BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1539
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E
PE=1 SV=1
Length = 424
Score = 173 bits (438), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTR 92
F + QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTR
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTR 120
Query: 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
ELAFQISKEYERFSKYM +KV VFFGG+ IQKDEE LK+ P IV
Sbjct: 121 ELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIV 166
>sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus norvegicus GN=Ddx39b PE=1
SV=3
Length = 428
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus musculus GN=Ddx39b PE=1 SV=1
Length = 428
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo abelii GN=DDX39B PE=2 SV=1
Length = 428
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa GN=DDX39B PE=2 SV=2
Length = 428
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan troglodytes GN=DDX39B PE=3
SV=1
Length = 428
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca mulatta GN=DDX39B PE=3
SV=1
Length = 428
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo sapiens GN=DDX39B PE=1 SV=1
Length = 428
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>sp|Q5WR10|DX39B_CANFA Spliceosome RNA helicase DDX39B OS=Canis familiaris GN=DDX39B PE=3
SV=1
Length = 428
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos taurus GN=DDX39B PE=2 SV=1
Length = 428
Score = 169 bits (428), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIV 169
>sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus gallus GN=DDX39B PE=2
SV=1
Length = 428
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 124
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL ++KDEE LK + P IV
Sbjct: 125 LAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIV 169
>sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo sapiens GN=DDX39A PE=1
SV=2
Length = 427
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
>sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus musculus GN=Ddx39a PE=2
SV=1
Length = 427
Score = 167 bits (423), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus norvegicus GN=Ddx39a
PE=2 SV=1
Length = 427
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 88/105 (83%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRE
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRE 123
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +V
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVV 168
>sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog OS=Caenorhabditis elegans
GN=hel-1 PE=2 SV=1
Length = 425
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 9/142 (6%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFV+ TLQQLE D V V+ MCHTRE
Sbjct: 61 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRE 120
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
LAFQISKEYERFSKY+ +KV VFFGG+ I+KDEE L P IV G ++
Sbjct: 121 LAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIV------VGTPGRMLA 174
Query: 154 VMDVRSGGWWLD-LEALILSKC 174
+ RSG LD ++ +L +C
Sbjct: 175 L--ARSGKLKLDKVKYFVLDEC 194
>sp|A4RBS3|SUB2_MAGO7 ATP-dependent RNA helicase SUB2 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=SUB2 PE=3 SV=1
Length = 436
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/109 (66%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 72 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 131
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVFFGG PIQKD E LK TH IVG
Sbjct: 132 LAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKETHPHIIVG 180
>sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=SUB2 PE=3 SV=1
Length = 434
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 70 FEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRE 129
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LAFQI EY RFSKYM +IK GVF+GG PIQKD E LK TH IVG
Sbjct: 130 LAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVG 178
>sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SUB2 PE=3 SV=1
Length = 442
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRE
Sbjct: 79 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI E+ RFSK+M+N++ GVF+GG PI D+E L K P IV
Sbjct: 139 LAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIV 185
>sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SUB2 PE=3 SV=1
Length = 442
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q ECIPQA+LG D+LCQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRE
Sbjct: 79 FEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI E+ RFSK+M+N++ GVF+GG PI D+E L K P IV
Sbjct: 139 LAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIV 185
>sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp.
japonica GN=Os01g0549700 PE=2 SV=2
Length = 432
Score = 142 bits (359), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRE
Sbjct: 71 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+ +KV VF+GG+ I+K ++ LK P IV
Sbjct: 131 LAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIV 175
>sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp.
japonica GN=Os01g0550000 PE=2 SV=1
Length = 432
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 81/105 (77%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRE
Sbjct: 71 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ERFSKY+ +KV VF+GG+ I+K ++ LK P IV
Sbjct: 131 LAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIV 175
>sp|A7EIX7|SUB2_SCLS1 ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=sub2 PE=3 SV=1
Length = 444
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQA+LG D+LCQAKSG+GKTAVFVL TLQQ+E VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVG 139
LA+QI EY+RF +M ++K+GVF+GG+PI KD E LK TH IVG
Sbjct: 139 LAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETHPHIIVG 187
>sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana
GN=RH56 PE=2 SV=2
Length = 427
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 170
>sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana
GN=RH15 PE=2 SV=3
Length = 427
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRE
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRE 125
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIV 170
>sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=uap56 PE=1 SV=3
Length = 434
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSGMGKTAVFVL+TLQQ+E D V VLV+CHTRE
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LAFQI EY RFSKY+ +++ VF+GG+ I++D E K+ +P IV
Sbjct: 131 LAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
>sp|A5DDN0|SUB2_PICGU ATP-dependent RNA helicase SUB2 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=SUB2 PE=3 SV=3
Length = 432
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 68 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRE 127
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG+PI KD E LK + P IV
Sbjct: 128 LAYQIRNEYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIV 174
>sp|A3LST5|SUB2_PICST ATP-dependent RNA helicase SUB2 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=SUB2 PE=3 SV=1
Length = 433
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 69 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI++D E LK+ + P IV
Sbjct: 129 LAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKDTCPHIV 175
>sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SUB2 PE=3 SV=2
Length = 435
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRE 130
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI +D E LK + P IV
Sbjct: 131 LAYQIRNEYARFSKYMPDVKTEVFYGGTPITRDLEKLKNKDTCPHIV 177
>sp|A5E3W5|SUB2_LODEL ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=SUB2 PE=3 SV=1
Length = 433
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRE
Sbjct: 69 FEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRE 128
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG P+++D E LK + P IV
