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 77 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 137 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIV 183
>gi|145247210|ref|XP_001395854.1| ATP-dependent RNA helicase sub2 [Aspergillus niger CBS 513.88]
gi|143586076|sp|A2R0B5.1|SUB2_ASPNC RecName: Full=ATP-dependent RNA helicase sub2
gi|134080586|emb|CAK41253.1| unnamed protein product [Aspergillus niger]
Length = 440
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 77 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 137 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIV 183
>gi|70984615|ref|XP_747814.1| ATP dependent RNA helicase (Sub2) [Aspergillus fumigatus Af293]
gi|74667372|sp|Q4WCW2.1|SUB2_ASPFU RecName: Full=ATP-dependent RNA helicase sub2
gi|66845441|gb|EAL85776.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus fumigatus
Af293]
gi|159122596|gb|EDP47717.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus fumigatus
A1163]
Length = 448
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIV 184
>gi|448099687|ref|XP_004199205.1| Piso0_002620 [Millerozyma farinosa CBS 7064]
gi|359380627|emb|CCE82868.1| Piso0_002620 [Millerozyma farinosa CBS 7064]
Length = 435
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + +V+CHTRE
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTVVICHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI +D E LK + P I+
Sbjct: 131 LAYQIRNEYARFSKYMPDVKTEVFYGGTPIARDVEKLKNKDTCPHII 177
>gi|412985431|emb|CCO18877.1| ATP-dependent RNA helicase DDX39 [Bathycoccus prasinos]
Length = 429
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 76/105 (72%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFV+ LQQL+ + V +++CHTRE
Sbjct: 68 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVITVLQQLDPSPGEVGAVIICHTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QIS E RFS +M N+K V +GG+ I+ E LK + P ++
Sbjct: 128 LAYQISHEMTRFSAHMPNVKCAVIYGGVNIKTQREELKANMPNVI 172
>gi|67903470|ref|XP_681991.1| hypothetical protein AN8722.2 [Aspergillus nidulans FGSC A4]
gi|40741081|gb|EAA60271.1| hypothetical protein AN8722.2 [Aspergillus nidulans FGSC A4]
Length = 451
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L + P I+
Sbjct: 139 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNII 185
>gi|448103531|ref|XP_004200058.1| Piso0_002620 [Millerozyma farinosa CBS 7064]
gi|359381480|emb|CCE81939.1| Piso0_002620 [Millerozyma farinosa CBS 7064]
Length = 435
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + +V+CHTRE
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTVVICHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI +D E LK + P I+
Sbjct: 131 LAYQIRNEYARFSKYMPDVKTEVFYGGTPIARDVEKLKNKDTCPHII 177
>gi|225683798|gb|EEH22082.1| ATP-dependent RNA helicase sub2 [Paracoccidioides brasiliensis
Pb03]
gi|226293173|gb|EEH48593.1| ATP-dependent RNA helicase SUB2 [Paracoccidioides brasiliensis
Pb18]
Length = 457
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 92/144 (63%), Gaps = 11/144 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 80 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE 139
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVGLVNYETNLSGVV 151
LA+QI EY RFSKY+ ++K VF+GG P+QKD E L K + P IV V L+ +V
Sbjct: 140 LAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDNYPNIV--VGTPGRLNALV 197
Query: 152 VN-VMDVRSGGWWLDLEALILSKC 174
+ + +RS ++A +L +C
Sbjct: 198 RDKKLSLRS------IKAFVLDEC 215
>gi|357529057|sp|Q5ASK8.2|SUB2_EMENI RecName: Full=ATP-dependent RNA helicase sub2
Length = 434
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L + P I+
Sbjct: 139 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNII 185
>gi|259483083|tpe|CBF78163.1| TPA: ATP-dependent RNA helicase sub2 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5ASK8] [Aspergillus
nidulans FGSC A4]
Length = 369
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L + P I+
Sbjct: 139 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNII 185
>gi|425771595|gb|EKV10033.1| ATP-dependent RNA helicase SUB2 [Penicillium digitatum Pd1]
gi|425777099|gb|EKV15289.1| ATP-dependent RNA helicase SUB2 [Penicillium digitatum PHI26]
Length = 442
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP ++L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPTSILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECQILVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K +P IV
Sbjct: 139 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEILSNKETHPNIV 185
>gi|302836427|ref|XP_002949774.1| hypothetical protein VOLCADRAFT_80795 [Volvox carteri f.
nagariensis]
gi|300265133|gb|EFJ49326.1| hypothetical protein VOLCADRAFT_80795 [Volvox carteri f.
nagariensis]
Length = 435
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 76/105 (72%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIP A+LG D+LCQAKSGMGKTAVFVL+ LQQL+ + + +++CHTRE
Sbjct: 60 FEHPSEVQHECIPHAILGNDVLCQAKSGMGKTAVFVLSILQQLDPKPNECHAIILCHTRE 119
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI E+ RFS M + +G F+GG+P+ +++E LK P IV
Sbjct: 120 LAFQICHEFTRFSARMKGVTIGNFYGGIPVTQNKETLKKSVPNIV 164
>gi|255951046|ref|XP_002566290.1| Pc22g24000 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593307|emb|CAP99688.1| Pc22g24000 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 442
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP ++L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPTSILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECQILVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K +P IV
Sbjct: 139 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEILSNKETHPNIV 185
>gi|261189163|ref|XP_002620993.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis SLH14081]
gi|239591778|gb|EEQ74359.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis SLH14081]
gi|239614696|gb|EEQ91683.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis ER-3]
gi|327354159|gb|EGE83016.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis ATCC
18188]
Length = 443
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 80 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE 139
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG P+QKD E L + + P IV
Sbjct: 140 LAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPNIV 186
>gi|210075100|ref|XP_499972.2| YALI0A11157p [Yarrowia lipolytica]
gi|218551749|sp|Q6CH90.2|SUB2_YARLI RecName: Full=ATP-dependent RNA helicase SUB2
gi|199424876|emb|CAG83901.2| YALI0A11157p [Yarrowia lipolytica CLIB122]
Length = 441
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAK+G+GKTAVFVL+TLQQLE V+V+CHTRE
Sbjct: 77 FEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E + K +P ++
Sbjct: 137 LAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHVI 183
>gi|160358722|sp|A6R603.2|SUB2_AJECN RecName: Full=ATP-dependent RNA helicase SUB2
Length = 442
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG P+QKD E L + + P IV
Sbjct: 139 LAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIV 185
>gi|320583137|gb|EFW97353.1| ATP-dependent RNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 421
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 77/102 (75%), Gaps = 2/102 (1%)
Query: 39 SFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98
S Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ T + +V+CHTRELA+QI
Sbjct: 62 SVQQACIPQSILGNDVLCQAKSGLGKTAVFVLSTLQQLDPTPGEISTVVICHTRELAYQI 121
Query: 99 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
EY RFSKYM +K VF+GG+ I++D E LK + P IV
Sbjct: 122 KNEYARFSKYMPEVKTEVFYGGVNIKQDAEKLKNKDTCPHIV 163
>gi|159491657|ref|XP_001703776.1| subunit of exon junction complex [Chlamydomonas reinhardtii]
gi|158270457|gb|EDO96302.1| subunit of exon junction complex [Chlamydomonas reinhardtii]
Length = 435
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 76/105 (72%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIP A+LG D+LCQAKSGMGKTAVFVL+ LQQL+ + + +++CHTRE
Sbjct: 60 FEHPSEVQHECIPHAILGNDVLCQAKSGMGKTAVFVLSILQQLDPKANECHAIILCHTRE 119
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI E+ RFS M + +G F+GG+P+ +++E LK P IV
Sbjct: 120 LAFQICHEFTRFSARMKGVTIGNFYGGIPVTQNKETLKKAVPNIV 164
>gi|348688601|gb|EGZ28415.1| hypothetical protein PHYSODRAFT_309277 [Phytophthora sojae]
Length = 425
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 72/87 (82%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MDI+CQAKSGMGKTAVFVLATL Q+E D + V+VMCHTRELAFQI+ EYERFSKY+ +
Sbjct: 1 MDIICQAKSGMGKTAVFVLATLHQIEPVDGQISVVVMCHTRELAFQIAHEYERFSKYLVD 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+K GVF+GG+PI ++ E LK + P I+
Sbjct: 61 VKTGVFYGGVPISQNREALKNNPPHIL 87
>gi|344228996|gb|EGV60882.1| hypothetical protein CANTEDRAFT_128604 [Candida tenuis ATCC 10573]
Length = 431
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ V LV+CHTRE
Sbjct: 67 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSTLVVCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +++ VF+GG PI KD LK P IV
Sbjct: 127 LAYQIRNEYARFSKYMPDVRTEVFYGGTPINKDVAKLKDKETCPHIV 173
>gi|344228997|gb|EGV60883.1| ATP-dependent RNA helicase SUB2 [Candida tenuis ATCC 10573]
Length = 431
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ V LV+CHTRE
Sbjct: 67 FEHPSKVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSTLVVCHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +++ VF+GG PI KD LK P IV
Sbjct: 127 LAYQIRNEYARFSKYMPDVRTEVFYGGTPINKDVAKLKDKETCPHIV 173
>gi|119173036|ref|XP_001239034.1| hypothetical protein CIMG_10056 [Coccidioides immitis RS]
gi|303324075|ref|XP_003072025.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|118577977|sp|Q1DI07.1|SUB2_COCIM RecName: Full=ATP-dependent RNA helicase SUB2
gi|240111735|gb|EER29880.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|392869242|gb|EAS27144.2| ATP-dependent RNA helicase SUB2 [Coccidioides immitis RS]
Length = 443
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 80 FEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRE 139
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG P+QKD E L + + P IV
Sbjct: 140 LAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIV 186
>gi|320036991|gb|EFW18929.1| ATP-dependent RNA helicase SUB2 [Coccidioides posadasii str.
Silveira]
Length = 443
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 80 FEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRE 139
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG P+QKD E L + + P IV
Sbjct: 140 LAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIV 186
>gi|346976312|gb|EGY19764.1| ATP-dependent RNA helicase SUB2 [Verticillium dahliae VdLs.17]
Length = 513
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 85/127 (66%), Gaps = 4/127 (3%)
Query: 14 KVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 73
+V SSR R + G SQ + + + A+LG DI+CQAKSG+GKTAVFVL TL
Sbjct: 131 RVESSRRTRHADSHAGLSQVGCAEAA--NVLCDLALLGGDIICQAKSGLGKTAVFVLTTL 188
Query: 74 QQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH 133
QQ+E V VLVMCHTRELAFQI EY RFSKYM +IK GVF+GG PIQKD E +K
Sbjct: 189 QQVEPVAGEVSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNK 248
Query: 134 N--PQIV 138
+ P I+
Sbjct: 249 DTCPHII 255
>gi|302500115|ref|XP_003012052.1| hypothetical protein ARB_01808 [Arthroderma benhamiae CBS 112371]
gi|291175607|gb|EFE31412.1| hypothetical protein ARB_01808 [Arthroderma benhamiae CBS 112371]
Length = 620
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 39 SFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98
+FQ CIP A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI
Sbjct: 262 AFQQVCIPTAILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRELAYQI 321
Query: 99 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
EY RFSKYM ++K VF+GG PIQKD E L TH IVG
Sbjct: 322 KDEYARFSKYMPDVKTAVFYGGTPIQKDIEILSSKDTHPNIIVG 365
>gi|302661414|ref|XP_003022375.1| hypothetical protein TRV_03502 [Trichophyton verrucosum HKI 0517]
gi|291186317|gb|EFE41757.1| hypothetical protein TRV_03502 [Trichophyton verrucosum HKI 0517]
Length = 541
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 74/104 (71%), Gaps = 3/104 (2%)
Query: 39 SFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98
+FQ CIP A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI
Sbjct: 183 AFQQVCIPTAILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRELAYQI 242
Query: 99 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNPQIVG 139
EY RFSKYM ++K VF+GG PIQKD E L +TH IVG
Sbjct: 243 KDEYARFSKYMPDVKTAVFYGGTPIQKDIEILSSKETHPNIIVG 286
>gi|115386676|ref|XP_001209879.1| ATP-dependent RNA helicase SUB2 [Aspergillus terreus NIH2624]
gi|121736209|sp|Q0CGJ9.1|SUB2_ASPTN RecName: Full=ATP-dependent RNA helicase sub2
gi|114190877|gb|EAU32577.1| ATP-dependent RNA helicase SUB2 [Aspergillus terreus NIH2624]
Length = 438
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 74/104 (71%), Gaps = 5/104 (4%)
Query: 40 FQHE---CIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 96
F+H CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+
Sbjct: 78 FEHPSEVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAY 137
Query: 97 QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 QIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIV 181
>gi|291001111|ref|XP_002683122.1| predicted protein [Naegleria gruberi]
gi|284096751|gb|EFC50378.1| predicted protein [Naegleria gruberi]
Length = 441
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 77/105 (73%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA++G D+LCQAKSGMGKTAVFV++ LQQLET + +++CH RE
Sbjct: 66 FEHPSEVQHECIPQAMIGSDVLCQAKSGMGKTAVFVISVLQQLETIEPKTMCVILCHARE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI +E+ RFSKY+ +++V F GG+ I+ E LK+ P +V
Sbjct: 126 LAYQICQEFNRFSKYLPDVRVKSFIGGINIKTHIEQLKSETPHVV 170
>gi|315053519|ref|XP_003176133.1| ATP-dependent RNA helicase SUB2 [Arthroderma gypseum CBS 118893]
gi|311337979|gb|EFQ97181.1| ATP-dependent RNA helicase SUB2 [Arthroderma gypseum CBS 118893]
Length = 441
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 74/109 (67%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNPQIVG 139
LA+QI EY RFSKYM ++K VF+GG PIQKD E L +TH IVG
Sbjct: 138 LAYQIKDEYARFSKYMPDVKTAVFYGGTPIQKDIEILSSKETHPNIIVG 186
>gi|449298576|gb|EMC94591.1| hypothetical protein BAUCODRAFT_35821 [Baudoinia compniacensis UAMH
10762]
Length = 455
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA++G D+LCQAKSG+GKTAVFV++TLQQ++ VLVMCHTRE
Sbjct: 77 FEHPSEVQQVCIPQAIVGTDVLCQAKSGLGKTAVFVISTLQQIDVVPGEASVLVMCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LAFQI EY RF+KYM ++K VF+GG I+++E+ L + P I+
Sbjct: 137 LAFQIKNEYNRFTKYMPDVKTAVFYGGTDIKENEKLLSSKETYPNII 183
>gi|225561088|gb|EEH09369.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus G186AR]
gi|240280352|gb|EER43856.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus H143]
gi|325096576|gb|EGC49886.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus H88]
Length = 477
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI
Sbjct: 121 QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKN 180
Query: 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
EY RFSKY+ ++K VF+GG P+QKD E L + + P IV
Sbjct: 181 EYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIV 220
>gi|258569076|ref|XP_002585282.1| ATP-dependent RNA helicase SUB2 [Uncinocarpus reesii 1704]
gi|237906728|gb|EEP81129.1| ATP-dependent RNA helicase SUB2 [Uncinocarpus reesii 1704]
Length = 564
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 74/102 (72%), Gaps = 2/102 (1%)
Query: 39 SFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98
+ Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI
Sbjct: 206 TVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQI 265
Query: 99 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
EY RFSKY+ ++K VF+GG P+QKD E L + + P IV
Sbjct: 266 KNEYARFSKYLPDVKTAVFYGGTPMQKDIETLSSKDTYPNIV 307
>gi|327309270|ref|XP_003239326.1| ATP-dependent RNA helicase SUB2 [Trichophyton rubrum CBS 118892]
gi|326459582|gb|EGD85035.1| ATP-dependent RNA helicase SUB2 [Trichophyton rubrum CBS 118892]
Length = 441
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNPQIVG 139
LA+QI EY RFSKYM ++K VF+GG PIQKD E L TH IVG
Sbjct: 138 LAYQIKDEYARFSKYMPDVKTAVFYGGTPIQKDIEILSSKDTHPNIIVG 186
>gi|300176015|emb|CBK22232.2| unnamed protein product [Blastocystis hominis]
Length = 426
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN--VYVLVMCHT 91
F + QH CIP+A+ D+LCQAKSGMGKTAVFV++TLQ L+ N + VLV+ HT
Sbjct: 66 FEHPSEVQHACIPRAITNKDVLCQAKSGMGKTAVFVISTLQMLKDDPENQDIQVLVIAHT 125
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
RELAFQI EY+RF+K+M N++ VFFGG IQ D E L TH +VG
Sbjct: 126 RELAFQIQNEYKRFTKFMPNVRTEVFFGGRNIQADREALNTHPAIVVG 173
>gi|452003765|gb|EMD96222.1| hypothetical protein COCHEDRAFT_1167233 [Cochliobolus
heterostrophus C5]
Length = 438
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 79/111 (71%), Gaps = 5/111 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN--VYVLVMCHT 91
F + Q IPQA+LG D+LCQAKSG+GKTAVFVLATLQQ++ +LVMCHT
Sbjct: 72 FEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVATILVMCHT 131
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNPQIVG 139
RELA+QI EY RF+K++ ++KVGVF+GG P+QKD E L TH IVG
Sbjct: 132 RELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVQKDIELLSNKDTHPHIIVG 182
>gi|451855761|gb|EMD69052.1| hypothetical protein COCSADRAFT_31829 [Cochliobolus sativus ND90Pr]
Length = 438
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 79/111 (71%), Gaps = 5/111 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN--VYVLVMCHT 91
F + Q IPQA+LG D+LCQAKSG+GKTAVFVLATLQQ++ +LVMCHT
Sbjct: 72 FEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVATILVMCHT 131
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNPQIVG 139
RELA+QI EY RF+K++ ++KVGVF+GG P+QKD E L TH IVG
Sbjct: 132 RELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVQKDIELLSNKDTHPHIIVG 182
>gi|406605046|emb|CCH43517.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 425
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 5/104 (4%)
Query: 40 FQHE---CIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 96
F+H CIPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V LV+CHTRELA+
Sbjct: 64 FEHPSEVCIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSTLVICHTRELAY 123
Query: 97 QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
QI EY RFSKYM ++K VF+GG I+KD E LK + P IV
Sbjct: 124 QIRNEYLRFSKYMPDVKTAVFYGGTDIKKDAELLKNKDTAPHIV 167
>gi|209881121|ref|XP_002141999.1| ATP-dependent RNA helicae DDX39 [Cryptosporidium muris RN66]
gi|209557605|gb|EEA07650.1| ATP-dependent RNA helicae DDX39, putative [Cryptosporidium muris
RN66]
Length = 427
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HT 91
F + QHE IP A+ G+DILCQAKSGMGKTAVFVL+ LQQL +++ V +C HT
Sbjct: 64 FEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLNPDENSKSVECLCIGHT 123
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
RELAFQ+ E++RFSKY+ NIK V +GG+PIQKD E L ++ P I+
Sbjct: 124 RELAFQVKNEFDRFSKYLKNIKTQVVYGGIPIQKDIELLSSNVPNIL 170
>gi|330906893|ref|XP_003295639.1| hypothetical protein PTT_01995 [Pyrenophora teres f. teres 0-1]
gi|311332936|gb|EFQ96278.1| hypothetical protein PTT_01995 [Pyrenophora teres f. teres 0-1]
Length = 438
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 79/109 (72%), Gaps = 4/109 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN--VYVLVMCHT 91
F + Q IPQA+LG D+LCQAKSG+GKTAVFVLATLQQ++ +LVMCHT
Sbjct: 72 FEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGAATILVMCHT 131
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
RELA+QI EY RF+K++ +++VGVF+GG P+QKD E L K +P I+
Sbjct: 132 RELAYQIRNEYNRFAKFLPDVRVGVFYGGTPVQKDIELLSNKDTHPHII 180
>gi|440791920|gb|ELR13155.1| BAT1 protein [Acanthamoeba castellanii str. Neff]
Length = 464
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q E IPQA+LG D++CQA SGMGKTAVFVL+ LQQ+ D L++ HTRE
Sbjct: 68 FEHPSQVQFEVIPQAILGTDVICQANSGMGKTAVFVLSVLQQISAEDGT-SCLILAHTRE 126
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QIS E+ RF+KYM NIK VFFGGLPI +D LK P IV
Sbjct: 127 LAYQISHEFGRFTKYMPNIKASVFFGGLPIVQDRATLKKDPPHIV 171
>gi|154277506|ref|XP_001539594.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus NAm1]
gi|150413179|gb|EDN08562.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus NAm1]
Length = 484
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 72/97 (74%), Gaps = 2/97 (2%)
Query: 44 CIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103
CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY
Sbjct: 131 CIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYA 190
Query: 104 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
RFSKY+ ++K VF+GG P+QKD E L + + P IV
Sbjct: 191 RFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIV 227
>gi|403358218|gb|EJY78746.1| ATP-dependent RNA helicase DDX39 [Oxytricha trifallax]
Length = 432
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 74/105 (70%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA +G+DILCQAKSGMGKTAVFVL TL QL+ + VLV+CHTRE
Sbjct: 71 FEHPSEVQQECIPQASMGVDILCQAKSGMGKTAVFVLTTLHQLDQEPKPLTVLVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA QI KEY+RF+KY+ + V +GG PIQ ++ L+ P I+
Sbjct: 131 LAHQIKKEYDRFTKYLDKVSCEVIYGGQPIQTHQKLLQDKPPTII 175
>gi|365986805|ref|XP_003670234.1| hypothetical protein NDAI_0E01750 [Naumovozyma dairenensis CBS 421]
gi|343769004|emb|CCD24991.1| hypothetical protein NDAI_0E01750 [Naumovozyma dairenensis CBS 421]
Length = 450
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 86 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARE 145
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK + P IV
Sbjct: 146 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKDTAPHIV 192
>gi|452825333|gb|EME32330.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 442
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 75/105 (71%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q +CIPQA+LG DI+CQAKSGMGKTAVF LA L QL D V +V+ HTRE
Sbjct: 71 FEHPSEVQEQCIPQAILGGDIVCQAKSGMGKTAVFALAVLHQLVPEDGKVSCVVLGHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI+ E+ERFSKY+ N++ V +GG+PI++ + LK P IV
Sbjct: 131 LAYQIAHEFERFSKYLPNVRTAVLYGGVPIKQHIDRLKQSPPHIV 175
>gi|242809318|ref|XP_002485344.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
ATCC 10500]
gi|218715969|gb|EED15391.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
ATCC 10500]
Length = 444
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 73/107 (68%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ +L D+LCQAKSG+GKTAVFVL TL L+ + V VLVMCHTRE
Sbjct: 81 FEHPSEVQQVCIPQGMLHSDLLCQAKSGLGKTAVFVLTTLHGLDPVEGEVQVLVMCHTRE 140
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ +K VF+GG P+QKD E L K P IV
Sbjct: 141 LAYQIKNEYARFSKYLPQVKTAVFYGGTPMQKDIEILSNKETRPNIV 187
>gi|365761668|gb|EHN03306.1| Sub2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840144|gb|EJT43052.1| SUB2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 446
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 82 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARE 141
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK + P IV
Sbjct: 142 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188
>gi|401626423|gb|EJS44370.1| sub2p [Saccharomyces arboricola H-6]
Length = 446
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 82 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARE 141
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK + P IV
Sbjct: 142 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188
>gi|259145161|emb|CAY78425.1| Sub2p [Saccharomyces cerevisiae EC1118]
Length = 446
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 82 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARE 141
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK + P IV
Sbjct: 142 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188
>gi|6320119|ref|NP_010199.1| Sub2p [Saccharomyces cerevisiae S288c]
gi|2500534|sp|Q07478.1|SUB2_YEAST RecName: Full=ATP-dependent RNA helicase SUB2; AltName:
Full=Suppressor of BRR1 protein 2
gi|1431108|emb|CAA98650.1| SUB2 [Saccharomyces cerevisiae]
gi|51013265|gb|AAT92926.1| YDL084W [Saccharomyces cerevisiae]
gi|285810951|tpg|DAA11775.1| TPA: Sub2p [Saccharomyces cerevisiae S288c]
gi|349576996|dbj|GAA22165.1| K7_Sub2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300033|gb|EIW11124.1| Sub2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 446
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 82 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARE 141
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK + P IV
Sbjct: 142 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188
>gi|160358710|sp|A6ZXP4.1|SUB2_YEAS7 RecName: Full=ATP-dependent RNA helicase SUB2; AltName:
Full=Suppressor of BRR1 protein 2
gi|151941918|gb|EDN60274.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
gi|190405090|gb|EDV08357.1| ATP-dependent RNA helicase SUB2 [Saccharomyces cerevisiae RM11-1a]
gi|207346988|gb|EDZ73314.1| YDL084Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274096|gb|EEU09007.1| Sub2p [Saccharomyces cerevisiae JAY291]
gi|323305707|gb|EGA59447.1| Sub2p [Saccharomyces cerevisiae FostersB]
gi|323309539|gb|EGA62749.1| Sub2p [Saccharomyces cerevisiae FostersO]
gi|323334342|gb|EGA75723.1| Sub2p [Saccharomyces cerevisiae AWRI796]
gi|323349458|gb|EGA83682.1| Sub2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355848|gb|EGA87661.1| Sub2p [Saccharomyces cerevisiae VL3]
gi|365766459|gb|EHN07955.1| Sub2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 446
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 82 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARE 141
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK + P IV
Sbjct: 142 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188
>gi|169624724|ref|XP_001805767.1| hypothetical protein SNOG_15623 [Phaeosphaeria nodorum SN15]
gi|118577978|sp|Q0TXZ2.1|SUB2_PHANO RecName: Full=ATP-dependent RNA helicase SUB2
gi|111055878|gb|EAT76998.1| hypothetical protein SNOG_15623 [Phaeosphaeria nodorum SN15]
Length = 438
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 80/111 (72%), Gaps = 5/111 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL-ETTDSNVY-VLVMCHT 91
F + Q IPQA+LG D+LCQAKSG+GKTAVFVLATLQQ+ E + V +LVMCHT
Sbjct: 72 FEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHT 131
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNPQIVG 139
RELA+QI EY RF+K++ ++KVGVF+GG P+ KD E L TH IVG
Sbjct: 132 RELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHIIVG 182
>gi|326483516|gb|EGE07526.1| ATP-dependent RNA helicase SUB2 [Trichophyton equinum CBS 127.97]
Length = 396
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 70/99 (70%), Gaps = 3/99 (3%)
Query: 44 CIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103
CIP A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI EY
Sbjct: 43 CIPTAILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRELAYQIKDEYA 102
Query: 104 RFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNPQIVG 139
RFSKYM ++K VF+GG PIQKD E L TH IVG
Sbjct: 103 RFSKYMPDVKTAVFYGGTPIQKDIEILSSKDTHPNIIVG 141
>gi|156843532|ref|XP_001644833.1| hypothetical protein Kpol_1041p33 [Vanderwaltozyma polyspora DSM
70294]
gi|160358707|sp|A7TLA0.1|SUB21_VANPO RecName: Full=ATP-dependent RNA helicase SUB2-1
gi|156115484|gb|EDO16975.1| hypothetical protein Kpol_1041p33 [Vanderwaltozyma polyspora DSM
70294]
Length = 441
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 77 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK P IV
Sbjct: 137 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKETAPHIV 183
>gi|403213746|emb|CCK68248.1| hypothetical protein KNAG_0A05850 [Kazachstania naganishii CBS
8797]
Length = 449
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 85 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPIPGEVSVVVICNARE 144
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH--NPQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK +P IV
Sbjct: 145 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKETSPHIV 191
>gi|367016787|ref|XP_003682892.1| hypothetical protein TDEL_0G03140 [Torulaspora delbrueckii]
gi|359750555|emb|CCE93681.1| hypothetical protein TDEL_0G03140 [Torulaspora delbrueckii]
Length = 444
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 80 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 139
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK P IV
Sbjct: 140 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPIAKDAELLKNKETAPHIV 186
>gi|255720512|ref|XP_002556536.1| KLTH0H15686p [Lachancea thermotolerans]
gi|238942502|emb|CAR30674.1| KLTH0H15686p [Lachancea thermotolerans CBS 6340]
Length = 439
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 75 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 134
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK P IV
Sbjct: 135 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIV 181
>gi|156844624|ref|XP_001645374.1| hypothetical protein Kpol_1058p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160358708|sp|A7TJT7.1|SUB22_VANPO RecName: Full=ATP-dependent RNA helicase SUB2-2
gi|156116035|gb|EDO17516.1| hypothetical protein Kpol_1058p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 442
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 78 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK P IV
Sbjct: 138 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIV 184
>gi|50293331|ref|XP_449077.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690687|sp|Q6FL17.1|SUB2_CANGA RecName: Full=ATP-dependent RNA helicase SUB2
gi|49528390|emb|CAG62047.1| unnamed protein product [Candida glabrata]
Length = 439
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 75 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 134
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +++ VF+GG PI KD E LK + P IV
Sbjct: 135 LAYQIRNEYLRFSKYMPDVRTAVFYGGTPIAKDAELLKNKDTAPHIV 181
>gi|296814418|ref|XP_002847546.1| ATP-dependent RNA helicase sub2 [Arthroderma otae CBS 113480]
gi|238840571|gb|EEQ30233.1| ATP-dependent RNA helicase sub2 [Arthroderma otae CBS 113480]
Length = 561
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Query: 44 CIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103
CIP A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI EY
Sbjct: 208 CIPTAILNVDVLCQAKSGLGKTAVFALTTLHQLEPVAGTCSILVMCPTRELAYQIKDEYA 267
Query: 104 RFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNPQIVG 139
RFSKYM ++K VF+GG PIQKD E L +TH IVG
Sbjct: 268 RFSKYMPDVKTAVFYGGTPIQKDIEILSSKETHPNIIVG 306
>gi|189198808|ref|XP_001935741.1| ATP-dependent RNA helicase SUB2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187982840|gb|EDU48328.1| ATP-dependent RNA helicase SUB2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 471
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 75/98 (76%), Gaps = 4/98 (4%)
Query: 45 IPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN--VYVLVMCHTRELAFQISKEY 102
IPQA+LG D+LCQAKSG+GKTAVFVLATLQQ++ +LVMCHTRELA+QI EY
Sbjct: 116 IPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEAGAATILVMCHTRELAYQIRNEY 175
Query: 103 ERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
RF+K++ ++VGVF+GG P+QKD E L K +P I+
Sbjct: 176 NRFAKFLPEVRVGVFYGGTPVQKDIELLSNKDSHPHII 213
>gi|66361130|ref|XP_627282.1| Sub2p like superfamily II helicase involved in snRNP biogenesis
[Cryptosporidium parvum Iowa II]
gi|46228851|gb|EAK89721.1| Sub2p like superfamily II helicase involved in snRNP biogenesis
[Cryptosporidium parvum Iowa II]
Length = 430
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HT 91
F + QHE IP A+ G+DILCQAKSGMGKTAVFVL+ LQQL + + V +C HT
Sbjct: 67 FEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLNPDEESKNVECICIGHT 126
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
RELAFQ+ E++RFSKY+ N+K V +GG+PIQKD + L P I+
Sbjct: 127 RELAFQVKNEFDRFSKYLKNVKPQVVYGGIPIQKDIDMLSNSTPNIL 173
>gi|67623541|ref|XP_668053.1| helicase [Cryptosporidium hominis TU502]
gi|54659242|gb|EAL37829.1| helicase [Cryptosporidium hominis]
gi|323509341|dbj|BAJ77563.1| cgd8_3900 [Cryptosporidium parvum]
gi|323510329|dbj|BAJ78058.1| cgd8_3900 [Cryptosporidium parvum]
Length = 427
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HT 91
F + QHE IP A+ G+DILCQAKSGMGKTAVFVL+ LQQL + + V +C HT
Sbjct: 64 FEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLNPDEESKNVECICIGHT 123
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
RELAFQ+ E++RFSKY+ N+K V +GG+PIQKD + L P I+
Sbjct: 124 RELAFQVKNEFDRFSKYLKNVKPQVVYGGIPIQKDIDMLSNSTPNIL 170
>gi|254577481|ref|XP_002494727.1| ZYRO0A08272p [Zygosaccharomyces rouxii]
gi|238937616|emb|CAR25794.1| ZYRO0A08272p [Zygosaccharomyces rouxii]
Length = 443
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 79 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD + LK P IV
Sbjct: 139 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDADLLKNKETAPHIV 185
>gi|444317132|ref|XP_004179223.1| hypothetical protein TBLA_0B08880 [Tetrapisispora blattae CBS 6284]
gi|387512263|emb|CCH59704.1| hypothetical protein TBLA_0B08880 [Tetrapisispora blattae CBS 6284]
Length = 442
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL++LQQL+ V+V+C+ RE
Sbjct: 78 FEHPSEVQQSTIPQSIHGTDVLCQAKSGLGKTAVFVLSSLQQLDPVPGEASVVVICNARE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK + P IV
Sbjct: 138 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKDTAPHIV 184
>gi|367003483|ref|XP_003686475.1| hypothetical protein TPHA_0G02050 [Tetrapisispora phaffii CBS 4417]
gi|357524776|emb|CCE64041.1| hypothetical protein TPHA_0G02050 [Tetrapisispora phaffii CBS 4417]
Length = 438
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 74 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +K VF+GG PI+ D + LK PQI+
Sbjct: 134 LAYQIRNEYLRFSKYMPEVKTAVFYGGTPIKNDADLLKNKETAPQII 180
>gi|402073041|gb|EJT68685.1| hypothetical protein GGTG_13748, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 406
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 89/144 (61%), Gaps = 11/144 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQAV+G DI+CQA SG+GKTAVFVL+TLQQ E S LV+CHT E
Sbjct: 81 FEHASEVQRICIPQAVIGKDIICQASSGLGKTAVFVLSTLQQAEPIASICSALVLCHTCE 140
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVGLVNYETNLSGVV 151
LA QI EY+RFSK+M +I + VFFGG P KD + L K+ +P I+ + G +
Sbjct: 141 LALQIYTEYKRFSKHMPDINIAVFFGGRPFYKDTDLLQNKSTHPHII------ISTPGRL 194
Query: 152 VNVMDVRSGGWWLD-LEALILSKC 174
+M R G LD L L+L +C
Sbjct: 195 KALM--RWGNLRLDGLRTLVLDEC 216
>gi|367003589|ref|XP_003686528.1| hypothetical protein TPHA_0G02585 [Tetrapisispora phaffii CBS 4417]
gi|357524829|emb|CCE64094.1| hypothetical protein TPHA_0G02585 [Tetrapisispora phaffii CBS 4417]
Length = 438
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 74 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +K VF+GG PI+ D + LK PQI+
Sbjct: 134 LAYQIRNEYLRFSKYMPEVKTAVFYGGTPIKNDADLLKNKETAPQII 180
>gi|410080890|ref|XP_003958025.1| hypothetical protein KAFR_0F02940 [Kazachstania africana CBS 2517]
gi|372464612|emb|CCF58890.1| hypothetical protein KAFR_0F02940 [Kazachstania africana CBS 2517]
Length = 443
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 73/107 (68%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 79 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG P KD E LK P IV
Sbjct: 139 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPTSKDAEILKNKETAPHIV 185
>gi|403346217|gb|EJY72497.1| putative ATP-dependent RNA helicase [Oxytricha trifallax]
Length = 422
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 85/133 (63%), Gaps = 10/133 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA++G+D+LCQAKSGMGKTAVFVL L QL V L++CHTRE
Sbjct: 60 FEHPSEVQQECIPQAMIGVDVLCQAKSGMGKTAVFVLTILHQLPDDPKPVSALILCHTRE 119
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP---------QIVGLVN-Y 143
LA+QI E+ RF++Y+ +I+ V +GG PIQ + LK P +I LVN
Sbjct: 120 LAYQIKNEFARFTRYLPDIRTEVIYGGQPIQDQIQMLKGVKPPHIVVGTPGRIKHLVNKK 179
Query: 144 ETNLSGVVVNVMD 156
+ +LSG+ + V+D
Sbjct: 180 DLDLSGLKIFVLD 192
>gi|396463395|ref|XP_003836308.1| similar to ATP-dependent RNA helicase sub2 [Leptosphaeria maculans
JN3]
gi|312212861|emb|CBX92943.1| similar to ATP-dependent RNA helicase sub2 [Leptosphaeria maculans
JN3]
Length = 486
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN--VYVLVMCHTRELAFQI 98
Q IPQA+LG D+LCQAKSG+GKTAVFVLATLQQ++ +LVMCHTRELA+QI
Sbjct: 127 QQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGIATILVMCHTRELAYQI 186
Query: 99 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
EY RF+K++ +KVGVF+GG P+ KD E L K +P I+
Sbjct: 187 RNEYNRFAKFLPEVKVGVFYGGTPVLKDIELLGNKEFHPHII 228
>gi|395745168|ref|XP_003778219.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX39A-like [Pongo abelii]
Length = 403
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 82/125 (65%), Gaps = 11/125 (8%)
Query: 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95
E QHECI QA LGMDI CQAKSG GKTAVFV AT+QQ+ V VL+ CHT ELA
Sbjct: 52 ELXEVQHECILQATLGMDIQCQAKSGKGKTAVFVPATVQQIRPVSXQVTVLIXCHTGELA 111
Query: 96 FQISKEY-ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP--------QIVGLV-NYET 145
FQISKEY E FSK M ++KV +FFGG I+K+EE L T+ P QIV LV N
Sbjct: 112 FQISKEYEEHFSKXMPSVKVSMFFGGFFIKKNEELL-TNCPHVMVGTPGQIVALVQNRSL 170
Query: 146 NLSGV 150
NL V
Sbjct: 171 NLKNV 175
>gi|397526359|ref|XP_003833095.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX39A-like [Pan paniscus]
Length = 482
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 89/142 (62%), Gaps = 11/142 (7%)
Query: 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95
E QHECI QA LGMDI CQAKSG GKTAVFV AT+QQ+ + V VL+ CHT ELA
Sbjct: 52 ELXEVQHECILQATLGMDIQCQAKSGKGKTAVFVPATVQQIRPVNXQVTVLIXCHTGELA 111
Query: 96 FQISKE-YERFSKYMSNIKVGVFFGGLPIQKDEEYLKT------HNP-QIVGLV-NYETN 146
FQISKE E FSK M ++KV VFFGGL I+K+EE L P +IV LV N N
Sbjct: 112 FQISKECNEHFSKXMPSVKVSVFFGGLFIKKNEELLMNCPRVMVGTPGRIVALVQNRSLN 171
Query: 147 LSGVVVNVMD--VRSGGWWLDL 166
L V V+D +R W D+
Sbjct: 172 LKNVKHFVLDEMLRWLDMWRDM 193
>gi|45188133|ref|NP_984356.1| ADR260Cp [Ashbya gossypii ATCC 10895]
gi|74694117|sp|Q759L6.1|SUB2_ASHGO RecName: Full=ATP-dependent RNA helicase SUB2
gi|44982950|gb|AAS52180.1| ADR260Cp [Ashbya gossypii ATCC 10895]
gi|374107571|gb|AEY96479.1| FADR260Cp [Ashbya gossypii FDAG1]
Length = 438
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 74 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG +KD E LK + P IV
Sbjct: 134 LAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNKDTAPHIV 180
>gi|363754107|ref|XP_003647269.1| hypothetical protein Ecym_6049 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890906|gb|AET40452.1| hypothetical protein Ecym_6049 [Eremothecium cymbalariae
DBVPG#7215]
Length = 438
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 74 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEVSVVVLCNARE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG +KD E LK P IV
Sbjct: 134 LAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNKETAPHIV 180
>gi|449015899|dbj|BAM79301.1| ATP-dependent RNA helicase p47 [Cyanidioschyzon merolae strain 10D]
Length = 455
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET--TDSNVYVLVMCHT 91
F + Q + +PQAVLG D+L QAKSG+GKTAVFVLA LQQLE ++++V +++ HT
Sbjct: 91 FESASEVQVQALPQAVLGTDVLVQAKSGLGKTAVFVLAILQQLEPEKSENSVSAVILAHT 150
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
RELA+QI E+ RFSKY+ +++ GVF+GG PI++ E L + P IV
Sbjct: 151 RELAYQIKNEFVRFSKYLPDVRCGVFYGGEPIKQQLEQLASSVPHIV 197
>gi|399218275|emb|CCF75162.1| unnamed protein product [Babesia microti strain RI]
Length = 434
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 71/104 (68%), Gaps = 6/104 (5%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD------SNVYVLV 87
F + QHE IP A+ G+DILCQAKSGMGKTAVFVL+ LQQ+ D S V L
Sbjct: 65 FEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSVLQQINAPDQPTDSTSGVVCLG 124
Query: 88 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
+ HTRELA+QI E++RF KY+ N+K V +GG+PIQK+ LK
Sbjct: 125 ISHTRELAYQIKNEFDRFGKYIKNVKCEVVYGGIPIQKNISMLK 168
>gi|413948697|gb|AFW81346.1| hypothetical protein ZEAMMB73_015937 [Zea mays]
Length = 344
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 69/87 (79%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRELA+QI E+ERFSKY++
Sbjct: 1 MDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLTE 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+KV VF+GG+ I+K ++ LK P IV
Sbjct: 61 VKVAVFYGGVHIRKHKDLLKNECPHIV 87
>gi|340384460|ref|XP_003390730.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Amphimedon
queenslandica]
Length = 145
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 63/81 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ATLQQLE + V VLVMCH RE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVIATLQQLEIVEGQVSVLVMCHARE 124
Query: 94 LAFQISKEYERFSKYMSNIKV 114
LA+QI KEYER + + +K
Sbjct: 125 LAYQIYKEYERQHRVTTKLKA 145
>gi|218188433|gb|EEC70860.1| hypothetical protein OsI_02372 [Oryza sativa Indica Group]
gi|222618650|gb|EEE54782.1| hypothetical protein OsJ_02179 [Oryza sativa Japonica Group]
Length = 344
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 68/87 (78%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRELA+QI E+ERFSKY+
Sbjct: 1 MDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPE 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+KV VF+GG+ I+K ++ LK P IV
Sbjct: 61 VKVAVFYGGVHIKKHKDLLKNDCPHIV 87
>gi|326426496|gb|EGD72066.1| DEAD box polypeptide 39 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 438
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA++G D++CQAKSGMGKTAVFV++ L QL+ D V LV+CH RE
Sbjct: 63 FEHPSEVQQECIPQALIGTDVICQAKSGMGKTAVFVISVLDQLKPVDGEVSCLVLCHARE 122
Query: 94 LAFQISKEYERFSKYMS-NIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA QI KE+ERF+ +MS ++ VF+GG+ + + E L+ +VG
Sbjct: 123 LADQIHKEFERFAAHMSPTVRSEVFYGGIKLSSNIEKLRNPPHVVVG 169
>gi|85000681|ref|XP_955059.1| DEAD-box family helicase [Theileria annulata strain Ankara]
gi|65303205|emb|CAI75583.1| DEAD-box family helicase, putative [Theileria annulata]
Length = 451
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 76/121 (62%), Gaps = 16/121 (13%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET--------TDSNVYV 85
F + QHE IP A+ G+DILCQAKSGMGKTAVFVL+ LQQL+ D NV
Sbjct: 74 FEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLDVEAEEGKRDADDNVKP 133
Query: 86 L--VMC----HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK--THNPQI 137
+ V C HTRELAFQI E++RFSKY+ ++ V +GG+PIQKD LK P I
Sbjct: 134 VSRVSCVGISHTRELAFQIKNEFDRFSKYLPQVRCEVVYGGVPIQKDVAMLKDPAKTPHI 193
Query: 138 V 138
+
Sbjct: 194 L 194
>gi|300707962|ref|XP_002996171.1| hypothetical protein NCER_100776 [Nosema ceranae BRL01]
gi|239605448|gb|EEQ82500.1| hypothetical protein NCER_100776 [Nosema ceranae BRL01]
Length = 397
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 73/105 (69%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IP+A+LG D+LCQAKSG GKTAVFVL+TLQQL+ D ++VM HT+E
Sbjct: 47 FEHPSEVQQMAIPKAILGQDLLCQAKSGTGKTAVFVLSTLQQLKVVDKETVIIVMVHTKE 106
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+A Q+ +EY RFSK M N+ VG +GG I++D + L T +P ++
Sbjct: 107 MAEQVKQEYLRFSKKMDNVSVGAVYGGNDIEEDIKLLGTCSPSVL 151
>gi|237843393|ref|XP_002370994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|211968658|gb|EEB03854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|221481804|gb|EEE20174.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
gi|221502304|gb|EEE28037.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 434
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 71/105 (67%), Gaps = 7/105 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL-------ETTDSNVYVL 86
F + QHE IP A+ G+D+LCQAKSGMGKTAVFVL+ LQQL E V L
Sbjct: 64 FEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQLNLDTSGEEGNTQGVVCL 123
Query: 87 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
+ HTRELAFQI E++RFSKY+ N+K V +GG+ IQK+ + LK
Sbjct: 124 GIAHTRELAFQIKNEFDRFSKYLKNVKCEVVYGGISIQKNIDMLK 168
>gi|401412201|ref|XP_003885548.1| hypothetical protein NCLIV_059450 [Neospora caninum Liverpool]
gi|325119967|emb|CBZ55520.1| hypothetical protein NCLIV_059450 [Neospora caninum Liverpool]
Length = 434
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 71/105 (67%), Gaps = 7/105 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL-------ETTDSNVYVL 86
F + QHE IP A+ G+D+LCQAKSGMGKTAVFVL+ LQQL E V L
Sbjct: 64 FEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQLNLDASGEEGNTQGVVCL 123
Query: 87 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
+ HTRELAFQI E++RFSKY+ N+K V +GG+ IQK+ + LK
Sbjct: 124 GIAHTRELAFQIKNEFDRFSKYLKNVKCEVVYGGISIQKNIDMLK 168
>gi|357436965|ref|XP_003588758.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355477806|gb|AES59009.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 344
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 68/87 (78%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MD+LCQAKSGMGKTAVFVL+TLQQ++ V L++CHTRELA+QI E+ERFS Y+++
Sbjct: 1 MDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTRELAYQICHEFERFSTYLAD 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+KV VF+GG+ I+ ++ LK P IV
Sbjct: 61 LKVAVFYGGVNIKVHKDLLKNECPHIV 87
>gi|50309861|ref|XP_454944.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690098|sp|Q6CM95.1|SUB2_KLULA RecName: Full=ATP-dependent RNA helicase SUB2
gi|49644079|emb|CAH00031.1| KLLA0E21935p [Kluyveromyces lactis]
Length = 437
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 72/107 (67%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARE 132
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKYM ++K VF+GG + D + L K P I+
Sbjct: 133 LAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
>gi|212537399|ref|XP_002148855.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces marneffei
ATCC 18224]
gi|210068597|gb|EEA22688.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces marneffei
ATCC 18224]
Length = 349
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 49 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108
+L D+LCQAKSG+GKTAVFVL TL L+ + V VLVMCHTRELA+QI EY RFSKY
Sbjct: 1 MLHSDLLCQAKSGLGKTAVFVLTTLHGLDPVEGEVQVLVMCHTRELAYQIKNEYARFSKY 60
Query: 109 MSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
+ +K VF+GG P+QKD E L K P IV
Sbjct: 61 LPQVKTAVFYGGTPMQKDIELLSNKETRPNIV 92
>gi|413950342|gb|AFW82991.1| hypothetical protein ZEAMMB73_566534, partial [Zea mays]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 67/87 (77%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRELA+QI E+ERFSKY+
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLPE 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++V VF+GG+ I+ ++ LK P IV
Sbjct: 61 LRVAVFYGGVHIKNHKDLLKNECPHIV 87
>gi|242809323|ref|XP_002485345.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
ATCC 10500]
gi|218715970|gb|EED15392.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
ATCC 10500]
Length = 349
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 49 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108
+L D+LCQAKSG+GKTAVFVL TL L+ + V VLVMCHTRELA+QI EY RFSKY
Sbjct: 1 MLHSDLLCQAKSGLGKTAVFVLTTLHGLDPVEGEVQVLVMCHTRELAYQIKNEYARFSKY 60
Query: 109 MSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
+ +K VF+GG P+QKD E L K P IV
Sbjct: 61 LPQVKTAVFYGGTPMQKDIEILSNKETRPNIV 92
>gi|428671965|gb|EKX72880.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 471
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 77/128 (60%), Gaps = 23/128 (17%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---------------- 77
F + QHE IP A+ G+DILCQAKSGMGKTAVFVL+ LQQ+E
Sbjct: 76 FEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQIEVEEGDVVTGGVKREAD 135
Query: 78 -----TTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK- 131
T++ + + + HTRELAFQI E++RFSKY+S ++ V +GG+PIQKD L
Sbjct: 136 GEAKATSEPKIACIGISHTRELAFQIKNEFDRFSKYLSGVRCEVVYGGIPIQKDIAMLSD 195
Query: 132 -THNPQIV 138
T P I+
Sbjct: 196 PTKCPHIL 203
>gi|71027499|ref|XP_763393.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68350346|gb|EAN31110.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 451
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 16/121 (13%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT------DSNVYVLV 87
F + QHE IP A+ G+DILCQAKSGMGKTAVFVL+ LQQL+ D+ V
Sbjct: 74 FEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLDVEAEEGKRDAEDNVKP 133
Query: 88 MC--------HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK--THNPQI 137
+C HTRELAFQI E++RFSKY+ ++ V +GG+PIQKD LK P I
Sbjct: 134 VCRVSCIGISHTRELAFQIKNEFDRFSKYLPQVRCEVVYGGVPIQKDVAMLKDPAKTPHI 193
Query: 138 V 138
+
Sbjct: 194 L 194
