Query psy1539
Match_columns 175
No_of_seqs 206 out of 1430
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 19:45:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330|consensus 100.0 4.7E-37 1E-41 241.0 11.0 163 10-173 57-232 (476)
2 KOG0331|consensus 100.0 1.9E-36 4.1E-41 248.5 14.5 159 14-173 91-267 (519)
3 COG0513 SrmB Superfamily II DN 100.0 1.4E-34 3E-39 242.6 19.0 159 14-172 29-201 (513)
4 KOG0348|consensus 100.0 6.8E-35 1.5E-39 236.4 13.2 158 14-171 136-313 (708)
5 KOG0338|consensus 100.0 5.5E-35 1.2E-39 235.9 11.1 159 13-172 180-354 (691)
6 PRK04837 ATP-dependent RNA hel 100.0 1.2E-33 2.7E-38 232.5 18.9 160 12-172 6-184 (423)
7 PTZ00110 helicase; Provisional 100.0 1.8E-33 4E-38 237.5 18.2 166 6-172 122-304 (545)
8 KOG0345|consensus 100.0 2.1E-33 4.5E-38 224.9 16.1 158 15-172 5-184 (567)
9 PLN00206 DEAD-box ATP-dependen 100.0 3.8E-33 8.3E-38 234.6 18.0 166 6-172 113-297 (518)
10 PRK11776 ATP-dependent RNA hel 100.0 6E-33 1.3E-37 230.6 18.6 159 14-172 4-174 (460)
11 PRK11634 ATP-dependent RNA hel 100.0 1.2E-32 2.5E-37 235.3 18.9 161 12-172 4-176 (629)
12 PRK10590 ATP-dependent RNA hel 100.0 6.2E-32 1.3E-36 224.3 18.5 157 15-172 2-176 (456)
13 PRK04537 ATP-dependent RNA hel 100.0 7.7E-32 1.7E-36 228.6 18.6 157 15-172 10-186 (572)
14 KOG0342|consensus 100.0 2.4E-32 5.1E-37 219.7 12.5 159 13-171 81-256 (543)
15 PRK11192 ATP-dependent RNA hel 100.0 6.3E-31 1.4E-35 217.1 19.0 156 15-171 2-173 (434)
16 KOG0335|consensus 100.0 2.8E-32 6.1E-37 221.1 10.5 165 7-172 67-254 (482)
17 KOG0340|consensus 100.0 1.1E-31 2.3E-36 208.9 13.1 161 10-171 3-179 (442)
18 KOG0343|consensus 100.0 3.6E-32 7.7E-37 221.5 9.9 160 11-172 66-242 (758)
19 KOG0346|consensus 100.0 5.9E-32 1.3E-36 215.2 10.7 160 12-171 17-196 (569)
20 KOG0333|consensus 100.0 1.3E-31 2.8E-36 217.0 11.5 169 3-172 234-423 (673)
21 PRK01297 ATP-dependent RNA hel 100.0 2.8E-30 6E-35 215.5 18.8 160 12-172 85-264 (475)
22 KOG0328|consensus 100.0 1.4E-31 3.1E-36 203.2 7.5 160 11-171 24-195 (400)
23 PTZ00424 helicase 45; Provisio 100.0 9.2E-30 2E-34 208.0 18.6 161 11-172 25-197 (401)
24 KOG0339|consensus 100.0 1E-30 2.3E-35 211.3 12.3 164 7-171 216-396 (731)
25 KOG0334|consensus 100.0 4.2E-30 9E-35 221.4 12.7 167 6-173 357-543 (997)
26 KOG0347|consensus 100.0 1.9E-30 4.1E-35 211.3 10.0 164 7-171 174-366 (731)
27 KOG0336|consensus 100.0 3.9E-30 8.4E-35 203.8 9.7 162 10-173 215-395 (629)
28 KOG0341|consensus 100.0 1E-30 2.2E-35 205.9 3.0 165 6-170 162-351 (610)
29 cd00268 DEADc DEAD-box helicas 100.0 8.1E-28 1.8E-32 179.6 18.4 155 16-171 1-169 (203)
30 KOG0326|consensus 100.0 5.1E-30 1.1E-34 197.6 4.4 157 13-170 84-252 (459)
31 KOG0337|consensus 100.0 9.3E-29 2E-33 196.1 10.4 158 14-172 21-191 (529)
32 TIGR03817 DECH_helic helicase/ 100.0 1.5E-27 3.1E-32 207.4 18.1 149 20-172 20-183 (742)
33 KOG0329|consensus 100.0 2.5E-28 5.4E-33 183.5 8.9 159 13-171 41-212 (387)