Sbjct: 129 LAYQIRNEYARFSKYMPDVKTEVFYGGTPVKRDIEKLKNKDTCPHIV 175
>sp|Q2U6P7|SUB2_ASPOR ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=sub2 PE=3 SV=1
Length = 441
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIV 184
>sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=sub2 PE=3 SV=1
Length = 441
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIV 184
>sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2
PE=3 SV=1
Length = 441
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIV 184
>sp|A2R0B5|SUB2_ASPNC ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=sub2 PE=3 SV=1
Length = 440
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 77 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 137 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIV 183
>sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sub2
PE=3 SV=1
Length = 448
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 78 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIV 184
>sp|Q5ASK8|SUB2_EMENI ATP-dependent RNA helicase sub2 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sub2
PE=3 SV=2
Length = 434
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E L + P I+
Sbjct: 139 LAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNII 185
>sp|Q6CH90|SUB2_YARLI ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=SUB2 PE=3 SV=2
Length = 441
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIPQ++LG D+LCQAK+G+GKTAVFVL+TLQQLE V+V+CHTRE
Sbjct: 77 FEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKY+ ++K VF+GG PIQKD E + K +P ++
Sbjct: 137 LAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHVI 183
>sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=SUB2 PE=3 SV=2
Length = 442
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 79 FEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE 138
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG P+QKD E L + + P IV
Sbjct: 139 LAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIV 185
>sp|Q1DI07|SUB2_COCIM ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis (strain RS)
GN=SUB2 PE=3 SV=1
Length = 443
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 80 FEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRE 139
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKY+ ++K VF+GG P+QKD E L + + P IV
Sbjct: 140 LAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIV 186
>sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=sub2 PE=3 SV=1
Length = 438
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 74/104 (71%), Gaps = 5/104 (4%)
Query: 40 FQHE---CIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 96
F+H CIP A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+
Sbjct: 78 FEHPSEVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAY 137
Query: 97 QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
QI EY RFSKY+ ++K VF+GG PIQKD E L K P IV
Sbjct: 138 QIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIV 181
>sp|Q07478|SUB2_YEAST ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SUB2 PE=1 SV=1
Length = 446
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 82 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARE 141
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK + P IV
Sbjct: 142 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188
>sp|A6ZXP4|SUB2_YEAS7 ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain
YJM789) GN=SUB2 PE=3 SV=1
Length = 446
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 82 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARE 141
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK + P IV
Sbjct: 142 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188
>sp|Q0TXZ2|SUB2_PHANO ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=SUB2 PE=3 SV=1
Length = 438
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 80/111 (72%), Gaps = 5/111 (4%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL-ETTDSNVY-VLVMCHT 91
F + Q IPQA+LG D+LCQAKSG+GKTAVFVLATLQQ+ E + V +LVMCHT
Sbjct: 72 FEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHT 131
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNPQIVG 139
RELA+QI EY RF+K++ ++KVGVF+GG P+ KD E L TH IVG
Sbjct: 132 RELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHIIVG 182
>sp|A7TLA0|SUB21_VANPO ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1
Length = 441
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 77 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 136
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK P IV
Sbjct: 137 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKETAPHIV 183
>sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1
Length = 442
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 78 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 137
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG PI KD E LK P IV
Sbjct: 138 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIV 184
>sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SUB2 PE=3 SV=1
Length = 439
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 75 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARE 134
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM +++ VF+GG PI KD E LK + P IV
Sbjct: 135 LAYQIRNEYLRFSKYMPDVRTAVFYGGTPIAKDAELLKNKDTAPHIV 181
>sp|Q759L6|SUB2_ASHGO ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SUB2
PE=3 SV=1
Length = 438
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 74 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARE 133
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIV 138
LA+QI EY RFSKYM ++K VF+GG +KD E LK + P IV
Sbjct: 134 LAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNKDTAPHIV 180
>sp|Q6CM95|SUB2_KLULA ATP-dependent RNA helicase SUB2 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SUB2 PE=3 SV=1
Length = 437
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 72/107 (67%), Gaps = 2/107 (1%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + Q IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RE
Sbjct: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARE 132
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIV 138
LA+QI EY RFSKYM ++K VF+GG + D + L K P I+
Sbjct: 133 LAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
ES F E T Q E IP A+ G DI+ QA++G GKTA F L L +++T +V +V+
Sbjct: 18 ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIA 77
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VN 142
TRELA Q+ +E + K+ +++ +GG I + LK H IVG +N
Sbjct: 78 PTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 136
Query: 143 YET----NLSGVVVNVMD-VRSGGWWLDLEALI 170
+T N+ VV++ D + + G+ D+EA++
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL 169
>sp|P21693|DBPA_ECOLI ATP-independent RNA helicase DbpA OS=Escherichia coli (strain K12)
GN=dbpA PE=1 SV=2
Length = 457
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97
T Q +P + G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 86
Query: 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
++ E R ++++ N K+ GG P + L+ H P I+
Sbjct: 87 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHII 126
>sp|Q4L7W0|Y956_STAHJ Probable DEAD-box ATP-dependent RNA helicase SH0956
OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH0956 PE=3 SV=1
Length = 503
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
E+ F+E T Q + IP + G DIL QA++G GKT F + ++++ S V L++
Sbjct: 18 EAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKV-VGQSGVQALILA 76
Query: 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
TRELA Q++++ FS+ N++V FGG+PI + + LK PQIV
Sbjct: 77 PTRELAMQVAEQLREFSRG-QNVQVVTVFGGMPIDRQIKALK-RGPQIV 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,222,726
Number of Sequences: 539616
Number of extensions: 2354976
Number of successful extensions: 6786
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 5520
Number of HSP's gapped (non-prelim): 1141
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)