>gi|403223084|dbj|BAM41215.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 453
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 15/113 (13%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD------------- 80
F + QHE IP A+ G+DILCQAKSGMGKTAVFVL+ LQQL+
Sbjct: 75 FEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLDVDADEPVKRDAQDNLR 134
Query: 81 --SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
S V + + HTRELAFQI E++RFSKY+ +++ V +GG+PIQKD LK
Sbjct: 135 PISRVSCVGISHTRELAFQIKNEFDRFSKYLPSVRCEVVYGGVPIQKDVAMLK 187
>gi|449441916|ref|XP_004138728.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Cucumis
sativus]
Length = 344
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 67/87 (77%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRELA+QI E+ERFS Y+ +
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPD 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+KV VF+GG+ I+ ++ LK P IV
Sbjct: 61 LKVAVFYGGVNIKIHKDLLKNECPHIV 87
>gi|123449042|ref|XP_001313244.1| ATP-dependent RNA helicase p47 [Trichomonas vaginalis G3]
gi|121895120|gb|EAY00315.1| ATP-dependent RNA helicase p47, putative [Trichomonas vaginalis G3]
Length = 420
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 69/105 (65%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIP A+LG DI+CQ KSGMGKTAVFV++ LQQL+ V L + TRE
Sbjct: 58 FEHPSQVQQECIPHALLGTDIICQGKSGMGKTAVFVISVLQQLDPVPGEVSCLTIAPTRE 117
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI+ E++RF+K+M + VF+GG+P + LK P IV
Sbjct: 118 LAFQIATEFQRFTKFMPGVDSVVFYGGIPKATNIATLKEKKPCIV 162
>gi|432094980|gb|ELK26388.1| ATP-dependent RNA helicase DDX39A [Myotis davidii]
Length = 509
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 74/120 (61%), Gaps = 24/120 (20%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QH+C PQA+LGMD+LCQA+SGMGKT+VFVLATLQ
Sbjct: 64 FEHASEVQHQCTPQAILGMDVLCQAQSGMGKTSVFVLATLQ------------------- 104
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
QI KEYERFSKYM +KV VFFGGL ++KD+E LK + P + +V +S +V N
Sbjct: 105 ---QIRKEYERFSKYMPIVKVSVFFGGLSMKKDKEVLKKNYPHV--MVGIPGRISALVRN 159
>gi|186522071|ref|NP_850807.2| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|332004258|gb|AED91641.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
Length = 344
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRELA+QI E+ RFS Y+ +
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
KV VF+GG+ I+ ++ LK P IV
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECPHIV 87
>gi|407406944|gb|EKF30991.1| RNA helicase, putative [Trypanosoma cruzi marinkellei]
Length = 436
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 83/136 (61%), Gaps = 7/136 (5%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYVLVMC 89
F + QH+ +PQA+LG DIL QAKSGMGKTAVFV A L+Q+E + +V+
Sbjct: 57 FEHPSEVQHQALPQAMLGADILAQAKSGMGKTAVFVFALLEQIEKVPEGQKPHCQAIVVV 116
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
H RELA+QI +E++RF+KY+ GVFFGG+P ++ + LK P IV V LS
Sbjct: 117 HARELAYQIEQEFKRFNKYLPYCTTGVFFGGIPEDENVKQLKKEVPAIV--VGTPGRLSA 174
Query: 150 VV-VNVMDVRSGGWWL 164
++ +DV W++
Sbjct: 175 LIQRKALDVSRVKWFV 190
>gi|227206296|dbj|BAH57203.1| AT5G11170 [Arabidopsis thaliana]
Length = 177
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRELA+QI E+ RFS Y+ +
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
KV VF+GG+ I+ ++ LK P IV
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECPHIV 87
>gi|156083913|ref|XP_001609440.1| eIF-4A-like DEAD family RNA helicase [Babesia bovis T2Bo]
gi|154796691|gb|EDO05872.1| eIF-4A-like DEAD family RNA helicase, putative [Babesia bovis]
Length = 472
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 72/119 (60%), Gaps = 21/119 (17%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD------------- 80
F + QHE IP A+ G+DILCQAKSGMGKTAVFVL+ LQQL+ +
Sbjct: 76 FEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSVLQQLDVQEDGTLAGGVKRDAG 135
Query: 81 --------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
V L + HTRELA+QI E++RFSKYM+ ++ V +GG+PI +D E LK
Sbjct: 136 GEAVAPSADRVACLGISHTRELAYQIKNEFDRFSKYMNGVRCEVVYGGVPISRDIEMLK 194
>gi|62320763|dbj|BAD95431.1| DEAD BOX RNA helicase RH15 - like protein [Arabidopsis thaliana]
Length = 177
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111
MD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRELA+QI E+ RFS Y+ +
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQVEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 112 IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
KV VF+GG+ I+ ++ LK P IV
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECPHIV 87
>gi|71411514|ref|XP_808002.1| RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70872119|gb|EAN86151.1| RNA helicase, putative [Trypanosoma cruzi]
gi|407837305|gb|EKF99724.1| RNA helicase, putative [Trypanosoma cruzi]
Length = 436
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 83/136 (61%), Gaps = 7/136 (5%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYVLVMC 89
F + QH+ +PQA+LG DIL QAKSGMGKTAVFV A L+Q+E + +V+
Sbjct: 57 FEHPSEVQHQALPQAMLGADILAQAKSGMGKTAVFVFALLEQIEKVPEGQKPHCQGIVVV 116
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
H RELA+QI +E++RF+KY+ GVFFGG+P ++ + LK P IV V LS
Sbjct: 117 HARELAYQIEQEFKRFNKYLPYCTTGVFFGGIPEDENVKQLKKEVPAIV--VGTPGRLSA 174
Query: 150 VV-VNVMDVRSGGWWL 164
++ +DV W++
Sbjct: 175 LIQRKALDVSRVKWFV 190
>gi|71746514|ref|XP_822312.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831980|gb|EAN77484.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331976|emb|CBH14969.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 436
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE-TTDSN---VYVLVMC 89
F + QH+ +PQA+LG DIL QAKSGMGKTAVFV A L+Q+E TD +V+
Sbjct: 57 FEHPSEVQHQALPQAMLGADILAQAKSGMGKTAVFVFALLEQVEKPTDGQRPFCQAIVIA 116
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
H RELA+QI +E++RF+KY+ + GVFFGG+P ++ + LK P IV
Sbjct: 117 HARELAYQIEQEFKRFNKYLPHCTTGVFFGGVPEDENIKQLKKEVPAIV 165
>gi|154337278|ref|XP_001564872.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061910|emb|CAM38950.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 413
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 4/109 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMC 89
F + QH+ +P+A+LG DIL QAKSGMGKTAVFV A L+Q+E +V+
Sbjct: 34 FEHPSEVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQVEKAPQGQKPYCQAVVLV 93
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
H RELA+QI +E++RFSKY+S GVFFGG+P ++ + LK P I+
Sbjct: 94 HARELAYQIEQEFKRFSKYLSYATTGVFFGGIPEDENVKQLKKEVPAII 142
>gi|342183801|emb|CCC93281.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma congolense
IL3000]
Length = 436
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 4/109 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMC 89
F + QH+ +PQA+LG DIL QAKSGMGKTAVFV A L+Q+E +V+
Sbjct: 57 FEHPSEVQHQALPQAMLGADILAQAKSGMGKTAVFVFALLEQVEKVPEGQRPYCQAIVVA 116
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
H RELA+QI +E++RF+KY+ + GVFFGG+P ++ + LK P IV
Sbjct: 117 HARELAYQIEQEFKRFNKYLPHCTTGVFFGGIPEDENVKQLKKEVPAIV 165
>gi|71399511|ref|XP_802802.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
Brener]
gi|70864948|gb|EAN81356.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 209
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 83/136 (61%), Gaps = 7/136 (5%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYVLVMC 89
F + QH+ +PQA+LG DIL QAKSGMGKTAVFV A L+Q+E + +V+
Sbjct: 57 FEHPSEVQHQALPQAMLGADILAQAKSGMGKTAVFVFALLEQIEKVPEGQKPHCQAIVVV 116
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
H RELA+QI +E++RF+KY+ GVFFGG+P ++ + LK P IV V LS
Sbjct: 117 HARELAYQIEQEFKRFNKYLPYCTTGVFFGGIPEDENVKQLKKEVPAIV--VGTPGRLSA 174
Query: 150 VV-VNVMDVRSGGWWL 164
++ ++V W++
Sbjct: 175 LIQRKALEVSRVKWFV 190
>gi|340056658|emb|CCC50994.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma vivax Y486]
Length = 436
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 83/136 (61%), Gaps = 7/136 (5%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMC 89
F + QH+ +PQA+LG DIL QAKSGMGKTAVFV A L+Q+E +V+
Sbjct: 57 FEHPSEVQHQALPQAMLGADILAQAKSGMGKTAVFVFALLEQVEKVPEGQKPYCQAIVIA 116
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
H+RELA+QI +E++RF+KY+ + VFFGG+P ++ + LK P IV V +S
Sbjct: 117 HSRELAYQIKQEFKRFNKYLPHCTTDVFFGGIPEDENVKQLKKEVPAIV--VATPGRISA 174
Query: 150 VV-VNVMDVRSGGWWL 164
++ +DV W++
Sbjct: 175 LIQRKALDVSRVKWFV 190
>gi|340508679|gb|EGR34336.1| hypothetical protein IMG5_015740 [Ichthyophthirius multifiliis]
Length = 711
Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q+ CIP A+ G DILCQAK+G GKTAVFVL+ L QL LV+CHTRE
Sbjct: 59 FERPSEVQYNCIPNAIHGTDILCQAKAGTGKTAVFVLSILNQLSDDTPPYSCLVLCHTRE 118
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI E++R KY +N K FGG+ Q D LK PQI+
Sbjct: 119 LAFQIKNEFKRLGKY-TNFKTRAIFGGVDEQDDIAILKQKKPQIL 162
>gi|401421849|ref|XP_003875413.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322491650|emb|CBZ26923.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 435
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMC 89
F + QH+ +P+A+LG DIL QAKSGMGKTAVFV A L+Q+E +V+
Sbjct: 56 FEHPSEVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQVEKVPQGQKPYCQAVVLV 115
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
H RELA+QI +E++RFSKY+ GVFFGG+P ++ + LK P I+
Sbjct: 116 HARELAYQIEQEFKRFSKYLPYATTGVFFGGIPEDENVKQLKKEVPAII 164
>gi|157869116|ref|XP_001683110.1| putative RNA helicase [Leishmania major strain Friedlin]
gi|68223993|emb|CAJ04917.1| putative RNA helicase [Leishmania major strain Friedlin]
Length = 435
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMC 89
F + QH+ +P+A+LG DIL QAKSGMGKTAVFV A L+Q+E +V+
Sbjct: 56 FEHPSEVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQVEKVPQGQKPYCQAVVLV 115
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
H RELA+QI +E++RFSKY+ GVFFGG+P ++ + LK P I+
Sbjct: 116 HARELAYQIEQEFKRFSKYLPYATTGVFFGGIPEDENVKQLKKEVPAII 164
>gi|146086104|ref|XP_001465449.1| putative RNA helicase [Leishmania infantum JPCM5]
gi|398015018|ref|XP_003860699.1| RNA helicase, putative [Leishmania donovani]
gi|134069547|emb|CAM67870.1| putative RNA helicase [Leishmania infantum JPCM5]
gi|322498921|emb|CBZ33994.1| RNA helicase, putative [Leishmania donovani]
Length = 517
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMC 89
F + QH+ +P+A+LG DIL QAKSGMGKTAVFV A L+Q+E +V+
Sbjct: 138 FEHPSEVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQVEKVPQGQKPYCQAVVLV 197
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
H RELA+QI +E++RFSKY+ GVFFGG+P ++ + LK P I+
Sbjct: 198 HARELAYQIEQEFKRFSKYLPYATTGVFFGGIPEDENVKQLKKEVPAII 246
>gi|68073823|ref|XP_678826.1| helicase [Plasmodium berghei strain ANKA]
gi|56499417|emb|CAI04881.1| helicase, putative [Plasmodium berghei]
Length = 466
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 75/131 (57%), Gaps = 26/131 (19%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS------------ 81
F + Q E IP A+ G DILCQAKSGMGKTAVFVL+ LQQLET DS
Sbjct: 79 FEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQLETNDSKDIKEEKDMNNA 138
Query: 82 -----------NVYV--LVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 128
N YV L + HTRELA+QI E++RFSKY+ N++ V +GG+ + K
Sbjct: 139 SGDMNQNSGSQNKYVRCLGIAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHVV 198
Query: 129 YLKTHN-PQIV 138
K +N P I+
Sbjct: 199 LFKGNNIPHII 209
>gi|146182736|ref|XP_001025134.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|146143751|gb|EAS04889.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 476
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QH+CIP A+ G D+LCQAK+G GKTAVFVL+ L QL LV+CHTRE
Sbjct: 58 FERPSEVQHQCIPNAIHGKDVLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRE 117
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI E++R K+ +N KV +GG+ D LKT P I+
Sbjct: 118 LAFQIKNEFKRLGKF-TNFKVKAVYGGVEESVDIHTLKTKKPHIL 161
>gi|83317473|ref|XP_731176.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii 17XNL]
gi|23491131|gb|EAA22741.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
Length = 497
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 75/131 (57%), Gaps = 26/131 (19%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS------------ 81
F + Q E IP A+ G DILCQAKSGMGKTAVFVL+ LQQLET DS
Sbjct: 79 FEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQLETNDSKDIKEEKDMNNA 138
Query: 82 -----------NVYV--LVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 128
N YV L + HTRELA+QI E++RFSKY+ N++ V +GG+ + K
Sbjct: 139 NGDMNQNSGSQNKYVRCLGIAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHVV 198
Query: 129 YLKTHN-PQIV 138
K +N P I+
Sbjct: 199 LFKGNNIPHII 209
>gi|1749748|dbj|BAA13931.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 339
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Query: 59 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 118
KSGMGKTAVFVL+TLQQ+E D V VLV+CHTRELAFQI EY RFSKY+ +++ VF+
Sbjct: 1 KSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFY 60
Query: 119 GGLPIQKDEEYL--KTHNPQIV 138
GG+ I++D E K+ +P IV
Sbjct: 61 GGINIKQDMEAFKDKSKSPHIV 82
>gi|340508110|gb|EGR33893.1| hypothetical protein IMG5_032380 [Ichthyophthirius multifiliis]
Length = 389
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q+ CIP A+ G DILCQAK+G GKTAVFVL+ L QL LV+CHTRE
Sbjct: 53 FERPSEVQYNCIPNAIHGTDILCQAKAGTGKTAVFVLSVLNQLAEDTPPYSCLVLCHTRE 112
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQI E++R KY +N K FGG+ Q D LK P I+
Sbjct: 113 LAFQIKNEFKRLGKY-TNFKTRAIFGGVEEQDDIAILKQKKPHIL 156
>gi|349804073|gb|AEQ17509.1| putative dead (asp-glu-ala-asp) box polypeptide 39 [Hymenochirus
curtipes]
Length = 352
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 54/69 (78%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMDILCQAKSGMGKTAV VLATLQQ+E D V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVLVLATLQQIEAVDGQVSVLVMCHTRE 123
Query: 94 LAFQISKEY 102
L F+ K +
Sbjct: 124 LNFKNVKHF 132
>gi|167387857|ref|XP_001738337.1| spliceosome RNA helicase Bat1 [Entamoeba dispar SAW760]
gi|167394345|ref|XP_001740939.1| spliceosome RNA helicase Bat1 [Entamoeba dispar SAW760]
gi|165894738|gb|EDR22621.1| spliceosome RNA helicase Bat1, putative [Entamoeba dispar SAW760]
gi|165898511|gb|EDR25351.1| spliceosome RNA helicase Bat1, putative [Entamoeba dispar SAW760]
Length = 419
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP+A+L DILCQAKSGMGKTAVFV++ L Q V LV+CHTRE
Sbjct: 53 FEHPSEVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCLGDYVSALVICHTRE 112
Query: 94 LAFQISKEYERFSKYM-----SNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q KE++R K + I G F GG+ +KD E++KTH P IV
Sbjct: 113 LALQAQKEFDRMKKRLCEATGKEIPTGTFVGGVEEKKDIEFIKTHKPTIV 162
>gi|407038866|gb|EKE39347.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 419
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 14/147 (9%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP+A+L DILCQAKSGMGKTAVFV++ L Q V LV+CHTRE
Sbjct: 53 FEHPSEVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCLGDYVSALVICHTRE 112
Query: 94 LAFQISKEYERFSKYM-----SNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLS 148
LA Q+ KE++R K + I G F GG +KD E++KT+ P IV
Sbjct: 113 LAVQVQKEFDRMKKRLCEATGKEIPTGTFVGGFDEKKDVEFIKTNKPTIV------IGTP 166
Query: 149 GVVVNVMDVRSGGWWLD-LEALILSKC 174
G + ++ VR G L+ L+ ++ +C
Sbjct: 167 GRIASL--VRQGALNLNKLDTFVIDEC 191
>gi|124801080|ref|XP_001349607.1| DEAD box helicase, UAP56 [Plasmodium falciparum 3D7]
gi|3845186|gb|AAC71878.1| DEAD box helicase, UAP56 [Plasmodium falciparum 3D7]
gi|156072122|gb|ABU45412.1| DEAD-box helicase 1 [Plasmodium falciparum]
Length = 457
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 73/126 (57%), Gaps = 21/126 (16%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----------- 82
F + Q E IP A+ G DILCQAKSGMGKTAVFVL+ LQQL+T ++
Sbjct: 75 FEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQLDTNENQDMQDTKEMNND 134
Query: 83 ---------VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH 133
V L + HTRELA+QI E++RFSKY+ N++ V +GG+ + K + K
Sbjct: 135 NNNNGDNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKED 194
Query: 134 N-PQIV 138
N P I+
Sbjct: 195 NIPHII 200
>gi|67480889|ref|XP_655794.1| helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472953|gb|EAL50406.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708168|gb|EMD47681.1| spliceosome RNA helicase Bat1, putative [Entamoeba histolytica
KU27]
Length = 419
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP+A+L DILCQAKSGMGKTAVFV++ L Q V LV+CHTRE
Sbjct: 53 FEHPSEVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCLGDYVSALVICHTRE 112
Query: 94 LAFQISKEYERFSKYM-----SNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLS 148
LA Q+ KE++R K + I G F GG +KD E++KT+ P IV
Sbjct: 113 LAVQVQKEFDRMKKRLCEATGKEITTGTFVGGFDEKKDVEFIKTNKPTIV------IGTP 166
Query: 149 GVVVNVMDVRSGGWWLD-LEALILSKC 174
G + ++ VR G L L+ ++ +C
Sbjct: 167 GRIASL--VRQGALNLSKLDTFVIDEC 191
>gi|183232447|ref|XP_001913717.1| ATP-dependent RNA helicase DDX39 [Entamoeba histolytica HM-1:IMSS]
gi|169802031|gb|EDS89507.1| ATP-dependent RNA helicase DDX39, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 241
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP+A+L DILCQAKSGMGKTAVFV++ L Q V LV+CHTRE
Sbjct: 53 FEHPSEVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCLGDYVSALVICHTRE 112
Query: 94 LAFQISKEYERFSKYM-----SNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLS 148
LA Q+ KE++R K + I G F GG +KD E++KT+ P IV
Sbjct: 113 LAVQVQKEFDRMKKRLCEATGKEITTGTFVGGFDEKKDVEFIKTNKPTIV------IGTP 166
Query: 149 GVVVNVMDVRSGGWWLD-LEALILSKC 174
G + ++ VR G L L+ ++ +C
Sbjct: 167 GRIASL--VRQGALNLSKLDTFVIDEC 191
>gi|428172586|gb|EKX41494.1| hypothetical protein GUITHDRAFT_88396 [Guillardia theta CCMP2712]
Length = 432
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 66/105 (62%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q E IP + G DI+ QAK+GMGKTAVFV L+++ + ++ LV+ HTRE
Sbjct: 56 FEHPSKVQEEAIPDGLAGHDIVAQAKAGMGKTAVFVTVILERIAADEQSLQALVVVHTRE 115
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+Q++KE+ERF Y+ I V +GG+P+ + E L P IV
Sbjct: 116 LAYQVAKEFERFKAYLEGITVQCIYGGVPLPQQEASLTKDKPHIV 160
>gi|168985564|emb|CAQ10642.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 125
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 50/61 (81%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 L 94
L
Sbjct: 125 L 125
>gi|194380710|dbj|BAG58508.1| unnamed protein product [Homo sapiens]
Length = 243
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 46 PQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105
P L C ++S G + L+ Q+ V VLVMCHTRELAFQISKEYERF
Sbjct: 37 PSTALAFVTSCSSQSCSGPLSTVALSIRQK-------VSVLVMCHTRELAFQISKEYERF 89
Query: 106 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
SKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 90 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 122
>gi|444317196|ref|XP_004179255.1| hypothetical protein TBLA_0B09205 [Tetrapisispora blattae CBS 6284]
gi|387512295|emb|CCH59736.1| hypothetical protein TBLA_0B09205 [Tetrapisispora blattae CBS 6284]
Length = 453
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + +PQA++G DILCQ KSG GKTA+F+L+TLQ + V V+CH+RE
Sbjct: 93 FEHPSEVQQQALPQALIGRDILCQGKSGSGKTAIFILSTLQNINLIRGEVSCAVLCHSRE 152
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+Q+++EY++FSKYM ++ GG I+ D K P IV
Sbjct: 153 LAYQVNEEYKKFSKYMVDLITVASIGGTSIKNDGGVFKNKKKCPNIV 199
>gi|390371118|dbj|GAB64999.1| eIF-4A-like DEAD family RNA helicase [Plasmodium cynomolgi strain
B]
Length = 472
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 73/137 (53%), Gaps = 32/137 (23%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD------------- 80
F + Q E IP A+ G DILCQAKSGMGKTAVFVL+ LQQLET D
Sbjct: 79 FEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQLETNDGKDIKEEKEMNNT 138
Query: 81 -SN-----------------VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 122
SN V L + HTRELA+QI E++RFSKY+ ++ V +GG+
Sbjct: 139 TSNNIGGDLTNGNGAPKNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKGVRCEVVYGGIA 198
Query: 123 IQKDEEYLKTHN-PQIV 138
+ K + K + P I+
Sbjct: 199 MSKHIKMFKEESVPHII 215
>gi|221053125|ref|XP_002257937.1| helicase [Plasmodium knowlesi strain H]
gi|193807769|emb|CAQ38474.1| helicase, putative [Plasmodium knowlesi strain H]
Length = 472
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 71/137 (51%), Gaps = 32/137 (23%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----------- 82
F + Q E IP A+ G DILCQAKSGMGKTAVFVL+ LQQLET D
Sbjct: 79 FEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQLETNDEKDIKDEKEMNSS 138
Query: 83 --------------------VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 122
V L + HTRELA+QI E++RFSKY+ ++ V +GG+
Sbjct: 139 TSNNIGGGLTNGDGASKNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKGVRCEVVYGGIS 198
Query: 123 IQKDEEYLKTHN-PQIV 138
+ K + K + P I+
Sbjct: 199 MSKHIKMFKEESIPHII 215
>gi|356545019|ref|XP_003540943.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine
max]
Length = 136
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 50/64 (78%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + +HECIPQA+LGMD++CQAKSGMG TAVFVL+TLQQ + V LV+CHTRE
Sbjct: 64 FEHPSEVRHECIPQAILGMDVVCQAKSGMGNTAVFVLSTLQQADPVPDQVAALVLCHTRE 123
Query: 94 LAFQ 97
LA+Q
Sbjct: 124 LAYQ 127
>gi|168985567|emb|CAQ10645.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 136
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 46/57 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCH
Sbjct: 80 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 136
>gi|300123033|emb|CBK24040.2| unnamed protein product [Blastocystis hominis]
Length = 1030
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 10/124 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD------SNVYVLV 87
F + Q +CIP+A++ DILCQA+SGMGKT VFV++ LQ ++ +D S+ +
Sbjct: 662 FEHPSEVQSQCIPKALMRGDILCQARSGMGKTCVFVISVLQNIKHSDHVRFFPSDAHTQT 721
Query: 88 MC----HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY 143
C HTRE+A QI++E+ R KY+ +I + FGG+P++K +K+ +VG
Sbjct: 722 TCVVFSHTREMAIQITREFIRLGKYLPDIVIKTVFGGVPLRKSMADIKSGCDILVGTAGR 781
Query: 144 ETNL 147
+L
Sbjct: 782 IADL 785
>gi|67467036|ref|XP_649638.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56466118|gb|EAL44250.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|407040845|gb|EKE40355.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
gi|449704037|gb|EMD44359.1| ATPdependent RNA helicase SUB2, putative [Entamoeba histolytica
KU27]
Length = 419
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 5/110 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP+A+L DILCQAKSGMGKTAVFVL+ L Q +V +V+CHTRE
Sbjct: 53 FEHPSEVQSQVIPKALLRQDILCQAKSGMGKTAVFVLSILNQGLFLGDHVSAIVICHTRE 112
Query: 94 LAFQISKEYERFSKYM-----SNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+ E++R K + +I+ + GG P D + LK P I+
Sbjct: 113 LARQVQNEFDRMKKRLVESIGKDIQTASYIGGNPESNDVDDLKNRKPTII 162
>gi|402468594|gb|EJW03725.1| hypothetical protein EDEG_01983 [Edhazardia aedis USNM 41457]
Length = 450
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 10/122 (8%)
Query: 21 RREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD 80
R E + I + Q F + Q +CIP+A+LG DIL QAKSG GKTAVFVL+ LQQ++ D
Sbjct: 33 RDELNESIKDIQ-FEHPSDVQQQCIPKAILGCDILAQAKSGTGKTAVFVLSVLQQIK--D 89
Query: 81 SNVYVLVMCHTRELAFQISKEYERFSKYMS-NIKVGVFFGGLPIQKD------EEYLKTH 133
S + + + HT+ELA Q+ E++RF ++ ++KV F+GG+ ++ D E T
Sbjct: 90 SQLSCVCLVHTKELAQQVCNEFKRFVRHFKFDVKVEEFYGGVSVENDLVRLGKSEKADTF 149
Query: 134 NP 135
NP
Sbjct: 150 NP 151
>gi|440494146|gb|ELQ76551.1| ATP-dependent RNA helicase [Trachipleistophora hominis]
Length = 397
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 4/105 (3%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD---SNVYVLVMCHTREL 94
++ Q + IP+AVLG DI+CQAKSG GKT VFVL+ LQ++ D + V V+ + +T+E+
Sbjct: 49 SAVQQQVIPKAVLGADIICQAKSGTGKTVVFVLSALQRINAEDVSPARVQVMAVANTKEM 108
Query: 95 AFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
QI+ E+ RF Y +++KV + FGG+ + D E LK +VG
Sbjct: 109 VVQIANEFRRFMSY-TDLKVEMVFGGVDVNGDVEKLKARVDVVVG 152
>gi|167388903|ref|XP_001738737.1| ATP-dependent RNA helicase SUB2 [Entamoeba dispar SAW760]
gi|165897879|gb|EDR24925.1| ATP-dependent RNA helicase SUB2, putative [Entamoeba dispar SAW760]
Length = 419
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 65/110 (59%), Gaps = 5/110 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP+A+L D+LCQAKSGMGKTAVFVL+ L Q +V +V+CHTRE
Sbjct: 53 FEHPSEVQSQVIPKALLRQDVLCQAKSGMGKTAVFVLSILNQGLFLGDHVSAIVVCHTRE 112
Query: 94 LAFQISKEYERFSKYM-----SNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+ E++R K + +I+ + GG P D + LK P I+
Sbjct: 113 LARQVQNEFDRMKKRLVESIGKDIQTASYIGGNPESNDVDDLKNRKPTII 162
>gi|440302714|gb|ELP95021.1| ATP-dependent RNA helicase SUB2, putative [Entamoeba invadens IP1]
Length = 420
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ-LETTDSNVYVLVMCHTR 92
F + Q + IP+A++ DILCQAKSGMGKTAVFV+ L Q L V LV+CHT
Sbjct: 53 FEHPSEVQSQVIPKALIRQDILCQAKSGMGKTAVFVITILNQGLFIGKKGVSTLVICHTH 112
Query: 93 ELAFQISKEYERFSKYMSN-----IKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELA Q+ KE++R K + I + GG P D E LK +P IV
Sbjct: 113 ELAKQVQKEFDRMKKRLETAIEKEINTASYIGGTPEADDAEDLKNRSPSIV 163
>gi|340500508|gb|EGR27377.1| hypothetical protein IMG5_196470 [Ichthyophthirius multifiliis]
Length = 401
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
Q +CIP+A+ G DILCQAK+G GKTAVFV++ L QL LV+CHTRE A+ I
Sbjct: 60 QQKCIPKAIFGTDILCQAKAGTGKTAVFVISVLNQLSDNSPPFSCLVLCHTRESAYYIKN 119
Query: 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
E++R K+ + K FGG+ + D LK P I+
Sbjct: 120 EFKRLGKF-TIFKTETVFGGVQEKIDAVKLKNEQPHIL 156
>gi|356562030|ref|XP_003549278.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
56-like [Glycine max]
Length = 237
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 60/100 (60%), Gaps = 12/100 (12%)
Query: 41 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100
QHECIPQ KSGMGK VFVL TL Q++ Y L +CHTRELA+QI
Sbjct: 62 QHECIPQE----------KSGMGKMIVFVLXTLXQIDPVARQDYALXLCHTRELAYQICH 111
Query: 101 EYERFSKYMSNIKVGVFF--GGLPIQKDEEYLKTHNPQIV 138
E+ERF Y++++KVG FF G+ I+ + +K P IV
Sbjct: 112 EFERFRTYLTDLKVGFFFFYDGIKIKSSQGSIKNECPNIV 151
>gi|391335247|ref|XP_003742007.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Metaseiulus
occidentalis]
Length = 389
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 6/114 (5%)
Query: 25 EDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY 84
EDR G +P + Q + +P A+ G D+LCQ+K+G GKTAVF+L+TL Q+E D +
Sbjct: 18 EDR-GYCKP----SPIQEKALPDALAGHDLLCQSKTGSGKTAVFILSTLNQMEFEDF-IE 71
Query: 85 VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+V+ TRELA Q EY+ K++ N + FFGGLP+ + +++ P IV
Sbjct: 72 TVVLVPTRELAVQTVAEYQMLGKFLKNCRTSAFFGGLPLNVNIANIRSSAPNIV 125
>gi|326469268|gb|EGD93277.1| ATP-dependent RNA helicase sub2 [Trichophyton tonsurans CBS 112818]
Length = 440
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L M ++ K + F L QLE +LVMC TRE
Sbjct: 78 FEHPSEVQQVCIPTAIL-MSTSLSSQVRSRKDSCFCLDHSPQLEPVPGTCSILVMCPTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LA+QI EY RFSKYM ++K VF+GG PIQKD E L TH IVG
Sbjct: 137 LAYQIKDEYARFSKYMPDVKTAVFYGGTPIQKDIEILSSKDTHPNIIVG 185
>gi|145508319|ref|XP_001440109.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407315|emb|CAK72712.1| unnamed protein product [Paramecium tetraurelia]
Length = 424
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T Q E + A+LG ++CQAK+G GKTAVFVL L + + V LV+ HTRE
Sbjct: 46 FEHPTRVQAESLTNALLGEQLICQAKAGTGKTAVFVLTVLNTINIDSNKVECLVITHTRE 105
Query: 94 LAFQISKEYERFSKYMSNIKVGVFF-GGLPIQKDEEYLKTHNPQIV 138
LA Q E+ R K+M N+KV F+ GG P+ + + ++T PQIV
Sbjct: 106 LAQQARDEFLRLGKFMKNVKVECFYGGGEPVSVNIQTIETVKPQIV 151
>gi|145483885|ref|XP_001427965.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395048|emb|CAK60567.1| unnamed protein product [Paramecium tetraurelia]
Length = 471
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T Q E + A+LG ++CQAK+G GKTAVFVL L + T + V LV+ HTRE
Sbjct: 93 FEHPTRVQAESLTNALLGEQLICQAKAGTGKTAVFVLTVLNTINTESNKVECLVITHTRE 152
Query: 94 LAFQISKEYERFSKYMSNIKVGVFF-GGLPIQKDEEYLKTHNPQIV 138
LA Q E+ R K+M ++KV F+ GG P+ + + ++T PQIV
Sbjct: 153 LAQQARDEFLRLGKFMKSVKVECFYGGGEPVSVNIQTIETVKPQIV 198
>gi|333986675|ref|YP_004519282.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333824819|gb|AEG17481.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. SWAN-1]
Length = 530
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q IP + G D++ QA++G GKTA F + L+ ++ D ++ +++C TRE
Sbjct: 24 FEEATPIQSLAIPHVLDGRDVIGQAQTGTGKTAAFGIPILEMVDPGDRSLQAVILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E + SKYMS IKV +GG PI++ + LK I+G
Sbjct: 84 LAIQVAEEIRKLSKYMSKIKVLPIYGGQPIERQIKALKKGVQVIIG 129
>gi|319787050|ref|YP_004146525.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317465562|gb|ADV27294.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 458
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G D+L QA +G GKTA F L LQ+L+ +S LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILDGRDLLAQAPTGSGKTAAFGLGLLQRLDPAESRCQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ ++ R + + N+K+ V GG+ ++ L+ H+PQ+V
Sbjct: 86 VGRQLRRLATGIPNLKLSVLTGGMALEPQIASLEAHDPQVV 126
>gi|294666446|ref|ZP_06731689.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292603752|gb|EFF47160.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 458
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ R + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRRLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 458
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQQL+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQQLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 458
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ R + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRRLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|145548271|ref|XP_001459816.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427643|emb|CAK92419.1| unnamed protein product [Paramecium tetraurelia]
Length = 429
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T Q E + A+ G ++CQAK+G GKTAVFVL L + T + V LV+ HTRE
Sbjct: 51 FEHPTRVQAESLTNALQGEQLICQAKAGTGKTAVFVLTVLNTINTESNKVECLVITHTRE 110
Query: 94 LAFQISKEYERFSKYMSNIKVGVFF-GGLPIQKDEEYLKTHNPQIV 138
LA Q E+ R K+M NIKV F+ GG P+ + ++T PQI+
Sbjct: 111 LAQQARDEFLRLGKFMKNIKVECFYGGGEPVTVNISTIETVKPQII 156
>gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703]
gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
Length = 457
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ L+ N LV+C TRELA Q
Sbjct: 27 TPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHLDAGRFNTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTHNPQIV 138
++ E R ++YM NIKV GG+P IQ+D TH P I+
Sbjct: 87 VANELRRLARYMPNIKVLTLCGGVPFSIQRDS---LTHAPHII 126
>gi|256821842|ref|YP_003145805.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256795381|gb|ACV26037.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 460
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T Q + +PQ + G D++ QAK+G GKTAVF L L++L+ + +V +V+C TRE
Sbjct: 24 FERMTPIQADALPQVLEGKDVIAQAKTGSGKTAVFGLGILEKLDPKNFSVQSMVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ ++N+K+ GG P++ + LK H IV
Sbjct: 84 LAEQVAEEIRRLARPIANVKILTLCGGTPLRPQADSLK-HGAHIV 127
>gi|21954448|emb|CAD12672.1| putative RNA helicase [Hortaea werneckii]
Length = 111
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Query: 65 TAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ 124
TAVFV++TLQQ++ VLVMCHTRELAFQI EY RF+KYM +K VF+GG I+
Sbjct: 1 TAVFVISTLQQIDAVAGEAQVLVMCHTRELAFQIKNEYNRFTKYMPEVKTAVFYGGTDIK 60
Query: 125 KDEEYL--KTHNPQIV 138
++E+ L K +P I+
Sbjct: 61 ENEKVLANKETHPNII 76
>gi|444920089|ref|ZP_21239933.1| ATP-independent RNA helicase dbpA [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508956|gb|ELV09124.1| ATP-independent RNA helicase dbpA [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 461
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
++ T Q +P + G D+L QAK+G GKTA F + L+ ++ T LV+C TRE
Sbjct: 21 YQSTTPIQAAALPAILKGKDLLGQAKTGSGKTAAFGIGVLESIDVTRFATQALVICPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R ++Y+ N+K+ GG PI + + H P I
Sbjct: 81 LADQVSKELRRLARYIPNLKISSICGGTPIARQIHAMSQHPPHIA 125
>gi|33337643|gb|AAQ13472.1| BAT1 homolog [Crassostrea gigas]
Length = 123
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 43/54 (79%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV 87
F + QHECIPQA+L MD+LCQAKSGMGKTAVFVLATLQQLE D V VLV
Sbjct: 64 FEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLV 117
>gi|325928093|ref|ZP_08189306.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
gi|325541591|gb|EGD13120.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
Length = 458
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPAVTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|307131092|ref|YP_003883108.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
gi|306528621|gb|ADM98551.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
Length = 457
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQL+ N LV+C TRELA Q
Sbjct: 27 TPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQQLDAGQFNTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTHNPQIV 138
++ E R ++Y+ NIKV GG+P IQ+D H P I+
Sbjct: 87 VANELRRLARYLPNIKVLTLCGGVPFSIQRDS---LIHAPHII 126
>gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 458
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPAVTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|302392742|ref|YP_003828562.1| DEAD/DEAH box helicase [Acetohalobium arabaticum DSM 5501]
gi|302204819|gb|ADL13497.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
5501]
Length = 527
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E T Q E IP + G D++ QA++G GKTA F + L++++ D +V LV+C
Sbjct: 20 EDMGFEEATPIQTEAIPHLLAGKDVIGQAQTGTGKTAAFGIPILEKIDPDDKSVQALVLC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
TRELA Q+S+E R +KY IK +GG I++ + LK ++G
Sbjct: 80 PTRELAIQVSEEIGRLAKYKRKIKTLPVYGGQSIKRQIKALKKGVQIVIG 129
>gi|390992320|ref|ZP_10262557.1| ATP-independent RNA helicase DbpA [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372552936|emb|CCF69532.1| ATP-independent RNA helicase DbpA [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|325923904|ref|ZP_08185503.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
gi|325545614|gb|EGD16869.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|418516475|ref|ZP_13082648.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410706754|gb|EKQ65211.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|325916975|ref|ZP_08179217.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
gi|325536826|gb|EGD08580.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|418523092|ref|ZP_13089117.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410700362|gb|EKQ58921.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|381171471|ref|ZP_09880616.1| ATP-independent RNA helicase DbpA [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688106|emb|CCG37103.1| ATP-independent RNA helicase DbpA [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|21231720|ref|NP_637637.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768154|ref|YP_242916.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991291|ref|YP_001903301.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
campestris str. B100]
gi|21113422|gb|AAM41561.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573486|gb|AAY48896.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167733051|emb|CAP51249.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLLVLTGGMPLGPQLASLEAHDPQVV 126
>gi|384428186|ref|YP_005637545.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
gi|341937288|gb|AEL07427.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELAEQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLLVLTGGMPLGPQLASLEAHDPQVV 126
>gi|346725284|ref|YP_004851953.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346650031|gb|AEO42655.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 458
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPAVTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLDAHDPQVV 126
>gi|145520549|ref|XP_001446130.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413607|emb|CAK78733.1| unnamed protein product [Paramecium tetraurelia]
Length = 429
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T Q E + A+ G ++CQAK+G GKTAVFVL L + T + V LV+ HTRE
Sbjct: 51 FEHPTRVQAESLTNALQGEQLICQAKAGTGKTAVFVLTVLNTINTESNKVECLVITHTRE 110
Query: 94 LAFQISKEYERFSKYMSNIKVGVFF-GGLPIQKDEEYLKTHNPQIV 138
LA Q E+ R K+M +IKV F+ GG P+ + ++T PQIV
Sbjct: 111 LAQQARDEFLRLGKFMKSIKVECFYGGGEPVTVNISTIETVKPQIV 156
>gi|429964461|gb|ELA46459.1| hypothetical protein VCUG_02054 [Vavraia culicis 'floridensis']
Length = 401
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 8/109 (7%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY-------VLVMCH 90
++ Q + IP+AVLG DILCQAKSG GKT VFVL+ LQ++ + V+ V+ + +
Sbjct: 49 SAVQQQVIPKAVLGADILCQAKSGTGKTVVFVLSALQRISREEGEVHDTCARVQVVAIAN 108
Query: 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
T+E+ QI+ E++RF Y +++ V + FGG+ + D E LK +VG
Sbjct: 109 TKEMVVQIANEFKRFMCY-TDLNVEMVFGGVDVNGDIEKLKGRVDVVVG 156
>gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri
str. 306]
gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 458
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAHSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|395236209|ref|ZP_10414407.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. Ag1]
gi|394729061|gb|EJF29072.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. Ag1]
Length = 457
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRE
Sbjct: 23 YHEMTPVQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDASQFLTQSLVLCPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++KE R ++YM NIK+ GG P + L+ H P I+
Sbjct: 83 LADQVAKELRRLARYMPNIKILTLCGGQPFGVQRDSLQ-HAPHII 126
>gi|237806841|ref|YP_002891281.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499102|gb|ACQ91695.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 469
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 55/90 (61%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q + +P + G D+L QAK+G GKTA F L LQ L+ NV LV+C TRE
Sbjct: 33 YSEMTPIQAQSLPAVLQGKDVLAQAKTGSGKTAAFALGLLQGLDVKSLNVQGLVLCPTRE 92
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPI 123
LA Q++ E R ++ + N+KV GG+PI
Sbjct: 93 LADQVAGEIRRLARLIPNVKVLTLCGGMPI 122
>gi|114773657|ref|ZP_01450692.1| Superfamily II DNA and RNA helicase [Rhodobacterales bacterium
HTCC2255]
gi|114546127|gb|EAU49044.1| Superfamily II DNA and RNA helicase [alpha proteobacterium
HTCC2255]
Length = 457
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+L QAK+G GKTA F L LQ L+ T + + LV+C TRELA Q
Sbjct: 26 TDIQAATLPVVLKGEDVLAQAKTGSGKTAAFGLGILQSLDATRTYTHALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++++ ++ M N+K+ +GG+P+ LK H P I+
Sbjct: 86 VAEQLRLLARRMDNVKITTLYGGVPMNGQIATLK-HRPHII 125
>gi|380509796|ref|ZP_09853203.1| ATP-dependent RNA helicase DbpA [Xanthomonas sacchari NCPPB 4393]
Length = 458
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 60/105 (57%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q + +P + G D++ QA +G GKTA F L L +L+ S LV+C TRE
Sbjct: 22 YTRMTPVQAQSLPPILAGQDVIVQAPTGSGKTAAFGLGLLHKLDPALSRAQALVLCPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 82 LADQVGKQLRKLATGIPNMKLVVLTGGMPLAPQLASLEAHDPQVV 126
>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438001218|ref|YP_007270961.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter
acetatoxydans Re1]
gi|432178012|emb|CCP24985.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
Length = 529
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP G D++ QA++G GKTA F L L ++T D N +++C TRE
Sbjct: 24 FEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGLPILDMIDTDDKNQQAIILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E + SKY +K+ +GG PI++ LK I+G
Sbjct: 84 LAIQVAEELKALSKYKEGMKILPVYGGQPIERQIHALKRGVQIIIG 129
>gi|365838734|ref|ZP_09380072.1| ATP-independent RNA helicase DbpA [Hafnia alvei ATCC 51873]
gi|364559527|gb|EHM37510.1| ATP-independent RNA helicase DbpA [Hafnia alvei ATCC 51873]
Length = 459
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q +P + G D+ QAK+G GKTA F + LQQ++ T LV+C TRE
Sbjct: 23 YASMTPVQAAALPAILEGRDVRAQAKTGSGKTAAFGIGLLQQIDVTQFTTQALVLCPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG PI + L H P IV
Sbjct: 83 LADQVSKELRRLARFTQNIKILTLCGGQPISHQLDSL-VHAPHIV 126
>gi|317494076|ref|ZP_07952492.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917849|gb|EFV39192.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 459
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q +P + G D+ QAK+G GKTA F + LQQ++ T LV+C TRE
Sbjct: 23 YASMTPVQAAALPAILEGRDVRAQAKTGSGKTAAFGIGLLQQIDVTQFTTQALVLCPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG PI + L H P IV
Sbjct: 83 LADQVSKELRRLARFTQNIKILTLCGGQPISHQLDSL-VHAPHIV 126
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IPQ + G+D++ QA++G GKT F + ++ L+ + + VL++ TRE
Sbjct: 24 FEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIPAIEMLDPQNEGIQVLILSPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA QIS+E SKY IK+ +GG PI + LK PQI+ G +++
Sbjct: 84 LAIQISEELRDVSKYKEGIKILPVYGGQPIDRQIAALKKR-PQII------IGTPGRIMD 136
Query: 154 VMDVRSGGWWLDLEALILSKC 174
M R+ DL+ LIL +
Sbjct: 137 HMRRRTLKLA-DLKMLILDEA 156
>gi|384419065|ref|YP_005628425.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353461978|gb|AEQ96257.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 458
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 60/101 (59%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPIQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+P +V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPHVV 126
>gi|84624218|ref|YP_451590.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|161898981|ref|YP_201355.2| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|188576177|ref|YP_001913106.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84368158|dbj|BAE69316.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188520629|gb|ACD58574.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 458
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 60/101 (59%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 26 TPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+P +V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPHVV 126
>gi|58426933|gb|AAW75970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 482
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 60/101 (59%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G+D++ QA +G GKTA F L LQ+L+ + LV+C TRELA Q
Sbjct: 50 TPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQ 109
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+P +V
Sbjct: 110 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPHVV 150
>gi|237653132|ref|YP_002889446.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|237624379|gb|ACR01069.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 487
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+R T Q +P A+ G D++ QAK+G GKTA F L L +L+ V +V+C TRE
Sbjct: 50 YRAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALPLLARLDVRKLAVQAMVLCPTRE 109
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R +++ +NIKV GG P++ + L+ H +V
Sbjct: 110 LADQVTQEIRRLARFEANIKVLALCGGTPMRPQRDSLE-HGAHVV 153
>gi|406934671|gb|EKD68890.1| hypothetical protein ACD_47C00384G0003, partial [uncultured
bacterium]
Length = 637
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 20 NRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT 79
N EK R F E + Q E IP + G D++ QA++G GKTA F + L++++
Sbjct: 10 NISEKIQRAAADMGFEEASPIQAETIPILLAGRDLIGQAQTGTGKTAAFAIPILEKIDHE 69
Query: 80 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ LV+C TREL Q+++E+ R +KY N+ + +GG I + + LK PQIV
Sbjct: 70 TKELQALVLCPTRELVIQVTEEFRRLTKYFFNLAIVPVYGGQEIDRQIDALK-RKPQIV 127
>gi|51245828|ref|YP_065712.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
gi|50876865|emb|CAG36705.1| probable ATP-independent RNA helicase (DbpA) [Desulfotalea
psychrophila LSv54]
Length = 469
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q E +P + G D+L QAK+G GKTA F + L L+ + V LVMC TRE
Sbjct: 22 YHEMTPIQAESLPHVLEGEDLLAQAKTGSGKTAAFGIGLLHNLDVSLFRVQTLVMCPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYET 145
LA Q++ E R +++ NIK+ GG+PI+ L+ +VG L
Sbjct: 82 LAEQVAGELRRIARFKHNIKITTLCGGMPIKPQLASLEHQAHIVVGTPGRIEQHLKRESL 141
Query: 146 NLSGVVVNVMD 156
NL V V+D
Sbjct: 142 NLDHVTTLVLD 152
>gi|336392377|ref|ZP_08573776.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 515
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91
Q F E T Q E IP AV G+D++ QA++G GKTA F LA LQ+++ + NV L++ T
Sbjct: 19 QGFEEATPIQAETIPLAVTGVDVIGQAQTGTGKTAAFGLAILQKIDLENPNVQALIISPT 78
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
RELA Q +E R + +KV +GG I + LK H PQI+
Sbjct: 79 RELAVQTQEELYRLGQD-KKVKVQAVYGGADIGRQIRSLKDH-PQII 123
>gi|428180839|gb|EKX49705.1| hypothetical protein GUITHDRAFT_135872 [Guillardia theta CCMP2712]
Length = 372
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
+ Q IP +G+D++ QAKSG GKT VF + LQ L + V LV+ HTRELA+Q
Sbjct: 93 SPVQLRAIPLGNMGLDLIVQAKSGTGKTCVFAVIILQSLSLNFNGVQALVLSHTRELAYQ 152
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT 132
+++MS I+ F GGLP +KD E LK+
Sbjct: 153 TRDVIRSVARFMSGIRCEAFVGGLPTEKDIEKLKS 187
>gi|389808857|ref|ZP_10204993.1| ATP-dependent RNA helicase DbpA [Rhodanobacter thiooxydans LCS2]
gi|388442440|gb|EIL98636.1| ATP-dependent RNA helicase DbpA [Rhodanobacter thiooxydans LCS2]
Length = 459
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q + +P + G D++ QA++G GKTA F LA LQ L+ + LV+C TRE
Sbjct: 22 YAEMTPVQAQSLPPMLQGRDVIAQAQTGSGKTAAFGLALLQALDVDTIRLQALVLCPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SK + + + N+K+ GG+P+ L TH+P IV
Sbjct: 82 LADQVSKAIRKLAANIPNVKLLTLCGGMPLGPQLASL-THDPHIV 125
>gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase [Methanobacterium sp. AL-21]
gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
Length = 529
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 66/113 (58%)
Query: 27 RIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 86
R E F E T Q IP + G D+ QA++G GKTA F + L+ ++ ++ ++ +
Sbjct: 17 RAVEDMGFEEATPIQSLAIPHVLEGKDVTGQAQTGTGKTAAFGIPILETVDPSNRDLQAV 76
Query: 87 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
++C TRELA Q+++E ++ SKYM I + +GG PI++ + LK I+G
Sbjct: 77 ILCPTRELAIQVAEEMKKLSKYMRKIGILPVYGGQPIERQIKALKKGVQIIIG 129
>gi|422014452|ref|ZP_16361063.1| ATP-dependent RNA helicase DbpA [Providencia burhodogranariea DSM
19968]
gi|414100896|gb|EKT62505.1| ATP-dependent RNA helicase DbpA [Providencia burhodogranariea DSM
19968]
Length = 457
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ N LV+C TRELA Q
Sbjct: 27 TPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAKQFNTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTH 133
++ E R ++YM NIK+ GG+P IQ+D H
Sbjct: 87 VASELRRLARYMPNIKILTLCGGVPFSIQRDSLIHAAH 124
>gi|410624384|ref|ZP_11335183.1| ATP-independent RNA helicase DbpA [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410156106|dbj|GAC30557.1| ATP-independent RNA helicase DbpA [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 474
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + T Q C+P + G D+ QAK+G GKT F LA L +++ N L+MC TRE
Sbjct: 34 FTQMTQTQQACLPDVLAGADVAVQAKTGSGKTLAFGLALLSKIDVEAKNPQSLIMCPTRE 93
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++++ +K MSN+KV GG+P+ PQI+ L + G
Sbjct: 94 LAEQVAEQIRLLAKRMSNLKVVSLVGGMPM----------GPQIISLRYGANVVVGTPGR 143
Query: 154 VMD 156
+MD
Sbjct: 144 IMD 146
>gi|398332265|ref|ZP_10516970.1| ATP-dependent RNA helicase [Leptospira alexanderi serovar Manhao 3
str. L 60]
Length = 516
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALR-KNPQIV 127
>gi|359729283|ref|ZP_09267979.1| ATP-dependent RNA helicase [Leptospira weilii str. 2006001855]
Length = 535
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 46 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 105
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ + L+ NPQIV
Sbjct: 106 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRK-NPQIV 149
>gi|254195234|ref|ZP_04901662.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei S13]
gi|169651981|gb|EDS84674.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei S13]
Length = 465
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+T +V LV+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRRFDVQALVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|338210794|ref|YP_004654843.1| DEAD/DEAH box helicase [Runella slithyformis DSM 19594]