34 KOG0327|consensus 99.9 6.6E-27 1.4E-31 183.7 9.2 162 10-172 22-196 (397)
35 KOG4284|consensus 99.9 4.4E-27 9.6E-32 194.8 7.2 162 10-172 21-195 (980)
36 KOG0350|consensus 99.9 1.3E-25 2.8E-30 181.4 10.9 146 14-160 127-306 (620)
37 PRK02362 ski2-like helicase; P 99.9 7.7E-25 1.7E-29 191.0 16.0 149 15-171 2-163 (737)
38 PRK00254 ski2-like helicase; P 99.9 2.9E-24 6.3E-29 187.0 16.8 151 15-172 2-165 (720)
39 COG1201 Lhr Lhr-like helicases 99.9 4.1E-24 9E-29 184.2 13.1 137 20-158 7-158 (814)
40 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.3E-23 2.9E-28 181.9 15.7 139 32-172 12-196 (844)
41 PRK13767 ATP-dependent helicas 99.9 2.2E-23 4.7E-28 184.3 16.4 139 21-160 18-183 (876)
42 COG1205 Distinct helicase fami 99.9 3.2E-23 6.9E-28 181.7 16.2 150 22-172 56-221 (851)
43 PF00270 DEAD: DEAD/DEAH box h 99.9 4.3E-23 9.4E-28 149.4 14.1 133 38-172 1-146 (169)
44 KOG0332|consensus 99.9 3.2E-24 6.9E-29 168.4 6.6 158 11-172 87-260 (477)
45 PRK01172 ski2-like helicase; P 99.9 1.1E-22 2.4E-27 176.2 15.9 148 15-171 2-161 (674)
46 KOG0344|consensus 99.9 6.7E-23 1.5E-27 168.3 7.7 160 10-170 128-314 (593)
47 TIGR00580 mfd transcription-re 99.9 1.6E-21 3.5E-26 172.2 16.9 145 20-170 435-593 (926)
48 PRK12899 secA preprotein trans 99.9 9.9E-22 2.1E-26 170.4 15.1 144 16-165 64-231 (970)
49 PRK10917 ATP-dependent DNA hel 99.9 2E-21 4.3E-26 168.2 16.9 133 23-160 248-394 (681)
50 TIGR00643 recG ATP-dependent D 99.9 1.6E-21 3.4E-26 167.7 16.1 132 24-160 224-368 (630)
51 PRK09401 reverse gyrase; Revie 99.9 1.7E-21 3.7E-26 175.5 16.5 135 32-171 77-239 (1176)
52 PRK14701 reverse gyrase; Provi 99.9 6.5E-21 1.4E-25 175.2 17.6 141 24-168 67-234 (1638)
53 TIGR01054 rgy reverse gyrase. 99.9 7E-21 1.5E-25 171.6 15.4 143 24-170 66-236 (1171)
54 TIGR00614 recQ_fam ATP-depende 99.8 2E-20 4.3E-25 156.1 14.2 129 30-169 5-153 (470)
55 PRK10689 transcription-repair 99.8 5.7E-20 1.2E-24 165.4 16.3 132 24-160 589-733 (1147)
56 TIGR01389 recQ ATP-dependent D 99.8 1.9E-19 4.2E-24 154.0 15.3 127 32-169 9-153 (591)
57 PLN03137 ATP-dependent DNA hel 99.8 2.4E-19 5.3E-24 158.4 15.9 141 18-169 441-607 (1195)
58 PRK11057 ATP-dependent DNA hel 99.8 3.5E-19 7.6E-24 152.6 16.0 138 21-169 9-165 (607)
59 PRK12898 secA preprotein trans 99.8 1E-18 2.3E-23 148.6 13.6 99 32-139 100-198 (656)
60 COG1204 Superfamily II helicas 99.8 2E-18 4.3E-23 150.1 12.7 135 18-159 13-156 (766)
61 PHA02558 uvsW UvsW helicase; P 99.8 9.2E-18 2E-22 141.1 13.7 129 34-172 112-245 (501)
62 PRK05580 primosome assembly pr 99.8 2.9E-17 6.4E-22 142.1 16.1 121 36-163 144-273 (679)
63 COG1202 Superfamily II helicas 99.7 5E-18 1.1E-22 140.0 9.2 145 11-158 191-347 (830)
64 KOG0349|consensus 99.7 2.4E-18 5.2E-23 138.1 5.5 87 83-169 287-387 (725)
65 PRK09200 preprotein translocas 99.7 3.9E-17 8.5E-22 141.6 13.1 125 33-165 76-215 (790)