gi|336304609|gb|AEI47711.1| DEAD/DEAH box helicase domain protein [Runella slithyformis DSM
19594]
Length = 570
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + + Q E IP + G D+L QA++G GKTA F + L++++ +D VL++C TRE
Sbjct: 23 FTKPSPIQAEAIPSLLEGRDVLGQAQTGTGKTAAFGIPALEKVDISDKRTQVLMLCPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R +KY +K+ +GG I++ LK +VG
Sbjct: 83 LAVQVTEELRRIAKYKKGLKLETVYGGDSIERQIRSLKIGAQIVVG 128
>gi|417777782|ref|ZP_12425596.1| DEAD/DEAH box helicase [Leptospira weilii str. 2006001853]
gi|410782079|gb|EKR66644.1| DEAD/DEAH box helicase [Leptospira weilii str. 2006001853]
Length = 513
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRK-NPQIV 127
>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
Length = 538
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 64/106 (60%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G D++ QA++G GKTA F + L++++ D ++ +V+C TRE
Sbjct: 24 FEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPILEKIDPNDRSLQAIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+S+E + +KYM IK +GG PI + + LK I+G
Sbjct: 84 LAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQIKALKGGVQVIIG 129
>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
Length = 474
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D++ +AK+G GKTA F + L L+ T S V LV+C TRE
Sbjct: 35 YAEMTPIQAHSLPLILAGKDVIAKAKTGSGKTAAFGIGLLSHLDATSSRVQALVLCPTRE 94
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP 122
LA Q+ KE R +++ NIKV GG+P
Sbjct: 95 LADQVGKELRRLARFTDNIKVLTLCGGVP 123
>gi|365848212|ref|ZP_09388690.1| ATP-independent RNA helicase DbpA [Yokenella regensburgei ATCC
43003]
gi|364571174|gb|EHM48768.1| ATP-independent RNA helicase DbpA [Yokenella regensburgei ATCC
43003]
Length = 460
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRE
Sbjct: 26 YHSMTPVQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDASQFLTQSLVLCPTRE 85
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++KE R ++YM NIK+ GG P + L+ H P I+
Sbjct: 86 LADQVAKELRRLARYMPNIKILTLCGGQPFGIQRDSLQ-HAPHII 129
>gi|359690200|ref|ZP_09260201.1| ATP-dependent RNA helicase [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418751003|ref|ZP_13307289.1| DEAD/DEAH box helicase [Leptospira licerasiae str. MMD4847]
gi|418758776|ref|ZP_13314958.1| DEAD/DEAH box helicase family / helicase C-terminal domain
multi-domain protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384114678|gb|EIE00941.1| DEAD/DEAH box helicase family / helicase C-terminal domain
multi-domain protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404273606|gb|EJZ40926.1| DEAD/DEAH box helicase [Leptospira licerasiae str. MMD4847]
Length = 512
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 13/154 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E +S Q E IP + G D++ +++G GKTA F + +L+ LE + + VLV+C TRE
Sbjct: 25 FTEPSSIQSESIPLILSGRDVIGHSRTGTGKTAAFAIPSLEILEEGEQSPQVLVLCPTRE 84
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETN------- 146
L Q+++E+ + KY + +V +GG I K + LK IVG +
Sbjct: 85 LVVQVAEEFRKLGKYKEDFQVAAIYGGDDITKQFKALKRKPQVIVGTPGRTMDHMDRKTL 144
Query: 147 -LSGVVVNVMD----VRSGGWWLDLEALILSKCA 175
LSG+ + ++D + G+ D+E +IL+K
Sbjct: 145 VLSGIKMVILDEADEMLDMGFLEDME-IILAKVP 177
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP A+ G+D++ QA++G GKTA F + + ++ET+ S + LVMC TRE
Sbjct: 22 FEEATPIQEKTIPLAMQGLDLIGQAQTGTGKTAAFSIPLIHKIETSQSKIVALVMCPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E E+ ++ I+ +GG I K LK PQI+
Sbjct: 82 LAIQVAEEIEKLGRF-KGIRSLPIYGGQDIVKQIRALKKR-PQII 124
>gi|377579040|ref|ZP_09808013.1| ATP-independent RNA helicase DbpA [Escherichia hermannii NBRC
105704]
gi|377539689|dbj|GAB53178.1| ATP-independent RNA helicase DbpA [Escherichia hermannii NBRC
105704]
Length = 459
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 11 VTVKVLSSRNRREKE-----DRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKT 65
+TV S+ N E D +G ++ T Q +P + G D+ QAK+G GKT
Sbjct: 1 MTVTAFSTLNALPAELLANLDELG----YQTMTPVQAAALPAILAGKDVRAQAKTGSGKT 56
Query: 66 AVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQK 125
A F L LQ ++ + LV+C TRELA Q++KE R ++Y+ NIKV GG P
Sbjct: 57 AAFGLGLLQHIDASRFITQSLVLCPTRELADQVAKELRRLARYLPNIKVLTLCGGQPFGA 116
Query: 126 DEEYLKTHNPQIV 138
+ L+ H P I+
Sbjct: 117 QRDSLQ-HAPHII 128
>gi|410938346|ref|ZP_11370199.1| DEAD/DEAH box helicase [Leptospira noguchii str. 2006001870]
gi|410786575|gb|EKR75513.1| DEAD/DEAH box helicase [Leptospira noguchii str. 2006001870]
Length = 513
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKYKGNFEVVPIYGGQEIERQFRALRK-NPQIV 127
>gi|251789631|ref|YP_003004352.1| ATP-dependent RNA helicase DbpA [Dickeya zeae Ech1591]
gi|247538252|gb|ACT06873.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
Length = 457
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ L+ N LV+C TRELA Q
Sbjct: 27 TPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHLDAGRFNTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++ M NIKV GG+P + L TH P ++
Sbjct: 87 VANELRRLARGMPNIKVLTLCGGVPFGLQRDSL-THAPHVI 126
>gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 467
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+T + V +V+C TRE
Sbjct: 29 YVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRNFAVQAMVLCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ L+ H IV
Sbjct: 89 LADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLE-HGAHIV 132
>gi|421099117|ref|ZP_15559777.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200901122]
gi|410797851|gb|EKR99950.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200901122]
Length = 513
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLRALR-KNPQIV 127
>gi|456971409|gb|EMG12025.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 523
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRK-NPQIV 127
>gi|418710177|ref|ZP_13270959.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410769635|gb|EKR44866.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 516
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRK-NPQIV 127
>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
16795]
gi|164603369|gb|EDQ96834.1| DEAD/DEAH box helicase [Clostridium bartlettii DSM 16795]
Length = 541
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G D++ QA++G GKTA F + L++++ + ++ +V+C TRE
Sbjct: 24 FEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSIPILEKVDPNNKHLQAIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+SKE + K+ S IK +GG PI + + LK+ ++G
Sbjct: 84 LAIQVSKEIRKLGKFKSGIKTLPVYGGQPIDRQIKALKSGVQVVIG 129
>gi|45659052|ref|YP_003138.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45602298|gb|AAS71775.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 521
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 29 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ L+ NPQIV
Sbjct: 89 LVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRK-NPQIV 132
>gi|417767783|ref|ZP_12415719.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|417771330|ref|ZP_12419225.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418683423|ref|ZP_13244628.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692066|ref|ZP_13253147.1| DEAD/DEAH box helicase [Leptospira interrogans str. FPW2026]
gi|418704680|ref|ZP_13265548.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418715605|ref|ZP_13275726.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 08452]
gi|418728985|ref|ZP_13287554.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 12758]
gi|421117665|ref|ZP_15578023.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|421125072|ref|ZP_15585328.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135493|ref|ZP_15595614.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|400324996|gb|EJO77280.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400349801|gb|EJP02089.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400358129|gb|EJP14245.1| DEAD/DEAH box helicase [Leptospira interrogans str. FPW2026]
gi|409946527|gb|EKN96536.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|410010782|gb|EKO68915.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410020157|gb|EKO86961.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410437368|gb|EKP86468.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410765628|gb|EKR36327.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410776388|gb|EKR56367.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 12758]
gi|410788506|gb|EKR82224.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 08452]
gi|455667070|gb|EMF32431.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 516
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRK-NPQIV 127
>gi|294828452|ref|NP_714230.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
56601]
gi|386075655|ref|YP_005989975.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
IPAV]
gi|417761735|ref|ZP_12409740.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000624]
gi|417772943|ref|ZP_12420829.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000621]
gi|417786009|ref|ZP_12433706.1| DEAD/DEAH box helicase [Leptospira interrogans str. C10069]
gi|418667264|ref|ZP_13228676.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|418670922|ref|ZP_13232283.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000623]
gi|418702416|ref|ZP_13263324.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Bataviae
str. L1111]
gi|418727173|ref|ZP_13285768.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 12621]
gi|421083601|ref|ZP_15544475.1| DEAD/DEAH box helicase [Leptospira santarosai str. HAI1594]
gi|421101495|ref|ZP_15562107.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421121759|ref|ZP_15582049.1| DEAD/DEAH box helicase [Leptospira interrogans str. Brem 329]
gi|293386306|gb|AAN51248.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
56601]
gi|353459447|gb|AER03992.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
IPAV]
gi|409942468|gb|EKN88080.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000624]
gi|409950838|gb|EKO05360.1| DEAD/DEAH box helicase [Leptospira interrogans str. C10069]
gi|409959414|gb|EKO23184.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 12621]
gi|410345096|gb|EKO96215.1| DEAD/DEAH box helicase [Leptospira interrogans str. Brem 329]
gi|410368667|gb|EKP24043.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433962|gb|EKP78299.1| DEAD/DEAH box helicase [Leptospira santarosai str. HAI1594]
gi|410577278|gb|EKQ40274.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000621]
gi|410582080|gb|EKQ49880.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000623]
gi|410756867|gb|EKR18485.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|410758585|gb|EKR24814.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Bataviae
str. L1111]
gi|455788315|gb|EMF40307.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lora str. TE
1992]
gi|456823568|gb|EMF72005.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Canicola
str. LT1962]
gi|456984487|gb|EMG20533.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 516
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRK-NPQIV 127
>gi|288818118|ref|YP_003432466.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
gi|384128882|ref|YP_005511495.1| DEAD/DEAH box helicase [Hydrogenobacter thermophilus TK-6]
gi|288787518|dbj|BAI69265.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
gi|308751719|gb|ADO45202.1| DEAD/DEAH box helicase domain protein [Hydrogenobacter thermophilus
TK-6]
Length = 365
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q E IP A+ G DI+ QA +G GKTA F + ++++ + D + LV+ TRE
Sbjct: 21 YEEPTPIQKEAIPLALKGYDIMGQAATGTGKTAAFGIPIVEKI-SKDDGLKALVLTPTRE 79
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+ ++ SKY + +KV VF+GG P+++D E L P IV
Sbjct: 80 LALQVKEQLYALSKYKA-LKVFVFYGGTPVRRDLELLSKVVPNIV 123
>gi|374851362|dbj|BAL54324.1| DEAD/DEAH box helicase domain protein [uncultured Aquificae
bacterium]
Length = 365
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 17/151 (11%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q E IP A+ G DI+ QA +G GKTA F + ++++ + D + LV+ TRE
Sbjct: 21 YEEPTPIQKEAIPLALKGYDIMGQAATGTGKTAAFGIPIVEKI-SKDDGLKALVLTPTRE 79
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV-------------GL 140
LA Q+ ++ SKY + +KV VF+GG P+++D E L P IV G+
Sbjct: 80 LALQVKEQLYALSKYKA-LKVFVFYGGTPVRRDLELLSKVVPNIVIGTPGRIKDLLSRGV 138
Query: 141 VNYETNLSGVVVNVMDVR-SGGWWLDLEALI 170
+N N+S +V++ D+ G+ D+E++I
Sbjct: 139 LNL-GNVSFLVLDEADLMLDMGFVEDIESII 168
>gi|372272168|ref|ZP_09508216.1| ATP-dependent RNA helicase DbpA [Marinobacterium stanieri S30]
Length = 458
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES + + T Q + +P + G D++ Q K+G GKTA F + LQQL+ T V LV+C
Sbjct: 20 ESLEYAQMTPIQQDSLPVILQGRDLIAQGKTGSGKTAAFGIGLLQQLDNTSFQVQSLVLC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 123
TRELA Q+++E R ++ + N+KV GG+P+
Sbjct: 80 PTRELADQVAQELRRLARQIPNVKVLTLCGGMPL 113
>gi|406668916|ref|ZP_11076207.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
gi|405585197|gb|EKB59032.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
Length = 547
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP A+ G D++ QA++G GKTA F + L+ L+ ++ + L++ TRE
Sbjct: 21 FEELTPIQRDAIPIALTGDDLIGQAQTGTGKTAAFGIPMLEHLDLSNRTIQGLIIAPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+ +E R+ K + KV +GG PI K E LK +NPQI+
Sbjct: 81 LAIQVQEELYRYGKLL-KAKVYSVYGGTPIGKQIERLKRYNPQII 124
>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 590
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + + Q + IP + G D++ QA++G GKTA F + L++++T+ + V L++C TRE
Sbjct: 27 FEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLERIDTSSNAVQALILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+S+E R SK+M +++ +GG I + LK +VG
Sbjct: 87 LAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKKGVHIVVG 132
>gi|422022629|ref|ZP_16369136.1| ATP-dependent RNA helicase DbpA [Providencia sneebia DSM 19967]
gi|414095799|gb|EKT57459.1| ATP-dependent RNA helicase DbpA [Providencia sneebia DSM 19967]
Length = 458
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ N LV+C TRELA Q
Sbjct: 27 TPIQEAALPAILNGKDVRAQAKTGSGKTAAFGLGLLQHIDAKKFNTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTH 133
++ E R ++YM NIK+ GG+P IQ+D H
Sbjct: 87 VASELRRLARYMPNIKILTVCGGVPFSIQRDSLIHAAH 124
>gi|418693853|ref|ZP_13254902.1| DEAD/DEAH box helicase [Leptospira kirschneri str. H1]
gi|421105887|ref|ZP_15566463.1| DEAD/DEAH box helicase [Leptospira kirschneri str. H2]
gi|409958430|gb|EKO17322.1| DEAD/DEAH box helicase [Leptospira kirschneri str. H1]
gi|410008609|gb|EKO62269.1| DEAD/DEAH box helicase [Leptospira kirschneri str. H2]
Length = 519
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSESIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRK-NPQIV 127
>gi|282600167|ref|ZP_05973223.2| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
4541]
gi|282566628|gb|EFB72163.1| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
4541]
Length = 476
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 4 MFGMFHGVTVKVLSSRNRREKEDRIGESQ-PFREQTSFQHECIPQAVLGMDILCQAKSGM 62
+F +F +TV + N E ++ F T Q +P + G D+ QAK+G
Sbjct: 11 IFNLFGMLTVTSFAELNALPSEQLSNLNELGFLTMTPIQEAALPAILAGQDVRAQAKTGS 70
Query: 63 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 122
GKTA F L LQ ++ + N LV+C TRELA Q++ E R ++Y+ N+K+ GG+P
Sbjct: 71 GKTAAFGLGLLQHIDAKNFNTQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVP 130
Query: 123 --IQKDEEYLKTH 133
+Q+D H
Sbjct: 131 FSVQRDSLAHAAH 143
>gi|259908378|ref|YP_002648734.1| ATP-dependent RNA helicase DbpA [Erwinia pyrifoliae Ep1/96]
gi|387871233|ref|YP_005802606.1| ATP-dependent RNA helicase dbpA [Erwinia pyrifoliae DSM 12163]
gi|224964000|emb|CAX55505.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283478319|emb|CAY74235.1| ATP-dependent RNA helicase dbpA [Erwinia pyrifoliae DSM 12163]
Length = 459
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q E +P + G D+ QAK+G GKTA F L + +++ + LV+C TRELA Q
Sbjct: 27 TPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++KE R +++ SNIK+ GG P+ + L H P IV
Sbjct: 87 VTKELRRLARFTSNIKILTLCGGQPVGAQRDSL-LHAPHIV 126
>gi|114778501|ref|ZP_01453345.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
ferrooxydans PV-1]
gi|114551226|gb|EAU53785.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
ferrooxydans PV-1]
Length = 459
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q + +P + G D++ Q ++G GKTA F L LQ+L+ T +V LV+C TRE
Sbjct: 24 YEAMTPIQQQSLPDILAGRDVIAQGQTGSGKTAAFGLGLLQKLDITKPHVQSLVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP 122
LA Q++KE + ++ ++NIKV GG+P
Sbjct: 84 LADQVAKEIRKLARKLANIKVLTLCGGMP 112
>gi|312172469|emb|CBX80726.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ATCC BAA-2158]
Length = 459
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q E +P + G D+ QAK+G GKTA F L + +++ + LV+C TRELA Q
Sbjct: 27 TPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++KE R +++ SNIK+ GG P+ + L H P IV
Sbjct: 87 VTKELRRLARFTSNIKILTLCGGQPVGAQRDSL-LHAPHIV 126
>gi|440731012|ref|ZP_20911059.1| ATP-dependent RNA helicase DbpA, partial [Xanthomonas translucens
DAR61454]
gi|440375413|gb|ELQ12122.1| ATP-dependent RNA helicase DbpA, partial [Xanthomonas translucens
DAR61454]
Length = 353
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G D++ QA +G GKTA F L L +L+ + LV+C TRELA Q
Sbjct: 26 TPVQAQSLPPILAGSDVIVQAPTGSGKTAAFGLGLLHKLDPALTRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + + N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPQVV 126
>gi|398340413|ref|ZP_10525116.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Bim str.
1051]
gi|418679063|ref|ZP_13240328.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418685350|ref|ZP_13246526.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|418740862|ref|ZP_13297238.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421089722|ref|ZP_15550526.1| DEAD/DEAH box helicase [Leptospira kirschneri str. 200802841]
gi|421131655|ref|ZP_15591835.1| DEAD/DEAH box helicase [Leptospira kirschneri str. 2008720114]
gi|400320478|gb|EJO68347.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001546|gb|EKO52142.1| DEAD/DEAH box helicase [Leptospira kirschneri str. 200802841]
gi|410357029|gb|EKP04314.1| DEAD/DEAH box helicase [Leptospira kirschneri str. 2008720114]
gi|410739958|gb|EKQ84680.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|410751457|gb|EKR08434.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 513
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLELESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRK-NPQIV 127
>gi|385788426|ref|YP_005819535.1| ATP-dependent RNA helicase DbpA [Erwinia sp. Ejp617]
gi|310767698|gb|ADP12648.1| ATP-dependent RNA helicase DbpA [Erwinia sp. Ejp617]
Length = 459
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q E +P + G D+ QAK+G GKTA F L + +++ + LV+C TRELA Q
Sbjct: 27 TPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++KE R +++ SNIK+ GG P+ + L H P IV
Sbjct: 87 VTKELRRLARFTSNIKILTLCGGQPVGAQRDSL-LHAPHIV 126
>gi|292488330|ref|YP_003531212.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
gi|292899529|ref|YP_003538898.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428785271|ref|ZP_19002762.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ACW56400]
gi|291199377|emb|CBJ46494.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
gi|291553759|emb|CBA20804.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
gi|426276833|gb|EKV54560.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ACW56400]
Length = 459
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q E +P + G D+ QAK+G GKTA F L + +++ + LV+C TRELA Q
Sbjct: 27 TPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++KE R +++ SNIK+ GG P+ + L H P IV
Sbjct: 87 VTKELRRLARFTSNIKILTLCGGQPVGAQRDSL-LHAPHIV 126
>gi|285017902|ref|YP_003375613.1| ATP-independent RNA helicase [Xanthomonas albilineans GPE PC73]
gi|283473120|emb|CBA15626.1| probable atp-independent rna helicase protein [Xanthomonas
albilineans GPE PC73]
Length = 458
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G D++ QA +G GKTA F L L +L+ LV+C TRELA Q
Sbjct: 26 TPVQAQSLPPILAGHDVIVQAPTGSGKTAAFGLGLLHKLDPALVRAQALVLCPTRELADQ 85
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ K+ + + ++N+K+ V GG+P+ L+ H+PQ+V
Sbjct: 86 VGKQVRKLATGIANMKLVVLTGGMPLAPQLASLEAHDPQVV 126
>gi|410053369|ref|XP_001171822.3| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 6 [Pan
troglodytes]
Length = 600
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 41/50 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV 83
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V
Sbjct: 192 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQV 241
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 34/41 (82%)
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 312 ISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 352
>gi|402570128|ref|YP_006619472.1| ATP-dependent RNA helicase DbpA [Burkholderia cepacia GG4]
gi|402251325|gb|AFQ51778.1| ATP-dependent RNA helicase DbpA [Burkholderia cepacia GG4]
Length = 465
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+T +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDTRSFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV 130
>gi|333394485|ref|ZP_08476304.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145287|ref|ZP_14652757.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403063|gb|EJN56338.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 515
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91
Q F E T Q E IP A+ G+D++ QA++G GKTA F LA LQ+++ + NV L++ T
Sbjct: 19 QGFEEATPIQAETIPLALTGVDVIGQAQTGTGKTAAFGLAILQKIDLENPNVQALIISPT 78
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
RELA Q +E R + +KV +GG I + LK H PQI+
Sbjct: 79 RELAVQTQEELYRLGQD-KKVKVQAVYGGADIGRQIRSLKDH-PQII 123
>gi|330819324|ref|YP_004348186.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
gi|327371319|gb|AEA62674.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
Length = 465
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 28 YTEMTPIQAASLPLALAGQDLIAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ L+ H IV
Sbjct: 88 LADQVAQEIRRLARAEENIKVLTLCGGTPMRPQAASLE-HGAHIV 131
>gi|172062287|ref|YP_001809938.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria MC40-6]
gi|171994804|gb|ACB65722.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 465
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+T +V +V+C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV 130
>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 656
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q IPQ + G D+ QA++G GKTA F + +++L+ + NV LV+ TRE
Sbjct: 25 FEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQALVLSPTRE 84
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
LA Q ++E+ R KY + V +GG PI++ LK
Sbjct: 85 LAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALK 122
>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 538
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 16/151 (10%)
Query: 26 DRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYV 85
+ IG +P + Q E IP + G DI+ QA++G GKTA F+L L++++ + NV
Sbjct: 20 EEIGYVKP----SPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPILEKIDPKNKNVQA 75
Query: 86 LVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYET 145
LV+C TRELA Q+ +E ++FS+ ++ + +GG ++++PQI L
Sbjct: 76 LVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGG----------QSYDPQIRALKKGVQ 125
Query: 146 NLSGVVVNVMD-VRSGGWWL-DLEALILSKC 174
+ G VMD +R G L +L+ L+L +
Sbjct: 126 IVVGTPGRVMDHMRRGTLKLENLKMLVLDEA 156
>gi|422017337|ref|ZP_16363902.1| ATP-dependent RNA helicase DbpA [Providencia alcalifaciens Dmel2]
gi|414105487|gb|EKT67044.1| ATP-dependent RNA helicase DbpA [Providencia alcalifaciens Dmel2]
Length = 457
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T Q +P + G D+ QAK+G GKTA F L LQ+++ + N LV+C TRE
Sbjct: 23 FITMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKNFNTQSLVLCPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTH 133
LA Q++ E R ++Y+ N+K+ GG+P +Q+D H
Sbjct: 83 LADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSLVHAAH 124
>gi|397165606|ref|ZP_10489055.1| ATP-independent RNA helicase dbpA [Enterobacter radicincitans DSM
16656]
gi|396092888|gb|EJI90449.1| ATP-independent RNA helicase dbpA [Enterobacter radicincitans DSM
16656]
Length = 456
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + L++C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHIDASRFQTQSLILCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++YM NIKV GG P + L+ H P I+
Sbjct: 87 VASELRRLARYMPNIKVLTLCGGQPFGAQRDSLQ-HAPHII 126
>gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 502
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90
S F E T Q E IP + G D++ QA++G GKTA F L LQ L+ + NV L++
Sbjct: 18 SSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPILQHLDFNNPNVQALIISP 77
Query: 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q +E R K KV V +GG I++ LK+H PQI+
Sbjct: 78 TRELAIQTQEEVYRLGKD-EKAKVQVVYGGADIRRQINSLKSH-PQII 123
>gi|389870777|ref|YP_006378196.1| ATP-dependent RNA helicase DbpA [Advenella kashmirensis WT001]
gi|388536026|gb|AFK61214.1| ATP-dependent RNA helicase DbpA [Advenella kashmirensis WT001]
Length = 466
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F+ T Q +P + G D+L QAK+G GKT F L LQ+L LV+C TRE
Sbjct: 30 FQTMTPIQSASLPAVLEGRDVLAQAKTGSGKTLAFALGLLQRLNPAYFGCQALVLCPTRE 89
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV--------GLVNYET 145
LA Q+++E + ++ + NIKV +GG ++ E L+ H IV LV+ +
Sbjct: 90 LAEQVAQEVRKLARALGNIKVLALYGGTALKPQAESLQ-HGAHIVVGTPGRVLDLVDRDV 148
Query: 146 -NLSGVVVNVMD 156
NLS V V V+D
Sbjct: 149 LNLSAVKVLVLD 160
>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
Length = 526
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP+ + G DI+ QA++G GKTA F + LQ+++ + +V +V+C TRE
Sbjct: 24 FEEATPIQAKAIPEVMTGQDIIGQAQTGTGKTASFGIPMLQKVDPKNKHVQAIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q + E + +K+M IKV +GG I K LKT ++G
Sbjct: 84 LAIQSADEIRKLAKFMHGIKVLPIYGGQDIVKQIRSLKTGVQVLIG 129
>gi|115359843|ref|YP_776981.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
gi|115285131|gb|ABI90647.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
Length = 465
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+T +V +V+C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV 130
>gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
ATCC 8290]
gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
ATCC 8290]
Length = 502
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90
S F E T Q E IP + G D++ QA++G GKTA F L LQ L+ + NV L++
Sbjct: 18 SSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPILQHLDFNNPNVQALIISP 77
Query: 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q +E R K KV V +GG I++ LK+H PQI+
Sbjct: 78 TRELAIQTQEEVYRLGKD-EKAKVQVVYGGADIRRQINSLKSH-PQII 123
>gi|383813906|ref|ZP_09969329.1| ATP-dependent RNA helicase DbpA [Serratia sp. M24T3]
gi|383297104|gb|EIC85415.1| ATP-dependent RNA helicase DbpA [Serratia sp. M24T3]
Length = 460
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P +LG D+ +AK+G GKTA F + L ++ +D LV+C TRE
Sbjct: 24 YAQMTPIQEASLPAILLGQDVRAKAKTGSGKTAAFGIGLLDKITVSDFFCQSLVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG PI + L H P IV
Sbjct: 84 LADQVSKELRRLARFTQNIKILTLCGGQPIAPQLDSL-VHQPHIV 127
>gi|170696968|ref|ZP_02888064.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170138142|gb|EDT06374.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 465
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+T +V +V+C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV 130
>gi|389759423|ref|ZP_10191769.1| ATP-dependent RNA helicase DbpA [Rhodanobacter sp. 115]
gi|388430465|gb|EIL87631.1| ATP-dependent RNA helicase DbpA [Rhodanobacter sp. 115]
Length = 459
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E+ + E T Q +P + G D++ QA++G GKTA F L LQ L+ + LV+C
Sbjct: 18 ETLGYAEMTPVQAHSLPPLLAGRDVIAQAQTGSGKTAAFGLGLLQALDADTIRLQALVLC 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q+SK + + + N+K+ GG+P+ L TH+P IV
Sbjct: 78 PTRELADQVSKAIRKLAANIPNVKLLTLCGGMPLGPQLASL-THDPHIV 125
>gi|212710051|ref|ZP_03318179.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
30120]
gi|212687258|gb|EEB46786.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
30120]
Length = 468
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T Q +P + G D+ QAK+G GKTA F L LQ+++ + N LV+C TRE
Sbjct: 34 FITMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKNFNTQSLVLCPTRE 93
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTH 133
LA Q++ E R ++Y+ N+K+ GG+P +Q+D H
Sbjct: 94 LADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSLVHAAH 135
>gi|171315596|ref|ZP_02904831.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171099267|gb|EDT44026.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 465
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+T +V +V+C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV 130
>gi|350563003|ref|ZP_08931826.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
gi|349779869|gb|EGZ34210.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
Length = 467
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 8/131 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + TS Q + +P + G D++ Q+K+G GKTA F L LQQL++ D + LV+C TRE
Sbjct: 28 YHQPTSIQTQSLPIILAGEDLIAQSKTGSGKTAAFGLGLLQQLDSKDFTIQGLVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYET 145
LA Q+++E R ++ M N+KV GG + + L+ IVG L
Sbjct: 88 LADQVAEEIRRLARQMPNVKVLTLCGGSNLAAQQSSLQQGAHIIVGTPGRIEEHLRQQTL 147
Query: 146 NLSGVVVNVMD 156
+LSG+ V+D
Sbjct: 148 SLSGLKTLVLD 158
>gi|94314203|ref|YP_587412.1| ATP-dependent RNA helicase DbpA [Cupriavidus metallidurans CH34]
gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus
metallidurans CH34]
Length = 467
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QA++G GKTA F L+ L +L+ +V LV+C TRELA Q
Sbjct: 31 TPIQAASLPLALAGHDLIAQARTGSGKTAAFALSLLHRLDPRPLDVQALVLCPTRELADQ 90
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+++E R ++ N+KV GG PI+ E L H +V
Sbjct: 91 VTQEIRRLARAEDNVKVLTLSGGTPIRPQVESL-VHGAHVV 130
>gi|334144304|ref|YP_004537460.1| DEAD/DEAH box helicase domain-containing protein
[Thioalkalimicrobium cyclicum ALM1]
gi|333965215|gb|AEG31981.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 464
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES + QT Q + +P + G D++ Q K+G GKTA F L L QL++ + N+ +V+C
Sbjct: 24 ESLGYLHQTEIQAQSLPPILAGQDVIAQGKTGSGKTAAFGLGLLNQLDSKNFNIQAMVLC 83
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGL 121
TRELA Q+++E R ++ + NIKV GG+
Sbjct: 84 PTRELADQVAEEIRRLARRLPNIKVMTLCGGM 115
>gi|386812364|ref|ZP_10099589.1| RNA helicase [planctomycete KSU-1]
gi|386404634|dbj|GAB62470.1| RNA helicase [planctomycete KSU-1]
Length = 568
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 65/106 (61%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q++ IP + G DI+ QA++G GKTA F + TL+ ++ + +++C TRE
Sbjct: 45 FEEATPIQYQAIPYILKGKDIIGQAQTGTGKTAAFGIPTLEMIDPGTRELQAIILCPTRE 104
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E ++ SKY I++ +GG PI++ + LK I+G
Sbjct: 105 LAIQVAEEMKKLSKYKKAIEILPIYGGQPIERQIKALKKGVQIIIG 150
>gi|348030465|ref|YP_004873151.1| ATP-dependent RNA helicase DbpA [Glaciecola nitratireducens FR1064]
gi|347947808|gb|AEP31158.1| ATP-dependent RNA helicase DbpA [Glaciecola nitratireducens FR1064]
Length = 474
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T Q C+P + G D+ QAK+G GKT F LA L +++ N L+MC TRE
Sbjct: 34 FTHMTQTQQACLPDVLAGADVAVQAKTGSGKTLAFGLALLSKIDVEAKNPQCLIMCPTRE 93
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++++ +K M+N+KV GG+P+ PQIV L + G
Sbjct: 94 LAEQVAEQIRLLAKRMANLKVVSLVGGMPM----------GPQIVSLRYGANVVVGTPGR 143
Query: 154 VMD 156
+MD
Sbjct: 144 IMD 146
>gi|379012782|ref|YP_005270594.1| putative RNA helicase [Acetobacterium woodii DSM 1030]
gi|375303571|gb|AFA49705.1| putative RNA helicase [Acetobacterium woodii DSM 1030]
Length = 551
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E T Q + IPQ ++G D++ ++++G GKT F + + +L+ + V VLV+C
Sbjct: 17 EEMGFVEMTEIQEQAIPQLMMGGDLIGKSQTGTGKTVAFAIPAITKLDPSIKKVQVLVLC 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
TRELA Q+S E+++ KY +KV FGG I+ LK+ +VG
Sbjct: 77 PTRELAVQVSDEFKKVLKYQKGVKVLPIFGGASIETQIRELKSGVQIVVG 126
>gi|331005214|ref|ZP_08328607.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
gi|330420957|gb|EGG95230.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
Length = 462
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 54/89 (60%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
++E T Q + +P + G D++ QAK+G GKTA F LA L +L+ V LV+C TRE
Sbjct: 24 YKEMTEIQAQSLPPMIAGQDVIAQAKTGSGKTAAFGLAMLNKLQVKRFRVQSLVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP 122
LA Q++KE R + + NIKV GG P
Sbjct: 84 LADQVAKEIRRLGRGIHNIKVLTLCGGAP 112
>gi|78485292|ref|YP_391217.1| ATP-dependent RNA helicase DbpA [Thiomicrospira crunogena XCL-2]
gi|78363578|gb|ABB41543.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
Length = 468
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q + +P + G D++ Q K+G GKTA F L LQ+L+ + NV LV+C TRELA Q
Sbjct: 34 TDIQAQSLPPILEGKDVIAQGKTGSGKTAAFGLGVLQKLDVKNFNVQALVLCPTRELADQ 93
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPI 123
++ E R ++ + NIKV GG+P+
Sbjct: 94 VANEIRRLARQLQNIKVLTLCGGMPM 119
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 28 IGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV 87
+G QP + Q + IP + G D++ QA++G GKTA F + L++++ +D + +V
Sbjct: 22 LGYEQP----SPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLEKIDPSDKRLQAIV 77
Query: 88 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+C TRELA Q+S+E + +KY+ +K +GG PI + + LK I+G
Sbjct: 78 LCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIKALKGGVQVIIG 129
>gi|194378930|dbj|BAG58016.1| unnamed protein product [Homo sapiens]
Length = 139
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE 77
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 28 IGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV 87
+G QP + Q + IP + G D++ QA++G GKTA F + L++++ +D + +V
Sbjct: 22 LGYEQP----SPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLEKIDPSDKRLQAIV 77
Query: 88 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+C TRELA Q+S+E + +KY+ +K +GG PI + + LK I+G
Sbjct: 78 LCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIKALKGGVQVIIG 129
>gi|374366880|ref|ZP_09624953.1| ATP-dependent RNA helicase DbpA [Cupriavidus basilensis OR16]
gi|373101566|gb|EHP42614.1| ATP-dependent RNA helicase DbpA [Cupriavidus basilensis OR16]
Length = 473
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
++ T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 36 YQTMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFALALLNRLDARRFDVQALVLCPTRE 95
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ NIK+ GG P++ PQ L + G
Sbjct: 96 LAEQVTQEIRRLARAEENIKILTLCGGSPMR----------PQADSLAHGAHIAVGTPGR 145
Query: 154 VMDVRSGGWWLDLEAL 169
+MD G L+LEAL
Sbjct: 146 IMDHLERG-TLNLEAL 160
>gi|456876876|gb|EMF91938.1| DEAD/DEAH box helicase [Leptospira santarosai str. ST188]
Length = 514
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + K+ N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKFKGNFEVVPVYGGQEIERQLKALRK-NPQIV 127
>gi|359684155|ref|ZP_09254156.1| ATP-dependent RNA helicase [Leptospira santarosai str. 2000030832]
Length = 514
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + K+ N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKFKGNFEVVPVYGGQEIERQLKALRK-NPQIV 127
>gi|17545341|ref|NP_518743.1| ATP-dependent RNA helicase DbpA [Ralstonia solanacearum GMI1000]
gi|17427633|emb|CAD14152.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 465
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+T +V +V+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ L+ H +V
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLE-HGAHVV 131
>gi|418745859|ref|ZP_13302194.1| DEAD/DEAH box helicase [Leptospira santarosai str. CBC379]
gi|418754476|ref|ZP_13310702.1| DEAD/DEAH box helicase [Leptospira santarosai str. MOR084]
gi|421113707|ref|ZP_15574146.1| DEAD/DEAH box helicase [Leptospira santarosai str. JET]
gi|422003115|ref|ZP_16350348.1| ATP-dependent RNA helicase [Leptospira santarosai serovar Shermani
str. LT 821]
gi|409965196|gb|EKO33067.1| DEAD/DEAH box helicase [Leptospira santarosai str. MOR084]
gi|410793243|gb|EKR91163.1| DEAD/DEAH box helicase [Leptospira santarosai str. CBC379]
gi|410800807|gb|EKS06986.1| DEAD/DEAH box helicase [Leptospira santarosai str. JET]
gi|417258336|gb|EKT87728.1| ATP-dependent RNA helicase [Leptospira santarosai serovar Shermani
str. LT 821]
Length = 514
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + K+ N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKFKGNFEVVPVYGGQEIERQLKALRK-NPQIV 127
>gi|430806402|ref|ZP_19433517.1| ATP-dependent RNA helicase DbpA [Cupriavidus sp. HMR-1]
gi|429501352|gb|EKZ99690.1| ATP-dependent RNA helicase DbpA [Cupriavidus sp. HMR-1]
Length = 438
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QA++G GKTA F LA L +L+ +V LV+C TRELA Q
Sbjct: 2 TPIQAASLPLALAGHDLIAQARTGSGKTAAFGLALLHRLDPRPLDVQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+++E R ++ N+KV GG PI+ E L H +V
Sbjct: 62 VTQEIRRLARAEDNVKVLTLSGGSPIRPQVESL-AHGAHVV 101
>gi|410449276|ref|ZP_11303335.1| DEAD/DEAH box helicase [Leptospira sp. Fiocruz LV3954]
gi|410016935|gb|EKO79008.1| DEAD/DEAH box helicase [Leptospira sp. Fiocruz LV3954]
Length = 514
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + K+ N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKFKGNFEVVPVYGGQEIERQLKALRK-NPQIV 127
>gi|420253402|ref|ZP_14756456.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398052204|gb|EJL44488.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 463
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ V +V+C TRE
Sbjct: 26 YVEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARSYAVQAMVLCPTRE 85
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ NIKV GG P++ PQ L + + G
Sbjct: 86 LADQVTQEIRRLARAEENIKVLTLCGGTPMR----------PQTASLEHGAHIVVGTPGR 135
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+MD + G LD L L+L +
Sbjct: 136 IMDHLERGSLSLDALNTLVLDEA 158
>gi|374628683|ref|ZP_09701068.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
gi|373906796|gb|EHQ34900.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
Length = 529
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E T Q+ IP + G DI QA++G GKTA F + L+++ T V +V+
Sbjct: 21 EDMGFEEPTPIQNISIPLIMSGKDITAQAQTGTGKTAAFAIPLLEKINTDKLAVQAIVLA 80
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQK 125
TREL QI++E+ R KYM++I++ +GG PI++
Sbjct: 81 PTRELTIQIAEEFNRLIKYMADIRILPIYGGQPIER 116
>gi|168985565|emb|CAQ10643.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 132
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 40/50 (80%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV 83
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV 114
>gi|76584014|gb|ABA53488.1| ATP-independent RNA helicase [Burkholderia pseudomallei 1710b]
Length = 505
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 68 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 128 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 173
>gi|418720312|ref|ZP_13279510.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. UI 09149]
gi|418738362|ref|ZP_13294757.1| DEAD/DEAH box helicase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410743290|gb|EKQ92033.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. UI 09149]
gi|410745855|gb|EKQ98763.1| DEAD/DEAH box helicase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 513
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + ++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRK-NPQIV 127
>gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
Length = 513
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + ++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRK-NPQIV 127
>gi|271500546|ref|YP_003333571.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
Ech586]
gi|270344101|gb|ACZ76866.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
Length = 457
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ L+ LV+C TRELA Q
Sbjct: 27 TPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHLDAGQFKTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTHNPQIV 138
++ E R ++ M NIKV V GG+P IQ+D H P I+
Sbjct: 87 VANELRRLARGMPNIKVLVLCGGVPFSIQRDS---LIHAPHII 126
>gi|167840691|ref|ZP_02467375.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43]
Length = 458
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 21 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 81 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 126
>gi|449665538|ref|XP_002154660.2| PREDICTED: uncharacterized protein LOC100198812 [Hydra
magnipapillata]
Length = 1139
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 59/99 (59%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP A G D++CQAKSG GKT VF + L+ + + S + VLV+ TRE
Sbjct: 37 FDRPSPIQLQSIPLAKCGADLVCQAKSGTGKTCVFAVTALESINLSLSKLQVLVLAPTRE 96
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT 132
+A QI + + M ++K +F GG+PIQ D + +K+
Sbjct: 97 IAHQIHDVIMKIGQKMKSLKCSLFIGGMPIQHDVDSIKS 135
>gi|167913398|ref|ZP_02500489.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 112]
gi|418542599|ref|ZP_13108019.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1258a]
gi|418549123|ref|ZP_13114202.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1258b]
gi|385355248|gb|EIF61465.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1258a]
gi|385356073|gb|EIF62216.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1258b]
Length = 465
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|390569568|ref|ZP_10249853.1| ATP-dependent RNA helicase DbpA [Burkholderia terrae BS001]
gi|389938428|gb|EIN00272.1| ATP-dependent RNA helicase DbpA [Burkholderia terrae BS001]
Length = 463
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ V +V+C TRE
Sbjct: 26 YVEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARSYAVQAMVLCPTRE 85
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ NIKV GG P++ PQ L + + G
Sbjct: 86 LADQVTQEIRRLARAEENIKVLTLCGGTPMR----------PQTASLEHGAHIVVGTPGR 135
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+MD + G LD L L+L +
Sbjct: 136 IMDHLERGSLSLDGLNTLVLDEA 158
>gi|398334959|ref|ZP_10519664.1| ATP-dependent RNA helicase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 531
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 29 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I + L+ NPQIV
Sbjct: 89 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIDRQLRALRK-NPQIV 132
>gi|124381735|ref|YP_001025050.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10229]
gi|126447168|ref|YP_001079394.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10247]
gi|254356161|ref|ZP_04972438.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
gi|126240022|gb|ABO03134.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei NCTC 10247]
gi|148025144|gb|EDK83313.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
gi|261826475|gb|ABN00540.2| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei NCTC 10229]
Length = 463
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|53716164|ref|YP_106468.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
gi|67639524|ref|ZP_00438373.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei GB8 horse 4]
gi|254203477|ref|ZP_04909838.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei FMH]
gi|254205355|ref|ZP_04911708.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei JHU]
gi|52422134|gb|AAU45704.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
gi|147745716|gb|EDK52795.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei FMH]
gi|147754941|gb|EDK62005.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei JHU]
gi|238520075|gb|EEP83538.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei GB8 horse 4]
Length = 465
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|254176272|ref|ZP_04882930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei ATCC 10399]
gi|160697314|gb|EDP87284.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei ATCC 10399]
Length = 476
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 39 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 98
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 99 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 144
>gi|53721181|ref|YP_110166.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei K96243]
gi|121596589|ref|YP_990560.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
gi|126458103|ref|YP_001074245.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1106a]
gi|162210105|ref|YP_336816.2| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1710b]
gi|166999117|ref|ZP_02264963.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei PRL-20]
gi|167722070|ref|ZP_02405306.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei DM98]
gi|167741069|ref|ZP_02413843.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 14]
gi|167818249|ref|ZP_02449929.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 91]
gi|167826638|ref|ZP_02458109.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 9]
gi|167848158|ref|ZP_02473666.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei B7210]
gi|217422828|ref|ZP_03454330.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 576]
gi|226198779|ref|ZP_03794343.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|242313771|ref|ZP_04812788.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 1106b]
gi|254182850|ref|ZP_04889443.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 1655]
gi|254189582|ref|ZP_04896092.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254264638|ref|ZP_04955503.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 1710a]
gi|254299641|ref|ZP_04967090.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
pseudomallei 406e]
gi|386863897|ref|YP_006276845.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1026b]
gi|403521486|ref|YP_006657055.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BPC006]
gi|418395009|ref|ZP_12969057.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 354a]
gi|418534955|ref|ZP_13100762.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1026a]
gi|418558509|ref|ZP_13123065.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 354e]
gi|52211595|emb|CAH37590.1| ATP-independent RNA helicase [Burkholderia pseudomallei K96243]
gi|121224387|gb|ABM47918.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
gi|126231871|gb|ABN95284.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 1106a]
gi|157809522|gb|EDO86692.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
pseudomallei 406e]
gi|157937260|gb|EDO92930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
pseudomallei Pasteur 52237]
gi|184213384|gb|EDU10427.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 1655]
gi|217393736|gb|EEC33756.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 576]
gi|225929219|gb|EEH25242.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|242137010|gb|EES23413.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 1106b]
gi|243064681|gb|EES46867.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
domain/DbpA RNA binding domain protein [Burkholderia
mallei PRL-20]
gi|254215640|gb|EET05025.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 1710a]
gi|385357382|gb|EIF63444.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1026a]
gi|385362632|gb|EIF68440.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 354e]
gi|385374410|gb|EIF79296.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 354a]
gi|385661025|gb|AFI68447.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1026b]
gi|403076553|gb|AFR18132.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BPC006]
Length = 465
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|237510128|ref|ZP_04522843.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|235002333|gb|EEP51757.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
binding domain protein [Burkholderia pseudomallei
MSHR346]
Length = 465
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|167921338|ref|ZP_02508429.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BCC215]
Length = 465
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase [Haliscomenobacter hydrossis DSM 1100]
gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
DSM 1100]
Length = 516
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP + G D++ QA++G GKTA F + L+ ++ + V +V+C TRE
Sbjct: 24 FAEATPIQSEAIPHLLNGKDLIGQAQTGTGKTAAFGIPLLESIDCSTREVAAIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + +KY + + +GG IQ+ + LK PQ+V
Sbjct: 84 LAVQVAEELRKLAKYKKGLFISTIYGGDSIQRQLKELKA-GPQVV 127
>gi|394989923|ref|ZP_10382755.1| DEAD/DEAH box helicase domain protein [Sulfuricella denitrificans
skB26]
gi|393790188|dbj|GAB72394.1| DEAD/DEAH box helicase domain protein [Sulfuricella denitrificans
skB26]
Length = 475
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F LA L +L V +V+C TRELA Q
Sbjct: 42 TPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLTRLNPRRFAVQAMVLCPTRELADQ 101
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDV 157
+++E R +++ NIK+ GG P++ PQI L + + G ++D
Sbjct: 102 VTQEIRRLARFADNIKIVALCGGTPMR----------PQINSLEHGAHIVVGTPGRIIDH 151
Query: 158 RSGGWWLDLEAL 169
+ G LDL+AL
Sbjct: 152 LTRG-SLDLDAL 162
>gi|293605139|ref|ZP_06687530.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
43553]
gi|292816463|gb|EFF75553.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
43553]
Length = 462
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + T Q + +P + G DI+ QAK+G GKTA F L LQ+L+ L++C TRE
Sbjct: 24 FEQMTPIQAQSLPLILEGRDIIAQAKTGSGKTAAFGLGVLQKLDPARLAPQALLVCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYET 145
LA Q+++E R ++ + N+K+ GG P + E L +VG L
Sbjct: 84 LADQVAQELRRLARLIPNVKILTLCGGAPARPQAESLARGAHLVVGTPGRIQDHLERGSL 143
Query: 146 NLSGVVVNVMD 156
+LSG+ V+D
Sbjct: 144 DLSGLTTLVLD 154
>gi|352103380|ref|ZP_08959834.1| ATP-dependent RNA helicase DbpA [Halomonas sp. HAL1]
gi|350599395|gb|EHA15483.1| ATP-dependent RNA helicase DbpA [Halomonas sp. HAL1]
Length = 477
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E + Q E +P + G D+L QAK+G GKTA F LA L +L+ V LV+C TRE
Sbjct: 36 YHEMSPVQAESLPPMLAGRDVLAQAKTGSGKTAAFGLALLAKLKVESFAVQGLVLCPTRE 95
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP 122
LA Q+++E R ++ M+NIK+ GG P
Sbjct: 96 LADQVAEELRRLARGMANIKILTLCGGAP 124
>gi|183598940|ref|ZP_02960433.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
gi|188021152|gb|EDU59192.1| DEAD/DEAH box helicase [Providencia stuartii ATCC 25827]
Length = 457
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRELA Q
Sbjct: 27 TPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAKQFSTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTH 133
++ E R ++YM+NIK+ GG+P +Q+D H
Sbjct: 87 VASELRRLARYMANIKILTLCGGVPFSVQRDSLIHAAH 124
>gi|386745290|ref|YP_006218469.1| ATP-dependent RNA helicase DbpA [Providencia stuartii MRSN 2154]
gi|384481983|gb|AFH95778.1| ATP-dependent RNA helicase DbpA [Providencia stuartii MRSN 2154]
Length = 457
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRELA Q
Sbjct: 27 TPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAKQFSTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTH 133
++ E R ++YM+NIK+ GG+P +Q+D H
Sbjct: 87 VASELRRLARYMANIKILTLCGGVPFSVQRDSLIHAAH 124
>gi|120612881|ref|YP_972559.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120591345|gb|ABM34785.1| ATP-dependent RNA helicase DbpA [Acidovorax citrulli AAC00-1]
Length = 477
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q +P A+LG D++ QA +G GKTA F LA L++L V LV+C TRE
Sbjct: 37 YERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLERLNPRRFAVQALVLCPTRE 96
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++ E R ++ NIKV GG+P++ L+ H +V
Sbjct: 97 LADQVAAEIRRLARAQENIKVVTLCGGVPLRGQAASLE-HGAHVV 140
>gi|440287772|ref|YP_007340537.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
gi|440047294|gb|AGB78352.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
Length = 457
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRELA Q
Sbjct: 27 TPVQEAALPAVLAGKDVRVQAKTGSGKTAAFGLGLLQHIDASRFQTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++Y+ NIKV GG P + L+ H P I+
Sbjct: 87 VAGEIRRLARYLPNIKVLTLCGGQPFGAQRDSLQ-HAPHII 126
>gi|187922064|ref|YP_001893706.1| ATP-dependent RNA helicase DbpA [Burkholderia phytofirmans PsJN]
gi|187713258|gb|ACD14482.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 467
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ + V +V+C TRE
Sbjct: 29 YVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARNFAVQAMVLCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ L+ H IV
Sbjct: 89 LADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLE-HGAHIV 132
>gi|354807813|ref|ZP_09041268.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
gi|354513709|gb|EHE85701.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
Length = 523
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L LQ L+ + N+ L++ TRE
Sbjct: 21 FEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPILQNLDLDNPNIQALIISPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q +E R + KV V +GG I++ LK H PQI+
Sbjct: 81 LAIQTQEELYRLGRD-RKAKVQVVYGGADIRRQIRSLKDH-PQIL 123
>gi|421095225|ref|ZP_15555938.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200801926]
gi|410361935|gb|EKP12975.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200801926]
Length = 513
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + ++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIELLELESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRK-NPQIV 127
>gi|365852717|ref|ZP_09393074.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
parafarraginis F0439]
gi|363714293|gb|EHL97826.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
parafarraginis F0439]
Length = 503
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90
S F E T Q E IP + G D++ QA++G GKTA F L LQ L+ + NV L++
Sbjct: 18 SSGFEEATPIQAETIPMVLKGEDVIGQAQTGTGKTAAFGLPILQNLDFDNPNVQALIISP 77
Query: 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q +E R K KV V +GG I++ LK+H PQI+
Sbjct: 78 TRELAIQTQEEIYRLGKD-EKAKVQVVYGGADIRRQINALKSH-PQII 123
>gi|385207461|ref|ZP_10034329.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385179799|gb|EIF29075.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 467
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ + V +V+C TRE
Sbjct: 29 YVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDVRNFAVQAMVLCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ L+ H IV
Sbjct: 89 LADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLE-HGAHIV 132
>gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 467
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ + V +V+C TRE
Sbjct: 29 YVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARNFAVQAMVLCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ L+ H IV
Sbjct: 89 LADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLE-HGAHIV 132
>gi|456888324|gb|EMF99307.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200701203]
Length = 527
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G DI+ A++G GKTA F + ++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIELLELESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRK-NPQIV 127
>gi|377809005|ref|YP_005004226.1| DEAD/DEAH box helicase [Pediococcus claussenii ATCC BAA-344]
gi|361055746|gb|AEV94550.1| DEAD/DEAH box helicase family protein [Pediococcus claussenii ATCC
BAA-344]
Length = 518
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q E IP + G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRE
Sbjct: 21 YEEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPILQHVDLNNPNIQAIIVSPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q E + KY KV V +GG I++ LK+H PQIV
Sbjct: 81 LAAQTQAEIFKLGKY-KKAKVQVVYGGADIRRQINSLKSH-PQIV 123
>gi|377819452|ref|YP_004975823.1| ATP-independent RNA helicase DbpA [Burkholderia sp. YI23]
gi|357934287|gb|AET87846.1| ATP-independent RNA helicase DbpA [Burkholderia sp. YI23]
Length = 460
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F L L +L+++ V LV+C TRELA Q
Sbjct: 29 TPIQAASLPPALAGHDLIAQAKTGSGKTAAFTLPLLSKLDSSRFAVQALVLCPTRELADQ 88
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMD 156
+++E R ++ N+KV GG P++ PQI L + + G +MD
Sbjct: 89 VTQEIRRLARAEDNVKVLTLCGGTPMR----------PQIASLEHGAHIVVGTPGRIMD 137
>gi|311279320|ref|YP_003941551.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308748515|gb|ADO48267.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 457
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
++ T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRE
Sbjct: 23 YQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDASQFITQSLVLCPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++ + +++M NIKV GGLP + L TH P I+
Sbjct: 83 LADQVASALRKLARFMPNIKVLTLCGGLPFSVQRDSL-THAPHII 126
>gi|406671543|ref|ZP_11078782.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
gi|405580793|gb|EKB54852.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
Length = 485
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP A+ G D++ QA++G GKTA F L L +++ ++NV L++ TRE
Sbjct: 21 FEEPTPIQQQGIPIALSGKDLIGQAQTGTGKTAAFGLPLLNKIDPKNTNVQALIVAPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+ +E R SK + V V +GG PI K + L++ Q++
Sbjct: 81 LAIQVQEELYRLSKVLKT-NVYVVYGGAPIDKQIKRLRSQKVQVL 124
>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
Length = 571
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 68/120 (56%)
Query: 20 NRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT 79
N E+ R E F E + Q + IP + G+D++ QA++G GKTA + + LQ++
Sbjct: 7 NIDERILRAVEDMGFEETSPIQTQAIPAVLEGIDVIGQAQTGTGKTAAYSIPMLQKINPD 66
Query: 80 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+V+C TRELA Q+++E + +KYMS+IKV +GG I + + LK IVG
Sbjct: 67 VKKPQAIVLCPTRELAVQVAEEIRKLAKYMSDIKVLPVYGGQEIVRQIKSLKAGVQIIVG 126
>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 543
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q IP+ + G+DI+ Q+++G GKTA F + L++ + V +++C TRE
Sbjct: 24 FEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIPVLEKTNAKNKAVQSVILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQK 125
LA Q+++E + FSKY I + +GG PIQ+
Sbjct: 84 LAIQVAEELKLFSKYKKGINIVPVYGGQPIQR 115
>gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
Length = 467
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ + V +V+C TRE
Sbjct: 29 YVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDVRNFAVQAMVLCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ L+ H IV
Sbjct: 89 LADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLE-HGAHIV 132
>gi|386288694|ref|ZP_10065834.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium BDW918]
gi|385278249|gb|EIF42221.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium BDW918]
Length = 462
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q + +P + G D++ Q K+G GKTAVF L LQ+L+ V LV+C TRE
Sbjct: 24 YTEMTPIQAKALPHTLHGKDVIAQGKTGSGKTAVFGLTQLQKLDVKKFYVQSLVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP 122
LA Q++KE + ++ + NIKV GG+P
Sbjct: 84 LADQVAKELRKLARTIHNIKVLTLCGGMP 112
>gi|242021722|ref|XP_002431292.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212516560|gb|EEB18554.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 591
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES FR+ + Q + IP G D++ QAKSG GKT VF + L+ +++ N+ VL++
Sbjct: 41 ESCGFRKPSPVQRKAIPLGRCGFDLIVQAKSGTGKTCVFTIVALEMMDSDSDNLQVLILS 100
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
TRE++ QI K N+KV F GG+P+ D++ +K
Sbjct: 101 PTREISVQIKDVISAIGKNFKNLKVSAFIGGMPLVTDKKNIK 142
>gi|170736688|ref|YP_001777948.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia MC0-3]
gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 465
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDARSFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV 130
>gi|167584515|ref|ZP_02376903.1| ATP-dependent RNA helicase DbpA [Burkholderia ubonensis Bu]
Length = 464
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +V+C TRE
Sbjct: 27 YADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQAMVLCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLE-HGAHIV 130
>gi|425738293|ref|ZP_18856558.1| hypothetical protein C273_07847 [Staphylococcus massiliensis S46]
gi|425479966|gb|EKU47136.1| hypothetical protein C273_07847 [Staphylococcus massiliensis S46]
Length = 495
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 10/145 (6%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E+ F+E T Q++ IP A+ G+DIL QA++G GKT F + ++++ + L++
Sbjct: 18 EAMGFKEPTPIQNDSIPYALEGVDILGQAQTGTGKTGAFGIPLIEKV-VDKEGIQALILA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q++++ FSK N++V FGG+PI + + LK P+IV G
Sbjct: 77 PTRELAMQVAEQIREFSKG-QNVQVATVFGGMPIDRQIKTLK-RRPKIV------VGTPG 128
Query: 150 VVVNVMDVRSGGWWLDLEALILSKC 174
V++ +D R+ D+ LIL +
Sbjct: 129 RVIDHLDRRTLKTN-DIHTLILDEA 152
>gi|336422222|ref|ZP_08602374.1| hypothetical protein HMPREF0993_01751 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336009132|gb|EGN39130.1| hypothetical protein HMPREF0993_01751 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 526
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G DI+ QA++G GKTA F + L++++ + + +V+C TRE
Sbjct: 24 FEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGIPLLEKIDLKNKKLQAIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E +KYM IKV +GG I K LK+ I+G
Sbjct: 84 LAIQVAEEIRNLAKYMHAIKVLPIYGGQEIVKQIRSLKSGTQLIIG 129
>gi|358065981|ref|ZP_09152515.1| hypothetical protein HMPREF9473_04578 [Clostridium hathewayi
WAL-18680]
gi|356695844|gb|EHI57469.1| hypothetical protein HMPREF9473_04578 [Clostridium hathewayi
WAL-18680]
Length = 563
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP + GMDI+ QA++G GKTA F + LQ+++ + + +C TRE
Sbjct: 24 FEAASPIQAQAIPTQLEGMDIIGQAQTGTGKTAAFGIPLLQKIDPKKKKLQAIALCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E + +KYM +KV +GG I K LK ++G
Sbjct: 84 LAIQVAEEVRKLAKYMHGVKVVPIYGGQDIVKQIRSLKDGTQIVIG 129
>gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
Length = 465
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARSFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV 130
>gi|254249351|ref|ZP_04942671.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
PC184]
gi|124875852|gb|EAY65842.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
PC184]
Length = 436
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRELA Q
Sbjct: 2 TPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDARSFDVQAMILCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 62 VAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV 101
>gi|389775826|ref|ZP_10193691.1| ATP-dependent RNA helicase DbpA [Rhodanobacter spathiphylli B39]
gi|388437067|gb|EIL93893.1| ATP-dependent RNA helicase DbpA [Rhodanobacter spathiphylli B39]
Length = 459
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E+ + E T Q + +P + G D++ QA++G GKTA F L+ LQ ++ + LV+C
Sbjct: 18 ETLGYAEMTPVQAQSLPPMLEGRDVIAQAQTGSGKTAAFGLSLLQSIDVDTIRLQALVLC 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q+SK + + + N+K+ GG+P+ L TH+P IV
Sbjct: 78 PTRELADQVSKAIRKLAANIPNVKLLTLCGGMPLGPQLASL-THDPHIV 125
>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
Length = 561
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G DI+ QA++G GKTA F + LQ+++ + + +C TRE
Sbjct: 24 FEEASPIQAQAIPVQMEGRDIIGQAQTGTGKTAAFGIPLLQKVDPKSKKLQAIALCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q++ E R +KYM +KV +GG I K LK I+G
Sbjct: 84 LAIQVADEIRRLAKYMHGVKVLPIYGGQDIVKQIRSLKDGTQIIIG 129
>gi|167908511|ref|ZP_02495716.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei NCTC
13177]
Length = 435
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRELA Q
Sbjct: 2 TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 62 VAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 103
>gi|421482336|ref|ZP_15929918.1| ATP-dependent RNA helicase DbpA [Achromobacter piechaudii HLE]
gi|400199671|gb|EJO32625.1| ATP-dependent RNA helicase DbpA [Achromobacter piechaudii HLE]
Length = 462
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S F + T Q + +P + G DI+ QAK+G GKTA F L LQ+L+T+ L++C
Sbjct: 20 QSLGFEQMTPIQAQSLPLILEGRDIIAQAKTGSGKTAAFGLGVLQKLDTSRLTPQALLVC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LV 141
TRELA Q+++E R ++ + N+K+ GG + E L +VG L
Sbjct: 80 PTRELADQVAQELRRLARLIPNVKILTLCGGAAARPQAESLARGAHLVVGTPGRIQDHLT 139
Query: 142 NYETNLSGVVVNVMD 156
+L+G+ V+D
Sbjct: 140 RGSLDLAGLTTLVLD 154
>gi|352090141|ref|ZP_08954313.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
gi|351677519|gb|EHA60667.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
Length = 459
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E+ + E T Q + +P + G D++ QA++G GKTA F L+ LQ ++ + LV+C
Sbjct: 18 ETLGYTEMTPVQAQSLPPMLAGRDVIAQAQTGSGKTAAFGLSLLQSIDVDTIRLQALVLC 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q+SK + + + N+K+ GG+P+ L +H+P IV
Sbjct: 78 PTRELADQVSKALRKLAANIPNVKLLTLCGGMPLGPQLASL-SHDPHIV 125
>gi|167896715|ref|ZP_02484117.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 7894]
Length = 435
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRELA Q
Sbjct: 2 TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 62 VAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 103
>gi|392954165|ref|ZP_10319717.1| ATP-dependent RNA helicase DbpA [Hydrocarboniphaga effusa AP103]
gi|391858064|gb|EIT68594.1| ATP-dependent RNA helicase DbpA [Hydrocarboniphaga effusa AP103]
Length = 472
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 10/136 (7%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F T Q + +P + G D++ QA++G GKTA + L L +++ V LV+C
Sbjct: 32 ESLGFTRMTPIQAQSLPPILQGRDVIGQARTGSGKTAAYGLGLLSRIDPAIEQVQALVLC 91
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV---------GL 140
TRELA QI+KE R ++ + N+K+ GG+ Q+ + H PQI+ L
Sbjct: 92 PTRELADQIAKEIRRLARCLPNVKLSQLNGGIS-QRPQLASLQHAPQIIVGMAGRVLEHL 150
Query: 141 VNYETNLSGVVVNVMD 156
+LSG+ V V+D
Sbjct: 151 EQSSLDLSGLRVLVLD 166
>gi|389799070|ref|ZP_10202074.1| ATP-dependent RNA helicase DbpA [Rhodanobacter sp. 116-2]
gi|388443695|gb|EIL99832.1| ATP-dependent RNA helicase DbpA [Rhodanobacter sp. 116-2]
Length = 459
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E+ + E T Q + +P + G D++ QA++G GKTA F L+ LQ ++ + LV+C
Sbjct: 18 ETLGYTEMTPVQAQSLPPMLAGRDVIAQAQTGSGKTAAFGLSLLQSIDVDTIRLQALVLC 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q+SK + + + N+K+ GG+P+ L +H+P IV
Sbjct: 78 PTRELADQVSKALRKLAANIPNVKLLTLCGGMPLGPQLASL-SHDPHIV 125
>gi|325953815|ref|YP_004237475.1| DEAD/DEAH box helicase [Weeksella virosa DSM 16922]
gi|323436433|gb|ADX66897.1| DEAD/DEAH box helicase domain protein [Weeksella virosa DSM 16922]
Length = 586
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 30 ESQPFREQTSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 88
E F + Q + IPQ + D++ A++G GKTA F L L QL+ + NV +++
Sbjct: 17 EDMGFVSPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLPILNQLDLSQKNVQAIIL 76
Query: 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
C TREL QI+KE E F+ +M +K+ +GG I K + L+ NPQIV
Sbjct: 77 CPTRELCLQIAKEMESFAAHMQGVKIQAVYGGADIVKQIKGLR-DNPQIV 125
>gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
Length = 462
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES + T Q + +P + G D++ Q K+G GKTA F L L++L + L++C
Sbjct: 20 ESLGYHVMTPIQAQSLPHVLAGKDVIAQGKTGSGKTAAFGLGLLEKLSVKRFRIQSLILC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q+ KE R ++ + NIKV GG+P PQI L + + G
Sbjct: 80 PTRELADQVGKELRRLARTIHNIKVLTLCGGVPF----------GPQIGSLEHGAHIIVG 129
Query: 150 VVVNVMD-VRSGGWWL-DLEALILSKC 174
+ D +R G L DLE L+L +
Sbjct: 130 TPGRIEDHLRKGTLRLDDLEVLVLDEA 156
>gi|50122015|ref|YP_051182.1| ATP-dependent RNA helicase DbpA [Pectobacterium atrosepticum
SCRI1043]
gi|49612541|emb|CAG75991.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 460
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D+ +AK+G GKTA F + L ++ +D LV+C TRE
Sbjct: 24 YTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + + L H P IV
Sbjct: 84 LADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL-VHAPHIV 127
>gi|161723115|ref|YP_438416.2| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
Length = 465
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRELA Q
Sbjct: 32 TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQ 91
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 92 VAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|389794564|ref|ZP_10197716.1| ATP-dependent RNA helicase DbpA [Rhodanobacter fulvus Jip2]
gi|388432370|gb|EIL89384.1| ATP-dependent RNA helicase DbpA [Rhodanobacter fulvus Jip2]
Length = 459
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E+ + E T Q + +P + G D++ QA++G GKTA F L+ LQ ++ + LV+C
Sbjct: 18 ETLGYTEMTPVQAQSLPPMLEGRDVIAQAQTGSGKTAAFGLSLLQAIDVDTIRLQALVLC 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q+SK + + + N+K+ GG+P+ L TH+P IV
Sbjct: 78 PTRELADQVSKAIRKLAANIPNVKLLTLCGGMPLGPQLASL-THDPHIV 125
>gi|326318919|ref|YP_004236591.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323375755|gb|ADX48024.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 478
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q +P A+LG D++ QA +G GKTA F LA L++L V LV+C TRE
Sbjct: 38 YERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLERLNPRRFAVQALVLCPTRE 97
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQ 124
LA Q++ E R ++ NIKV GG+P++
Sbjct: 98 LADQVASEIRRLARAQENIKVVTLCGGVPLR 128
>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
Length = 516
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T +V +V+
Sbjct: 18 ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+ +E + K+ +++ +GG I + LK H IVG +N
Sbjct: 78 PTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 136
Query: 143 YET----NLSGVVVNVMD-VRSGGWWLDLEALI 170
+T N+ VV++ D + + G+ D+EA++
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
>gi|126444520|ref|YP_001061297.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 668]
gi|126224011|gb|ABN87516.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
pseudomallei 668]
Length = 465
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +++ +V LV+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARIDARRFDVQALVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|167614869|ref|ZP_02383504.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis Bt4]
Length = 465
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRELA Q
Sbjct: 32 TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQ 91
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 92 VAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|42779348|ref|NP_976595.1| DEAD/DEAH box helicase [Bacillus cereus ATCC 10987]
gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217957807|ref|YP_002336351.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus cereus
AH187]
gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|375282337|ref|YP_005102772.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|384178162|ref|YP_005563924.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402554174|ref|YP_006595445.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
gi|423357187|ref|ZP_17334786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|423376168|ref|ZP_17353482.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|423572348|ref|ZP_17548555.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|423577914|ref|ZP_17554033.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|423607941|ref|ZP_17583834.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|81700027|sp|Q73EU1.1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
ATCC 10987]
gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH187]
gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358350860|dbj|BAL16032.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NC7401]
gi|401075815|gb|EJP84184.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|401089159|gb|EJP97331.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|401197715|gb|EJR04643.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|401203960|gb|EJR10791.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|401239515|gb|EJR45942.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|401795384|gb|AFQ09243.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
Length = 525
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T +V +V+
Sbjct: 18 ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+ +E + K+ +++ +GG I + LK H IVG +N
Sbjct: 78 PTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 136
Query: 143 YET----NLSGVVVNVMD-VRSGGWWLDLEALI 170
+T N+ VV++ D + + G+ D+EA++
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|423422457|ref|ZP_17399488.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|423433901|ref|ZP_17410882.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|423507747|ref|ZP_17484314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449086891|ref|YP_007419332.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401119847|gb|EJQ27653.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|401128051|gb|EJQ35755.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|402443146|gb|EJV75059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449020648|gb|AGE75811.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 525
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T +V +V+
Sbjct: 18 ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+ +E + K+ +++ +GG I + LK H IVG +N
Sbjct: 78 PTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 136
Query: 143 YET----NLSGVVVNVMD-VRSGGWWLDLEALI 170
+T N+ VV++ D + + G+ D+EA++
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
>gi|416962510|ref|ZP_11936399.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49]
gi|325521922|gb|EGD00628.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49]
Length = 464
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +V+C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDARRFDVQAMVLCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ N+KV GG P++ + L+ H IV G +++
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV------VGTPGRIMD 139
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+D G LD L L+L +
Sbjct: 140 HLD--RGNLQLDALNTLVLDEA 159
>gi|238919400|ref|YP_002932915.1| ATP-dependent RNA helicase DbpA, putative [Edwardsiella ictaluri
93-146]
gi|238868969|gb|ACR68680.1| ATP-dependent RNA helicase DbpA, putative [Edwardsiella ictaluri
93-146]
Length = 457
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
++ T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRE
Sbjct: 23 YQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDASRFITQSLVLCPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++ R ++YM NIKV GG+P + L H P I+
Sbjct: 83 LADQVAAALRRLARYMPNIKVLTLCGGVPFGAQRDSL-IHAPHII 126
>gi|167576699|ref|ZP_02369573.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis TXDOH]
Length = 465
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRELA Q
Sbjct: 32 TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQ 91
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 92 VAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|355627088|ref|ZP_09049059.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|354820528|gb|EHF04943.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
Length = 552
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP + G+DI+ QA++G GKTA F + LQ+++ + +++C TRE
Sbjct: 24 FEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLLQKVDPKSKKLQAIILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+S+E R +KYM +KV +GG I + LK I+G
Sbjct: 84 LAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKDGIQVIIG 129
>gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1001]
gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 467
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ V +V+C TRE
Sbjct: 29 YVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARKFAVQAMVLCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ L+ H IV
Sbjct: 89 LADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLE-HGAHIV 132
>gi|359395930|ref|ZP_09188982.1| ATP-independent RNA helicase dbpA [Halomonas boliviensis LC1]
gi|357970195|gb|EHJ92642.1| ATP-independent RNA helicase dbpA [Halomonas boliviensis LC1]
Length = 477
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E + Q E +P + G D+L QAK+G GKTA F LA L +L+ V LV+C TRE
Sbjct: 36 YHEMSPVQAESLPPMLAGRDVLAQAKTGSGKTAAFGLALLAKLKVESFAVQGLVLCPTRE 95
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP 122
LA Q+++E R ++ M+N+K+ GG P
Sbjct: 96 LADQVAEELRRLARGMANVKILTLCGGAP 124
>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
Length = 552
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q + IP + G+DI+ QA++G GKTA F + LQ+++ + +++C TRE
Sbjct: 24 FEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLLQKVDPKSKKLQAIILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+S+E R +KYM +KV +GG I + LK I+G
Sbjct: 84 LAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKDGIQVIIG 129
>gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
gi|420137036|ref|ZP_14645038.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CIG1]
gi|421157477|ref|ZP_15616845.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 25324]
gi|451987568|ref|ZP_21935723.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 18A]
gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
gi|403250212|gb|EJY63666.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CIG1]
gi|404550581|gb|EKA59319.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 25324]
gi|451754718|emb|CCQ88246.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 18A]
Length = 458
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE T Q + +P + G D++ QAK+G GKTA F LA L L LV+C TRE
Sbjct: 24 YREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPLNPRYFGCQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE R ++ NIKV GG+P + PQ+ L + + G
Sbjct: 84 LADQVAKEIRRLARAADNIKVLTLCGGVP----------YGPQVASLEHGAHVVVGTPGR 133
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+ + +R G LD L L+L +
Sbjct: 134 IQEHLRKGTLVLDGLNTLVLDEA 156
>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423632143|ref|ZP_17607889.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401262038|gb|EJR68185.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
Length = 517
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T +V +V+
Sbjct: 18 ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+ +E + K+ +++ +GG I + LK H IVG +N
Sbjct: 78 PTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 136
Query: 143 YET----NLSGVVVNVMD-VRSGGWWLDLEALI 170
+T N+ VV++ D + + G+ D+EA++
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|423646358|ref|ZP_17621928.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|401287656|gb|EJR93433.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
Length = 525
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T +V +V+
Sbjct: 18 ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+ +E + K+ +++ +GG I + LK H IVG +N
Sbjct: 78 PTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 136
Query: 143 YET----NLSGVVVNVMD-VRSGGWWLDLEALI 170
+T N+ VV++ D + + G+ D+EA++
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
>gi|421151522|ref|ZP_15611134.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 14886]
gi|404527205|gb|EKA37378.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 14886]
Length = 458
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE T Q + +P + G D++ QAK+G GKTA F LA L L LV+C TRE
Sbjct: 24 YREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPLNPRYFGCQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE R ++ NIKV GG+P + PQ+ L + + G
Sbjct: 84 LADQVAKEIRRLARAADNIKVLTLCGGVP----------YGPQVASLEHGAHVVVGTPGR 133
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+ + +R G LD L L+L +
Sbjct: 134 IQEHLRKGTLVLDGLNTLVLDEA 156
>gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1]
gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
gi|355646784|ref|ZP_09054619.1| hypothetical protein HMPREF1030_03705 [Pseudomonas sp. 2_1_26]
gi|386068635|ref|YP_005983939.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|416856302|ref|ZP_11911946.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 138244]
gi|416874977|ref|ZP_11918470.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 152504]
gi|421165322|ref|ZP_15623657.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC
700888]
gi|421172218|ref|ZP_15629994.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CI27]
gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
gi|334842177|gb|EGM20790.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 138244]
gi|334842530|gb|EGM21136.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 152504]
gi|348037194|dbj|BAK92554.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|354828323|gb|EHF12446.1| hypothetical protein HMPREF1030_03705 [Pseudomonas sp. 2_1_26]
gi|404538079|gb|EKA47636.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CI27]
gi|404542181|gb|EKA51511.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC
700888]
gi|453045833|gb|EME93551.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA21_ST175]
Length = 458
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE T Q + +P + G D++ QAK+G GKTA F LA L L LV+C TRE
Sbjct: 24 YREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPLNPRYFGCQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE R ++ NIKV GG+P + PQ+ L + + G
Sbjct: 84 LADQVAKEIRRLARAADNIKVLTLCGGVP----------YGPQVASLEHGAHVVVGTPGR 133
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+ + +R G LD L L+L +
Sbjct: 134 IQEHLRKGTLVLDGLNTLVLDEA 156
>gi|407711798|ref|YP_006832363.1| ATP-independent RNA helicase DbpA [Burkholderia phenoliruptrix
BR3459a]
gi|407233982|gb|AFT84181.1| ATP-independent RNA helicase DbpA [Burkholderia phenoliruptrix
BR3459a]
Length = 467
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ V +V+C TRE
Sbjct: 29 YVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARKFAVQAMVLCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ L+ H IV
Sbjct: 89 LADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLE-HGAHIV 132
>gi|392981865|ref|YP_006480452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa DK2]
gi|419755935|ref|ZP_14282287.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa
PADK2_CF510]
gi|384397597|gb|EIE44008.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa
PADK2_CF510]
gi|392317370|gb|AFM62750.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa DK2]
Length = 458
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE T Q + +P + G D++ QAK+G GKTA F LA L L LV+C TRE
Sbjct: 24 YREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPLNPRYFGCQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE R ++ NIKV GG+P + PQ+ L + + G
Sbjct: 84 LADQVAKEIRRLARAADNIKVLTLCGGVP----------YGPQVASLEHGAHVVVGTPGR 133
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+ + +R G LD L L+L +
Sbjct: 134 IQEHLRKGTLVLDGLNTLVLDEA 156
>gi|325663268|ref|ZP_08151718.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470722|gb|EGC73952.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 529
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G DI+ QA++G GKTA F + L++++ + + +V+C TRE
Sbjct: 24 FEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPMLEKIDPKNKKLQGIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E +KYM IKV +GG I K LK+ I+G
Sbjct: 84 LAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLIIG 129
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T Q + IP A+ G+D++ QA++G GKTA F + L ++E + V L++ TRE
Sbjct: 22 FDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSKIEKGNKAVQALILAPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S+E R +KY N++ +GG I K LK NPQIV
Sbjct: 82 LALQVSQEINRLAKY-KNVEAIAIYGGEDIGKQIRGLK-KNPQIV 124
>gi|206562042|ref|YP_002232805.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia J2315]
gi|421864167|ref|ZP_16295854.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia H111]
gi|444357689|ref|ZP_21159210.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444372930|ref|ZP_21172350.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198038082|emb|CAR54030.1| ATP-independent RNA helicase [Burkholderia cenocepacia J2315]
gi|358075744|emb|CCE46732.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia H111]
gi|443592576|gb|ELT61367.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|443605936|gb|ELT73749.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
Length = 465
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARRFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV 130
>gi|418595150|ref|ZP_13158775.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21342]
gi|374402283|gb|EHQ73315.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21342]
Length = 506
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F+E T Q + IP A+ G+DIL QA++G GKT F + ++++ V L++
Sbjct: 18 ESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++++ FS+ ++VG FGG+PI++ + LK PQIV
Sbjct: 77 PTRELAMQVAEQLREFSRG-QGVQVGTVFGGMPIERQIKALK-KGPQIV 123
>gi|331086825|ref|ZP_08335902.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409991|gb|EGG89426.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 529
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G DI+ QA++G GKTA F + L++++ + + +V+C TRE
Sbjct: 24 FEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPMLEKIDPKNKKLQGIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E +KYM IKV +GG I K LK+ I+G
Sbjct: 84 LAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLIIG 129
>gi|406598434|ref|YP_006749564.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
gi|406375755|gb|AFS39010.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
Length = 459
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+SQ + + Q + +P+A+ G D++ QA++G GKT FV+ LQ +E D +++C
Sbjct: 20 DSQGIYQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVIPALQHVEVNDFTTQAIILC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++++ +K + NIKV GG P+ + LK H+P I+
Sbjct: 80 PTRELADQVAQQCRSAAKNIGNIKVTTLCGGQPMGPQIQSLK-HSPHII 127
>gi|413963956|ref|ZP_11403183.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. SJ98]
gi|413929788|gb|EKS69076.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. SJ98]
Length = 460
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F L L +L+ T V LV+C TRELA Q
Sbjct: 29 TPIQVASLPLALAGHDLIAQAKTGSGKTAAFTLPLLAKLDATRFAVQALVLCPTRELADQ 88
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMD 156
+++E R ++ N+KV GG P++ PQI L + + G +MD
Sbjct: 89 VTQEIRRLARAEENVKVLTLCGGTPMR----------PQIASLEHGAHIIVGTPGRIMD 137
>gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2]
gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
gi|386056522|ref|YP_005973044.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa M18]
gi|418584977|ref|ZP_13149034.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P1]
gi|418591717|ref|ZP_13155608.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P2]
gi|421178365|ref|ZP_15635979.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa E2]
gi|421515071|ref|ZP_15961757.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO579]
gi|424943126|ref|ZP_18358889.1| RNA helicase DbpA [Pseudomonas aeruginosa NCMG1179]
gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
gi|346059572|dbj|GAA19455.1| RNA helicase DbpA [Pseudomonas aeruginosa NCMG1179]
gi|347302828|gb|AEO72942.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa M18]
gi|375045309|gb|EHS37895.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P1]
gi|375049443|gb|EHS41939.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P2]
gi|404348799|gb|EJZ75136.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO579]
gi|404548419|gb|EKA57370.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa E2]
Length = 458
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE T Q + +P + G D++ QAK+G GKTA F LA L L LV+C TRE
Sbjct: 24 YREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPLNPRYFGCQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE R ++ NIKV GG+P + PQ+ L + + G
Sbjct: 84 LADQVAKEIRRLARAADNIKVLTLCGGVP----------YGPQVASLEHGAHVVVGTPGR 133
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+ + +R G LD L L+L +
Sbjct: 134 IQEHLRKGTLVLDGLNTLVLDEA 156
>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|423387287|ref|ZP_17364541.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|434378873|ref|YP_006613517.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|401629250|gb|EJS47075.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|401877430|gb|AFQ29597.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
Length = 521
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T V +V+
Sbjct: 18 ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+ +E + K+ +++ +GG I + LK H IVG +N
Sbjct: 78 PTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 136
Query: 143 YET----NLSGVVVNVMD-VRSGGWWLDLEALI 170
+T N+ VV++ D + + G+ D+EA++
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
>gi|407701653|ref|YP_006826440.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250800|gb|AFT79985.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str. 'Black
Sea 11']
Length = 459
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+SQ + + Q + +P+A+ G D++ QA++G GKT FV+ LQ +E D +++C
Sbjct: 20 DSQGIYQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVIPALQHVEVNDFTTQAIILC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++++ +K + NIKV GG P+ + LK H+P I+
Sbjct: 80 PTRELADQVAQQCRTAAKNIGNIKVTTLCGGQPMGPQIQSLK-HSPHII 127
>gi|399018220|ref|ZP_10720404.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398101856|gb|EJL92056.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 466
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE T+ Q E +P A+ G D++ QAK+G GKTA F +A L +L + + LV+C TRE
Sbjct: 28 YREMTAIQAESLPVALEGRDLIAQAKTGSGKTAAFGIAMLHRLNPSYFAIQGLVICPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VNYET- 145
LA Q+S E R +++ NIK+ GG ++ L+ +VG + +T
Sbjct: 88 LADQVSNELRRLARFTDNIKILTLCGGTAMRPQIASLEHGCHIVVGTPGRIRDHIGRDTI 147
Query: 146 NLSGVVVNVMD----VRSGGWWLDLEALILSKC 174
NL V V+D + G++ D+E I+S C
Sbjct: 148 NLKAVQTLVLDEADRMVDMGFYEDIEG-IVSAC 179
>gi|238023679|ref|YP_002907911.1| ATP-dependent RNA helicase DbpA [Burkholderia glumae BGR1]
gi|237878344|gb|ACR30676.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
Length = 465
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ V +++C TRE
Sbjct: 28 YLEMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDARRFEVQAMILCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ L+ H IV
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTASLE-HGAHIV 131
>gi|78063799|ref|YP_373707.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
gi|77971684|gb|ABB13063.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
Length = 465
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARRFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H IV
Sbjct: 87 LADQVTQEVRRLARAEENVKVLTLCGGTPMRPQTQSLE-HGAHIV 130
>gi|345022779|ref|ZP_08786392.1| ATP-dependent RNA helicase [Ornithinibacillus scapharcae TW25]
Length = 490
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E T Q E IP A+ G D++ QA++G GKTA F + L++++T+ V LV+
Sbjct: 18 EKMGFEEATPIQSETIPLALAGHDVIGQAQTGTGKTAAFGIPMLEKVDTSARKVQGLVVA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q+++E R ++ ++V +GG P+ + LK PQIV
Sbjct: 78 PTRELAIQVAEELNRLGRF-KGVRVLPVYGGAPMDRQIRSLK-DGPQIV 124
>gi|73539745|ref|YP_294265.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha JMP134]
gi|72117158|gb|AAZ59421.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha JMP134]
Length = 474
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D++ QAK+G GKTA F LA L +L+ +V +V+C TRE
Sbjct: 37 YDEMTPIQAASLPLTLAGHDLIAQAKTGSGKTAAFALALLHRLDARRFDVQAMVLCPTRE 96
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ N+KV GG P++ PQ+ LV+ + G
Sbjct: 97 LADQVTQEIRRLARAEENVKVLTLCGGSPMR----------PQVDSLVHGAHVVVGTPGR 146
Query: 154 VMD 156
++D
Sbjct: 147 ILD 149
>gi|425066915|ref|ZP_18470031.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW6]
gi|425073652|ref|ZP_18476758.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW4]
gi|404594923|gb|EKA95478.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW4]
gi|404601586|gb|EKB01978.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW6]
Length = 457
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ+++ N LV+C TRELA Q
Sbjct: 27 TPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKQFNTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTH 133
++ E R ++++ NIK+ GG+P IQ+D H
Sbjct: 87 VANELRRLARFLPNIKILTLCGGVPFSIQRDSLIHAAH 124
>gi|186474785|ref|YP_001856255.1| ATP-dependent RNA helicase DbpA [Burkholderia phymatum STM815]
gi|184191244|gb|ACC69209.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 463
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ V +V+C TRE
Sbjct: 26 YADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRYAVQAMVLCPTRE 85
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ NIKV GG P++ PQ L + + G
Sbjct: 86 LADQVTQEIRRLARAEENIKVLTLCGGTPMR----------PQTASLEHGAHIVVGTPGR 135
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+MD + G LD L L+L +
Sbjct: 136 IMDHLERGSLSLDALNTLVLDEA 158
>gi|161521775|ref|YP_001585202.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
17616]
gi|189352063|ref|YP_001947690.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
17616]
gi|221210620|ref|ZP_03583600.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
gi|160345825|gb|ABX18910.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189336085|dbj|BAG45154.1| ATP-independent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|221169576|gb|EEE02043.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
Length = 464
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ N+KV GG P++ + L+ H IV G +++
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV------VGTPGRIMD 139
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+D G LD L L+L +
Sbjct: 140 HLD--RGNLQLDALNTLVLDEA 159
>gi|421476106|ref|ZP_15924020.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400228975|gb|EJO58858.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 464
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ N+KV GG P++ + L+ H IV G +++
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV------VGTPGRIMD 139
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+D G LD L L+L +
Sbjct: 140 HLD--RGNLQLDALNTLVLDEA 159
>gi|421494374|ref|ZP_15941723.1| DBPA [Morganella morganii subsp. morganii KT]
gi|400191370|gb|EJO24517.1| DBPA [Morganella morganii subsp. morganii KT]
Length = 432
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAGHFMTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++Y+ NIK+ GG+P + L H P I+
Sbjct: 62 VAGELRRLARYLPNIKILTLCGGVPFGAQRDSL-IHPPHII 101
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 65/110 (59%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E + E T Q + IP + G DI+ QA++G GKTA F + TL++++ + + L++C
Sbjct: 20 EELGYEEATPIQAKTIPIILQGKDIIGQAQTGTGKTAAFGIPTLERIDPSKKTIQALILC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
TRELA Q+S+E ++ SKY I + +GG I++ + LK I+G
Sbjct: 80 PTRELAIQVSEELKKLSKYKKAIGILPIYGGQSIERQIQSLKKGVNIIIG 129
>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
Length = 457
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ+++ N LV+C TRELA Q
Sbjct: 27 TPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKQFNTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTH 133
++ E R ++++ NIK+ GG+P IQ+D H
Sbjct: 87 VANELRRLARFLPNIKILTLCGGVPFSIQRDSLIHAAH 124
>gi|210614158|ref|ZP_03290078.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
gi|210150802|gb|EEA81810.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
Length = 530
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G DI+ QA++G GKTA F + LQ+++ + + +V+C TRE
Sbjct: 24 FEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLLQKVDPKNKKLQGIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q++ E +KYM IKV +GG I K LK+ I+G
Sbjct: 84 LAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQIIIG 129
>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
Length = 457
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ+++ N LV+C TRELA Q
Sbjct: 27 TPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKQFNTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLP--IQKDEEYLKTH 133
++ E R ++++ NIK+ GG+P IQ+D H
Sbjct: 87 VANELRRLARFLPNIKILTLCGGVPFSIQRDSLIHAAH 124
>gi|427440715|ref|ZP_18924987.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
gi|425787422|dbj|GAC45775.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
Length = 511
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q E IP + G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRE
Sbjct: 21 YDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIVSPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q E + KY KV V +GG I++ LK+H PQIV
Sbjct: 81 LAAQTQAEIFKLGKY-KRAKVQVVYGGADIRRQINALKSH-PQIV 123
>gi|407685428|ref|YP_006800602.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str.