66 TIGR00963 secA preprotein tran 99.7 4.4E-17 9.6E-22 139.8 12.4 128 33-169 54-196 (745)
67 KOG0952|consensus 99.7 2.9E-17 6.3E-22 142.5 11.0 124 32-159 106-248 (1230)
68 smart00487 DEXDc DEAD-like hel 99.7 5.2E-16 1.1E-20 113.7 15.2 139 31-171 3-155 (201)
69 PHA02653 RNA helicase NPH-II; 99.7 1.6E-16 3.5E-21 136.6 12.3 122 38-160 166-302 (675)
70 PRK09751 putative ATP-dependen 99.7 1.4E-16 3E-21 145.3 12.5 104 56-159 1-134 (1490)
71 TIGR03714 secA2 accessory Sec 99.7 3.2E-16 6.8E-21 135.2 12.3 123 36-164 70-210 (762)
72 PRK13766 Hef nuclease; Provisi 99.7 2.6E-15 5.7E-20 132.1 14.6 122 34-160 13-142 (773)
73 COG1111 MPH1 ERCC4-like helica 99.6 2.7E-15 5.9E-20 122.4 12.8 136 34-174 13-161 (542)
74 PRK13104 secA preprotein trans 99.6 2.2E-15 4.7E-20 131.3 11.6 122 36-165 82-218 (896)
75 COG1200 RecG RecG-like helicas 99.6 7.3E-15 1.6E-19 123.9 13.3 136 19-159 245-394 (677)
76 KOG0354|consensus 99.6 1.2E-14 2.5E-19 124.1 12.1 134 21-159 47-189 (746)
77 TIGR03158 cas3_cyano CRISPR-as 99.6 1.5E-14 3.3E-19 117.0 12.1 75 40-120 1-80 (357)
78 PRK12904 preprotein translocas 99.5 1E-13 2.2E-18 120.6 10.8 122 36-165 81-217 (830)
79 PRK11664 ATP-dependent RNA hel 99.5 3.6E-13 7.8E-18 118.5 12.6 109 42-160 11-127 (812)
80 TIGR00595 priA primosomal prot 99.5 2.2E-13 4.7E-18 114.6 10.5 102 55-163 1-108 (505)
81 cd00046 DEXDc DEAD-like helica 99.5 1.1E-12 2.4E-17 90.7 11.6 106 52-160 1-114 (144)
82 PF04851 ResIII: Type III rest 99.5 3.4E-13 7.3E-18 98.3 9.0 130 36-171 3-169 (184)
83 TIGR01970 DEAH_box_HrpB ATP-de 99.5 9.3E-13 2E-17 115.9 13.0 108 42-159 8-123 (819)
84 TIGR01587 cas3_core CRISPR-ass 99.4 7.3E-13 1.6E-17 107.0 10.7 53 53-106 1-53 (358)
85 COG1061 SSL2 DNA or RNA helica 99.4 1.8E-12 3.9E-17 107.6 11.7 120 36-170 36-167 (442)
86 KOG0352|consensus 99.4 6.1E-13 1.3E-17 107.1 8.5 134 24-168 6-166 (641)
87 COG4581 Superfamily II RNA hel 99.4 1.2E-12 2.7E-17 115.6 10.6 118 29-158 113-238 (1041)
88 PRK13107 preprotein translocas 99.4 1.5E-12 3.3E-17 113.6 10.7 122 36-165 82-218 (908)
89 COG0514 RecQ Superfamily II DN 99.4 1.6E-12 3.4E-17 109.6 10.2 128 32-170 13-158 (590)
90 COG1197 Mfd Transcription-repa 99.4 1.8E-11 4E-16 108.7 15.7 145 19-168 577-738 (1139)
91 TIGR01407 dinG_rel DnaQ family 99.4 5.3E-12 1.1E-16 112.3 12.5 97 22-122 232-334 (850)
92 PRK11448 hsdR type I restricti 99.4 8.4E-12 1.8E-16 112.9 13.1 123 36-162 413-553 (1123)
93 TIGR00603 rad25 DNA repair hel 99.4 1.8E-11 4E-16 105.9 13.6 124 36-171 255-397 (732)
94 COG1198 PriA Primosomal protei 99.3 2.1E-11 4.5E-16 105.4 11.9 121 36-163 198-328 (730)
95 COG1110 Reverse gyrase [DNA re 99.3 4.1E-11 9E-16 104.9 13.5 128 28-159 74-213 (1187)
96 KOG0353|consensus 99.3 4.9E-11 1.1E-15 95.2 9.9 150 6-168 64-240 (695)
97 PRK09694 helicase Cas3; Provis 99.2 9.7E-11 2.1E-15 103.6 12.1 87 35-122 285-372 (878)
98 KOG0951|consensus 99.2 2E-11 4.4E-16 108.3 7.3 134 20-159 295-447 (1674)
99 PRK07246 bifunctional ATP-depe 99.2 1.1E-10 2.4E-15 103.2 10.9 85 32-122 242-331 (820)
100 KOG0351|consensus 99.2 4.7E-11 1E-15 105.7 8.2 135 24-169 252-411 (941)
101 PRK12326 preprotein translocas 99.2 3.2E-10 7E-15 97.4 11.9 122 33-163 76-212 (764)
102 PRK12906 secA preprotein trans 99.2 2E-10 4.3E-15 100.0 10.7 121 36-164 80-215 (796)
103 TIGR03117 cas_csf4 CRISPR-asso 99.2 2.8E-10 6.1E-15 97.5 10.6 76 46-122 11-88 (636)
104 PRK13103 secA preprotein trans 99.1 3.5E-10 7.7E-15 99.1 10.5 121 36-164 82-217 (913)
105 TIGR00348 hsdR type I site-spe 99.1 9.4E-10 2E-14 95.6 12.3 127 37-171 239-387 (667)
106 KOG0947|consensus 99.1 3.8E-10 8.3E-15 98.3 8.1 112 32-159 294-413 (1248)
107 smart00489 DEXDc3 DEAD-like he 99.0 1.7E-09 3.7E-14 85.2 9.7 70 37-106 9-85 (289)
108 smart00488 DEXDc2 DEAD-like he 99.0 1.7E-09 3.7E-14 85.2 9.7 70 37-106 9-85 (289)
109 PF07517 SecA_DEAD: SecA DEAD- 99.0 8.4E-09 1.8E-13 80.0 12.6 123 31-162 73-210 (266)
110 COG4098 comFA Superfamily II D 98.9 5.9E-09 1.3E-13 82.3 9.0 111 36-159 97-212 (441)
111 COG4096 HsdR Type I site-speci 98.9 9.8E-09 2.1E-13 88.8 9.1 124 36-170 165-306 (875)
112 CHL00122 secA preprotein trans 98.9 1.3E-08 2.9E-13 89.0 9.5 124 33-165 74-212 (870)
113 KOG0951|consensus 98.9 1.4E-09 3.1E-14 97.0 3.3 118 34-158 1141-1262(1674)
114 KOG0948|consensus 98.8 1.1E-08 2.3E-13 87.7 7.2 109 36-159 129-245 (1041)
115 PRK08074 bifunctional ATP-depe 98.8 4E-08 8.7E-13 88.4 10.6 87 33-122 255-347 (928)
116 PRK12902 secA preprotein trans 98.7 1.6E-07 3.4E-12 82.6 11.3 120 36-163 85-219 (939)
117 PRK14873 primosome assembly pr 98.7 7.9E-08 1.7E-12 83.4 9.4 102 56-163 165-272 (665)
118 PRK11747 dinG ATP-dependent DN 98.6 3.2E-07 6.9E-12 80.4 11.2 84 33-119 23-117 (697)
119 TIGR00604 rad3 DNA repair heli 98.6 3.8E-07 8.3E-12 80.1 10.0 74 33-106 7-84 (705)
120 KOG0949|consensus 98.6 1.3E-07 2.9E-12 83.1 6.9 119 36-158 511-641 (1330)
121 PF00176 SNF2_N: SNF2 family N 98.6 2.2E-07 4.7E-12 72.8 7.4 107 50-159 24-144 (299)
122 PRK11131 ATP-dependent RNA hel 98.5 7.8E-07 1.7E-11 81.5 11.2 106 40-159 78-196 (1294)
123 COG1199 DinG Rad3-related DNA 98.5 4.8E-07 1.1E-11 78.8 8.8 73 31-105 10-86 (654)
124 KOG0950|consensus 98.5 2.5E-07 5.4E-12 81.1 6.8 140 24-170 211-366 (1008)
125 PF13604 AAA_30: AAA domain; P 98.5 1.4E-06 3E-11 64.9 9.8 113 36-171 1-115 (196)
126 TIGR00376 DNA helicase, putati 98.4 8.7E-06 1.9E-10 70.7 14.3 67 35-104 156-223 (637)
127 PF02562 PhoH: PhoH-like prote 98.4 1.8E-06 3.9E-11 64.6 8.7 127 35-172 3-142 (205)
128 PRK04914 ATP-dependent helicas 98.4 2.7E-06 5.9E-11 76.4 10.8 118 36-160 152-283 (956)
129 PLN03142 Probable chromatin-re 98.4 4E-06 8.6E-11 75.8 11.7 120 36-160 169-302 (1033)
130 PRK12903 secA preprotein trans 98.4 2.7E-06 5.7E-11 74.9 10.2 123 33-164 76-213 (925)
131 PF13245 AAA_19: Part of AAA d 98.4 2.5E-06 5.4E-11 53.9 7.3 59 44-102 2-62 (76)