'English Channel 673']
gi|407247039|gb|AFT76225.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str.
'English Channel 673']
Length = 459
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+SQ + + Q + +P+A+ G D++ QA++G GKT FV+ LQ +E D +++C
Sbjct: 20 DSQGIYQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVIPALQHVEVNDFTTQAIILC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV----GLV---- 141
TRELA Q++++ +K + NIKV GG P+ + LK H+P I+ G V
Sbjct: 80 PTRELADQVAQQCRMAAKNIGNIKVTTLCGGQPMGPQIQSLK-HSPHIIVGTPGRVMDHV 138
Query: 142 -NYETNLSGVVVNVMD 156
+LS V + V+D
Sbjct: 139 EKRRVDLSNVKLRVLD 154
>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|418069818|ref|ZP_12707095.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|357536349|gb|EHJ20380.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
Length = 511
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q E IP + G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRE
Sbjct: 21 YDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIVSPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q E + KY KV V +GG I++ LK+H PQIV
Sbjct: 81 LAAQTQAEIFKLGKY-KRAKVQVVYGGADIRRQINALKSH-PQIV 123
>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
Length = 511
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q E IP + G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRE
Sbjct: 21 YDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIVSPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q E + KY KV V +GG I++ LK+H PQIV
Sbjct: 81 LAAQTQAEIFKLGKY-KRAKVQVVYGGADIRRQINALKSH-PQIV 123
>gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
Length = 464
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ N+KV GG P++ + L+ H IV G +++
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV------VGTPGRIMD 139
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+D G LD L L+L +
Sbjct: 140 HLD--RGNLQLDALNTLVLDEA 159
>gi|300716861|ref|YP_003741664.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
gi|299062697|emb|CAX59817.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
Length = 459
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q +P + G D+ QAK+G GKTA F L L +++ T LV+C TRE
Sbjct: 23 YHTMTPVQAAALPAILEGKDVRAQAKTGSGKTAAFGLGVLHRIDVTQFVTQSLVLCPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++KE R +++ +NIK+ GG P+ + L H P IV
Sbjct: 83 LADQVAKELRRLARFAANIKILTLCGGQPMGAQRDSL-VHAPHIV 126
>gi|435853849|ref|YP_007315168.1| DNA/RNA helicase, superfamily II [Halobacteroides halobius DSM
5150]
gi|433670260|gb|AGB41075.1| DNA/RNA helicase, superfamily II [Halobacteroides halobius DSM
5150]
Length = 527
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E T Q + IP + G D++ QA++G GKTA F + L++++ +V L++C
Sbjct: 20 EDMGFEEATPIQSQAIPHLLTGKDVIGQAQTGTGKTAAFGIPVLEKVDPNSKDVQALILC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
TRELA Q+S+E R KY + I +GG I + + LK ++G
Sbjct: 80 PTRELAIQVSEELGRLGKYKNKITTLPIYGGQSIGRQIKALKKGVQVVIG 129
>gi|456864614|gb|EMF83013.1| DEAD/DEAH box helicase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 533
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + DI+ A++G GKTA F + T++ LE ++ L++C TRE
Sbjct: 24 FEEASPIQSEAIPVILKRKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
L Q+S+++ + KY N +V +GG I++ + L+ NPQIV
Sbjct: 84 LVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALR-KNPQIV 127
>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991428|gb|EEC57434.1| DEAD/DEAH box helicase [[Bacteroides] pectinophilus ATCC 43243]
Length = 559
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G DI+ QA++G GKTA + + LQ ++ V +V+C TRE
Sbjct: 46 FEEASPIQAKAIPVVLEGKDIVGQAQTGTGKTAAYGIPMLQSIDPKLKCVQAVVLCPTRE 105
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q++ E + +KYMS+IKV +GG I + + LKT +VG
Sbjct: 106 LAIQVADEIRKLAKYMSSIKVLPVYGGQEIVRQIKSLKTGVQIVVG 151
>gi|407708172|ref|YP_006831757.1| hypothetical protein MC28_4936 [Bacillus thuringiensis MC28]
gi|407385857|gb|AFU16358.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
MC28]
Length = 507
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T V +V+
Sbjct: 18 ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTRKEAVQGIVIA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+ +E + K+ +++ +GG I + LK H IVG +N
Sbjct: 78 PTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 136
Query: 143 YET----NLSGVVVNVMD-VRSGGWWLDLEALI 170
+T N+ VV++ D + + G+ D+EA++
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
>gi|421468182|ref|ZP_15916745.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400232471|gb|EJO62086.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 464
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ N+KV GG P++ + L+ H IV G +++
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHIV------VGTPGRIMD 139
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+D G LD L L+L +
Sbjct: 140 HLD--RGNLHLDALNTLVLDEA 159
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F++ T Q E IP A+ G DI+ A++G GKTA F + LQQL + ++ L++ TRE
Sbjct: 102 FKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPILQQLLQSPQPLFALILSPTRE 161
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LAFQIS+++E + +K GV GG+ + + L IVG
Sbjct: 162 LAFQISQQFEALGAVIG-VKCGVLVGGMDVMQQAMVLARKPHIIVG 206
>gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 467
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95
E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ + +V+C TRELA
Sbjct: 31 EMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARKFDTQAMVLCPTRELA 90
Query: 96 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
Q+++E R ++ NIKV GG P++ L+ H +V
Sbjct: 91 DQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLE-HGAHVV 132
>gi|332284754|ref|YP_004416665.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
gi|330428707|gb|AEC20041.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
Length = 444
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
++ T Q + +P + G D++ QAK+G GKTA F L + +L+ N+ LV+C TRE
Sbjct: 6 YQAMTLIQAQSLPLILAGQDLIAQAKTGSGKTAAFGLGIVHKLDPGAYNIQALVLCPTRE 65
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
L+ Q++ E R ++ + NIKV GG PI+ E LK +VG
Sbjct: 66 LSEQVANELRRLARAIGNIKVITLCGGTPIRPQIESLKFGAHIVVG 111
>gi|225374820|ref|ZP_03752041.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
16841]
gi|225213389|gb|EEG95743.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
16841]
Length = 531
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP + G+D++ QA++G GKTA F + L +++ + V+++ TRE
Sbjct: 24 FEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNNKKTQVIILSPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+S+E + SKYM +K+ +GG I + + LK I+G
Sbjct: 84 LAIQVSEEIRKLSKYMHGVKILPVYGGQDINRQIKALKGGAQIIIG 129
>gi|455739448|ref|YP_007505714.1| ATP-dependent RNA helicase DbpA [Morganella morganii subsp.
morganii KT]
gi|455421011|gb|AGG31341.1| ATP-dependent RNA helicase DbpA [Morganella morganii subsp.
morganii KT]
Length = 457
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAGHFMTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++Y+ NIK+ GG+P + L H P I+
Sbjct: 87 VAGELRRLARYLPNIKILTLCGGVPFGAQRDSL-IHPPHII 126
>gi|410085992|ref|ZP_11282706.1| ATP-dependent RNA helicase DbpA [Morganella morganii SC01]
gi|409767540|gb|EKN51616.1| ATP-dependent RNA helicase DbpA [Morganella morganii SC01]
Length = 457
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAGHFMTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++Y+ NIK+ GG+P + L H P I+
Sbjct: 87 VAGELRRLARYLPNIKILTLCGGVPFGAQRDSL-IHPPHII 126
>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
Length = 469
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q E +P + G D++ QAK+G GKTA F + L++L+ V LV+C TRE
Sbjct: 35 YTSMTPIQAESLPWVLAGRDLIAQAKTGSGKTAAFGIGLLEKLQVDSFAVQALVLCPTRE 94
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE R +++ NIK+ GG+ I PQ+ L + G
Sbjct: 95 LADQVAKELRRLARFTHNIKILTLCGGVAI----------GPQLGSLERGAHIVVGTPGR 144
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
++D +R G LD L+ L+L +
Sbjct: 145 IVDHLRKGSLHLDRLQQLVLDEA 167
>gi|375090043|ref|ZP_09736362.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG
37842]
gi|374565936|gb|EHR37191.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG
37842]
Length = 499
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP A+ G D++ QA++G GKTA F L LQ L+ S + LV+ TRE
Sbjct: 21 FEEPTPIQQQAIPLALQGKDLIGQAQTGTGKTAAFGLPLLQHLDRNQSAIQGLVVTPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+ +E R K + +V V +GG + K E +K PQI+
Sbjct: 81 LAIQVQEELYRLGKGV-RARVYVVYGGTSLSKQIERIKRQQPQII 124
>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
Length = 515
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L L++++ + +V V+++ TRE
Sbjct: 23 FEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + ++Y +NI +GG I + LK NPQI+
Sbjct: 83 LAIQVAEELNKMAQY-TNITALPIYGGQDINRQFRALK-KNPQII 125
>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
Length = 515
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L L++++ + +V V+++ TRE
Sbjct: 23 FEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + ++Y +NI +GG I + LK NPQI+
Sbjct: 83 LAIQVAEELNKMAQY-TNITALPIYGGQDINRQFRALK-KNPQII 125
>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|416998583|ref|ZP_11939344.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
gi|333977481|gb|EGL78339.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
Length = 515
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L L++++ + +V V+++ TRE
Sbjct: 23 FEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + ++Y +NI +GG I + LK NPQI+
Sbjct: 83 LAIQVAEELNKMAQY-TNITALPIYGGQDINRQFRALK-KNPQII 125
>gi|300692366|ref|YP_003753361.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
solanacearum PSI07]
gi|299079426|emb|CBJ52099.2| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
solanacearum PSI07]
Length = 471
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +V+C TRE
Sbjct: 34 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQAMVLCPTRE 93
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ L+ H +V
Sbjct: 94 LADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLE-HGAHVV 137
>gi|423456146|ref|ZP_17432999.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
gi|401131812|gb|EJQ39461.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
Length = 520
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T V +V+
Sbjct: 18 ESMGFEEATPIQAETIPYALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+ +E + K+ +++ +GG I + LK H IVG +N
Sbjct: 78 PTRELAIQVGEELYKLGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 136
Query: 143 YET----NLSGVVVNVMD-VRSGGWWLDLEALI 170
+T N+ VV++ D + + G+ D+EA++
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
>gi|300971643|ref|ZP_07171516.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
gi|301046191|ref|ZP_07193365.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
gi|422361854|ref|ZP_16442443.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
gi|300301848|gb|EFJ58233.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
gi|300411129|gb|EFJ94667.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
gi|315295345|gb|EFU54675.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
Length = 432
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|344173822|emb|CCA89005.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
syzygii R24]
Length = 465
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +V+C TRE
Sbjct: 28 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQAMVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ L+ H +V
Sbjct: 88 LADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTASLE-HGAHVV 131
>gi|331657397|ref|ZP_08358359.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
gi|432898216|ref|ZP_20109047.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE192]
gi|433028317|ref|ZP_20216183.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE109]
gi|331055645|gb|EGI27654.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
gi|431428943|gb|ELH10884.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE192]
gi|431544514|gb|ELI19334.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE109]
Length = 457
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
TS Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDVSLFQTQGLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
Length = 521
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L L++++ + +V V+++ TRE
Sbjct: 23 FEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + ++Y +NI +GG I + LK NPQI+
Sbjct: 83 LAIQVAEELNKMAQY-TNITALPIYGGQDINRQFRALK-KNPQII 125
>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
Length = 523
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L L++++ + +V V+++ TRE
Sbjct: 23 FEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + ++Y +NI +GG I + LK NPQI+
Sbjct: 83 LAIQVAEELNKMAQY-TNITALPIYGGQDINRQFRALK-KNPQII 125
>gi|416336025|ref|ZP_11672673.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
gi|433197982|ref|ZP_20381898.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE94]
gi|320195643|gb|EFW70268.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
gi|431723919|gb|ELJ87863.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE94]
Length = 457
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|422371069|ref|ZP_16451454.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
gi|315297174|gb|EFU56454.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
Length = 432
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
TS Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDVSLFQTQGLVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|26247679|ref|NP_753719.1| ATP-dependent RNA helicase DbpA [Escherichia coli CFT073]
gi|26108081|gb|AAN80281.1|AE016760_140 ATP-independent RNA helicase dbpA [Escherichia coli CFT073]
Length = 457
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|406027401|ref|YP_006726233.1| DEAD/DEAH box helicase [Lactobacillus buchneri CD034]
gi|405125890|gb|AFS00651.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus buchneri
CD034]
Length = 506
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP + G D++ QA++G GKTA F L LQ+++ + NV L++ TRE
Sbjct: 21 FEEATPIQAETIPMVLKGEDVIGQAQTGTGKTAAFGLPILQKIDFDNPNVQALIISPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q +E R K KV V +GG I++ LK H PQIV
Sbjct: 81 LAIQTQEEIYRLGKD-EKAKVQVVYGGADIRRQINALKGH-PQIV 123
>gi|432568381|ref|ZP_19804901.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE53]
gi|431101575|gb|ELE06491.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE53]
Length = 457
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E + Q + IP + G D++ QA++G GKTA F + L+ ++ + + +V+C TRE
Sbjct: 24 YEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILENIDRDNRKLQAIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
LA Q+S+E + +KYM I+ +GG PI + + LK
Sbjct: 84 LAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQIKALK 121
>gi|227886220|ref|ZP_04004025.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
gi|386629118|ref|YP_006148838.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. 'clone D
i2']
gi|386634038|ref|YP_006153757.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. 'clone D
i14']
gi|386638913|ref|YP_006105711.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
gi|432411598|ref|ZP_19654270.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE39]
gi|432431540|ref|ZP_19673976.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE187]
gi|432436399|ref|ZP_19678790.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE188]
gi|432456372|ref|ZP_19698566.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE201]
gi|432495347|ref|ZP_19737155.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE214]
gi|432504116|ref|ZP_19745849.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE220]
gi|432523536|ref|ZP_19760670.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE230]
gi|432607257|ref|ZP_19843448.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE67]
gi|432650823|ref|ZP_19886582.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE87]
gi|432783321|ref|ZP_20017504.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE63]
gi|432844056|ref|ZP_20077110.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE141]
gi|432978046|ref|ZP_20166869.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE209]
gi|432995102|ref|ZP_20183716.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE218]
gi|432999625|ref|ZP_20188158.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE223]
gi|433057682|ref|ZP_20244759.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE124]
gi|433086949|ref|ZP_20273339.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE137]
gi|433115259|ref|ZP_20301070.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE153]
gi|433124882|ref|ZP_20310463.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE160]
gi|433138942|ref|ZP_20324220.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE167]
gi|433148883|ref|ZP_20333927.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE174]
gi|433207473|ref|ZP_20391165.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE97]
gi|433212244|ref|ZP_20395852.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE99]
gi|442607758|ref|ZP_21022523.1| ATP-dependent RNA helicase [Escherichia coli Nissle 1917]
gi|227836424|gb|EEJ46890.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
gi|307553405|gb|ADN46180.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
gi|355420017|gb|AER84214.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. 'clone D
i2']
gi|355424937|gb|AER89133.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. 'clone D
i14']
gi|430936098|gb|ELC56392.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE39]
gi|430954615|gb|ELC73485.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE187]
gi|430963410|gb|ELC80995.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE188]
gi|430983893|gb|ELD00549.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE201]
gi|431025484|gb|ELD38588.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE214]
gi|431040984|gb|ELD51518.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE220]
gi|431053682|gb|ELD63287.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE230]
gi|431139603|gb|ELE41399.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE67]
gi|431192562|gb|ELE91912.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE87]
gi|431330688|gb|ELG17955.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE63]
gi|431396061|gb|ELG79549.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE141]
gi|431481557|gb|ELH61271.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE209]
gi|431509315|gb|ELH87586.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE218]
gi|431511998|gb|ELH90127.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE223]
gi|431572821|gb|ELI45646.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE124]
gi|431607943|gb|ELI77297.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE137]
gi|431636109|gb|ELJ04277.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE153]
gi|431648147|gb|ELJ15547.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE160]
gi|431663225|gb|ELJ29988.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE167]
gi|431673627|gb|ELJ39848.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE174]
gi|431731674|gb|ELJ95174.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE97]
gi|431735479|gb|ELJ98838.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE99]
gi|441711230|emb|CCQ08500.1| ATP-dependent RNA helicase [Escherichia coli Nissle 1917]
Length = 457
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a]
gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
ED1a]
Length = 457
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|355571182|ref|ZP_09042434.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
gi|354825570|gb|EHF09792.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
Length = 441
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q IP G D++ QA +G GKTA F + L+ LE V LV+C TRE
Sbjct: 24 FEEPTPIQSLAIPVIREGHDMVGQAHTGTGKTAAFGIPLLEMLEPDRPAVQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK--------THNPQIVGLVNYET 145
LA Q+S+E + ++YM + V +GG PI++ L+ T + L
Sbjct: 84 LAIQVSEELRKLARYMGGVSVLPVYGGQPIERQVAVLRKGVHVVIATPGRLLDHLSRRTV 143
Query: 146 NLSGVVVNVMD 156
+LS V V V+D
Sbjct: 144 DLSQVRVTVLD 154
>gi|432592524|ref|ZP_19828850.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE60]
gi|431131365|gb|ELE33444.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE60]
Length = 457
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|227114116|ref|ZP_03827772.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 460
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P + G D+ +AK+G GKTA F + L ++ +D LV+C TRE
Sbjct: 24 YTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + + L H P IV
Sbjct: 84 LADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL-VHAPHIV 127
>gi|373465275|ref|ZP_09556749.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus kisonensis
F0435]
gi|371760939|gb|EHO49597.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus kisonensis
F0435]
Length = 508
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90
S F E T Q E IP + G D++ QA++G GKTA F L LQ+++ + NV L++
Sbjct: 18 SSGFEEATPIQAETIPMVLKGQDVIGQAQTGTGKTAAFGLPILQKIDFDNPNVQALIISP 77
Query: 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q +E R K +V V +GG I++ LK H PQI+
Sbjct: 78 TRELAIQTQEEIYRLGKD-EKARVQVVYGGADIRRQINSLKDH-PQII 123
>gi|403059355|ref|YP_006647572.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402806681|gb|AFR04319.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 460
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P + G D+ +AK+G GKTA F + L ++ +D LV+C TRE
Sbjct: 24 YTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + + L H P IV
Sbjct: 84 LADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL-VHAPHIV 127
>gi|385870891|gb|AFI89411.1| ATP-independent RNA helicase DbpA [Pectobacterium sp. SCC3193]
Length = 490
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P + G D+ +AK+G GKTA F + L ++ +D LV+C TRE
Sbjct: 54 YTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRE 113
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + + L H P IV
Sbjct: 114 LADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL-VHAPHIV 157
>gi|336433582|ref|ZP_08613399.1| hypothetical protein HMPREF0991_02518 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336016018|gb|EGN45815.1| hypothetical protein HMPREF0991_02518 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 527
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G D++ QA++G GKTA F + L++++ + + +V+C TRE
Sbjct: 24 FEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGIPLLEKIDPKNKKLQAIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E +KYM IKV +GG I K LK+ ++G
Sbjct: 84 LAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLVIG 129
>gi|387904318|ref|YP_006334656.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. KJ006]
gi|387579210|gb|AFJ87925.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. KJ006]
Length = 465
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H +V
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHVV 130
>gi|134292614|ref|YP_001116350.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
gi|134135771|gb|ABO56885.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
Length = 465
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V +++C TRE
Sbjct: 27 YVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRE 86
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ N+KV GG P++ + L+ H +V
Sbjct: 87 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLE-HGAHVV 130
>gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase [Lactobacillus buchneri NRRL B-30929]
gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 506
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP + G D++ QA++G GKTA F L LQ+++ + NV L++ TRE
Sbjct: 21 FEEATPIQGETIPMVLKGEDVIGQAQTGTGKTAAFGLPILQKIDFDNPNVQALIISPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q +E R K KV V +GG I++ LK H PQIV
Sbjct: 81 LAIQTQEEIYRLGKD-EKAKVQVVYGGADIRRQINALKGH-PQIV 123
>gi|261820728|ref|YP_003258834.1| ATP-dependent RNA helicase DbpA [Pectobacterium wasabiae WPP163]
gi|261604741|gb|ACX87227.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
Length = 490
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P + G D+ +AK+G GKTA F + L ++ +D LV+C TRE
Sbjct: 54 YTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRE 113
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + + L H P IV
Sbjct: 114 LADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL-VHAPHIV 157
>gi|253689218|ref|YP_003018408.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251755796|gb|ACT13872.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 460
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P + G D+ +AK+G GKTA F + L ++ +D LV+C TRE
Sbjct: 24 YTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + + L H P IV
Sbjct: 84 LADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL-VHAPHIV 127
>gi|402842186|ref|ZP_10890610.1| ATP-independent RNA helicase DbpA [Klebsiella sp. OBRC7]
gi|423102714|ref|ZP_17090416.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5242]
gi|376388190|gb|EHT00891.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5242]
gi|402280863|gb|EJU29563.1| ATP-independent RNA helicase DbpA [Klebsiella sp. OBRC7]
Length = 457
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHVDASLFQTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R +++M+NIK+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFMANIKILTLCGGQPFGAQRDSLQ-HAPHII 126
>gi|257141454|ref|ZP_05589716.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
Length = 465
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ AKSG GKTA F LA L +L+ +V LV+C TRELA Q
Sbjct: 32 TPIQAASLPIALAGHDLITHAKSGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQ 91
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 92 VAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 133
>gi|167757993|ref|ZP_02430120.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
gi|167664425|gb|EDS08555.1| DEAD/DEAH box helicase [Clostridium scindens ATCC 35704]
Length = 526
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G DI+ QA++G GKTA F + L++++ + + +V+C TRE
Sbjct: 24 FEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGIPLLEKIDPKNKKLQAIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E +KYM IKV +GG I K LK+ I+G
Sbjct: 84 LAIQVAEEIRNLAKYMHAIKVLPIYGGQEIVKQIRSLKSGTQLIIG 129
>gi|375260599|ref|YP_005019769.1| ATP-dependent RNA helicase DbpA [Klebsiella oxytoca KCTC 1686]
gi|397657702|ref|YP_006498404.1| ATP-dependent RNA helicase DbpA [Klebsiella oxytoca E718]
gi|365910077|gb|AEX05530.1| ATP-dependent RNA helicase DbpA [Klebsiella oxytoca KCTC 1686]
gi|394346118|gb|AFN32239.1| ATP-dependent RNA helicase DbpA [Klebsiella oxytoca E718]
Length = 457
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHVDASLFQTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R +++M+NIK+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFMANIKILTLCGGQPFGAQRDSLQ-HAPHII 126
>gi|410863319|ref|YP_006978553.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii AltDE1]
gi|410820581|gb|AFV87198.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii AltDE1]
Length = 459
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+SQ + + Q + +P+A+ G D++ QA++G GKT FV+ L+++E D + +++C
Sbjct: 20 DSQGIHQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVIPALEKIEVNDFSTQAIMLC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++++ +K + NIKV GG P+ + LK H+P I+
Sbjct: 80 PTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSLK-HSPHII 127
>gi|421080223|ref|ZP_15541157.1| ATP-independent RNA helicase DbpA [Pectobacterium wasabiae CFBP
3304]
gi|401705076|gb|EJS95265.1| ATP-independent RNA helicase DbpA [Pectobacterium wasabiae CFBP
3304]
Length = 490
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P + G D+ +AK+G GKTA F + L ++ +D LV+C TRE
Sbjct: 54 YTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRE 113
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + + L H P IV
Sbjct: 114 LADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL-VHAPHIV 157
>gi|449328193|gb|AGE94494.1| ATP-dependent RNA helicase DbpA [Citrobacter amalonaticus Y19]
Length = 457
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q E +P + G D+ QAK+G GKTA F L LQ ++ T LV+C TRELA Q
Sbjct: 27 TPVQAEALPAILAGQDVRVQAKTGSGKTAAFGLGLLQHIDVTLFQTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ-HAPHII 126
>gi|383318188|ref|YP_005379030.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379045292|gb|AFC87348.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 458
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q +P + G D++ QA++G GKTA F L LQQLE + LV+C TRE
Sbjct: 22 YASMTPVQTASLPAMLDGRDLIAQARTGGGKTAAFGLGLLQQLEVDTIRLQGLVLCPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++K + + + N+K+ GG+P+ L +H+P IV
Sbjct: 82 LADQVAKSLRKLAAAIPNVKILTLCGGMPLGPQLASL-SHDPHIV 125
>gi|452993077|emb|CCQ95421.1| DEAD/DEAH box helicase domain protein [Clostridium ultunense Esp]
Length = 569
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 64/106 (60%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP+ + G+DI+ QA++G GKTA F + +++ D ++ +V+C TRE
Sbjct: 64 FEEMSPIQSQAIPKLLEGIDIIGQAQTGTGKTAAFGIPIIEKCNGKDRSLQAMVLCPTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
L+ Q+++E R +KY +I V +GG PI + + LK +VG
Sbjct: 124 LSIQVAEEIRRLAKYKRDIFVLPIYGGQPIDRQIKALKKGVQIVVG 169
>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
5219]
Length = 431
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 26 DRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYV 85
+R E F E T Q + IP + G D++ QA++G GKTA F + L+ L+ V V
Sbjct: 16 ERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIPALEMLDVKSKKVQV 75
Query: 86 LVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQK 125
LV+C TRELA Q+++E + +KY N K+ +GG PI +
Sbjct: 76 LVLCPTRELANQVAEEMSKLAKY-QNTKMLPVYGGQPIDR 114
>gi|358053682|ref|ZP_09147418.1| putative helicase [Staphylococcus simiae CCM 7213]
gi|357256869|gb|EHJ07190.1| putative helicase [Staphylococcus simiae CCM 7213]
Length = 507
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F+E T Q + IP A+ G+DIL QA++G GKT F + ++++ V L++
Sbjct: 18 ESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++++ FS+ N++V FGG+PI++ + LK PQIV
Sbjct: 77 PTRELAMQVAEQLREFSRG-QNVQVVTVFGGMPIERQIKALK-KGPQIV 123
>gi|410642694|ref|ZP_11353203.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
gi|410137577|dbj|GAC11390.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
Length = 459
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S F + T Q + +P + G D++ +AK+G GKTA F LA L L+ V LVMC
Sbjct: 19 QSMGFSQMTDIQADTLPAILAGRDVVAKAKTGSGKTAAFGLALLHNLDVKRFRVQALVMC 78
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q++ E R + + NIKV GG P+ PQI L + + G
Sbjct: 79 PTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPM----------GPQIGSLEHGAHIIVG 128
Query: 150 VVVNVMD 156
+MD
Sbjct: 129 TPGRIMD 135
>gi|425288207|ref|ZP_18679089.1| ATP-independent RNA helicase dbpA [Escherichia coli 3006]
gi|408216028|gb|EKI40381.1| ATP-independent RNA helicase dbpA [Escherichia coli 3006]
Length = 457
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQIQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|424905824|ref|ZP_18329327.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43]
gi|390928717|gb|EIP86121.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43]
Length = 559
Score = 79.0 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRE
Sbjct: 122 YTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRE 181
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 182 LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 227
>gi|326796106|ref|YP_004313926.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326546870|gb|ADZ92090.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 460
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F+ T Q +C+P + G D+L QA++G GKT F + L ++ + L+MC TRE
Sbjct: 25 FKGFTPVQEQCLPDILEGKDLLAQAQTGSGKTLAFAIGLLLRINPRYFSTQALIMCPTRE 84
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP 122
LA Q++KE R +++M+NIKV GG+P
Sbjct: 85 LADQVAKEIRRVARFMNNIKVLTLCGGMP 113
>gi|432530728|ref|ZP_19767763.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE233]
gi|431055869|gb|ELD65407.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE233]
Length = 457
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQIQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
Length = 520
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP+A+ G+D++ QA++G GKTA F L LQ+++ + V LV+ TRE
Sbjct: 32 FEEATPIQAQTIPKALQGLDVIGQAQTGTGKTAAFGLPMLQKIDPSKKGVQGLVIAPTRE 91
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q +E R + I+V +GG I + LK NPQIV
Sbjct: 92 LAIQTQEELFRLGRD-KKIRVQAVYGGADINRQIRQLK-ENPQIV 134
>gi|154504732|ref|ZP_02041470.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
gi|153794906|gb|EDN77326.1| DEAD/DEAH box helicase [Ruminococcus gnavus ATCC 29149]
Length = 550
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G D++ QA++G GKTA F + L++++ + + +V+C TRE
Sbjct: 47 FEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGIPLLEKIDPKNKKLQAIVLCPTRE 106
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E +KYM IKV +GG I K LK+ ++G
Sbjct: 107 LAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLVIG 152
>gi|410645968|ref|ZP_11356422.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola agarilytica
NO2]
gi|410134307|dbj|GAC04821.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola agarilytica
NO2]
Length = 459
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S F + T Q + +P + G D++ +AK+G GKTA F LA L L+ V LVMC
Sbjct: 19 QSMGFSQMTDIQADTLPAILAGRDVVAKAKTGSGKTAAFGLALLHNLDVKRFRVQALVMC 78
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q++ E R + + NIKV GG P+ PQI L + + G
Sbjct: 79 PTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPM----------GPQIGSLEHGAHIIVG 128
Query: 150 VVVNVMD 156
+MD
Sbjct: 129 TPGRIMD 135
>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
Length = 498
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 15/155 (9%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q + IP + G D++ QA++G GKTA F L ++ ++T + N+ L++ TRE
Sbjct: 21 YEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHVDTDNPNIQALIISPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI-VGL-------VNYET 145
LA Q +E R K +++V V +GG I++ + LK H+PQI VG +N T
Sbjct: 81 LAIQTQEELYRLGK-DKHVRVQVVYGGADIRRQIKSLK-HHPQILVGTPGRLRDHINRHT 138
Query: 146 ----NLSGVVVNVMD-VRSGGWWLDLEALILSKCA 175
++ +V++ D + + G+ D+EA+I A
Sbjct: 139 VKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPA 173
>gi|90409951|ref|ZP_01217968.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
3TCK]
gi|90329304|gb|EAS45561.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
3TCK]
Length = 462
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q + +P + G D++ Q K+G GKTA F L L++L V LV+C TRE
Sbjct: 24 YESMTPIQAQSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEKLNVKRFRVQSLVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE + ++ + NIKV GG+P PQI L + + G
Sbjct: 84 LADQVAKEIRKLARTIHNIKVLTLCGGMPF----------GPQIGSLEHGAHIIVGTPGR 133
Query: 154 VMD-VRSGGWWL-DLEALILSKC 174
+ + VR G L DLE LIL +
Sbjct: 134 IEEHVRKGTLNLDDLEMLILDEA 156
>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
Length = 519
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 13/149 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T V +V+ TRE
Sbjct: 3 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIAPTRE 62
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VNYET- 145
LA Q+ +E + K+ +++ +GG I + LK H IVG +N +T
Sbjct: 63 LAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTL 121
Query: 146 ---NLSGVVVNVMD-VRSGGWWLDLEALI 170
N+ VV++ D + + G+ D+EA++
Sbjct: 122 RLQNVETVVLDEADEMLNMGFIEDIEAIL 150
>gi|424777568|ref|ZP_18204529.1| ATP-dependent RNA helicase DbpA [Alcaligenes sp. HPC1271]
gi|422887351|gb|EKU29755.1| ATP-dependent RNA helicase DbpA [Alcaligenes sp. HPC1271]
Length = 466
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + T+ Q + +P + G D++ QAK+G GKTA F L LQ L + LV+C TRE
Sbjct: 28 FEKMTAIQEQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLQTLNPSKLTPQALVICPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q++ E R ++ + N+++ GG+P + E L+ +VG
Sbjct: 88 LADQVTTELRRLARQIPNVRMLTLCGGVPSRPQTEALRNGAHVVVG 133
>gi|255639223|gb|ACU19910.1| unknown [Glycine max]
Length = 124
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 42/53 (79%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 86
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V +L
Sbjct: 65 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVELL 117
>gi|193222330|emb|CAL61847.2| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 464
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE TS Q + +P + D++ QAK+G GKTA F + LQ+L T + LV+C TRE
Sbjct: 24 YREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQKLNPTWFAIQGLVICPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S E R +++ NIK+ GG P++ L+ H IV
Sbjct: 84 LADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLE-HGAHIV 127
>gi|91786555|ref|YP_547507.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
gi|91695780|gb|ABE42609.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
Length = 468
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 57/102 (55%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+LG D++ QAK+G GKTA F LA L L V +V+C TRELA Q
Sbjct: 30 TPIQAASLPVALLGKDLIAQAKTGSGKTAAFGLALLANLNARRFAVQAMVLCPTRELADQ 89
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
++ E R ++ NIKV GG+P++ L+ +VG
Sbjct: 90 VATEIRRLARAEENIKVVTLCGGVPLRNQVSSLQNGAHIVVG 131
>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
Length = 514
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRE
Sbjct: 3 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRE 62
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VNYET- 145
LA Q+ +E + K+ +++ +GG I + LK H IVG +N +T
Sbjct: 63 LAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTL 121
Query: 146 ---NLSGVVVNVMD-VRSGGWWLDLEALI 170
N+ VV++ D + + G+ D+EA++
Sbjct: 122 RLQNVETVVLDEADEMLNMGFIEDIEAIL 150
>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 527
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 62/113 (54%)
Query: 27 RIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 86
R E + E T Q + IP + G DI+ QA++G GKTA F + LQ+++ + +
Sbjct: 16 RAIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIPILQKIDPKVKGLQAV 75
Query: 87 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
++C TRELA Q+S E +FSK+M IK +GG I + LK ++G
Sbjct: 76 ILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLKAGVQIVIG 128
>gi|385262989|ref|ZP_10041086.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
gi|385188964|gb|EIF36434.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
Length = 525
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E + Q + IP A+ G D++ QA++G GKTA F L TL+++ T D+ + LV+
Sbjct: 17 EKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIHTEDATIQALVIA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q +E RF + +KV +GG I+K + LK+ +VG G
Sbjct: 77 PTRELAVQSQEELFRFGRS-KGVKVRSVYGGSSIEKQIKALKSGAHIVVG-------TPG 128
Query: 150 VVVNVMDVRSGGWWLDLEALILSKC 174
+++++ R D+E LIL +
Sbjct: 129 RLLDLIK-RKALKLQDIETLILDEA 152
>gi|401679335|ref|ZP_10811267.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219664|gb|EJO50527.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 523
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L L++++ ++ +V V+++ TRE
Sbjct: 23 FEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGSNRHVQVVILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + ++Y ++I +GG I + LK NPQI+
Sbjct: 83 LAIQVAEELNKMAQY-TDITALPIYGGQDINRQFRALK-KNPQII 125
>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
Length = 523
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L L++++ ++ +V V+++ TRE
Sbjct: 23 FEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGSNRHVQVVILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + ++Y ++I +GG I + LK NPQI+
Sbjct: 83 LAIQVAEELNKMAQY-TDITALPIYGGQDINRQFRALK-KNPQII 125
>gi|311106059|ref|YP_003978912.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
gi|310760748|gb|ADP16197.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
Length = 462
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + T Q + +P + G D++ QAK+G GKTA F L LQ+L+ T L++C TRE
Sbjct: 24 FEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQKLDPTRLTPQALLVCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYET 145
LA Q+++E R ++ ++N+K+ GG + E L +VG L
Sbjct: 84 LADQVAQELRRLARQIANVKILTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLERGSL 143
Query: 146 NLSGVVVNVMD 156
+LSG+ V+D
Sbjct: 144 DLSGLNTLVLD 154
>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-23m63]
gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
Length = 537
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G D++ QA++G GKTA F + L+ ++ + ++ +V+C TRE
Sbjct: 24 FEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILETIDPNNRSLQAVVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+S E + +KY IK +GG PI + + LK+ ++G
Sbjct: 84 LAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLKSGVQVVIG 129
>gi|126698341|ref|YP_001087238.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-66c26]
gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
107932]
gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
43255]
gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-76w55]
gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-97b34]
gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-37x79]
gi|260682458|ref|YP_003213743.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260686057|ref|YP_003217190.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-32g58]
gi|384360039|ref|YP_006197891.1| putative ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|423082109|ref|ZP_17070704.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|423085713|ref|ZP_17074155.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|423090412|ref|ZP_17078711.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|357549359|gb|EHJ31206.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|357549630|gb|EHJ31476.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|357556521|gb|EHJ38116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
Length = 537
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G D++ QA++G GKTA F + L+ ++ + ++ +V+C TRE
Sbjct: 24 FEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILETIDPNNRSLQAVVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+S E + +KY IK +GG PI + + LK+ ++G
Sbjct: 84 LAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLKSGVQVVIG 129
>gi|226325568|ref|ZP_03801086.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
gi|225206051|gb|EEG88405.1| DEAD/DEAH box helicase [Coprococcus comes ATCC 27758]
Length = 531
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP + G+D++ QA++G GKTA F + L++++ + +V+C TRE
Sbjct: 24 FEEASPIQAKAIPAMISGIDLIGQAQTGTGKTAAFGIPLLEKVDPKLKKLQAIVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q++ E S+YM IKV +GG I K LK+ ++G