132 PF13086 AAA_11: AAA domain; P 98.4 3.2E-06 7E-11 63.6 8.9 68 36-104 1-75 (236)
133 TIGR01967 DEAH_box_HrpA ATP-de 98.3 1.1E-05 2.4E-10 74.3 12.8 120 31-159 59-189 (1283)
134 KOG1802|consensus 98.3 9E-06 1.9E-10 69.5 10.2 85 28-119 402-486 (935)
135 TIGR01447 recD exodeoxyribonuc 98.2 1.3E-05 2.9E-10 68.9 11.1 126 38-171 147-281 (586)
136 COG4889 Predicted helicase [Ge 98.2 5.7E-06 1.2E-10 72.7 8.2 128 24-159 149-314 (1518)
137 PF00580 UvrD-helicase: UvrD/R 98.2 7.9E-06 1.7E-10 64.3 8.5 70 37-108 1-71 (315)
138 COG1203 CRISPR-associated heli 98.2 8.9E-06 1.9E-10 71.8 8.7 73 37-109 196-273 (733)
139 PF07652 Flavi_DEAD: Flaviviru 98.2 3.3E-06 7.3E-11 59.4 4.7 95 50-159 3-105 (148)
140 KOG1123|consensus 98.1 3.1E-06 6.6E-11 70.3 4.6 128 36-175 302-451 (776)
141 COG0610 Type I site-specific r 98.1 7.7E-05 1.7E-09 67.6 13.1 112 52-169 274-396 (962)
142 PRK10875 recD exonuclease V su 98.1 8.6E-05 1.9E-09 64.2 12.5 131 38-171 154-287 (615)
143 PRK10536 hypothetical protein; 98.1 0.00012 2.7E-09 56.6 11.7 61 32-93 55-115 (262)
144 PRK12900 secA preprotein trans 98.0 3.2E-05 6.9E-10 69.1 8.3 119 37-163 139-272 (1025)
145 TIGR01448 recD_rel helicase, p 98.0 8.3E-05 1.8E-09 65.6 10.9 119 32-171 320-438 (720)
146 KOG0389|consensus 97.9 7.8E-05 1.7E-09 64.8 9.5 118 37-159 400-534 (941)
147 KOG0952|consensus 97.9 5.4E-06 1.2E-10 73.7 2.5 120 34-158 925-1055(1230)
148 PRK13889 conjugal transfer rel 97.8 0.00065 1.4E-08 61.7 14.1 113 32-172 343-456 (988)
149 COG0556 UvrB Helicase subunit 97.8 6.2E-05 1.3E-09 63.1 7.0 67 36-108 12-83 (663)
150 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00096 2.1E-08 59.2 14.5 123 21-171 338-461 (744)
151 PRK12901 secA preprotein trans 97.8 9.8E-05 2.1E-09 66.3 8.2 118 37-162 170-303 (1112)
152 PF05970 PIF1: PIF1-like helic 97.8 0.00011 2.3E-09 59.9 7.9 59 37-98 2-66 (364)
153 PF09848 DUF2075: Uncharacteri 97.7 0.00015 3.2E-09 58.8 7.2 52 53-105 3-54 (352)
154 KOG1805|consensus 97.7 0.00056 1.2E-08 60.9 10.8 130 19-160 656-807 (1100)
155 PRK15483 type III restriction- 97.5 0.00047 1E-08 62.1 8.6 51 52-103 60-110 (986)
156 KOG0390|consensus 97.5 0.0011 2.3E-08 58.4 10.5 121 36-159 238-386 (776)
157 PRK13826 Dtr system oriT relax 97.5 0.0048 1E-07 56.7 14.4 125 20-172 366-491 (1102)
158 KOG0387|consensus 97.5 0.00091 2E-08 58.5 9.2 80 36-122 205-291 (923)
159 PF02399 Herpes_ori_bp: Origin 97.5 0.00073 1.6E-08 59.5 8.7 52 52-105 50-101 (824)
160 KOG0385|consensus 97.4 0.0014 2.9E-08 57.4 9.6 118 36-159 167-299 (971)
161 PRK10919 ATP-dependent DNA hel 97.3 0.00069 1.5E-08 59.5 7.3 70 36-107 2-72 (672)
162 COG1643 HrpA HrpA-like helicas 97.3 0.00044 9.5E-09 61.6 6.0 113 38-158 52-171 (845)
163 KOG1803|consensus 97.3 0.00077 1.7E-08 57.3 6.9 63 36-101 185-248 (649)
164 PRK11054 helD DNA helicase IV; 97.3 0.0019 4.2E-08 56.7 9.4 71 35-107 195-266 (684)
165 PRK13894 conjugal transfer ATP 97.3 0.0012 2.6E-08 52.9 7.4 68 24-94 122-190 (319)
166 COG1484 DnaC DNA replication p 97.3 0.0032 7E-08 48.8 9.6 71 29-103 76-153 (254)
167 KOG1002|consensus 97.3 0.0027 5.8E-08 53.3 9.4 95 36-139 184-283 (791)
168 PRK14722 flhF flagellar biosyn 97.3 0.0022 4.7E-08 52.4 8.8 83 51-139 137-221 (374)
169 KOG0953|consensus 97.3 0.00049 1.1E-08 58.0 5.1 93 52-158 192-284 (700)
170 PRK13833 conjugal transfer pro 97.3 0.0015 3.3E-08 52.3 7.7 65 27-94 121-186 (323)
171 COG1875 NYN ribonuclease and A 97.2 0.0023 5.1E-08 51.7 8.5 66 32-97 224-291 (436)
172 COG1419 FlhF Flagellar GTP-bin 97.2 0.0087 1.9E-07 49.1 11.8 84 51-139 203-287 (407)
173 TIGR00631 uvrb excinuclease AB 97.2 0.0019 4.2E-08 56.5 8.4 66 36-107 9-79 (655)
174 TIGR02782 TrbB_P P-type conjug 97.2 0.0021 4.5E-08 51.0 7.9 68 24-94 106-174 (299)
175 TIGR01075 uvrD DNA helicase II 97.2 0.0014 3E-08 58.0 7.3 71 35-107 3-74 (715)
176 TIGR01074 rep ATP-dependent DN 97.1 0.0018 4E-08 56.7 7.8 69 37-107 2-71 (664)
177 KOG0920|consensus 97.1 0.0055 1.2E-07 55.0 10.5 116 37-158 174-296 (924)
178 PRK11773 uvrD DNA-dependent he 97.1 0.0019 4.2E-08 57.2 7.6 71 35-107 8-79 (721)
179 TIGR02785 addA_Gpos recombinat 97.0 0.0031 6.7E-08 59.0 8.6 69 37-107 2-70 (1232)
180 cd00009 AAA The AAA+ (ATPases 97.0 0.027 5.9E-07 38.4 11.4 25 51-76 19-43 (151)
181 KOG0391|consensus 97.0 0.0023 4.9E-08 58.4 6.9 123 37-164 616-754 (1958)
182 COG0653 SecA Preprotein transl 97.0 0.0065 1.4E-07 53.9 9.5 112 42-159 84-210 (822)
183 PRK12723 flagellar biosynthesi 96.9 0.0075 1.6E-07 49.6 9.1 61 52-116 175-238 (388)
184 PRK04296 thymidine kinase; Pro 96.9 0.0027 5.9E-08 47.0 5.8 37 51-90 2-38 (190)
185 PF12340 DUF3638: Protein of u 96.8 0.033 7.2E-07 42.4 11.2 97 16-117 5-104 (229)
186 KOG4150|consensus 96.8 0.00034 7.5E-09 59.3 0.3 130 29-159 279-422 (1034)
187 PRK08116 hypothetical protein; 96.8 0.026 5.7E-07 44.1 10.7 44 52-99 115-158 (268)
188 PRK14712 conjugal transfer nic 96.8 0.0086 1.9E-07 56.9 9.2 62 36-98 835-900 (1623)
189 TIGR01547 phage_term_2 phage t 96.8 0.0076 1.6E-07 49.6 8.0 116 53-172 3-124 (396)
190 PRK07952 DNA replication prote 96.8 0.026 5.7E-07 43.5 10.4 43 52-98 100-142 (244)
191 TIGR02760 TraI_TIGR conjugativ 96.7 0.024 5.1E-07 55.4 11.9 120 36-172 429-552 (1960)
192 TIGR02760 TraI_TIGR conjugativ 96.7 0.027 5.8E-07 55.1 12.1 112 35-171 1018-1134(1960)
193 TIGR02525 plasmid_TraJ plasmid 96.7 0.0062 1.3E-07 49.8 6.7 27 50-77 148-174 (372)
194 PHA02533 17 large terminase pr 96.7 0.018 3.9E-07 49.3 9.7 119 36-159 59-179 (534)
195 COG4962 CpaF Flp pilus assembl 96.6 0.0081 1.8E-07 48.2 6.9 63 27-95 150-213 (355)
196 TIGR01073 pcrA ATP-dependent D 96.6 0.0078 1.7E-07 53.4 7.5 71 35-107 3-74 (726)
197 PRK05298 excinuclease ABC subu 96.6 0.01 2.3E-07 52.0 8.1 66 36-107 12-82 (652)
198 PRK13709 conjugal transfer nic 96.6 0.039 8.5E-07 53.2 12.3 62 36-98 967-1032(1747)