Sbjct: 84 LAIQVADEIRNLSRYMHGIKVLPIYGGQDIVKQIRSLKSGTQIVIG 129
>gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
16294]
gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
16294]
Length = 452
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES ++E T Q + +P + G DI+ QAK+G GKTA F + L L V LV+C
Sbjct: 17 ESLGYKEMTPIQAQSLPSILEGRDIIAQAKTGSGKTAAFGIGLLHHLNVKKFRVQSLVLC 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGG 120
TRELA Q++KE R +++ NIK+ + GG
Sbjct: 77 PTRELADQVAKELRRLARFQHNIKILMLSGG 107
>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
gi|414596566|ref|ZP_11446140.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
E16]
gi|421876447|ref|ZP_16308004.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C10]
gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
gi|372557740|emb|CCF24124.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C10]
gi|390482587|emb|CCF28201.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
E16]
Length = 522
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95
E T Q + IP + G D++ QA++G GKTA F L L+ ++ ++ N+ L++ TRELA
Sbjct: 23 EATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILEHIDLSNKNIQALIVSPTRELA 82
Query: 96 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI-VGL-------VNYET-- 145
Q ++E ++ + ++ V V FGG I++ + LK+H PQI VG +N +T
Sbjct: 83 IQTAEELKKLGRD-KHVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVK 140
Query: 146 --NLSGVVVNVMD-VRSGGWWLDLEALILSKCA 175
N+ +V++ D + + G+ D+E++I + A
Sbjct: 141 IDNVKTLVLDEADEMLNMGFLDDIESIIKNTPA 173
>gi|422415356|ref|ZP_16492313.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
Length = 516
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP + G D++ QA++G GKTA F L + +++ ++NV L++ TRE
Sbjct: 22 FEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQALIIAPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S+E + S Y +++V +GG I + LK NPQIV
Sbjct: 82 LAIQVSEELYKLS-YDKHVRVLAVYGGSDISRQIRSLK-KNPQIV 124
>gi|432112368|gb|ELK35164.1| ATP-dependent RNA helicase DDX39A [Myotis davidii]
Length = 161
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 39/45 (86%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET 78
F + QHECIPQA+LGMD+LCQA+SGMGKTAVFVLATLQQ+E
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAQSGMGKTAVFVLATLQQIEP 108
>gi|429760884|ref|ZP_19293342.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
gi|429176588|gb|EKY17963.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
Length = 523
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L L++++ ++ +V V+++ TRE
Sbjct: 23 FEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGSNRHVQVVILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + ++Y ++I +GG I + LK NPQI+
Sbjct: 83 LAIQVAEELNKMAQY-TDITALPIYGGQDINRQFRALK-KNPQII 125
>gi|325261674|ref|ZP_08128412.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
gi|324033128|gb|EGB94405.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
Length = 527
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP G DI+ QA++G GKTA F + L+++E + + +V+C TRE
Sbjct: 24 FEEASPIQAKAIPVMKSGKDIIGQAQTGTGKTAAFGIPLLEKIEPKNKKLQAVVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E +KYM IKV +GG I LK+ I+G
Sbjct: 84 LAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVTQIRSLKSGTQLIIG 129
>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 510
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 13/149 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T V +V+ TRE
Sbjct: 3 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIAPTRE 62
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VNYET- 145
LA Q+ +E + K+ +++ +GG I + LK H IVG +N +T
Sbjct: 63 LAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTL 121
Query: 146 ---NLSGVVVNVMD-VRSGGWWLDLEALI 170
N+ VV++ D + + G+ D+EA++
Sbjct: 122 RLQNVETVVLDEADEMLNMGFIEDIEAIL 150
>gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7]
gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna
binding domain protein [Pseudomonas aeruginosa PA7]
Length = 458
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE T Q + +P + G D++ QAK+G GKTA F L L L LV+C TRE
Sbjct: 24 YREMTPIQAQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLAPLNPRYFGCQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE R ++ NIKV GG+P + PQ+ L + + G
Sbjct: 84 LADQVAKEIRRLARAADNIKVLTLCGGVP----------YGPQVASLEHGAHVVVGTPGR 133
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+ + +R G LD L L+L +
Sbjct: 134 IQEHLRKGTLVLDGLNTLVLDEA 156
>gi|421879169|ref|ZP_16310642.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C11]
gi|390446968|emb|CCF26762.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C11]
Length = 522
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95
E T Q + IP + G D++ QA++G GKTA F L L+ ++ ++ N+ L++ TRELA
Sbjct: 23 EATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILEHIDLSNKNIQALIVSPTRELA 82
Query: 96 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI-VGL-------VNYET-- 145
Q ++E ++ + ++ V V FGG I++ + LK+H PQI VG +N +T
Sbjct: 83 IQTAEELKKLGRD-KHVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVK 140
Query: 146 --NLSGVVVNVMD-VRSGGWWLDLEALILSKCA 175
N+ +V++ D + + G+ D+E++I + A
Sbjct: 141 IDNVKTLVLDEADEMLNMGFLDDIESIIKNTPA 173
>gi|417885327|ref|ZP_12529482.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris F0423]
gi|341595982|gb|EGS38619.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris F0423]
Length = 498
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 15/155 (9%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q + IP + G D++ QA++G GKTA F L ++ ++T + N+ L++ TRE
Sbjct: 21 YEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHVDTDNPNIQALIISPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI-VGL-------VNYET 145
LA Q +E R K ++V V +GG I++ + LK H+PQI VG +N T
Sbjct: 81 LAIQTQEELYRLGK-DKRVRVQVVYGGADIRRQIKSLK-HHPQILVGTPGRLRDHINRHT 138
Query: 146 ----NLSGVVVNVMD-VRSGGWWLDLEALILSKCA 175
++ +V++ D + + G+ D+EA+I A
Sbjct: 139 VKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPA 173
>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
Length = 523
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G D++ QA++G GKTA F L L++++ ++ +V V+++ TRE
Sbjct: 23 FEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGSNRHVQVVILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + ++Y ++I +GG I + LK NPQI+
Sbjct: 83 LAIQVAEELNKMAQY-TDITALPIYGGQDINRQFRALK-KNPQII 125
>gi|422412306|ref|ZP_16489265.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
S4-378]
gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
S4-378]
Length = 518
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP + G D++ QA++G GKTA F L + +++ ++NV L++ TRE
Sbjct: 24 FEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQALIIAPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S+E + S Y +++V +GG I + LK NPQIV
Sbjct: 84 LAIQVSEELYKLS-YDKHVRVLAVYGGSDISRQIRSLK-KNPQIV 126
>gi|188590818|ref|YP_001795418.1| ATP-dependent RNA helicase dbpa [Cupriavidus taiwanensis LMG 19424]
gi|170937712|emb|CAP62696.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Cupriavidus
taiwanensis LMG 19424]
Length = 469
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 11/136 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D++ QAK+G GKTA F LA L +L+ +V +V+C TRE
Sbjct: 32 YDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHRLDPRRFDVQAMVLCPTRE 91
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+++E R ++ N+KV GG P++ PQ+ L++ + G
Sbjct: 92 LADQVTQEIRRLARAEENVKVLTLCGGSPMR----------PQVDSLIHGAHIVVGTPGR 141
Query: 154 VMDVRSGGWWLDLEAL 169
++D G LDL A+
Sbjct: 142 ILDHIDRG-SLDLAAI 156
>gi|407689364|ref|YP_006804537.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292744|gb|AFT97056.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 459
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+SQ + + Q + +P+A+ G D++ QA++G GKT FV+ LQ +E D +++C
Sbjct: 20 DSQGIYQLSPIQVQSLPEALQGKDVIGQAQTGSGKTLCFVIPALQYVEVNDFTTQAIILC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++++ +K + NIKV GG P+ + LK H+P I+
Sbjct: 80 PTRELADQVAQQCRSAAKNIGNIKVTTLCGGQPMGPQIQSLK-HSPHII 127
>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
Length = 569
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP A+ G D++ QA++G GKTA F L LQ+++ + +V+ TRE
Sbjct: 24 FEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLPLLQKVDPKVKKLQAIVLLPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E RF+K+M +KV +GG I K LK IVG
Sbjct: 84 LAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVKQIRSLKDGTQVIVG 129
>gi|113866090|ref|YP_724579.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha H16]
gi|113524866|emb|CAJ91211.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 469
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D++ QAK+G GKTA F LA L +L+ +V +V+C TRE
Sbjct: 32 YDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHRLDPRRFDVQAMVLCPTRE 91
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ + L H IV
Sbjct: 92 LADQVTQEIRRLARAEENIKVLTLCGGSPMRPQVDSL-IHGAHIV 135
>gi|432861152|ref|ZP_20086236.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE146]
gi|431407161|gb|ELG90380.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE146]
Length = 457
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFSMQRDSLQ-HAPHII 126
>gi|423119970|ref|ZP_17107654.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5246]
gi|376397332|gb|EHT09966.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5246]
Length = 457
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ T LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHVDATLFQTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ NIK+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNIKILTLCGGQPFGAQRDSLQ-HAPHII 126
>gi|339324212|ref|YP_004683905.1| ATP-independent RNA helicase DbpA [Cupriavidus necator N-1]
gi|338164369|gb|AEI75424.1| ATP-independent RNA helicase DbpA [Cupriavidus necator N-1]
Length = 469
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D++ QAK+G GKTA F LA L +L+ +V +V+C TRE
Sbjct: 32 YDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHRLDPRRFDVQAMVLCPTRE 91
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ + L H IV
Sbjct: 92 LADQVTQEIRRLARAEENIKVLTLCGGSPMRPQVDSL-IHGAHIV 135
>gi|188533798|ref|YP_001907595.1| ATP-dependent RNA helicase DbpA [Erwinia tasmaniensis Et1/99]
gi|188028840|emb|CAO96702.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
Length = 459
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L + +++ + LV+C TRELA Q
Sbjct: 27 TPVQAASLPAILEGRDVRAQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++KE R +++ +NIK+ GG P+ + L H P IV
Sbjct: 87 VTKELRRLARFTANIKILTLCGGQPVGAQRDSL-LHAPHIV 126
>gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA [Herminiimonas arsenicoxydans]
Length = 506
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE TS Q + +P + D++ QAK+G GKTA F + LQ+L T + LV+C TRE
Sbjct: 66 YREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQKLNPTWFAIQGLVICPTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S E R +++ NIK+ GG P++ L+ H IV
Sbjct: 126 LADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLE-HGAHIV 169
>gi|424780375|ref|ZP_18207249.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
gi|422843078|gb|EKU27524.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
Length = 494
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q + IP + G D++ QA++G GKTA F L T+Q ++ LV+
Sbjct: 17 ESVGFEEATPIQEQTIPLVLAGKDVIGQAQTGTGKTAAFGLPTIQNIDAKKEETQALVIA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q +E R SK +KV +GG I + LK NPQIV
Sbjct: 77 PTRELAIQTQEELYRLSKE-RRLKVQAVYGGADINRQIRILK-KNPQIV 123
>gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus]
Length = 379
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + ++ Q + I + G D++ QA+SG GKTA + ++ LQQ++T++SN+ L++ TRE
Sbjct: 26 FEKPSTIQQKAIFPCISGKDVIVQAQSGTGKTATYAISVLQQIDTSNSNIQALILTPTRE 85
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
LA Q + + Y+ N K V GG I++ +E LK
Sbjct: 86 LALQAQRVLQTIGNYLYNFKCQVCIGGTSIKESQETLK 123
>gi|332305039|ref|YP_004432890.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332172368|gb|AEE21622.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
Length = 459
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S F + T Q + +P + G D++ +AK+G GKTA F LA L L+ V LVMC
Sbjct: 19 QSMGFSQMTDIQADTLPAILSGRDVVAKAKTGSGKTAAFGLALLHNLDVKRFRVQALVMC 78
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q++ E R + + NIKV GG P+ PQI L + + G
Sbjct: 79 PTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPM----------GPQIGSLEHGAHIIVG 128
Query: 150 VVVNVMD 156
+MD
Sbjct: 129 TPGRIMD 135
>gi|423012805|ref|ZP_17003528.1| ATP-dependent RNA helicase DbpA [Achromobacter xylosoxidans AXX-A]
gi|338784243|gb|EGP48582.1| ATP-dependent RNA helicase DbpA [Achromobacter xylosoxidans AXX-A]
Length = 462
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S F T Q + +P + G D++ QAK+G GKTA F L LQ+L+ L++C
Sbjct: 20 QSLGFEHMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQKLDPARLAPQALLLC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LV 141
TRELA Q+++E R ++ ++N+K+ GG + E L +VG L
Sbjct: 80 PTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAESLARGTHIVVGTPGRIQDHLA 139
Query: 142 NYETNLSGVVVNVMD 156
+LSG+ V+D
Sbjct: 140 RGSLDLSGLTTLVLD 154
>gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
Length = 515
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q E IP + G+DI+ QA++G GKTA F L + L+ D ++ VL++ TRE
Sbjct: 34 FSEPSPIQKEAIPLILDGLDIIAQAQTGTGKTAAFGLPLINNLK-NDGSIEVLIVTPTRE 92
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S E + KY + +K FGG PI++ E L+ PQ++
Sbjct: 93 LAMQVSDEIFKLGKY-NRVKTVSLFGGQPIRRQIELLE-KKPQVI 135
>gi|295675110|ref|YP_003603634.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295434953|gb|ADG14123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 467
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P A+ G D++ QAK+G GKTA F LA L +L+ + +V+C TRE
Sbjct: 29 YVEMTPIQAASLPIALGGHDLIAQAKTGSGKTAAFSLALLARLDARKFDTQAMVLCPTRE 88
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E R ++ NIKV GG P++ L+ H +V
Sbjct: 89 LADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLE-HGAHVV 132
>gi|417644460|ref|ZP_12294450.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus warneri
VCU121]
gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU121]
Length = 509
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F+E T Q + IP A+ G DIL QA++G GKT F + ++++ + V L++
Sbjct: 18 ESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIEKV-VGEQGVQSLILA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q++++ + FSK N++V FGG+PI++ + LK PQIV G
Sbjct: 77 PTRELAMQVAEQLKVFSKG-QNVQVVTVFGGMPIERQIKALK-KGPQIV------VGTPG 128
Query: 150 VVVNVMDVRSGGWWLDLEALILSKC 174
V++ ++ R+ D+ LIL +
Sbjct: 129 RVIDHLNRRTLKTN-DIHTLILDEA 152
>gi|445059172|ref|YP_007384576.1| DEAD-box ATP dependent DNA helicase [Staphylococcus warneri SG1]
gi|443425229|gb|AGC90132.1| DEAD-box ATP dependent DNA helicase [Staphylococcus warneri SG1]
Length = 509
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F+E T Q + IP A+ G DIL QA++G GKT F + ++++ + V L++
Sbjct: 18 ESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIEKV-VGEQGVQSLILA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q++++ + FSK N++V FGG+PI++ + LK PQIV G
Sbjct: 77 PTRELAMQVAEQLKVFSKG-QNVQVVTVFGGMPIERQIKALK-KGPQIV------VGTPG 128
Query: 150 VVVNVMDVRSGGWWLDLEALILSKC 174
V++ ++ R+ D+ LIL +
Sbjct: 129 RVIDHLNRRTLKTN-DIHTLILDEA 152
>gi|227328700|ref|ZP_03832724.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 434
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ +AK+G GKTA F + L ++ +D LV+C TRELA Q
Sbjct: 2 TPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+SKE R +++ NIK+ GG P+ + + L H P IV
Sbjct: 62 VSKELRRLARFAQNIKILTLCGGQPMGQQLDSL-VHAPHIV 101
>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus capitis SK14]
gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
caprae C87]
gi|417906606|ref|ZP_12550387.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus capitis
VCU116]
gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus capitis SK14]
gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
caprae C87]
gi|341597608|gb|EGS40154.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus capitis
VCU116]
Length = 511
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F+E T Q + IP A+ G DIL QA++G GKT F + ++++ V L++
Sbjct: 18 ESMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKV-VGQQGVQSLILA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++++ FSK N++V FGG+PI++ + LK PQIV
Sbjct: 77 PTRELAMQVAEQLREFSKG-QNVQVVTVFGGMPIERQIKALK-RGPQIV 123
>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
Length = 509
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F+E T Q + IP A+ G DIL QA++G GKT F + ++++ + V L++
Sbjct: 18 ESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIEKV-VGEQGVQSLILA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q++++ + FSK N++V FGG+PI++ + LK PQIV G
Sbjct: 77 PTRELAMQVAEQLKVFSKG-QNVQVVTVFGGMPIERQIKALK-KGPQIV------VGTPG 128
Query: 150 VVVNVMDVRSGGWWLDLEALILSKC 174
V++ ++ R+ D+ LIL +
Sbjct: 129 RVIDHLNRRTLKTN-DIHTLILDEA 152
>gi|333983131|ref|YP_004512341.1| DEAD/DEAH box helicase [Methylomonas methanica MC09]
gi|333807172|gb|AEF99841.1| DEAD/DEAH box helicase domain protein [Methylomonas methanica MC09]
Length = 462
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q E +P + G D++ QAK+G GKTA F + + +L+ V LV+C TRELA Q
Sbjct: 28 TPIQAESLPHILEGKDVIAQAKTGSGKTAAFGIGLISRLDVGHFKVQALVLCPTRELADQ 87
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+SKE + ++++ NIKV GG+P + L IVG
Sbjct: 88 VSKEIRQLARFIPNIKVLSLCGGVPFAPQRDSLLHGAHVIVG 129
>gi|422357107|ref|ZP_16437778.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
gi|315289076|gb|EFU48474.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
Length = 432
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|417084221|ref|ZP_11952005.1| ATP-dependent RNA helicase DbpA [Escherichia coli cloneA_i1]
gi|355352269|gb|EHG01453.1| ATP-dependent RNA helicase DbpA [Escherichia coli cloneA_i1]
Length = 457
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|366159225|ref|ZP_09459087.1| ATP-dependent RNA helicase DbpA [Escherichia sp. TW09308]
gi|432372383|ref|ZP_19615428.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE11]
gi|430896876|gb|ELC19103.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE11]
Length = 457
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFSIQRDSLQ-HAPHII 126
>gi|393759658|ref|ZP_10348471.1| ATP-dependent RNA helicase DbpA [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162219|gb|EJC62280.1| ATP-dependent RNA helicase DbpA [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 466
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F T+ Q + +P + G D++ QAK+G GKTA F L LQ L + LV+C TRE
Sbjct: 28 FENMTAIQEQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLQTLNPSKLTPQALVICPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q++ E R ++ + N+++ GG+P + E L+ +VG
Sbjct: 88 LADQVTTELRRLARQIPNVRMLTLCGGVPSRPQTEALRNGAHVVVG 133
>gi|445050499|ref|ZP_21365609.1| helicase conserved C-terminal domain protein, partial [Escherichia
coli 95.0083]
gi|444669668|gb|ELW41641.1| helicase conserved C-terminal domain protein, partial [Escherichia
coli 95.0083]
Length = 340
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|432732144|ref|ZP_19966979.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE45]
gi|432759223|ref|ZP_19993722.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE46]
gi|431277206|gb|ELF68221.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE45]
gi|431310541|gb|ELF98733.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE46]
Length = 457
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDVSLFQTQGLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|91210637|ref|YP_540623.1| ATP-dependent RNA helicase DbpA [Escherichia coli UTI89]
gi|117623595|ref|YP_852508.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O1]
gi|218558330|ref|YP_002391243.1| ATP-dependent RNA helicase DbpA [Escherichia coli S88]
gi|237705373|ref|ZP_04535854.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
gi|386599245|ref|YP_006100751.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
gi|386604599|ref|YP_006110899.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
gi|419700241|ref|ZP_14227849.1| ATP-dependent RNA helicase DbpA [Escherichia coli SCI-07]
gi|419945827|ref|ZP_14462257.1| ATP-dependent RNA helicase DbpA [Escherichia coli HM605]
gi|422752237|ref|ZP_16806140.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|422754774|ref|ZP_16808599.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|422838632|ref|ZP_16886605.1| ATP-independent RNA helicase dbpA [Escherichia coli H397]
gi|432357787|ref|ZP_19601017.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE4]
gi|432362409|ref|ZP_19605582.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE5]
gi|432573467|ref|ZP_19809952.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE55]
gi|432587708|ref|ZP_19824065.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE58]
gi|432597434|ref|ZP_19833711.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE62]
gi|432778321|ref|ZP_20012566.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE59]
gi|432787265|ref|ZP_20021400.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE65]
gi|432820690|ref|ZP_20054393.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE118]
gi|432826846|ref|ZP_20060500.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE123]
gi|433004896|ref|ZP_20193329.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE227]
gi|433007397|ref|ZP_20195817.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE229]
gi|433153492|ref|ZP_20338453.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE176]
gi|433163189|ref|ZP_20347943.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE179]
gi|433168247|ref|ZP_20352901.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE180]
gi|91072211|gb|ABE07092.1| ATP-independent RNA helicase DbpA [Escherichia coli UTI89]
gi|115512719|gb|ABJ00794.1| ATP-independent RNA helicase DbpA [Escherichia coli APEC O1]
gi|218365099|emb|CAR02806.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
S88]
gi|226900130|gb|EEH86389.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
gi|294490917|gb|ADE89673.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
gi|307627083|gb|ADN71387.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
gi|323949054|gb|EGB44946.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|323956904|gb|EGB52636.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|371613198|gb|EHO01698.1| ATP-independent RNA helicase dbpA [Escherichia coli H397]
gi|380348599|gb|EIA36879.1| ATP-dependent RNA helicase DbpA [Escherichia coli SCI-07]
gi|388414500|gb|EIL74456.1| ATP-dependent RNA helicase DbpA [Escherichia coli HM605]
gi|430878421|gb|ELC01849.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE4]
gi|430887701|gb|ELC10442.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE5]
gi|431109467|gb|ELE13425.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE55]
gi|431121434|gb|ELE24329.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE58]
gi|431131558|gb|ELE33578.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE62]
gi|431327713|gb|ELG15034.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE59]
gi|431338900|gb|ELG25971.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE65]
gi|431369830|gb|ELG56051.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE118]
gi|431373970|gb|ELG59573.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE123]
gi|431515884|gb|ELH93699.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE227]
gi|431524629|gb|ELI01570.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE229]
gi|431676475|gb|ELJ42594.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE176]
gi|431690390|gb|ELJ55873.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE179]
gi|431691073|gb|ELJ56535.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE180]
Length = 457
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|432754189|ref|ZP_19988742.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE22]
gi|431304187|gb|ELF92721.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE22]
Length = 457
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|92115299|ref|YP_575227.1| ATP-dependent RNA helicase DbpA [Chromohalobacter salexigens DSM
3043]
gi|91798389|gb|ABE60528.1| ATP-dependent RNA helicase DbpA [Chromohalobacter salexigens DSM
3043]
Length = 465
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q E +P + G D++ Q ++G GKTA F L L +LE V LV+C TRE
Sbjct: 28 YHAMTPIQAESLPAILAGRDVIGQGQTGSGKTAAFGLGVLAKLEVKAFRVQALVLCPTRE 87
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++ E R ++ + N+KV GG P++ + L+ H +V
Sbjct: 88 LADQVAGEVRRLARGLGNVKVLTLCGGAPLKPQRDSLE-HGAHVV 131
>gi|422382611|ref|ZP_16462766.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
gi|324006198|gb|EGB75417.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
Length = 432
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDVSLFQTQGLVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|417707397|ref|ZP_12356444.1| ATP-independent RNA helicase dbpA [Shigella flexneri VA-6]
gi|420330886|ref|ZP_14832565.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-1770]
gi|333004456|gb|EGK23986.1| ATP-independent RNA helicase dbpA [Shigella flexneri VA-6]
gi|391255154|gb|EIQ14305.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-1770]
Length = 455
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTLALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille]
gi|151281157|gb|ABR89567.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 478
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S +RE T Q + +P + D++ QAK+G GKTA F + LQ+L T V LV+C
Sbjct: 35 DSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGLLQKLNPTWFAVQALVIC 94
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+S E R ++ NIKV GG P++ L+ +VG ++
Sbjct: 95 PTRELADQVSNELRRLARATENIKVLTLCGGAPMRPQIASLEHGAHIVVGTPGRIRDHIS 154
Query: 143 YET-NLSGVVVNVMD 156
ET NLS V V+D
Sbjct: 155 RETINLSKVQTLVLD 169
>gi|432792592|ref|ZP_20026679.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE78]
gi|432798552|ref|ZP_20032576.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE79]
gi|431340525|gb|ELG27553.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE78]
gi|431344703|gb|ELG31641.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE79]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|417867141|ref|ZP_12512179.1| hypothetical protein C22711_4069 [Escherichia coli O104:H4 str.
C227-11]
gi|341920430|gb|EGT70037.1| hypothetical protein C22711_4069 [Escherichia coli O104:H4 str.
C227-11]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|387829377|ref|YP_003349314.1| ATP-dependent RNA helicase [Escherichia coli SE15]
gi|432499820|ref|ZP_19741583.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE216]
gi|432694213|ref|ZP_19929422.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE162]
gi|432918678|ref|ZP_20123019.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE173]
gi|432926453|ref|ZP_20128234.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE175]
gi|432980867|ref|ZP_20169645.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE211]
gi|433096235|ref|ZP_20282442.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE139]
gi|433105499|ref|ZP_20291510.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE148]
gi|281178534|dbj|BAI54864.1| ATP-dependent RNA helicase [Escherichia coli SE15]
gi|431030518|gb|ELD43532.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE216]
gi|431235571|gb|ELF30822.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE162]
gi|431445810|gb|ELH26733.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE173]
gi|431447088|gb|ELH27831.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE175]
gi|431493762|gb|ELH73356.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE211]
gi|431618208|gb|ELI87186.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE139]
gi|431631673|gb|ELI99979.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE148]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|121486020|gb|ABM54889.1| ATP-independent RNA helicase [Escherichia coli]
Length = 437
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 7 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 66
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 67 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 106
>gi|433047478|ref|ZP_20234878.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE120]
gi|431569516|gb|ELI42459.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE120]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|432580023|ref|ZP_19816452.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE56]
gi|431106879|gb|ELE11068.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE56]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|432542778|ref|ZP_19779629.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE236]
gi|432548253|ref|ZP_19785037.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE237]
gi|432621527|ref|ZP_19857565.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE76]
gi|432814966|ref|ZP_20048755.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE115]
gi|431075533|gb|ELD83053.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE236]
gi|431083022|gb|ELD89333.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE237]
gi|431160719|gb|ELE61221.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE76]
gi|431365912|gb|ELG52416.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE115]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|418043533|ref|ZP_12681691.1| DEAD/DEAH box helicase [Escherichia coli W26]
gi|383473543|gb|EID65564.1| DEAD/DEAH box helicase [Escherichia coli W26]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|74312285|ref|YP_310704.1| ATP-dependent RNA helicase DbpA [Shigella sonnei Ss046]
gi|383178646|ref|YP_005456651.1| ATP-dependent RNA helicase DbpA [Shigella sonnei 53G]
gi|414576197|ref|ZP_11433385.1| ATP-independent RNA helicase dbpA [Shigella sonnei 3233-85]
gi|415845196|ref|ZP_11524829.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
gi|418265833|ref|ZP_12885542.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella sonnei
str. Moseley]
gi|420358750|ref|ZP_14859729.1| ATP-independent RNA helicase dbpA [Shigella sonnei 3226-85]
gi|73855762|gb|AAZ88469.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
gi|323168225|gb|EFZ53911.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
gi|391283343|gb|EIQ41963.1| ATP-independent RNA helicase dbpA [Shigella sonnei 3226-85]
gi|391285749|gb|EIQ44321.1| ATP-independent RNA helicase dbpA [Shigella sonnei 3233-85]
gi|397900318|gb|EJL16679.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella sonnei
str. Moseley]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|420106246|ref|ZP_14616665.1| ATP-dependent RNA helicase DbpA, partial [Escherichia coli O111:H11
str. CVM9553]
gi|394416811|gb|EJE90581.1| ATP-dependent RNA helicase DbpA, partial [Escherichia coli O111:H11
str. CVM9553]
Length = 390
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|419364968|ref|ZP_13906138.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13E]
gi|378215749|gb|EHX76043.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13E]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|422350619|ref|ZP_16431499.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
gi|324021225|gb|EGB90444.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
gi|432770254|ref|ZP_20004602.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE50]
gi|432961208|ref|ZP_20151093.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE202]
gi|433062584|ref|ZP_20249532.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE125]
gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
gi|431316848|gb|ELG04647.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE50]
gi|431476739|gb|ELH56527.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE202]
gi|431585050|gb|ELI57010.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE125]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|432749798|ref|ZP_19984409.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE29]
gi|431298350|gb|ELF87983.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE29]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|421873418|ref|ZP_16305031.1| DEAD/DEAH box helicase family protein [Brevibacillus laterosporus
GI-9]
gi|372457480|emb|CCF14580.1| DEAD/DEAH box helicase family protein [Brevibacillus laterosporus
GI-9]
Length = 486
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
++E T+ Q E IP + G D++ QA++G GKTA FVL LQ+L+ ++ L++ TRE
Sbjct: 22 YKEPTAIQEEAIPLILEGKDVIGQAQTGTGKTAAFVLPILQKLQEGKKDIQTLILTPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
L+ QI+ E E+ K++ N+ V GG I++ LK
Sbjct: 82 LSIQIASEIEKLGKHL-NVSVLSLHGGTDIERQMNKLK 118
>gi|344940975|ref|ZP_08780263.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344262167|gb|EGW22438.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 462
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES + T Q E +P + G D++ QAK+G GKTA F + L +L+ V +V+C
Sbjct: 20 ESLGYTHLTPIQAESLPHILEGRDVIAQAKTGSGKTAAFGIGLLSKLDLNSFRVQAMVVC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 122
TRELA Q+ KE R +++ NIKV GG+P
Sbjct: 80 PTRELADQVCKEIRRLARFTQNIKVLTLCGGVP 112
>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
hominis subsp. hominis C80]
gi|418618997|ref|ZP_13181840.1| DEAD/DEAH box helicase [Staphylococcus hominis VCU122]
gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
hominis subsp. hominis C80]
gi|374825858|gb|EHR89777.1| DEAD/DEAH box helicase [Staphylococcus hominis VCU122]
Length = 503
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F+E T Q E IP + G DIL QA++G GKT F + ++++ S V L++ TRE
Sbjct: 22 FKEPTPIQKESIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKV-VGKSGVQALILAPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++++ FS+ NI+V FGG+PI + + LK PQIV G V++
Sbjct: 81 LAMQVAEQLREFSRG-QNIQVVTVFGGMPIDRQIKALK-RGPQIV------VGTPGRVID 132
Query: 154 VMDVRSGGWWLDLEALILSKC 174
++ R+ D+ LIL +
Sbjct: 133 HLNRRTLKTN-DIHTLILDEA 152
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q E IP + G D++ QA++G GKTA F L L++++ ++ NV LV+ TRE
Sbjct: 21 YEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPILEKIDKSNENVQALVVSPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q +E + + V V +GG I++ + LK H PQ+V
Sbjct: 81 LAIQTQEEIYKLGR-TERANVQVVYGGADIRRQIKSLKNH-PQVV 123
>gi|46581710|ref|YP_012518.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. Hildenborough]
gi|387154902|ref|YP_005703838.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris RCH1]
gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio
vulgaris str. Hildenborough]
gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
Length = 532
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 62/110 (56%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E + Q IP+ + G D++ QA++G GKTA F L LQ+++ D +V LV+C
Sbjct: 21 EELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQRIDAADRSVQALVLC 80
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
TRELA Q++ +K++ +++ +GG PI+ L+ +VG
Sbjct: 81 PTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRRGAQVVVG 130
>gi|425119493|ref|ZP_18521206.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0569]
gi|408571782|gb|EKK47710.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0569]
Length = 448
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 18 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 77
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 78 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 117
>gi|422010700|ref|ZP_16357651.1| ATP-dependent RNA helicase DbpA, partial [Escherichia coli O111:H11
str. CVM9455]
gi|394393680|gb|EJE70339.1| ATP-dependent RNA helicase DbpA, partial [Escherichia coli O111:H11
str. CVM9455]
Length = 421
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|424096299|ref|ZP_17831807.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1985]
gi|424102681|ref|ZP_17837614.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1990]
gi|424133776|ref|ZP_17866387.1| ATP-independent RNA helicase dbpA [Escherichia coli PA10]
gi|424140413|ref|ZP_17872472.1| ATP-independent RNA helicase dbpA [Escherichia coli PA14]
gi|424455363|ref|ZP_17906678.1| ATP-independent RNA helicase dbpA [Escherichia coli PA33]
gi|424468138|ref|ZP_17918116.1| ATP-independent RNA helicase dbpA [Escherichia coli PA41]
gi|424568814|ref|ZP_18009528.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4448]
gi|425186017|ref|ZP_18583431.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1997]
gi|425310952|ref|ZP_18700242.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1735]
gi|425316874|ref|ZP_18705773.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1736]
gi|425322984|ref|ZP_18711462.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1737]
gi|425347577|ref|ZP_18734200.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1849]
gi|428946542|ref|ZP_19018989.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.1467]
gi|390667231|gb|EIN44254.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1985]
gi|390667538|gb|EIN44553.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1990]
gi|390703920|gb|EIN77911.1| ATP-independent RNA helicase dbpA [Escherichia coli PA10]
gi|390705466|gb|EIN79191.1| ATP-independent RNA helicase dbpA [Escherichia coli PA14]
gi|390749474|gb|EIO19741.1| ATP-independent RNA helicase dbpA [Escherichia coli PA33]
gi|390771259|gb|EIO39962.1| ATP-independent RNA helicase dbpA [Escherichia coli PA41]
gi|390903424|gb|EIP62476.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4448]
gi|408109183|gb|EKH41112.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1997]
gi|408232025|gb|EKI55284.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1735]
gi|408243541|gb|EKI66053.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1736]
gi|408247009|gb|EKI69243.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1737]
gi|408269778|gb|EKI90017.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1849]
gi|427212068|gb|EKV81725.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.1467]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|419899069|ref|ZP_14418596.1| ATP-dependent RNA helicase DbpA, partial [Escherichia coli O26:H11
str. CVM9942]
gi|388380578|gb|EIL43177.1| ATP-dependent RNA helicase DbpA, partial [Escherichia coli O26:H11
str. CVM9942]
Length = 213
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|408674498|ref|YP_006874246.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387856122|gb|AFK04219.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 576
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%)
Query: 27 RIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 86
R E F T Q + IP + G D++ QA++G GKTA F + ++ ++ D N VL
Sbjct: 17 RAVEEMGFEFSTPIQSQGIPAVLRGGDVIGQAQTGTGKTAAFGIPAIEAVDVEDKNTQVL 76
Query: 87 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 120
VMC TRELA Q+ ++ ++ +KY + V +GG
Sbjct: 77 VMCPTRELALQVKEQIQKLAKYKKGLHVAAIYGG 110
>gi|419354661|ref|ZP_13895932.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13C]
gi|419359882|ref|ZP_13901106.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13D]
gi|378203923|gb|EHX64340.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13C]
gi|378206275|gb|EHX66681.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13D]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|339640657|ref|ZP_08662101.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339453926|gb|EGP66541.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 517
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E + Q + IP A+ G D++ QA++G GKTA F TL++++TT+ V L++
Sbjct: 17 EKAGFEEASPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGFPTLEKIDTTNPTVQALIIA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
TRELA Q +E RF + +KV +GG I+K + LK+ +VG
Sbjct: 77 PTRELAVQCQEELFRFGRS-KGVKVRSVYGGSSIEKQIKALKSGAHIVVG 125
>gi|417827570|ref|ZP_12474138.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri J1713]
gi|335575951|gb|EGM62213.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri J1713]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|415812430|ref|ZP_11504567.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
gi|323172286|gb|EFZ57923.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris DP4]
gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
Length = 532
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 62/110 (56%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E + Q IP+ + G D++ QA++G GKTA F L LQ+++ D +V LV+C
Sbjct: 21 EELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQRIDAADRSVQALVLC 80
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
TRELA Q++ +K++ +++ +GG PI+ L+ +VG
Sbjct: 81 PTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRRGAQVVVG 130
>gi|452881580|ref|ZP_21958306.1| ATP-dependent RNA helicase DbpA, partial [Pseudomonas aeruginosa
VRFPA01]
gi|452182240|gb|EME09258.1| ATP-dependent RNA helicase DbpA, partial [Pseudomonas aeruginosa
VRFPA01]
Length = 302
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE T Q + +P + G D++ QAK+G GKTA F L L L LV+C TRE
Sbjct: 24 YREMTPIQAQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLAPLNPRYFGCQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE R ++ NIKV GG+P + PQ+ L + + G
Sbjct: 84 LADQVAKEIRRLARAADNIKVLTLCGGVP----------YGPQVASLEHGAHVVVGTPGR 133
Query: 154 VMD-VRSGGWWLD-LEALILSK 173
+ + +R G LD L L+L +
Sbjct: 134 IQEHLRKGTLVLDGLNTLVLDE 155
>gi|82544201|ref|YP_408148.1| ATP-dependent RNA helicase DbpA [Shigella boydii Sb227]
gi|416271297|ref|ZP_11642916.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
gi|417126242|ref|ZP_11973967.1| ATP-independent RNA helicase DbpA [Escherichia coli 97.0246]
gi|417682235|ref|ZP_12331593.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
gi|420352287|ref|ZP_14853437.1| ATP-independent RNA helicase dbpA [Shigella boydii 4444-74]
gi|421682099|ref|ZP_16121918.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri 1485-80]
gi|81245612|gb|ABB66320.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
gi|320174309|gb|EFW49464.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
gi|332094952|gb|EGI99992.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
gi|386145286|gb|EIG91746.1| ATP-independent RNA helicase DbpA [Escherichia coli 97.0246]
gi|391283805|gb|EIQ42416.1| ATP-independent RNA helicase dbpA [Shigella boydii 4444-74]
gi|404341058|gb|EJZ67471.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri 1485-80]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|16129304|ref|NP_415859.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
str. K-12 substr. MG1655]
gi|157160855|ref|YP_001458173.1| ATP-dependent RNA helicase DbpA [Escherichia coli HS]
gi|170020291|ref|YP_001725245.1| ATP-dependent RNA helicase DbpA [Escherichia coli ATCC 8739]
gi|170081022|ref|YP_001730342.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. K-12 substr.