199 PRK12727 flagellar biosynthesi 96.6 0.034 7.5E-07 47.5 10.5 20 50-69 349-368 (559)
200 PF03354 Terminase_1: Phage Te 96.5 0.028 6E-07 47.5 9.9 134 39-173 1-147 (477)
201 COG2805 PilT Tfp pilus assembl 96.5 0.0098 2.1E-07 47.1 6.4 25 54-79 128-152 (353)
202 PF05876 Terminase_GpA: Phage 96.4 0.0069 1.5E-07 52.2 5.8 121 36-159 16-144 (557)
203 PRK13851 type IV secretion sys 96.4 0.0073 1.6E-07 48.9 5.3 44 47-94 158-201 (344)
204 PRK05703 flhF flagellar biosyn 96.4 0.039 8.5E-07 46.0 9.7 63 51-118 221-285 (424)
205 PRK05973 replicative DNA helic 96.4 0.016 3.5E-07 44.5 6.9 83 18-105 22-114 (237)
206 PRK11889 flhF flagellar biosyn 96.3 0.041 8.9E-07 45.5 9.4 81 52-139 242-326 (436)
207 PRK13900 type IV secretion sys 96.3 0.02 4.4E-07 46.2 7.3 29 48-77 157-185 (332)
208 PF01695 IstB_IS21: IstB-like 96.3 0.014 3.1E-07 42.7 5.9 46 49-98 45-90 (178)
209 PRK08181 transposase; Validate 96.3 0.024 5.1E-07 44.4 7.4 60 37-100 88-151 (269)
210 COG3973 Superfamily I DNA and 96.3 0.028 6.1E-07 48.4 8.2 91 18-108 186-286 (747)
211 COG2804 PulE Type II secretory 96.2 0.016 3.5E-07 48.7 6.6 41 38-79 243-285 (500)
212 PRK14087 dnaA chromosomal repl 96.2 0.036 7.9E-07 46.5 8.8 49 52-102 142-190 (450)
213 PRK11823 DNA repair protein Ra 96.2 0.026 5.7E-07 47.3 7.9 87 51-159 80-166 (446)
214 KOG0392|consensus 96.2 0.013 2.9E-07 53.8 6.3 119 37-159 976-1110(1549)
215 COG1444 Predicted P-loop ATPas 96.2 0.17 3.7E-06 44.9 13.0 136 29-172 207-346 (758)
216 TIGR03015 pepcterm_ATPase puta 96.2 0.093 2E-06 40.5 10.5 34 35-68 22-60 (269)
217 PRK14956 DNA polymerase III su 96.2 0.033 7.3E-07 47.0 8.3 24 148-171 120-143 (484)
218 COG1474 CDC6 Cdc6-related prot 96.2 0.02 4.4E-07 46.7 6.9 25 52-77 43-67 (366)
219 PRK13764 ATPase; Provisional 96.2 0.013 2.8E-07 50.7 5.9 27 50-77 256-282 (602)
220 PRK06921 hypothetical protein; 96.1 0.08 1.7E-06 41.3 9.9 49 50-101 116-164 (266)
221 KOG0922|consensus 96.1 0.064 1.4E-06 46.4 9.5 107 42-159 57-173 (674)
222 PRK00411 cdc6 cell division co 96.0 0.024 5.3E-07 46.3 6.9 36 52-88 56-91 (394)
223 PRK08939 primosomal protein Dn 96.0 0.12 2.6E-06 41.2 10.5 44 51-98 156-199 (306)
224 PF00448 SRP54: SRP54-type pro 96.0 0.1 2.2E-06 38.9 9.5 60 54-120 4-65 (196)
225 PRK14964 DNA polymerase III su 95.9 0.093 2E-06 44.6 10.0 102 52-171 36-138 (491)
226 PRK10436 hypothetical protein; 95.9 0.02 4.3E-07 48.2 6.0 45 29-77 197-243 (462)
227 cd01121 Sms Sms (bacterial rad 95.9 0.048 1E-06 44.7 8.0 86 51-158 82-167 (372)
228 KOG1133|consensus 95.9 0.013 2.8E-07 50.9 4.7 41 36-76 15-59 (821)
229 TIGR02524 dot_icm_DotB Dot/Icm 95.9 0.028 6E-07 45.8 6.4 27 50-77 133-159 (358)
230 PRK06835 DNA replication prote 95.9 0.059 1.3E-06 43.4 8.2 47 50-100 182-228 (329)
231 KOG0388|consensus 95.9 0.026 5.6E-07 49.5 6.3 117 37-158 568-704 (1185)