DH10B]
gi|188494462|ref|ZP_03001732.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
gi|194436972|ref|ZP_03069071.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
gi|238900578|ref|YP_002926374.1| ATP-dependent RNA helicase DbpA [Escherichia coli BW2952]
gi|251784846|ref|YP_002999150.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BL21(DE3)]
gi|253773655|ref|YP_003036486.1| ATP-dependent RNA helicase DbpA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161422|ref|YP_003044530.1| ATP-dependent RNA helicase DbpA [Escherichia coli B str. REL606]
gi|254288229|ref|YP_003053977.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BL21(DE3)]
gi|300927858|ref|ZP_07143420.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
gi|300948429|ref|ZP_07162531.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
gi|300954597|ref|ZP_07167042.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
gi|301022682|ref|ZP_07186535.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
gi|301647156|ref|ZP_07246977.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
gi|312971541|ref|ZP_07785716.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
gi|331641910|ref|ZP_08343045.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
gi|386280462|ref|ZP_10058128.1| ATP-independent RNA helicase dbpA [Escherichia sp. 4_1_40B]
gi|386595833|ref|YP_006092233.1| DEAD/DEAH box helicase [Escherichia coli DH1]
gi|386613873|ref|YP_006133539.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
gi|387611908|ref|YP_006115024.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
gi|387621061|ref|YP_006128688.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
gi|388477425|ref|YP_489613.1| ATP-dependent RNA helicase-specific for 23S rRNA [Escherichia coli
str. K-12 substr. W3110]
gi|404374712|ref|ZP_10979919.1| ATP-independent RNA helicase dbpA [Escherichia sp. 1_1_43]
gi|417262903|ref|ZP_12050365.1| ATP-independent RNA helicase DbpA [Escherichia coli 2.3916]
gi|417274541|ref|ZP_12061881.1| ATP-independent RNA helicase DbpA [Escherichia coli 2.4168]
gi|417278545|ref|ZP_12065860.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.2303]
gi|417289908|ref|ZP_12077191.1| ATP-independent RNA helicase DbpA [Escherichia coli B41]
gi|417612723|ref|ZP_12263186.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_EH250]
gi|417978849|ref|ZP_12619603.1| ATP-dependent RNA helicase DbpA [Escherichia coli XH001]
gi|418302584|ref|ZP_12914378.1| ATP-independent RNA helicase dbpA [Escherichia coli UMNF18]
gi|419153334|ref|ZP_13697914.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6C]
gi|419158781|ref|ZP_13703294.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6D]
gi|419163866|ref|ZP_13708328.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC6E]
gi|419174907|ref|ZP_13718756.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7B]
gi|419811453|ref|ZP_14336328.1| ATP-dependent RNA helicase DbpA [Escherichia coli O32:H37 str. P4]
gi|419940475|ref|ZP_14457210.1| ATP-dependent RNA helicase DbpA [Escherichia coli 75]
gi|421776817|ref|ZP_16213419.1| ATP-independent RNA helicase dbpA [Escherichia coli AD30]
gi|422765896|ref|ZP_16819623.1| DEAD/DEAH box helicase [Escherichia coli E1520]
gi|422770563|ref|ZP_16824254.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|422785964|ref|ZP_16838703.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|422789974|ref|ZP_16842679.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|422817329|ref|ZP_16865543.1| ATP-independent RNA helicase dbpA [Escherichia coli M919]
gi|423705156|ref|ZP_17679579.1| ATP-independent RNA helicase dbpA [Escherichia coli H730]
gi|432369417|ref|ZP_19612513.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE10]
gi|432416539|ref|ZP_19659155.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE44]
gi|432485049|ref|ZP_19726967.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE212]
gi|432563567|ref|ZP_19800168.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE51]
gi|432626921|ref|ZP_19862902.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE77]
gi|432636590|ref|ZP_19872470.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE81]
gi|432660605|ref|ZP_19896253.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE111]
gi|432670344|ref|ZP_19905880.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE119]
gi|432685155|ref|ZP_19920462.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE156]
gi|432691299|ref|ZP_19926533.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE161]
gi|432704054|ref|ZP_19939168.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE171]
gi|432736827|ref|ZP_19971594.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE42]
gi|432881274|ref|ZP_20097646.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE154]
gi|432954710|ref|ZP_20146734.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE197]
gi|433173172|ref|ZP_20357717.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE232]
gi|442593672|ref|ZP_21011605.1| ATP-dependent 23S rRNA helicase DbpA [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|442595898|ref|ZP_21013730.1| ATP-dependent 23S rRNA helicase DbpA [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|450242809|ref|ZP_21899927.1| ATP-dependent RNA helicase DbpA [Escherichia coli S17]
gi|416881|sp|P21693.2|DBPA_ECOLI RecName: Full=ATP-independent RNA helicase DbpA
gi|1742212|dbj|BAA14946.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
str. K12 substr. W3110]
gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
str. K-12 substr. MG1655]
gi|157066535|gb|ABV05790.1| ATP-independent RNA helicase DbpA [Escherichia coli HS]
gi|169755219|gb|ACA77918.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
gi|169888857|gb|ACB02564.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
str. K-12 substr. DH10B]
gi|188489661|gb|EDU64764.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
gi|194423955|gb|EDX39943.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
gi|238860048|gb|ACR62046.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BW2952]
gi|242377119|emb|CAQ31847.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BL21(DE3)]
gi|253324699|gb|ACT29301.1| DEAD/DEAH box helicase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973323|gb|ACT38994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
B str. REL606]
gi|253977536|gb|ACT43206.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BL21(DE3)]
gi|260449522|gb|ACX39944.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
gi|299881170|gb|EFI89381.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
gi|300318431|gb|EFJ68215.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
gi|300452053|gb|EFK15673.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
gi|300464143|gb|EFK27636.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
gi|301074642|gb|EFK89448.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
gi|309701644|emb|CBJ00951.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
gi|310336138|gb|EFQ01338.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
gi|315135984|dbj|BAJ43143.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
gi|323937669|gb|EGB33937.1| DEAD/DEAH box helicase [Escherichia coli E1520]
gi|323942290|gb|EGB38461.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|323962410|gb|EGB57993.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|323973547|gb|EGB68732.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|331038708|gb|EGI10928.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
gi|332343042|gb|AEE56376.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
gi|339414682|gb|AEJ56354.1| ATP-independent RNA helicase dbpA [Escherichia coli UMNF18]
gi|344191512|gb|EGV45628.1| ATP-dependent RNA helicase DbpA [Escherichia coli XH001]
gi|345363890|gb|EGW96029.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_EH250]
gi|378001180|gb|EHV64240.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6C]
gi|378010238|gb|EHV73184.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6D]
gi|378012669|gb|EHV75597.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC6E]
gi|378035786|gb|EHV98339.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7B]
gi|385155777|gb|EIF17778.1| ATP-dependent RNA helicase DbpA [Escherichia coli O32:H37 str. P4]
gi|385539137|gb|EIF85977.1| ATP-independent RNA helicase dbpA [Escherichia coli M919]
gi|385704526|gb|EIG41599.1| ATP-independent RNA helicase dbpA [Escherichia coli H730]
gi|386122422|gb|EIG71033.1| ATP-independent RNA helicase dbpA [Escherichia sp. 4_1_40B]
gi|386223587|gb|EII45948.1| ATP-independent RNA helicase DbpA [Escherichia coli 2.3916]
gi|386232969|gb|EII64954.1| ATP-independent RNA helicase DbpA [Escherichia coli 2.4168]
gi|386238798|gb|EII75733.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.2303]
gi|386255946|gb|EIJ05634.1| ATP-independent RNA helicase DbpA [Escherichia coli B41]
gi|388403037|gb|EIL63580.1| ATP-dependent RNA helicase DbpA [Escherichia coli 75]
gi|404291781|gb|EJZ48636.1| ATP-independent RNA helicase dbpA [Escherichia sp. 1_1_43]
gi|408458199|gb|EKJ81988.1| ATP-independent RNA helicase dbpA [Escherichia coli AD30]
gi|430886917|gb|ELC09745.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE10]
gi|430941159|gb|ELC61318.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE44]
gi|431017175|gb|ELD30691.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE212]
gi|431096056|gb|ELE01651.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE51]
gi|431164869|gb|ELE65260.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE77]
gi|431172795|gb|ELE72899.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE81]
gi|431201249|gb|ELE99966.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE111]
gi|431211817|gb|ELF09773.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE119]
gi|431223377|gb|ELF20629.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE156]
gi|431228121|gb|ELF25244.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE161]
gi|431244751|gb|ELF39054.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE171]
gi|431284583|gb|ELF75435.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE42]
gi|431412224|gb|ELG95309.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE154]
gi|431469162|gb|ELH49094.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE197]
gi|431694895|gb|ELJ60239.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE232]
gi|441606353|emb|CCP96885.1| ATP-dependent 23S rRNA helicase DbpA [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|441655698|emb|CCP99643.1| ATP-dependent 23S rRNA helicase DbpA [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|449322749|gb|EMD12731.1| ATP-dependent RNA helicase DbpA [Escherichia coli S17]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|401684066|ref|ZP_10815949.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
gi|400186371|gb|EJO20583.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
Length = 520
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E + Q + IP A+ G D++ QA++G GKTA F L TL+++ T +S + LV+
Sbjct: 17 EKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEESTIQALVIA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q +E RF + +KV +GG I+K + LK+ +VG G
Sbjct: 77 PTRELAVQSQEELFRFGRS-KGVKVRSVYGGSSIEKQIKALKSGAHIVVG-------TPG 128
Query: 150 VVVNVMDVRSGGWWLDLEALILSKC 174
+++++ R D+E LIL +
Sbjct: 129 RLLDLIK-RKALKLQDIETLILDEA 152
>gi|417137298|ref|ZP_11981088.1| ATP-independent RNA helicase DbpA [Escherichia coli 97.0259]
gi|417307842|ref|ZP_12094702.1| ATP-independent RNA helicase dbpA [Escherichia coli PCN033]
gi|432391618|ref|ZP_19634465.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE21]
gi|338770621|gb|EGP25381.1| ATP-independent RNA helicase dbpA [Escherichia coli PCN033]
gi|386158862|gb|EIH15195.1| ATP-independent RNA helicase DbpA [Escherichia coli 97.0259]
gi|430920529|gb|ELC41416.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE21]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|218704863|ref|YP_002412382.1| ATP-dependent RNA helicase DbpA [Escherichia coli UMN026]
gi|293404872|ref|ZP_06648864.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
gi|298380516|ref|ZP_06990115.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
gi|300900110|ref|ZP_07118304.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
gi|331672872|ref|ZP_08373658.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
gi|417586267|ref|ZP_12237040.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_C165-02]
gi|419936716|ref|ZP_14453699.1| ATP-dependent RNA helicase DbpA [Escherichia coli 576-1]
gi|432353269|ref|ZP_19596545.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE2]
gi|432401619|ref|ZP_19644372.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE26]
gi|432425786|ref|ZP_19668294.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE181]
gi|432460462|ref|ZP_19702614.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE204]
gi|432475480|ref|ZP_19717485.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE208]
gi|432489020|ref|ZP_19730902.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE213]
gi|432517419|ref|ZP_19754614.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE228]
gi|432537518|ref|ZP_19774424.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE235]
gi|432631092|ref|ZP_19867022.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE80]
gi|432640737|ref|ZP_19876574.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE83]
gi|432665724|ref|ZP_19901307.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE116]
gi|432718379|ref|ZP_19953354.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE9]
gi|432774495|ref|ZP_20008779.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE54]
gi|432839036|ref|ZP_20072524.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE140]
gi|432886190|ref|ZP_20100385.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE158]
gi|432912272|ref|ZP_20118205.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE190]
gi|433018306|ref|ZP_20206560.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE105]
gi|433052705|ref|ZP_20239920.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE122]
gi|433067657|ref|ZP_20254467.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE128]
gi|433158326|ref|ZP_20343184.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE177]
gi|433177906|ref|ZP_20362337.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE82]
gi|433202907|ref|ZP_20386695.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE95]
gi|218431960|emb|CAR12845.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
UMN026]
gi|291427080|gb|EFF00107.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
gi|298277958|gb|EFI19472.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
gi|300356389|gb|EFJ72259.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
gi|331070093|gb|EGI41462.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
gi|345339423|gb|EGW71849.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_C165-02]
gi|388400405|gb|EIL61146.1| ATP-dependent RNA helicase DbpA [Escherichia coli 576-1]
gi|430876786|gb|ELC00293.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE2]
gi|430926449|gb|ELC47036.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE26]
gi|430957317|gb|ELC75971.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE181]
gi|430990004|gb|ELD06450.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE204]
gi|431007480|gb|ELD22292.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE208]
gi|431022128|gb|ELD35398.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE213]
gi|431052728|gb|ELD62376.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE228]
gi|431071078|gb|ELD79234.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE235]
gi|431171471|gb|ELE71646.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE80]
gi|431183002|gb|ELE82818.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE83]
gi|431202540|gb|ELF01226.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE116]
gi|431264849|gb|ELF56552.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE9]
gi|431319840|gb|ELG07510.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE54]
gi|431390455|gb|ELG74158.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE140]
gi|431417999|gb|ELH00427.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE158]
gi|431442332|gb|ELH23437.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE190]
gi|431534936|gb|ELI11325.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE105]
gi|431573580|gb|ELI46378.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE122]
gi|431587647|gb|ELI59002.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE128]
gi|431680346|gb|ELJ46203.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE177]
gi|431707101|gb|ELJ71657.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE82]
gi|431724230|gb|ELJ88170.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE95]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|218700063|ref|YP_002407692.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI39]
gi|386623949|ref|YP_006143677.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O7:K1 str. CE10]
gi|218370049|emb|CAR17825.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
IAI39]
gi|349737687|gb|AEQ12393.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O7:K1 str. CE10]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|386704926|ref|YP_006168773.1| ATP-independent RNA helicase dbpA [Escherichia coli P12b]
gi|415772365|ref|ZP_11485763.1| ATP-independent RNA helicase dbpA [Escherichia coli 3431]
gi|417617885|ref|ZP_12268311.1| ATP-independent RNA helicase dbpA [Escherichia coli G58-1]
gi|419147809|ref|ZP_13692491.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC6B]
gi|425114780|ref|ZP_18516596.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0566]
gi|425282934|ref|ZP_18674008.1| ATP-independent RNA helicase dbpA [Escherichia coli TW00353]
gi|41248|emb|CAA36872.1| unnamed protein product [Escherichia coli]
gi|315619429|gb|EFU99973.1| ATP-independent RNA helicase dbpA [Escherichia coli 3431]
gi|345379348|gb|EGX11262.1| ATP-independent RNA helicase dbpA [Escherichia coli G58-1]
gi|377997913|gb|EHV61010.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC6B]
gi|383103094|gb|AFG40603.1| ATP-independent RNA helicase dbpA [Escherichia coli P12b]
gi|408204105|gb|EKI29106.1| ATP-independent RNA helicase dbpA [Escherichia coli TW00353]
gi|408571166|gb|EKK47121.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0566]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|417670674|ref|ZP_12320176.1| ATP-independent RNA helicase dbpA [Shigella dysenteriae 155-74]
gi|420346600|ref|ZP_14848016.1| ATP-independent RNA helicase dbpA [Shigella boydii 965-58]
gi|332098054|gb|EGJ03027.1| ATP-independent RNA helicase dbpA [Shigella dysenteriae 155-74]
gi|391273317|gb|EIQ32143.1| ATP-independent RNA helicase dbpA [Shigella boydii 965-58]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|425143633|ref|ZP_18543757.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0869]
gi|408596853|gb|EKK70955.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0869]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|424109453|ref|ZP_17843831.1| ATP-independent RNA helicase dbpA [Escherichia coli 93-001]
gi|425173784|ref|ZP_18572023.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA504]
gi|425341734|ref|ZP_18728770.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1848]
gi|425372362|ref|ZP_18757144.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1864]
gi|390665422|gb|EIN42727.1| ATP-independent RNA helicase dbpA [Escherichia coli 93-001]
gi|408096819|gb|EKH29744.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA504]
gi|408264549|gb|EKI85347.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1848]
gi|408296091|gb|EKJ14367.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1864]
Length = 437
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 7 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 66
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 67 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 106
>gi|386619053|ref|YP_006138633.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|432421615|ref|ZP_19664165.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE178]
gi|432558546|ref|ZP_19795226.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE49]
gi|432710375|ref|ZP_19945439.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE6]
gi|333969554|gb|AEG36359.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|430945869|gb|ELC65935.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE178]
gi|431092548|gb|ELD98244.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE49]
gi|431250944|gb|ELF45003.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE6]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|331646674|ref|ZP_08347777.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
gi|417661989|ref|ZP_12311570.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
gi|432894141|ref|ZP_20106102.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE165]
gi|330911207|gb|EGH39717.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
gi|331045426|gb|EGI17553.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
gi|431423483|gb|ELH05610.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE165]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|432397248|ref|ZP_19640031.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE25]
gi|432406208|ref|ZP_19648926.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE28]
gi|432722872|ref|ZP_19957794.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE17]
gi|432727459|ref|ZP_19962340.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE18]
gi|432741146|ref|ZP_19975867.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE23]
gi|432990459|ref|ZP_20179125.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE217]
gi|433110622|ref|ZP_20296491.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE150]
gi|430916722|gb|ELC37782.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE25]
gi|430931487|gb|ELC51939.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE28]
gi|431266838|gb|ELF58373.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE17]
gi|431275247|gb|ELF66292.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE18]
gi|431285737|gb|ELF76573.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE23]
gi|431497334|gb|ELH76912.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE217]
gi|431629792|gb|ELI98151.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE150]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|420335718|ref|ZP_14837325.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-315]
gi|391265351|gb|EIQ24324.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-315]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|419928197|ref|ZP_14445914.1| ATP-dependent RNA helicase DbpA [Escherichia coli 541-1]
gi|388405968|gb|EIL66380.1| ATP-dependent RNA helicase DbpA [Escherichia coli 541-1]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|423114048|ref|ZP_17101739.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5245]
gi|376387693|gb|EHT00403.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5245]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHVDASLFQTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R +++++NIK+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLANIKILTLCGGQPFGAQRDSLQ-HAPHII 126
>gi|423108086|ref|ZP_17095781.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5243]
gi|376385995|gb|EHS98714.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5243]
Length = 462
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRELA Q
Sbjct: 32 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHVDASLFQTQSLVLCPTRELADQ 91
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R +++++NIK+ GG P + L+ H P I+
Sbjct: 92 VAGELRRLARFLANIKILTLCGGQPFGAQRDSLQ-HAPHII 131
>gi|194433859|ref|ZP_03066133.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
gi|416283788|ref|ZP_11646958.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
gi|194417962|gb|EDX34057.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
gi|320180214|gb|EFW55149.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|191165035|ref|ZP_03026879.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
gi|309797091|ref|ZP_07691489.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
gi|417159284|ref|ZP_11996434.1| ATP-independent RNA helicase DbpA [Escherichia coli 99.0741]
gi|417596449|ref|ZP_12247102.1| ATP-independent RNA helicase dbpA [Escherichia coli 3030-1]
gi|419277623|ref|ZP_13819884.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10E]
gi|419375205|ref|ZP_13916241.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14B]
gi|419380413|ref|ZP_13921378.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14C]
gi|419385801|ref|ZP_13926686.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14D]
gi|419951604|ref|ZP_14467791.1| ATP-dependent RNA helicase DbpA [Escherichia coli CUMT8]
gi|432967462|ref|ZP_20156378.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE203]
gi|190904807|gb|EDV64512.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
gi|308119261|gb|EFO56523.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
gi|345357159|gb|EGW89358.1| ATP-independent RNA helicase dbpA [Escherichia coli 3030-1]
gi|378132792|gb|EHW94144.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10E]
gi|378222851|gb|EHX83086.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14B]
gi|378230532|gb|EHX90650.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14C]
gi|378233478|gb|EHX93565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14D]
gi|386175299|gb|EIH47290.1| ATP-independent RNA helicase DbpA [Escherichia coli 99.0741]
gi|388414127|gb|EIL74095.1| ATP-dependent RNA helicase DbpA [Escherichia coli CUMT8]
gi|431473434|gb|ELH53268.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE203]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|422834818|ref|ZP_16882877.1| ATP-independent RNA helicase dbpA [Escherichia coli E101]
gi|371613576|gb|EHO02069.1| ATP-independent RNA helicase dbpA [Escherichia coli E101]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|387606918|ref|YP_006095774.1| ATP-independent RNA helicase [Escherichia coli 042]
gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|193066966|ref|ZP_03047935.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
gi|192959556|gb|EDV89990.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|157156397|ref|YP_001462652.1| ATP-dependent RNA helicase DbpA [Escherichia coli E24377A]
gi|193062707|ref|ZP_03043801.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
gi|194426050|ref|ZP_03058606.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
gi|260843691|ref|YP_003221469.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O103:H2 str. 12009]
gi|260855042|ref|YP_003228933.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
11368]
gi|260867791|ref|YP_003234193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O111:H- str. 11128]
gi|300822487|ref|ZP_07102626.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
gi|300904996|ref|ZP_07122814.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
gi|301305840|ref|ZP_07211925.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
gi|331667742|ref|ZP_08368606.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
gi|331677132|ref|ZP_08377828.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
gi|415790204|ref|ZP_11494923.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
gi|415796583|ref|ZP_11497670.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
gi|415819271|ref|ZP_11508714.1| ATP-independent RNA helicase dbpA [Escherichia coli OK1180]
gi|415865102|ref|ZP_11538036.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
gi|415879026|ref|ZP_11544536.1| ATP-independent RNA helicase DbpA [Escherichia coli MS 79-10]
gi|417133963|ref|ZP_11978748.1| ATP-independent RNA helicase DbpA [Escherichia coli 5.0588]
gi|417172708|ref|ZP_12002741.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.2608]
gi|417181436|ref|ZP_12008571.1| ATP-independent RNA helicase DbpA [Escherichia coli 93.0624]
gi|417199635|ref|ZP_12017038.1| ATP-independent RNA helicase DbpA [Escherichia coli 4.0522]
gi|417223109|ref|ZP_12026549.1| ATP-independent RNA helicase DbpA [Escherichia coli 96.154]
gi|417253881|ref|ZP_12045637.1| ATP-independent RNA helicase DbpA [Escherichia coli 4.0967]
gi|417266357|ref|ZP_12053725.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.3884]
gi|417297650|ref|ZP_12084894.1| ATP-independent RNA helicase DbpA [Escherichia coli 900105 (10e)]
gi|417591351|ref|ZP_12242055.1| ATP-independent RNA helicase dbpA [Escherichia coli 2534-86]
gi|417602006|ref|ZP_12252579.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_94C]
gi|417623110|ref|ZP_12273418.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_H.1.8]
gi|417638719|ref|ZP_12288878.1| ATP-independent RNA helicase dbpA [Escherichia coli TX1999]
gi|418944423|ref|ZP_13497486.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H43 str.
T22]
gi|419169387|ref|ZP_13713780.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC7A]
gi|419180414|ref|ZP_13724035.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7C]
gi|419185927|ref|ZP_13729448.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7D]
gi|419196611|ref|ZP_13740009.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC8A]
gi|419209047|ref|ZP_13752149.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8C]
gi|419215264|ref|ZP_13758279.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8D]
gi|419220949|ref|ZP_13763890.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8E]
gi|419226344|ref|ZP_13769215.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9A]
gi|419231982|ref|ZP_13774767.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9B]
gi|419237411|ref|ZP_13780143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9C]
gi|419242925|ref|ZP_13785570.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9D]
gi|419248674|ref|ZP_13791270.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9E]
gi|419254498|ref|ZP_13797026.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10A]
gi|419260707|ref|ZP_13803139.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10B]
gi|419266627|ref|ZP_13808994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10C]
gi|419283656|ref|ZP_13825850.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10F]
gi|419289261|ref|ZP_13831357.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC11A]
gi|419294451|ref|ZP_13836499.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC11B]
gi|419299858|ref|ZP_13841864.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11C]
gi|419305989|ref|ZP_13847897.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11D]
gi|419311076|ref|ZP_13852946.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11E]
gi|419316358|ref|ZP_13858177.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC12A]
gi|419322342|ref|ZP_13864065.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12B]
gi|419328459|ref|ZP_13870084.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC12C]
gi|419334084|ref|ZP_13875628.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12D]
gi|419339296|ref|ZP_13880778.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12E]
gi|419391173|ref|ZP_13931995.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15A]
gi|419396210|ref|ZP_13936989.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15B]
gi|419401589|ref|ZP_13942316.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15C]
gi|419406775|ref|ZP_13947467.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15D]
gi|419412280|ref|ZP_13952943.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15E]
gi|419871866|ref|ZP_14393914.1| ATP-dependent RNA helicase DbpA [Escherichia coli O103:H2 str.
CVM9450]
gi|419876025|ref|ZP_14397806.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CVM9534]
gi|419879436|ref|ZP_14400868.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CVM9545]
gi|419897835|ref|ZP_14417410.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CVM9574]
gi|419906136|ref|ZP_14425064.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O26:H11 str. CVM10026]
gi|420087651|ref|ZP_14599599.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CVM9602]
gi|420116642|ref|ZP_14626020.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10021]
gi|420118778|ref|ZP_14628098.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10030]
gi|420125356|ref|ZP_14634169.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10224]
gi|420131741|ref|ZP_14640155.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM9952]
gi|420385267|ref|ZP_14884633.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa12]
gi|420391053|ref|ZP_14890313.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
EPEC C342-62]
gi|422762614|ref|ZP_16816370.1| DEAD/DEAH box helicase [Escherichia coli E1167]
gi|423709394|ref|ZP_17683772.1| ATP-independent RNA helicase dbpA [Escherichia coli B799]
gi|424751628|ref|ZP_18179655.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424765402|ref|ZP_18192802.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424770568|ref|ZP_18197763.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425378949|ref|ZP_18763118.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1865]
gi|432376540|ref|ZP_19619539.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE12]
gi|432533572|ref|ZP_19770559.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE234]
gi|432805443|ref|ZP_20039383.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE91]
gi|432834394|ref|ZP_20067935.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE136]
gi|432933931|ref|ZP_20133548.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE184]
gi|432946769|ref|ZP_20142318.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE196]
gi|433042835|ref|ZP_20230351.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE117]
gi|433129705|ref|ZP_20315164.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE163]
gi|433134502|ref|ZP_20319866.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE166]
gi|433193353|ref|ZP_20377360.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE90]
gi|157078427|gb|ABV18135.1| ATP-independent RNA helicase DbpA [Escherichia coli E24377A]
gi|192931829|gb|EDV84429.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
gi|194416105|gb|EDX32371.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
gi|257753691|dbj|BAI25193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O26:H11 str. 11368]
gi|257758838|dbj|BAI30335.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O103:H2 str. 12009]
gi|257764147|dbj|BAI35642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O111:H- str. 11128]
gi|300403145|gb|EFJ86683.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
gi|300524903|gb|EFK45972.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
gi|300838930|gb|EFK66690.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
gi|315254386|gb|EFU34354.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
gi|323153565|gb|EFZ39816.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
gi|323162444|gb|EFZ48296.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
gi|323179693|gb|EFZ65254.1| ATP-independent RNA helicase dbpA [Escherichia coli OK1180]
gi|324117462|gb|EGC11368.1| DEAD/DEAH box helicase [Escherichia coli E1167]
gi|331065327|gb|EGI37222.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
gi|331075821|gb|EGI47119.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
gi|342927034|gb|EGU95756.1| ATP-independent RNA helicase DbpA [Escherichia coli MS 79-10]
gi|345341838|gb|EGW74238.1| ATP-independent RNA helicase dbpA [Escherichia coli 2534-86]
gi|345351240|gb|EGW83503.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_94C]
gi|345380195|gb|EGX12095.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_H.1.8]
gi|345394517|gb|EGX24277.1| ATP-independent RNA helicase dbpA [Escherichia coli TX1999]
gi|375320269|gb|EHS66251.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H43 str.
T22]
gi|378017814|gb|EHV80684.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC7A]
gi|378026335|gb|EHV88974.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7C]
gi|378031351|gb|EHV93939.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7D]
gi|378049927|gb|EHW12263.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC8A]
gi|378057306|gb|EHW19540.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8C]
gi|378065222|gb|EHW27371.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8D]
gi|378068765|gb|EHW30861.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8E]
gi|378077876|gb|EHW39869.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9A]
gi|378080199|gb|EHW42164.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9B]
gi|378086083|gb|EHW47963.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9C]
gi|378093132|gb|EHW54950.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9D]
gi|378097810|gb|EHW59557.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9E]
gi|378103155|gb|EHW64826.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10A]
gi|378109910|gb|EHW71510.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10B]
gi|378114026|gb|EHW75584.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10C]
gi|378131760|gb|EHW93114.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC11A]
gi|378135825|gb|EHW97127.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10F]
gi|378143400|gb|EHX04592.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC11B]
gi|378151234|gb|EHX12347.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11D]
gi|378153312|gb|EHX14397.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11C]
gi|378159674|gb|EHX20678.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11E]
gi|378171265|gb|EHX32137.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12B]
gi|378172370|gb|EHX33222.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC12A]
gi|378173981|gb|EHX34810.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC12C]
gi|378186297|gb|EHX46920.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12D]
gi|378192396|gb|EHX52955.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12E]
gi|378239655|gb|EHX99635.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15A]
gi|378248548|gb|EHY08462.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15B]
gi|378249243|gb|EHY09153.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15C]
gi|378255900|gb|EHY15755.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15D]
gi|378260468|gb|EHY20273.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15E]
gi|385706184|gb|EIG43238.1| ATP-independent RNA helicase dbpA [Escherichia coli B799]
gi|386151817|gb|EIH03106.1| ATP-independent RNA helicase DbpA [Escherichia coli 5.0588]
gi|386180406|gb|EIH57880.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.2608]
gi|386185258|gb|EIH67991.1| ATP-independent RNA helicase DbpA [Escherichia coli 93.0624]
gi|386188165|gb|EIH76973.1| ATP-independent RNA helicase DbpA [Escherichia coli 4.0522]
gi|386202911|gb|EII01902.1| ATP-independent RNA helicase DbpA [Escherichia coli 96.154]
gi|386215808|gb|EII32300.1| ATP-independent RNA helicase DbpA [Escherichia coli 4.0967]
gi|386231167|gb|EII58515.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.3884]
gi|386258862|gb|EIJ14339.1| ATP-independent RNA helicase DbpA [Escherichia coli 900105 (10e)]
gi|388336069|gb|EIL02617.1| ATP-dependent RNA helicase DbpA [Escherichia coli O103:H2 str.
CVM9450]
gi|388345839|gb|EIL11583.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CVM9534]
gi|388354657|gb|EIL19555.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CVM9574]
gi|388371073|gb|EIL34563.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CVM9545]
gi|388379827|gb|EIL42465.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O26:H11 str. CVM10026]
gi|391307199|gb|EIQ64937.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa12]
gi|391313529|gb|EIQ71112.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
EPEC C342-62]
gi|394392431|gb|EJE69213.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CVM9602]
gi|394395247|gb|EJE71719.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10224]
gi|394403118|gb|EJE78789.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10021]
gi|394431180|gb|EJF03414.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM9952]
gi|394432769|gb|EJF04836.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10030]
gi|408300046|gb|EKJ17800.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1865]
gi|421936626|gb|EKT94288.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421939289|gb|EKT96817.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421942100|gb|EKT99455.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CFSAN001632]
gi|430899764|gb|ELC21857.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE12]
gi|431062217|gb|ELD71495.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE234]
gi|431355809|gb|ELG42504.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE91]
gi|431386230|gb|ELG70187.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE136]
gi|431454403|gb|ELH34780.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE184]
gi|431459924|gb|ELH40214.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE196]
gi|431558465|gb|ELI32086.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE117]
gi|431649495|gb|ELJ16851.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE163]
gi|431659897|gb|ELJ26786.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE166]
gi|431718826|gb|ELJ82896.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE90]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|432674350|ref|ZP_19909834.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE142]
gi|431216329|gb|ELF13968.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE142]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|419924870|ref|ZP_14442739.1| ATP-dependent RNA helicase DbpA [Escherichia coli 541-15]
gi|388388603|gb|EIL50169.1| ATP-dependent RNA helicase DbpA [Escherichia coli 541-15]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|417233555|ref|ZP_12034319.1| ATP-independent RNA helicase DbpA [Escherichia coli 5.0959]
gi|386203821|gb|EII08339.1| ATP-independent RNA helicase DbpA [Escherichia coli 5.0959]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|422808949|ref|ZP_16857360.1| Cold-shock DEAD-box protein A [Listeria monocytogenes FSL J1-208]
gi|378752563|gb|EHY63148.1| Cold-shock DEAD-box protein A [Listeria monocytogenes FSL J1-208]
Length = 516
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP + G D++ QA++G GKTA F L + +++ +NV L++ TRE
Sbjct: 22 FEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S+E + S Y +++V +GG I + LK NPQIV
Sbjct: 82 LAIQVSEELYKLS-YDKHVRVLAVYGGSDISRQIRSLK-KNPQIV 124
>gi|422975788|ref|ZP_16976782.1| ATP-independent RNA helicase dbpA [Escherichia coli TA124]
gi|371594770|gb|EHN83629.1| ATP-independent RNA helicase dbpA [Escherichia coli TA124]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|417634149|ref|ZP_12284364.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_S1191]
gi|345388797|gb|EGX18606.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_S1191]
Length = 451
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|297521633|ref|ZP_06940019.1| ATP-dependent RNA helicase DbpA [Escherichia coli OP50]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|427804487|ref|ZP_18971554.1| ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|427809068|ref|ZP_18976133.1| ATP-dependent RNA helicase [Escherichia coli]
gi|443617437|ref|YP_007381293.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O78]
gi|412962669|emb|CCK46584.1| ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|412969247|emb|CCJ43878.1| ATP-dependent RNA helicase [Escherichia coli]
gi|443421945|gb|AGC86849.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O78]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|419914882|ref|ZP_14433262.1| ATP-dependent RNA helicase DbpA [Escherichia coli KD1]
gi|388385214|gb|EIL46910.1| ATP-dependent RNA helicase DbpA [Escherichia coli KD1]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|419866424|ref|ZP_14388784.1| ATP-dependent RNA helicase DbpA [Escherichia coli O103:H25 str.
CVM9340]
gi|388335004|gb|EIL01581.1| ATP-dependent RNA helicase DbpA [Escherichia coli O103:H25 str.
CVM9340]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|419805731|ref|ZP_14330859.1| ATP-dependent RNA helicase DbpA [Escherichia coli AI27]
gi|384471250|gb|EIE55333.1| ATP-dependent RNA helicase DbpA [Escherichia coli AI27]
Length = 437
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 7 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 66
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 67 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 106
>gi|418958313|ref|ZP_13510230.1| ATP-independent RNA helicase dbpA [Escherichia coli J53]
gi|425272442|ref|ZP_18663892.1| ATP-independent RNA helicase dbpA [Escherichia coli TW15901]
gi|384378833|gb|EIE36707.1| ATP-independent RNA helicase dbpA [Escherichia coli J53]
gi|408195135|gb|EKI20564.1| ATP-independent RNA helicase dbpA [Escherichia coli TW15901]
Length = 437
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 7 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 66
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 67 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 106
>gi|419191199|ref|ZP_13734665.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC7E]
gi|378041262|gb|EHW03725.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC7E]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|416816611|ref|ZP_11892510.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
3256-97]
gi|419120083|ref|ZP_13665054.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5B]
gi|320653569|gb|EFX21674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|377969608|gb|EHV32984.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5B]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
gi|432679904|ref|ZP_19915289.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE143]
gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
gi|431222327|gb|ELF19609.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE143]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|15801822|ref|NP_287840.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EDL933]
gi|15831181|ref|NP_309954.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
Sakai]
gi|168749013|ref|ZP_02774035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4113]
gi|168756028|ref|ZP_02781035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4401]
gi|168769429|ref|ZP_02794436.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4486]
gi|168775172|ref|ZP_02800179.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4196]
gi|168782877|ref|ZP_02807884.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4076]
gi|168788327|ref|ZP_02813334.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC869]
gi|168799657|ref|ZP_02824664.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC508]
gi|208811167|ref|ZP_03253000.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4206]
gi|208815022|ref|ZP_03256201.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4045]
gi|208820345|ref|ZP_03260665.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4042]
gi|209399223|ref|YP_002270403.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4115]
gi|217329397|ref|ZP_03445477.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
TW14588]
gi|254792938|ref|YP_003077775.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
TW14359]
gi|261224337|ref|ZP_05938618.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O157:H7 str. FRIK2000]
gi|261257409|ref|ZP_05949942.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O157:H7 str. FRIK966]
gi|291282438|ref|YP_003499256.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
CB9615]
gi|331652393|ref|ZP_08353412.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
gi|387506544|ref|YP_006158800.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
RM12579]
gi|387882405|ref|YP_006312707.1| ATP-dependent RNA helicase DbpA [Escherichia coli Xuzhou21]
gi|416311270|ref|ZP_11656958.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
1044]
gi|416320676|ref|ZP_11663075.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC1212]
gi|416329082|ref|ZP_11668585.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
1125]
gi|416826127|ref|ZP_11897099.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
5905]
gi|419045123|ref|ZP_13592073.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3A]
gi|419050907|ref|ZP_13597792.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3B]
gi|419056927|ref|ZP_13603751.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3C]
gi|419062305|ref|ZP_13609052.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3D]
gi|419069199|ref|ZP_13614882.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3E]
gi|419080261|ref|ZP_13625727.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4A]
gi|419086052|ref|ZP_13631429.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4B]
gi|419092255|ref|ZP_13637552.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4C]
gi|419097999|ref|ZP_13643216.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4D]
gi|419103708|ref|ZP_13648855.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4E]
gi|419109237|ref|ZP_13654311.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4F]
gi|419114397|ref|ZP_13659425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5A]
gi|419125795|ref|ZP_13670686.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5C]
gi|419131264|ref|ZP_13676108.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5D]
gi|419136138|ref|ZP_13680939.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC5E]
gi|420269238|ref|ZP_14771620.1| ATP-independent RNA helicase dbpA [Escherichia coli PA22]
gi|420275009|ref|ZP_14777319.1| ATP-independent RNA helicase dbpA [Escherichia coli PA40]
gi|420286212|ref|ZP_14788415.1| ATP-independent RNA helicase dbpA [Escherichia coli TW10246]
gi|420294040|ref|ZP_14796155.1| ATP-independent RNA helicase dbpA [Escherichia coli TW11039]
gi|420297743|ref|ZP_14799812.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09109]
gi|420303823|ref|ZP_14805835.1| ATP-independent RNA helicase dbpA [Escherichia coli TW10119]
gi|420309322|ref|ZP_14811273.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1738]
gi|420314523|ref|ZP_14816412.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1734]
gi|421811956|ref|ZP_16247717.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0416]
gi|421818019|ref|ZP_16253547.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0821]
gi|421823677|ref|ZP_16259082.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK920]
gi|421830464|ref|ZP_16265771.1| ATP-independent RNA helicase dbpA [Escherichia coli PA7]
gi|423700334|ref|ZP_17674821.1| ATP-independent RNA helicase dbpA [Escherichia coli PA31]
gi|424077030|ref|ZP_17814167.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA505]
gi|424083378|ref|ZP_17820021.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA517]
gi|424089896|ref|ZP_17825977.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1996]
gi|424115170|ref|ZP_17849153.1| ATP-independent RNA helicase dbpA [Escherichia coli PA3]
gi|424121465|ref|ZP_17854960.1| ATP-independent RNA helicase dbpA [Escherichia coli PA5]
gi|424127650|ref|ZP_17860679.1| ATP-independent RNA helicase dbpA [Escherichia coli PA9]
gi|424146861|ref|ZP_17878393.1| ATP-independent RNA helicase dbpA [Escherichia coli PA15]
gi|424152864|ref|ZP_17883926.1| ATP-independent RNA helicase dbpA [Escherichia coli PA24]
gi|424226676|ref|ZP_17889419.1| ATP-independent RNA helicase dbpA [Escherichia coli PA25]
gi|424302914|ref|ZP_17895274.1| ATP-independent RNA helicase dbpA [Escherichia coli PA28]
gi|424442809|ref|ZP_17901045.1| ATP-independent RNA helicase dbpA [Escherichia coli PA32]
gi|424461700|ref|ZP_17912365.1| ATP-independent RNA helicase dbpA [Escherichia coli PA39]
gi|424474687|ref|ZP_17924158.1| ATP-independent RNA helicase dbpA [Escherichia coli PA42]
gi|424480526|ref|ZP_17929608.1| ATP-independent RNA helicase dbpA [Escherichia coli TW07945]
gi|424486657|ref|ZP_17935338.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09098]
gi|424492973|ref|ZP_17941001.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09195]
gi|424499910|ref|ZP_17946973.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4203]
gi|424506087|ref|ZP_17952648.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4196]
gi|424512418|ref|ZP_17958406.1| ATP-independent RNA helicase dbpA [Escherichia coli TW14313]
gi|424519850|ref|ZP_17964105.1| ATP-independent RNA helicase dbpA [Escherichia coli TW14301]
gi|424525773|ref|ZP_17969609.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4421]
gi|424531948|ref|ZP_17975401.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4422]
gi|424537945|ref|ZP_17981011.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4013]
gi|424543874|ref|ZP_17986466.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4402]
gi|424550160|ref|ZP_17992162.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4439]
gi|424556400|ref|ZP_17997930.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4436]
gi|424562749|ref|ZP_18003858.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4437]
gi|424574952|ref|ZP_18015183.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1845]
gi|424580860|ref|ZP_18020627.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1863]
gi|425097584|ref|ZP_18500442.1| ATP-independent RNA helicase dbpA [Escherichia coli 3.4870]
gi|425103808|ref|ZP_18506231.1| ATP-independent RNA helicase dbpA [Escherichia coli 5.2239]
gi|425109626|ref|ZP_18511680.1| ATP-independent RNA helicase dbpA [Escherichia coli 6.0172]
gi|425125419|ref|ZP_18526757.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0586]
gi|425131364|ref|ZP_18532303.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.2524]
gi|425137722|ref|ZP_18538248.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0833]
gi|425149735|ref|ZP_18549459.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.0221]
gi|425155552|ref|ZP_18554930.1| ATP-independent RNA helicase dbpA [Escherichia coli PA34]
gi|425162008|ref|ZP_18561017.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA506]
gi|425167653|ref|ZP_18566274.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA507]
gi|425179733|ref|ZP_18577590.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1999]
gi|425192796|ref|ZP_18589713.1| ATP-independent RNA helicase dbpA [Escherichia coli NE1487]
gi|425199195|ref|ZP_18595589.1| ATP-independent RNA helicase dbpA [Escherichia coli NE037]
gi|425205702|ref|ZP_18601644.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK2001]
gi|425211393|ref|ZP_18606943.1| ATP-independent RNA helicase dbpA [Escherichia coli PA4]
gi|425217498|ref|ZP_18612623.1| ATP-independent RNA helicase dbpA [Escherichia coli PA23]
gi|425224058|ref|ZP_18618702.1| ATP-independent RNA helicase dbpA [Escherichia coli PA49]
gi|425230256|ref|ZP_18624461.1| ATP-independent RNA helicase dbpA [Escherichia coli PA45]
gi|425236415|ref|ZP_18630238.1| ATP-independent RNA helicase dbpA [Escherichia coli TT12B]
gi|425242536|ref|ZP_18635974.1| ATP-independent RNA helicase dbpA [Escherichia coli MA6]
gi|425248559|ref|ZP_18641600.1| ATP-independent RNA helicase dbpA [Escherichia coli 5905]
gi|425254471|ref|ZP_18647123.1| ATP-independent RNA helicase dbpA [Escherichia coli CB7326]
gi|425294269|ref|ZP_18684620.1| ATP-independent RNA helicase dbpA [Escherichia coli PA38]
gi|425329154|ref|ZP_18717177.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1846]
gi|425335325|ref|ZP_18722861.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1847]
gi|425353832|ref|ZP_18740033.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1850]
gi|425359808|ref|ZP_18745597.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1856]
gi|425365941|ref|ZP_18751288.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1862]
gi|425385197|ref|ZP_18768891.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1866]
gi|425391895|ref|ZP_18775156.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1868]
gi|425398013|ref|ZP_18780860.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1869]
gi|425404021|ref|ZP_18786425.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1870]
gi|425410572|ref|ZP_18792495.1| ATP-independent RNA helicase dbpA [Escherichia coli NE098]
gi|425416855|ref|ZP_18798277.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK523]
gi|425428097|ref|ZP_18808888.1| ATP-independent RNA helicase dbpA [Escherichia coli 0.1304]
gi|428952748|ref|ZP_19024675.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.1042]
gi|428958583|ref|ZP_19030060.1| ATP-independent RNA helicase dbpA [Escherichia coli 89.0511]
gi|428965096|ref|ZP_19036037.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.0091]
gi|428970905|ref|ZP_19041377.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.0039]
gi|428977460|ref|ZP_19047429.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.2281]
gi|428983254|ref|ZP_19052787.1| ATP-independent RNA helicase dbpA [Escherichia coli 93.0055]
gi|428989595|ref|ZP_19058680.1| ATP-independent RNA helicase dbpA [Escherichia coli 93.0056]
gi|428995308|ref|ZP_19064045.1| ATP-independent RNA helicase dbpA [Escherichia coli 94.0618]
gi|429001495|ref|ZP_19069801.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.0183]
gi|429007658|ref|ZP_19075340.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.1288]
gi|429014121|ref|ZP_19081160.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.0943]
gi|429020139|ref|ZP_19086759.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0428]
gi|429026005|ref|ZP_19092184.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0427]
gi|429032174|ref|ZP_19097837.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0939]
gi|429038299|ref|ZP_19103553.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0932]
gi|429044322|ref|ZP_19109145.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0107]
gi|429049842|ref|ZP_19114461.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0003]
gi|429055128|ref|ZP_19119549.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.1742]
gi|429060823|ref|ZP_19124902.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0007]
gi|429066771|ref|ZP_19130382.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0672]
gi|429072886|ref|ZP_19136191.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0678]
gi|429078225|ref|ZP_19141399.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0713]
gi|429825918|ref|ZP_19357146.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0109]
gi|429832210|ref|ZP_19362780.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0010]
gi|432453887|ref|ZP_19696116.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE193]
gi|433032955|ref|ZP_20220713.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE112]
gi|444924444|ref|ZP_21243919.1| ATP-independent RNA helicase dbpA [Escherichia coli 09BKT078844]
gi|444930417|ref|ZP_21249518.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0814]
gi|444935685|ref|ZP_21254550.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0815]
gi|444941334|ref|ZP_21259922.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0816]
gi|444946822|ref|ZP_21265190.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0839]
gi|444952510|ref|ZP_21270668.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0848]
gi|444957986|ref|ZP_21275910.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1753]
gi|444963251|ref|ZP_21280933.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1775]
gi|444969037|ref|ZP_21286460.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1793]
gi|444974435|ref|ZP_21291641.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1805]
gi|444979934|ref|ZP_21296889.1| ATP-independent RNA helicase dbpA [Escherichia coli ATCC 700728]
gi|444985235|ref|ZP_21302059.1| ATP-independent RNA helicase dbpA [Escherichia coli PA11]
gi|444990531|ref|ZP_21307225.1| ATP-independent RNA helicase dbpA [Escherichia coli PA19]
gi|444995773|ref|ZP_21312323.1| ATP-independent RNA helicase dbpA [Escherichia coli PA13]
gi|445001400|ref|ZP_21317826.1| ATP-independent RNA helicase dbpA [Escherichia coli PA2]
gi|445006824|ref|ZP_21323120.1| ATP-independent RNA helicase dbpA [Escherichia coli PA47]
gi|445017718|ref|ZP_21333723.1| ATP-independent RNA helicase dbpA [Escherichia coli PA8]
gi|445023307|ref|ZP_21339181.1| ATP-independent RNA helicase dbpA [Escherichia coli 7.1982]
gi|445028544|ref|ZP_21344273.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1781]
gi|445034021|ref|ZP_21349595.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1762]
gi|445039688|ref|ZP_21355110.1| ATP-independent RNA helicase dbpA [Escherichia coli PA35]
gi|445044884|ref|ZP_21360184.1| ATP-independent RNA helicase dbpA [Escherichia coli 3.4880]
gi|445056219|ref|ZP_21371122.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0670]
gi|452967900|ref|ZP_21966127.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4009]
gi|12515409|gb|AAG56454.1|AE005371_10 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
gi|13361392|dbj|BAB35350.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
gi|187769343|gb|EDU33187.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4196]
gi|188016533|gb|EDU54655.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4113]
gi|188999660|gb|EDU68646.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4076]
gi|189356796|gb|EDU75215.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4401]
gi|189361561|gb|EDU79980.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4486]
gi|189371812|gb|EDU90228.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC869]
gi|189377976|gb|EDU96392.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC508]
gi|208724673|gb|EDZ74381.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4206]
gi|208731670|gb|EDZ80358.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4045]
gi|208740468|gb|EDZ88150.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4042]
gi|209160623|gb|ACI38056.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4115]
gi|209771330|gb|ACI83977.1| ATP-dependent RNA helicase [Escherichia coli]
gi|209771332|gb|ACI83978.1| ATP-dependent RNA helicase [Escherichia coli]
gi|209771334|gb|ACI83979.1| ATP-dependent RNA helicase [Escherichia coli]
gi|209771336|gb|ACI83980.1| ATP-dependent RNA helicase [Escherichia coli]
gi|217317836|gb|EEC26264.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
TW14588]
gi|254592338|gb|ACT71699.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O157:H7 str. TW14359]
gi|290762311|gb|ADD56272.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
CB9615]
gi|320189895|gb|EFW64547.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC1212]
gi|320659158|gb|EFX26750.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
5905]
gi|326340988|gb|EGD64781.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
1125]
gi|326343226|gb|EGD66993.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
1044]
gi|331050671|gb|EGI22729.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
gi|374358538|gb|AEZ40245.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
RM12579]
gi|377896241|gb|EHU60642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3A]
gi|377896325|gb|EHU60723.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3B]
gi|377907924|gb|EHU72146.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3C]
gi|377913036|gb|EHU77181.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3D]
gi|377915651|gb|EHU79759.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3E]
gi|377930079|gb|EHU93966.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4A]
gi|377934831|gb|EHU98657.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4B]
gi|377945338|gb|EHV09035.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4C]
gi|377945623|gb|EHV09314.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4D]
gi|377950954|gb|EHV14574.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4E]
gi|377959891|gb|EHV23383.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4F]
gi|377963553|gb|EHV26997.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5A]
gi|377976756|gb|EHV40058.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5C]
gi|377977630|gb|EHV40914.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5D]
gi|377985326|gb|EHV48538.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC5E]
gi|386795863|gb|AFJ28897.1| ATP-dependent RNA helicase DbpA [Escherichia coli Xuzhou21]
gi|390646765|gb|EIN25767.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1996]
gi|390647227|gb|EIN26142.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA517]
gi|390647677|gb|EIN26526.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA505]
gi|390684286|gb|EIN59911.1| ATP-independent RNA helicase dbpA [Escherichia coli PA3]
gi|390686496|gb|EIN61848.1| ATP-independent RNA helicase dbpA [Escherichia coli PA5]
gi|390687218|gb|EIN62506.1| ATP-independent RNA helicase dbpA [Escherichia coli PA9]
gi|390704769|gb|EIN78599.1| ATP-independent RNA helicase dbpA [Escherichia coli PA15]
gi|390716606|gb|EIN89403.1| ATP-independent RNA helicase dbpA [Escherichia coli PA22]
gi|390728528|gb|EIO00823.1| ATP-independent RNA helicase dbpA [Escherichia coli PA25]
gi|390728931|gb|EIO01178.1| ATP-independent RNA helicase dbpA [Escherichia coli PA24]
gi|390730978|gb|EIO02922.1| ATP-independent RNA helicase dbpA [Escherichia coli PA28]
gi|390747086|gb|EIO17672.1| ATP-independent RNA helicase dbpA [Escherichia coli PA31]
gi|390747892|gb|EIO18435.1| ATP-independent RNA helicase dbpA [Escherichia coli PA32]
gi|390759938|gb|EIO29296.1| ATP-independent RNA helicase dbpA [Escherichia coli PA40]
gi|390772990|gb|EIO41468.1| ATP-independent RNA helicase dbpA [Escherichia coli PA42]
gi|390773597|gb|EIO41961.1| ATP-independent RNA helicase dbpA [Escherichia coli PA39]
gi|390791858|gb|EIO59221.1| ATP-independent RNA helicase dbpA [Escherichia coli TW10246]
gi|390795654|gb|EIO62938.1| ATP-independent RNA helicase dbpA [Escherichia coli TW11039]
gi|390798782|gb|EIO65970.1| ATP-independent RNA helicase dbpA [Escherichia coli TW07945]
gi|390809230|gb|EIO76032.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09109]
gi|390813159|gb|EIO79802.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09098]
gi|390817424|gb|EIO83860.1| ATP-independent RNA helicase dbpA [Escherichia coli TW10119]
gi|390832004|gb|EIO97329.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4203]
gi|390834396|gb|EIO99356.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09195]
gi|390835526|gb|EIP00286.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4196]
gi|390851644|gb|EIP14907.1| ATP-independent RNA helicase dbpA [Escherichia coli TW14301]
gi|390852839|gb|EIP15974.1| ATP-independent RNA helicase dbpA [Escherichia coli TW14313]
gi|390853637|gb|EIP16620.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4421]
gi|390866027|gb|EIP28011.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4422]
gi|390869656|gb|EIP31286.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4013]
gi|390877026|gb|EIP37978.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4402]
gi|390882237|gb|EIP42780.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4439]
gi|390886773|gb|EIP46854.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4436]
gi|390899628|gb|EIP58866.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4437]
gi|390901964|gb|EIP61107.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1738]
gi|390909806|gb|EIP68570.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1734]
gi|390921909|gb|EIP80028.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1863]
gi|390923183|gb|EIP81153.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1845]
gi|408068708|gb|EKH03124.1| ATP-independent RNA helicase dbpA [Escherichia coli PA7]
gi|408072260|gb|EKH06582.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK920]
gi|408079896|gb|EKH13998.1| ATP-independent RNA helicase dbpA [Escherichia coli PA34]
gi|408084049|gb|EKH17836.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA506]
gi|408086523|gb|EKH20048.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA507]
gi|408102084|gb|EKH34501.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1999]
gi|408113937|gb|EKH45517.1| ATP-independent RNA helicase dbpA [Escherichia coli NE1487]
gi|408121169|gb|EKH52132.1| ATP-independent RNA helicase dbpA [Escherichia coli NE037]
gi|408126629|gb|EKH57188.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK2001]
gi|408131941|gb|EKH61956.1| ATP-independent RNA helicase dbpA [Escherichia coli PA4]
gi|408144266|gb|EKH73507.1| ATP-independent RNA helicase dbpA [Escherichia coli PA23]
gi|408146275|gb|EKH75416.1| ATP-independent RNA helicase dbpA [Escherichia coli PA49]
gi|408149731|gb|EKH78397.1| ATP-independent RNA helicase dbpA [Escherichia coli PA45]
gi|408160488|gb|EKH88501.1| ATP-independent RNA helicase dbpA [Escherichia coli TT12B]
gi|408165331|gb|EKH93025.1| ATP-independent RNA helicase dbpA [Escherichia coli MA6]
gi|408167544|gb|EKH95055.1| ATP-independent RNA helicase dbpA [Escherichia coli 5905]
gi|408179089|gb|EKI05779.1| ATP-independent RNA helicase dbpA [Escherichia coli CB7326]
gi|408222615|gb|EKI46472.1| ATP-independent RNA helicase dbpA [Escherichia coli PA38]
gi|408251603|gb|EKI73332.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1846]
gi|408261531|gb|EKI82517.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1847]
gi|408279686|gb|EKI99286.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1850]
gi|408281339|gb|EKJ00757.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1856]
gi|408294529|gb|EKJ12921.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1862]
gi|408312348|gb|EKJ29193.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1868]
gi|408312576|gb|EKJ29406.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1866]
gi|408326513|gb|EKJ42321.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1869]
gi|408329886|gb|EKJ45274.1| ATP-independent RNA helicase dbpA [Escherichia coli NE098]
gi|408330753|gb|EKJ46015.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1870]
gi|408343032|gb|EKJ57444.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK523]
gi|408350050|gb|EKJ63954.1| ATP-independent RNA helicase dbpA [Escherichia coli 0.1304]
gi|408553717|gb|EKK30794.1| ATP-independent RNA helicase dbpA [Escherichia coli 5.2239]
gi|408554487|gb|EKK31419.1| ATP-independent RNA helicase dbpA [Escherichia coli 6.0172]
gi|408554596|gb|EKK31524.1| ATP-independent RNA helicase dbpA [Escherichia coli 3.4870]
gi|408576958|gb|EKK52542.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0586]
gi|408584041|gb|EKK59080.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.2524]
gi|408584293|gb|EKK59328.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0833]
gi|408600934|gb|EKK74756.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.0221]
gi|408603200|gb|EKK76862.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0416]
gi|408614992|gb|EKK88232.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0821]
gi|427210097|gb|EKV80043.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.1042]
gi|427211514|gb|EKV81261.1| ATP-independent RNA helicase dbpA [Escherichia coli 89.0511]
gi|427228969|gb|EKV97335.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.2281]
gi|427229406|gb|EKV97742.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.0091]
gi|427230478|gb|EKV98643.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.0039]
gi|427246531|gb|EKW13738.1| ATP-independent RNA helicase dbpA [Escherichia coli 93.0056]
gi|427247805|gb|EKW14855.1| ATP-independent RNA helicase dbpA [Escherichia coli 93.0055]
gi|427248968|gb|EKW15853.1| ATP-independent RNA helicase dbpA [Escherichia coli 94.0618]
gi|427265601|gb|EKW31148.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.0943]
gi|427265978|gb|EKW31482.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.0183]
gi|427267839|gb|EKW33045.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.1288]
gi|427280858|gb|EKW45199.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0428]
gi|427284888|gb|EKW48898.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0427]
gi|427286912|gb|EKW50735.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0939]
gi|427297260|gb|EKW60298.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0932]
gi|427302621|gb|EKW65405.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0003]
gi|427303805|gb|EKW66508.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0107]
gi|427317205|gb|EKW79113.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.1742]
gi|427318804|gb|EKW80659.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0007]
gi|427324573|gb|EKW86043.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0672]
gi|427331340|gb|EKW92573.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0678]
gi|427331421|gb|EKW92652.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0713]
gi|429256517|gb|EKY40686.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0109]
gi|429258092|gb|EKY42004.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0010]
gi|430971952|gb|ELC88951.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE193]
gi|431557479|gb|ELI31190.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE112]
gi|444540806|gb|ELV20437.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0814]
gi|444544507|gb|ELV23562.1| ATP-independent RNA helicase dbpA [Escherichia coli 09BKT078844]
gi|444549750|gb|ELV27975.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0815]
gi|444560910|gb|ELV38043.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0839]
gi|444562948|gb|ELV39985.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0816]
gi|444567420|gb|ELV44185.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0848]
gi|444577289|gb|ELV53428.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1753]
gi|444580904|gb|ELV56789.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1775]
gi|444582865|gb|ELV58631.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1793]
gi|444596627|gb|ELV71680.1| ATP-independent RNA helicase dbpA [Escherichia coli PA11]
gi|444596903|gb|ELV71949.1| ATP-independent RNA helicase dbpA [Escherichia coli ATCC 700728]
gi|444600642|gb|ELV75470.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1805]
gi|444610484|gb|ELV84893.1| ATP-independent RNA helicase dbpA [Escherichia coli PA13]
gi|444610669|gb|ELV85076.1| ATP-independent RNA helicase dbpA [Escherichia coli PA19]
gi|444618497|gb|ELV92575.1| ATP-independent RNA helicase dbpA [Escherichia coli PA2]
gi|444628091|gb|ELW01836.1| ATP-independent RNA helicase dbpA [Escherichia coli PA47]
gi|444633252|gb|ELW06792.1| ATP-independent RNA helicase dbpA [Escherichia coli PA8]
gi|444642861|gb|ELW16033.1| ATP-independent RNA helicase dbpA [Escherichia coli 7.1982]
gi|444645726|gb|ELW18783.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1781]
gi|444648681|gb|ELW21598.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1762]
gi|444658033|gb|ELW30496.1| ATP-independent RNA helicase dbpA [Escherichia coli PA35]
gi|444663841|gb|ELW36050.1| ATP-independent RNA helicase dbpA [Escherichia coli 3.4880]
gi|444671904|gb|ELW43670.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0670]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|417742645|ref|ZP_12391188.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri 2930-71]
gi|332767614|gb|EGJ97807.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri 2930-71]
Length = 430
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
>gi|331682838|ref|ZP_08383457.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
gi|432616406|ref|ZP_19852528.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE75]
gi|450188239|ref|ZP_21890142.1| ATP-dependent RNA helicase DbpA [Escherichia coli SEPT362]
gi|331080469|gb|EGI51648.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
gi|431155306|gb|ELE56063.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE75]
gi|449322962|gb|EMD12938.1| ATP-dependent RNA helicase DbpA [Escherichia coli SEPT362]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPTILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|270262252|ref|ZP_06190524.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
gi|270044128|gb|EFA17220.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
Length = 460
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D+ +AK+G GKTA F + L ++ + L++C TRE
Sbjct: 24 YAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLLDKINVSQVAAQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + L H P IV
Sbjct: 84 LADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSL-VHAPHIV 127
>gi|110641577|ref|YP_669307.1| ATP-dependent RNA helicase DbpA [Escherichia coli 536]
gi|110343169|gb|ABG69406.1| ATP-independent RNA helicase DbpA [Escherichia coli 536]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|423124120|ref|ZP_17111799.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5250]
gi|376401207|gb|EHT13817.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5250]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHVDASLFQTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R +++++NIK+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLANIKILTLCGGQPFGAQRDSLQ-HAPHII 126
>gi|417628513|ref|ZP_12278754.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_MHI813]
gi|345374864|gb|EGX06814.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_MHI813]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|209918588|ref|YP_002292672.1| ATP-dependent RNA helicase DbpA [Escherichia coli SE11]
gi|218553903|ref|YP_002386816.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI1]
gi|293433706|ref|ZP_06662134.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
gi|416344633|ref|ZP_11678488.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
gi|417150595|ref|ZP_11990334.1| ATP-independent RNA helicase DbpA [Escherichia coli 1.2264]
gi|417154540|ref|ZP_11992669.1| ATP-independent RNA helicase DbpA [Escherichia coli 96.0497]
gi|417580763|ref|ZP_12231570.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_B2F1]
gi|417607827|ref|ZP_12258336.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_DG131-3]
gi|417666612|ref|ZP_12316167.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_O31]
gi|422774773|ref|ZP_16828429.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|432480751|ref|ZP_19722710.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE210]
gi|432808961|ref|ZP_20042866.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE101]
gi|432831316|ref|ZP_20064896.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE135]
gi|209911847|dbj|BAG76921.1| ATP-dependent RNA helicase [Escherichia coli SE11]
gi|218360671|emb|CAQ98232.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
IAI1]
gi|291324525|gb|EFE63947.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
gi|320199384|gb|EFW73975.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
gi|323947687|gb|EGB43690.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|345340120|gb|EGW72540.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_B2F1]
gi|345360206|gb|EGW92376.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_DG131-3]
gi|386160089|gb|EIH21900.1| ATP-independent RNA helicase DbpA [Escherichia coli 1.2264]
gi|386167629|gb|EIH34145.1| ATP-independent RNA helicase DbpA [Escherichia coli 96.0497]
gi|397786076|gb|EJK96919.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_O31]
gi|431008625|gb|ELD23425.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE210]
gi|431363852|gb|ELG50398.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE101]
gi|431378011|gb|ELG63003.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE135]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|170681328|ref|YP_001743833.1| ATP-dependent RNA helicase DbpA [Escherichia coli SMS-3-5]
gi|170519046|gb|ACB17224.1| ATP-independent RNA helicase DbpA [Escherichia coli SMS-3-5]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|432850020|ref|ZP_20081001.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE144]
gi|431400912|gb|ELG84270.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE144]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|421783988|ref|ZP_16220431.1| ATP-independent RNA helicase DbpA [Serratia plymuthica A30]
gi|407753851|gb|EKF63991.1| ATP-independent RNA helicase DbpA [Serratia plymuthica A30]
Length = 460
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D+ +AK+G GKTA F + L ++ + L++C TRE
Sbjct: 24 YAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLLDKINVSQVAAQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + L H P IV
Sbjct: 84 LADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSL-VHAPHIV 127
>gi|420325127|ref|ZP_14826899.1| ATP-independent RNA helicase dbpA [Shigella flexneri CCH060]
gi|391254167|gb|EIQ13330.1| ATP-independent RNA helicase dbpA [Shigella flexneri CCH060]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|415827011|ref|ZP_11513928.1| ATP-independent RNA helicase dbpA [Escherichia coli OK1357]
gi|323185489|gb|EFZ70850.1| ATP-independent RNA helicase dbpA [Escherichia coli OK1357]
Length = 437
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 7 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 66
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 67 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 106
>gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
Length = 460
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S + T+ Q + +P+ + G D++ QAK+G GKTA F + LQ+L LV+C
Sbjct: 20 DSLGYESMTAIQAQSLPEILKGNDLIAQAKTGSGKTAAFGIGLLQKLNPRFFGAQALVLC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 123
TRELA Q+ KE + +++M NIK+ + GG PI
Sbjct: 80 PTRELAEQVGKEIRKLARFMPNIKLVMLCGGKPI 113
>gi|218694919|ref|YP_002402586.1| ATP-dependent RNA helicase DbpA [Escherichia coli 55989]
gi|407469079|ref|YP_006784479.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482258|ref|YP_006779407.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2011C-3493]
gi|410482810|ref|YP_006770356.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|417804869|ref|ZP_12451847.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
LB226692]
gi|417832603|ref|ZP_12479069.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
01-09591]
gi|422987333|ref|ZP_16978109.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
C227-11]
gi|422994214|ref|ZP_16984978.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
C236-11]
gi|422999405|ref|ZP_16990161.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
09-7901]
gi|423003006|ref|ZP_16993752.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
04-8351]
gi|423009526|ref|ZP_17000264.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-3677]
gi|423023720|ref|ZP_17014423.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4404]
gi|423028869|ref|ZP_17019562.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4522]
gi|423029736|ref|ZP_17020424.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4623]
gi|423037575|ref|ZP_17028249.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423042689|ref|ZP_17033356.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423049380|ref|ZP_17040037.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052961|ref|ZP_17041769.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059928|ref|ZP_17048724.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C5]
gi|429718785|ref|ZP_19253729.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429724123|ref|ZP_19258994.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429775743|ref|ZP_19307734.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02030]
gi|429777831|ref|ZP_19309800.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782075|ref|ZP_19314002.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02092]
gi|429788578|ref|ZP_19320458.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02093]
gi|429794008|ref|ZP_19325849.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02281]
gi|429797661|ref|ZP_19329465.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02318]
gi|429806081|ref|ZP_19337820.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02913]
gi|429810526|ref|ZP_19342227.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-03439]
gi|429814631|ref|ZP_19346300.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-04080]
gi|429819994|ref|ZP_19351619.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-03943]
gi|429912326|ref|ZP_19378282.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429913210|ref|ZP_19379160.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429918254|ref|ZP_19384189.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429924048|ref|ZP_19389964.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932942|ref|ZP_19398836.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429934546|ref|ZP_19400436.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429940208|ref|ZP_19406082.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429947843|ref|ZP_19413698.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429950482|ref|ZP_19416330.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429953781|ref|ZP_19419617.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432764691|ref|ZP_19999135.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE48]
gi|433091741|ref|ZP_20278027.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE138]
gi|218351651|emb|CAU97366.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
55989]
gi|340734719|gb|EGR63831.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
01-09591]
gi|340740486|gb|EGR74689.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
LB226692]
gi|354865289|gb|EHF25718.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
C236-11]
gi|354870291|gb|EHF30696.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
C227-11]
gi|354872082|gb|EHF32479.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
04-8351]
gi|354875582|gb|EHF35948.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
09-7901]
gi|354876129|gb|EHF36491.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4404]
gi|354881605|gb|EHF41934.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4522]
gi|354882058|gb|EHF42385.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-3677]
gi|354898017|gb|EHF58173.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354900112|gb|EHF60248.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4623]
gi|354902707|gb|EHF62824.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354904189|gb|EHF64283.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354914946|gb|EHF74927.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354920504|gb|EHF80438.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C4]
gi|406777972|gb|AFS57396.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407054555|gb|AFS74606.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2011C-3493]
gi|407065114|gb|AFS86161.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|429349094|gb|EKY85849.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02030]
gi|429358166|gb|EKY94836.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02033-1]
gi|429359570|gb|EKY96235.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02092]
gi|429369314|gb|EKZ05895.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02093]
gi|429372024|gb|EKZ08574.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02281]
gi|429373974|gb|EKZ10514.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02318]
gi|429379699|gb|EKZ16198.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02913]
gi|429384079|gb|EKZ20536.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-03439]
gi|429389368|gb|EKZ25789.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-03943]
gi|429395355|gb|EKZ31722.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429400600|gb|EKZ36915.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-04080]
gi|429405692|gb|EKZ41957.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429416215|gb|EKZ52372.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429416763|gb|EKZ52915.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417387|gb|EKZ53537.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422141|gb|EKZ58262.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429425953|gb|EKZ62042.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429438969|gb|EKZ74961.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429441786|gb|EKZ77754.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429448762|gb|EKZ84671.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429450650|gb|EKZ86544.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429453353|gb|EKZ89221.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9941]
gi|431311777|gb|ELF99925.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE48]
gi|431612357|gb|ELI81605.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE138]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|195938012|ref|ZP_03083394.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4024]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|445497982|ref|ZP_21464837.1| ATP-independent RNA helicase DbpA [Janthinobacterium sp. HH01]
gi|444787977|gb|ELX09525.1| ATP-independent RNA helicase DbpA [Janthinobacterium sp. HH01]
Length = 469
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S ++E T+ Q + +P + G D++ QAK+G GKTA F + L +L V LV+C
Sbjct: 20 DSLGYKEMTTIQAQSLPSVLEGRDLIAQAKTGSGKTAAFGIGILAKLNPAWFAVQALVLC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++ E R ++ N+KV V GG P++ L+ H IV
Sbjct: 80 PTRELADQVANELRRLARATGNVKVLVLTGGSPMRPQIASLE-HGAHIV 127
>gi|421729045|ref|ZP_16168195.1| ATP-dependent RNA helicase DbpA [Klebsiella oxytoca M5al]
gi|410370140|gb|EKP24871.1| ATP-dependent RNA helicase DbpA [Klebsiella oxytoca M5al]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQ ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHVDASLFQTQSLVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R +++++NIK+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLANIKILTLCGGQPFGAQRDSLQ-HAPHII 126
>gi|417728046|ref|ZP_12376770.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-671]
gi|332760197|gb|EGJ90493.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-671]
Length = 435
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 7 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 66
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 67 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 106
>gi|427413381|ref|ZP_18903573.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
gi|425716197|gb|EKU79183.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
Length = 523
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP A+ G+D++ QA++G GKTA F + L+Q++ V VL++ TRE
Sbjct: 23 FEEPTPIQKEAIPVAMSGLDMIGQAQTGTGKTAAFGIPALEQVDEHLRAVQVLILSPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+++E + +++ ++I+ +GG IQ+ L+ NPQI+
Sbjct: 83 LAIQVAEELNKMAQH-THIQALPIYGGQDIQRQFRSLR-KNPQII 125
>gi|336450305|ref|ZP_08620756.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
gi|336282700|gb|EGN75921.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
Length = 464
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q + +P + G D++ QA++G GKTA F L LQ+L V LV+C TRE
Sbjct: 23 YNETTPVQAQALPHVLAGKDVIVQARTGSGKTAAFALGLLQKLNIQRFRVQSLVLCPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLP 122
LA Q+++E + M NIKV GG+P
Sbjct: 83 LADQVAEEIRTIGRGMHNIKVLTLCGGVP 111
>gi|333927747|ref|YP_004501326.1| DEAD/DEAH box helicase [Serratia sp. AS12]
gi|333932701|ref|YP_004506279.1| DEAD/DEAH box helicase domain-containing protein [Serratia
plymuthica AS9]
gi|386329570|ref|YP_006025740.1| DEAD/DEAH box helicase [Serratia sp. AS13]
gi|333474308|gb|AEF46018.1| DEAD/DEAH box helicase domain protein [Serratia plymuthica AS9]
gi|333491807|gb|AEF50969.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS12]
gi|333961903|gb|AEG28676.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS13]
Length = 460
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D+ +AK+G GKTA F + L ++ + L++C TRE
Sbjct: 24 YAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLLDKINVSQVAAQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + L H P IV
Sbjct: 84 LADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSL-VHAPHIV 127
>gi|307309898|ref|ZP_07589548.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|378713279|ref|YP_005278172.1| DEAD/DEAH box helicase [Escherichia coli KO11FL]
gi|386608680|ref|YP_006124166.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
W]
gi|386701698|ref|YP_006165535.1| ATP-dependent RNA helicase DbpA [Escherichia coli KO11FL]
gi|386709137|ref|YP_006172858.1| ATP-dependent RNA helicase DbpA [Escherichia coli W]
gi|306909616|gb|EFN40110.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|315060597|gb|ADT74924.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
W]
gi|323378840|gb|ADX51108.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11FL]
gi|383393225|gb|AFH18183.1| ATP-dependent RNA helicase DbpA [Escherichia coli KO11FL]
gi|383404829|gb|AFH11072.1| ATP-dependent RNA helicase DbpA [Escherichia coli W]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|293414669|ref|ZP_06657318.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
gi|291434727|gb|EFF07700.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|357055243|ref|ZP_09116317.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
gi|355383199|gb|EHG30285.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
Length = 569
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 62/106 (58%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E + Q + IP A+ G D++ QA++G GKTA F L LQ+++ + +V+ TRE
Sbjct: 24 FEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLPLLQKVDPKVKKLQAIVLLPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+++E RF+K+M +KV +GG I K LK IVG
Sbjct: 84 LAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVKQIRSLKDGAQVIVG 129
>gi|416794102|ref|ZP_11882939.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
493-89]
gi|416805750|ref|ZP_11887794.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
2687]
gi|419075292|ref|ZP_13620829.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3F]
gi|420280009|ref|ZP_14782264.1| ATP-independent RNA helicase dbpA [Escherichia coli TW06591]
gi|425266800|ref|ZP_18658545.1| ATP-independent RNA helicase dbpA [Escherichia coli 5412]
gi|209771328|gb|ACI83976.1| ATP-dependent RNA helicase [Escherichia coli]
gi|320642613|gb|EFX11861.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
493-89]
gi|320647966|gb|EFX16674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
2687]
gi|377924692|gb|EHU88638.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3F]
gi|390783634|gb|EIO51232.1| ATP-independent RNA helicase dbpA [Escherichia coli TW06591]
gi|408185965|gb|EKI12087.1| ATP-independent RNA helicase dbpA [Escherichia coli 5412]
Length = 457
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|239818170|ref|YP_002947080.1| ATP-dependent RNA helicase DbpA [Variovorax paradoxus S110]
gi|239804747|gb|ACS21814.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 476
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T+ Q +P A+LG D++ QAK+G GKTA F LA L L + +V+C TRE
Sbjct: 35 YTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLSNLNPRRFAIQAMVLCPTRE 94
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++ E R ++ NIKV GG+ ++ L+ H IV
Sbjct: 95 LADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLE-HGAHIV 138
>gi|417288267|ref|ZP_12075552.1| ATP-independent RNA helicase DbpA [Escherichia coli TW07793]
gi|386247059|gb|EII93232.1| ATP-independent RNA helicase DbpA [Escherichia coli TW07793]
Length = 457
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|322833585|ref|YP_004213612.1| DEAD/DEAH box helicase [Rahnella sp. Y9602]
gi|384258762|ref|YP_005402696.1| ATP-dependent RNA helicase DbpA [Rahnella aquatilis HX2]
gi|321168786|gb|ADW74485.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
gi|380754738|gb|AFE59129.1| ATP-dependent RNA helicase DbpA [Rahnella aquatilis HX2]
Length = 460
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P +LG D+ +AK+G GKTA F + L + + LV+C TRE
Sbjct: 24 YTEMTPIQEASLPAILLGQDVRAKAKTGSGKTAAFGIGLLNSITVSQFVAQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG I E L H P IV
Sbjct: 84 LADQVSKELRRLARFTQNIKILTLCGGQAIGPQLESL-VHPPHIV 127
>gi|416782816|ref|ZP_11878023.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
G5101]
gi|425260700|ref|ZP_18652870.1| ATP-independent RNA helicase dbpA [Escherichia coli EC96038]
gi|445011961|ref|ZP_21328112.1| ATP-independent RNA helicase dbpA [Escherichia coli PA48]
gi|320637247|gb|EFX07073.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
G5101]
gi|408185502|gb|EKI11678.1| ATP-independent RNA helicase dbpA [Escherichia coli EC96038]
gi|444627915|gb|ELW01661.1| ATP-independent RNA helicase dbpA [Escherichia coli PA48]
Length = 457
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|409910746|ref|YP_006889211.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
gi|298504304|gb|ADI83027.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
Length = 460
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D++ +AK+G GKTA F + L +L+ V LV+C TRE
Sbjct: 24 YAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDALSFRVQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+ KE R +++ NIK+ GG+P PQ+ L + + G
Sbjct: 84 LADQVGKELRRLARFTDNIKILTICGGVPF----------GPQLGSLEHGAHVVIGTPGR 133
Query: 154 VMD-VRSGGWWLDLEAL 169
++D +R G LDL AL
Sbjct: 134 LLDHLRRG--SLDLSAL 148
>gi|293409738|ref|ZP_06653314.1| conserved hypothetical protein [Escherichia coli B354]
gi|291470206|gb|EFF12690.1| conserved hypothetical protein [Escherichia coli B354]
Length = 457
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|289550302|ref|YP_003471206.1| cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
lugdunensis M23590]
gi|385783930|ref|YP_005760103.1| putative helicase [Staphylococcus lugdunensis N920143]
gi|418415253|ref|ZP_12988459.1| hypothetical protein HMPREF9308_01624 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418635602|ref|ZP_13197976.1| DEAD/DEAH box helicase [Staphylococcus lugdunensis VCU139]
gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
lugdunensis M23590]
gi|339894186|emb|CCB53451.1| putative helicase [Staphylococcus lugdunensis N920143]
gi|374841707|gb|EHS05164.1| DEAD/DEAH box helicase [Staphylococcus lugdunensis VCU139]
gi|410875260|gb|EKS23185.1| hypothetical protein HMPREF9308_01624 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 504
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E+ F+E T Q + IP A+ G DIL QA++G GKT F + ++++ S V L++
Sbjct: 18 ENMGFKEPTPIQKDSIPYALEGRDILGQAQTGTGKTGAFGIPLIEKV-VNKSGVQSLILA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++++ FS+ N++V FGG+PI + + LK PQIV
Sbjct: 77 PTRELAMQVAEQLREFSRG-QNVQVVTVFGGMPIDRQIKALK-KGPQIV 123
>gi|425304938|ref|ZP_18694691.1| ATP-independent RNA helicase dbpA [Escherichia coli N1]
gi|408230407|gb|EKI53806.1| ATP-independent RNA helicase dbpA [Escherichia coli N1]
Length = 457
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|39995299|ref|NP_951250.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
gi|39982061|gb|AAR33523.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
Length = 460
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D++ +AK+G GKTA F + L +L+ V LV+C TRE
Sbjct: 24 YAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDALSFRVQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q+ KE R +++ NIK+ GG+P PQ+ L + + G
Sbjct: 84 LADQVGKELRRLARFTDNIKILTICGGVPF----------GPQLGSLEHGAHVVIGTPGR 133
Query: 154 VMD-VRSGGWWLDLEAL 169
++D +R G LDL AL
Sbjct: 134 LLDHLRRG--SLDLSAL 148
>gi|383190752|ref|YP_005200880.1| DNA/RNA helicase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371589010|gb|AEX52740.1| DNA/RNA helicase, superfamily II [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 460
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P +LG D+ +AK+G GKTA F + L + + LV+C TRE
Sbjct: 24 YTEMTPIQEASLPAILLGQDVRAKAKTGSGKTAAFGIGLLNSITVSQFVAQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG I E L H P IV
Sbjct: 84 LADQVSKELRRLARFTQNIKILTLCGGQAIGPQLESL-VHPPHIV 127
>gi|335029349|ref|ZP_08522856.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
gi|334268646|gb|EGL87078.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
Length = 524
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E + Q + IP A+ G D++ QA++G GKTA F L TL+++ T D + LV+
Sbjct: 17 EKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIHTEDQTIQALVIA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q +E RF + +KV +GG I+K + LK+ +VG G
Sbjct: 77 PTRELAVQSQEELFRFGRS-KGVKVRSVYGGSSIEKQIKALKSGAHIVVG-------TPG 128
Query: 150 VVVNVMDVRSGGWWLDLEALILSKC 174
+++++ R D+E LIL +
Sbjct: 129 RLLDLIK-RKALKLQDIETLILDEA 152
>gi|300926734|ref|ZP_07142509.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
gi|301326919|ref|ZP_07220211.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
gi|422958492|ref|ZP_16970423.1| ATP-independent RNA helicase dbpA [Escherichia coli H494]
gi|450213797|ref|ZP_21895071.1| ATP-dependent RNA helicase DbpA [Escherichia coli O08]
gi|300417310|gb|EFK00621.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
gi|300846390|gb|EFK74150.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
gi|371596321|gb|EHN85159.1| ATP-independent RNA helicase dbpA [Escherichia coli H494]
gi|449320451|gb|EMD10483.1| ATP-dependent RNA helicase DbpA [Escherichia coli O08]
Length = 457
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|83652036|gb|ABC36100.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
Length = 562
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 60/102 (58%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+ G D++ QAK+G GKTA F LA L +L+ +V LV+C TRELA Q
Sbjct: 129 TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQ 188
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
+++E R ++ N+KV GG P++ + L+ IVG
Sbjct: 189 VAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVG 230
>gi|30062866|ref|NP_837037.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 2457T]
gi|56479969|ref|NP_707684.2| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 301]
gi|110805760|ref|YP_689280.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 5 str. 8401]
gi|384543444|ref|YP_005727507.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|415854174|ref|ZP_11530000.1| ATP-independent RNA helicase dbpA [Shigella flexneri 2a str. 2457T]
gi|417701845|ref|ZP_12350969.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-218]
gi|417722710|ref|ZP_12371531.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-304]
gi|417738376|ref|ZP_12386968.1| ATP-independent RNA helicase dbpA [Shigella flexneri 4343-70]
gi|418255468|ref|ZP_12879846.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri 6603-63]
gi|424838179|ref|ZP_18262816.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 5a str. M90T]
gi|30041114|gb|AAP16844.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
gi|56383520|gb|AAN43391.2| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
gi|110615308|gb|ABF03975.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
gi|281601230|gb|ADA74214.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|313650581|gb|EFS14984.1| ATP-independent RNA helicase dbpA [Shigella flexneri 2a str. 2457T]
gi|332757684|gb|EGJ88015.1| ATP-independent RNA helicase dbpA [Shigella flexneri 4343-70]
gi|333004752|gb|EGK24274.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-218]
gi|333018569|gb|EGK37863.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-304]
gi|383467231|gb|EID62252.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 5a str. M90T]
gi|397898726|gb|EJL15107.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri 6603-63]
Length = 455
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
S4-120]
gi|386007591|ref|YP_005925869.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
gi|404407318|ref|YP_006690033.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2376]
gi|422408998|ref|ZP_16485959.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
FSL F2-208]
gi|423099964|ref|ZP_17087671.1| DEAD/DEAH box helicase [Listeria innocua ATCC 33091]
gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
FSL F2-208]
gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
S4-120]
gi|370793697|gb|EHN61530.1| DEAD/DEAH box helicase [Listeria innocua ATCC 33091]
gi|404241467|emb|CBY62867.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2376]
Length = 518
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP + G D++ QA++G GKTA F L + +++ +NV L++ TRE
Sbjct: 24 FEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S+E + S Y +++V +GG I + LK NPQIV
Sbjct: 84 LAIQVSEELYKLS-YDKHVRVLAVYGGSDISRQIRSLK-KNPQIV 126
>gi|226357411|ref|YP_002787150.1| ATP-independent RNA helicase [Deinococcus deserti VCD115]
gi|226319401|gb|ACO47396.1| putative ATP-independent RNA helicase [Deinococcus deserti VCD115]
Length = 469
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+RE T+ Q +P + G D+L QA++G GKT F + L +L+ V LV+C TRE
Sbjct: 24 YREMTTIQQRSLPHVLKGRDLLAQAETGSGKTVAFGIGILHRLDPARLKVQGLVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQ 124
LA Q++ E R ++ NIKV GG+P++
Sbjct: 84 LADQVANELRRLARGEGNIKVLTLTGGVPLR 114
>gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
Length = 458
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S + E T Q + +P + G D++ Q K+G GKTA F L L L + V LV+C
Sbjct: 19 DSLGYTEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVSRFRVQTLVLC 78
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q++KE ++ + NIKV GG+P+ PQI L + L G
Sbjct: 79 PTRELADQVAKEIRTLARGIHNIKVLTLCGGMPM----------GPQIGSLEHGAHILVG 128
Query: 150 VVVNVMDVRSGGW--WLDLEALILSKC 174
++D S G +L L+L +
Sbjct: 129 TPGRILDHMSKGRISLKELNTLVLDEA 155
>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
str. F2365]
gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
H7858]
gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
gi|404280417|ref|YP_006681315.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2755]
gi|404286275|ref|YP_006692861.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749220|ref|YP_006672686.1| ATP-dependent RNA helicase [Listeria monocytogenes ATCC 19117]
gi|405752085|ref|YP_006675550.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2378]
gi|405754943|ref|YP_006678407.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2540]
gi|406703641|ref|YP_006753995.1| ATP-dependent RNA helicase [Listeria monocytogenes L312]
gi|424713744|ref|YP_007014459.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
serotype 4b str. LL195]
gi|424822593|ref|ZP_18247606.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
str. F2365]
gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
H7858]
gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
gi|404218420|emb|CBY69784.1| ATP-dependent RNA helicase [Listeria monocytogenes ATCC 19117]
gi|404221285|emb|CBY72648.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2378]
gi|404224143|emb|CBY75505.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2540]
gi|404227052|emb|CBY48457.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2755]
gi|404245204|emb|CBY03429.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406360671|emb|CBY66944.1| ATP-dependent RNA helicase [Listeria monocytogenes L312]
gi|424012928|emb|CCO63468.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
serotype 4b str. LL195]
Length = 519
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP + G D++ QA++G GKTA F L + +++ +NV L++ TRE
Sbjct: 24 FEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S+E + S Y +++V +GG I + LK NPQIV
Sbjct: 84 LAIQVSEELYKLS-YDKHVRVLAVYGGSDISRQIRSLK-KNPQIV 126
>gi|386822547|ref|ZP_10109753.1| ATP-dependent RNA helicase DbpA [Serratia plymuthica PRI-2C]
gi|386380536|gb|EIJ21267.1| ATP-dependent RNA helicase DbpA [Serratia plymuthica PRI-2C]
Length = 460
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ E T Q +P + G D+ +AK+G GKTA F + L ++ + L++C TRE
Sbjct: 24 YAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLLDKINVSQVATQALILCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+SKE R +++ NIK+ GG P+ + L H P IV
Sbjct: 84 LADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSL-VHAPHIV 127
>gi|398807613|ref|ZP_10566489.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398089148|gb|EJL79676.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 474
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + T+ Q +P A+LG D++ QAK+G GKTA F LA L L + +V+C TRE
Sbjct: 35 YTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLSNLNPRRFAIQAMVLCPTRE 94
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q++ E R ++ NIKV GG+ ++ L+ H IV
Sbjct: 95 LADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLE-HGAHIV 138
>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
gi|217965039|ref|YP_002350717.1| DEAD/DEAH box helicase [Listeria monocytogenes HCC23]
gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
gi|386026184|ref|YP_005946960.1| putative ATP-dependent RNA helicase [Listeria monocytogenes M7]
gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Listeria monocytogenes HCC23]
gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
gi|336022765|gb|AEH91902.1| putative ATP-dependent RNA helicase [Listeria monocytogenes M7]
Length = 516
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP + G D++ QA++G GKTA F L + +++ +NV L++ TRE
Sbjct: 22 FEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S+E + S Y +++V +GG I + LK NPQIV
Sbjct: 82 LAIQVSEELYKLS-YDKHVRVLAVYGGSDISRQIRSLK-KNPQIV 124
>gi|392967949|ref|ZP_10333365.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
gi|387842311|emb|CCH55419.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
Length = 663
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 59/98 (60%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q E IP + G D++ QA++G GKTA F + L+ ++T+ +V VLV+C TRE
Sbjct: 70 FVSPSPIQAEAIPPILAGRDVIGQAQTGTGKTAAFGIPALEMIDTSVRSVQVLVLCPTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131
LA Q++ E + +KY ++V +GG I++ LK
Sbjct: 130 LALQVADEIRKLAKYKRGLRVEAIYGGDSIERQIRSLK 167
>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386731620|ref|YP_006205116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 07PF0776]
gi|417314932|ref|ZP_12101623.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1816]
gi|417317100|ref|ZP_12103725.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1-220]
gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1816]
gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1-220]
gi|384390378|gb|AFH79448.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 07PF0776]
Length = 517
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q + IP + G D++ QA++G GKTA F L + +++ +NV L++ TRE
Sbjct: 22 FEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRE 81
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q+S+E + S Y +++V +GG I + LK NPQIV
Sbjct: 82 LAIQVSEELYKLS-YDKHVRVLAVYGGSDISRQIRSLK-KNPQIV 124
>gi|335428790|ref|ZP_08555700.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|335430826|ref|ZP_08557712.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334887366|gb|EGM25698.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334891731|gb|EGM29977.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
Length = 528
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Query: 20 NRREKEDRIGES---QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL 76
N E D+I +S F E T Q E IP + G DI+ QA++G GKTA F + +++L
Sbjct: 6 NELEISDQIKQSIAEMGFVEPTPIQAEAIPYILEGNDIIGQAQTGTGKTAAFSIPLIEKL 65
Query: 77 ETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQ 136
+ + ++ +++C TRELA Q++ E + +KY+ +KV +GG + LK PQ
Sbjct: 66 DLNNRSIQGIILCPTRELAIQVTDEIRKLTKYVEGVKVVPIYGGQSYNIQLKALK-RKPQ 124
Query: 137 IV 138
IV
Sbjct: 125 IV 126
>gi|385799993|ref|YP_005836397.1| DEAD/DEAH box helicase [Halanaerobium praevalens DSM 2228]
gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM
2228]
Length = 529
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 62/110 (56%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E F E T Q IP + G DI+ QA++G GKTA F + L+++++ + N +++C
Sbjct: 20 EEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLLEEMDSENKNPQAIILC 79
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
TRELA Q+S+E +R +KY I +GG I + + LK ++G
Sbjct: 80 PTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQIKALKKGVQIVIG 129
>gi|339451980|ref|ZP_08655350.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc lactis KCTC 3528]
Length = 513
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 15/153 (9%)
Query: 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95
E T Q + IP + G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA
Sbjct: 23 EATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILENIDLDNKNIQALIVSPTRELA 82
Query: 96 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI-VGL-------VNYET-N 146
Q + E ++ Y ++ V V FGG I++ + LK+H PQI VG +N +T
Sbjct: 83 IQTADELKKLG-YDKHVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVK 140
Query: 147 LSGVVVNVMD----VRSGGWWLDLEALILSKCA 175
+ V V+D + + G+ D+EA+I + A
Sbjct: 141 IDQVKTLVLDEADEMLNMGFLDDIEAIIKNTPA 173
>gi|347524843|ref|YP_004831591.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
gi|345283802|gb|AEN77655.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
Length = 497
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 81/150 (54%), Gaps = 15/150 (10%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q IP + G+D++ QA++G GKTA F L LQ ++ + ++ +V+ TRE
Sbjct: 21 FEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPILQHVDVKEEHIQAIVISPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI-VGL-------VNYET 145
LA Q +E R K KV V +GG I++ + LK H PQI VG +N +T
Sbjct: 81 LAIQTQEELYRLGKD-KRAKVQVVYGGADIRRQIKLLK-HVPQILVGTPGRLLDHINRKT 138
Query: 146 -NLSGVVVNVMD----VRSGGWWLDLEALI 170
+LS V V+D + G+ D+EA+I
Sbjct: 139 VDLSHVKTLVLDEADEMLDMGFLEDIEAII 168
>gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417956599|ref|ZP_12599563.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342809439|gb|EGU44558.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 458
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+S + E T Q + +P + G D++ Q K+G GKTA F L L L V LV+C
Sbjct: 19 DSLGYTEMTPIQQQALPMVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVKRFRVQTLVLC 78
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSG 149
TRELA Q++KE ++ + NIKV GG+P+ PQI L + L G
Sbjct: 79 PTRELADQVAKEIRTLARGIHNIKVLTLCGGMPM----------GPQIGSLEHGAHILVG 128
Query: 150 VVVNVMDVRSGGWW-LD-LEALILSKC 174
++D S G LD L L+L +
Sbjct: 129 TPGRILDHMSKGRISLDELNTLVLDEA 155
>gi|398803578|ref|ZP_10562599.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398096205|gb|EJL86532.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 476
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P A+LG D++ QAK+G GKTA F + L L V +V+C TRELA Q
Sbjct: 39 TPIQAASLPVALLGKDLIAQAKTGSGKTAAFAIPLLANLNPRRFAVQAMVLCPTRELADQ 98
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
++ E R ++ N KV V GG+P++ L+ +VG
Sbjct: 99 VATEIRRLARAEENTKVVVLCGGVPLRNQSASLENGAHIVVG 140
>gi|417204782|ref|ZP_12018964.1| ATP-independent RNA helicase DbpA [Escherichia coli JB1-95]
gi|419202889|ref|ZP_13746095.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8B]
gi|378052985|gb|EHW15286.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8B]
gi|386198272|gb|EIH92457.1| ATP-independent RNA helicase DbpA [Escherichia coli JB1-95]
Length = 457
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAVLPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|187731861|ref|YP_001880183.1| ATP-dependent RNA helicase DbpA [Shigella boydii CDC 3083-94]
gi|187428853|gb|ACD08127.1| ATP-independent RNA helicase DbpA [Shigella boydii CDC 3083-94]
Length = 457
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAATLPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 463
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ T Q + +P + G D++ Q K+G GKTA F L LQ+L +V LV+C TRE
Sbjct: 24 YAHMTPIQAQSLPHILAGRDVIGQGKTGSGKTAAFGLGLLQKLNVKRFHVQALVLCPTRE 83
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LA Q++KE + ++ + NIKV GG+P PQ+ L + + G
Sbjct: 84 LADQVAKEIRKLARTIHNIKVLTLCGGMPF----------GPQLGSLEHGAHIIVGTPGR 133
Query: 154 VMD-VRSGGWWLD-LEALILSKC 174
+ + VR G LD L L+L +
Sbjct: 134 IEEHVRKGALKLDNLTLLVLDEA 156
>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|385821240|ref|YP_005857627.1| DEAD/DEAH box helicase [Lactobacillus casei LC2W]
gi|385824432|ref|YP_005860774.1| DEAD/DEAH box helicase [Lactobacillus casei BD-II]
gi|409998335|ref|YP_006752736.1| DEAD/DEAH box helicase [Lactobacillus casei W56]
gi|417981730|ref|ZP_12622394.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|417984551|ref|ZP_12625171.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|417987806|ref|ZP_12628359.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|417997288|ref|ZP_12637547.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|418000194|ref|ZP_12640390.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|418003339|ref|ZP_12643426.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|418006207|ref|ZP_12646168.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|418008368|ref|ZP_12648235.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|418011933|ref|ZP_12651680.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|418013012|ref|ZP_12652674.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
gi|406359347|emb|CCK23617.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus casei W56]
gi|410521133|gb|EKP96098.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|410522198|gb|EKP97147.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|410525109|gb|EKQ00016.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|410533048|gb|EKQ07736.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|410537114|gb|EKQ11693.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|410542456|gb|EKQ16903.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|410544369|gb|EKQ18698.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|410547046|gb|EKQ21289.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|410551341|gb|EKQ25407.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|410556209|gb|EKQ30122.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
Length = 502
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F E T Q E IP + G D++ QA++G GKTA F L LQ ++ D ++ LV+ TRE
Sbjct: 21 FEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQNIDKADRSIQALVISPTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA Q +E R + IKV +GG I++ L H PQIV
Sbjct: 81 LAIQTQEELYRLGQD-KKIKVQAVYGGADIRRQIRQLSEH-PQIV 123
>gi|425300142|ref|ZP_18690115.1| ATP-independent RNA helicase DbpA [Escherichia coli 07798]
gi|408218395|gb|EKI42623.1| ATP-independent RNA helicase DbpA [Escherichia coli 07798]
Length = 432
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDVSLFQTQGLVLCPTRELADQ 61
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++SN K+ GG P + L+ H P I+
Sbjct: 62 VAVELRRLARFLSNTKILTLCGGQPFGMQRDSLQ-HAPHII 101
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,551,946,455
Number of Sequences: 23463169
Number of extensions: 97299361
Number of successful extensions: 243559
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13529
Number of HSP's successfully gapped in prelim test: 8719
Number of HSP's that attempted gapping in prelim test: 221967
Number of HSP's gapped (non-prelim): 22911
length of query: 175
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 43
effective length of database: 9,262,057,059
effective search space: 398268453537
effective search space used: 398268453537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)