232 cd01130 VirB11-like_ATPase Typ 95.9 0.017 3.6E-07 42.5 4.7 45 29-76 4-49 (186)
233 PRK04537 ATP-dependent RNA hel 95.8 0.11 2.4E-06 45.0 10.3 74 80-158 255-334 (572)
234 PRK12377 putative replication 95.8 0.033 7.1E-07 43.1 6.4 46 52-101 102-147 (248)
235 COG3587 Restriction endonuclea 95.8 0.013 2.8E-07 52.0 4.6 54 52-106 75-128 (985)
236 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.14 3E-06 36.9 9.2 31 54-87 5-35 (159)
237 KOG0924|consensus 95.8 0.066 1.4E-06 46.9 8.6 62 38-103 358-421 (1042)
238 cd01120 RecA-like_NTPases RecA 95.8 0.17 3.7E-06 35.3 9.7 39 54-95 2-40 (165)
239 TIGR02533 type_II_gspE general 95.8 0.029 6.4E-07 47.5 6.4 45 29-77 221-267 (486)
240 KOG0331|consensus 95.7 0.093 2E-06 44.6 9.1 83 70-158 330-418 (519)
241 KOG0925|consensus 95.7 0.029 6.3E-07 47.2 5.8 90 11-102 22-111 (699)
242 PF00437 T2SE: Type II/IV secr 95.7 0.016 3.4E-07 45.1 4.1 44 49-95 125-168 (270)
243 TIGR03499 FlhF flagellar biosy 95.7 0.07 1.5E-06 42.0 7.8 19 51-69 194-212 (282)
244 PHA03368 DNA packaging termina 95.6 0.15 3.2E-06 44.7 9.8 116 50-170 253-373 (738)
245 TIGR03819 heli_sec_ATPase heli 95.5 0.044 9.6E-07 44.3 6.4 50 24-76 152-202 (340)
246 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.033 7.2E-07 42.6 5.3 53 50-106 20-72 (237)
247 cd01129 PulE-GspE PulE/GspE Th 95.5 0.045 9.7E-07 42.7 6.0 46 28-77 58-105 (264)
248 PRK14974 cell division protein 95.5 0.23 5E-06 40.1 10.2 56 52-115 141-199 (336)
249 TIGR02538 type_IV_pilB type IV 95.4 0.042 9E-07 47.5 6.2 45 29-77 295-341 (564)
250 KOG4439|consensus 95.4 0.11 2.3E-06 45.6 8.3 101 36-139 325-437 (901)
251 TIGR00580 mfd transcription-re 95.4 0.19 4.1E-06 46.0 10.4 77 81-160 659-741 (926)
252 PRK14086 dnaA chromosomal repl 95.4 0.077 1.7E-06 46.1 7.5 45 52-98 315-359 (617)
253 KOG0989|consensus 95.3 0.033 7.1E-07 44.2 4.7 33 40-72 40-78 (346)
254 KOG1132|consensus 95.3 0.013 2.8E-07 52.1 2.6 39 36-74 21-63 (945)
255 cd01124 KaiC KaiC is a circadi 95.2 0.049 1.1E-06 39.5 5.3 48 54-105 2-49 (187)
256 PRK14963 DNA polymerase III su 95.2 0.16 3.4E-06 43.4 8.9 25 147-171 114-138 (504)
257 TIGR02562 cas3_yersinia CRISPR 95.2 0.089 1.9E-06 48.2 7.6 84 38-123 410-501 (1110)
258 PF06745 KaiC: KaiC; InterPro 95.2 0.05 1.1E-06 41.1 5.3 53 50-105 18-70 (226)
259 smart00382 AAA ATPases associa 95.2 0.035 7.5E-07 37.4 4.1 40 51-93 2-41 (148)
260 COG0630 VirB11 Type IV secreto 95.2 0.11 2.4E-06 41.5 7.5 59 12-76 108-167 (312)
261 TIGR00643 recG ATP-dependent D 95.1 1.6 3.6E-05 38.3 15.2 80 81-160 447-537 (630)
262 PRK11192 ATP-dependent RNA hel 95.1 0.36 7.9E-06 40.1 10.7 82 72-158 235-322 (434)
263 PLN03025 replication factor C 95.1 0.42 9E-06 38.2 10.6 24 52-76 35-58 (319)
264 PRK06731 flhF flagellar biosyn 95.1 0.66 1.4E-05 36.4 11.3 19 52-70 76-94 (270)
265 TIGR00678 holB DNA polymerase 95.1 0.23 5E-06 36.3 8.5 17 52-68 15-31 (188)
266 PHA02535 P terminase ATPase su 95.1 0.12 2.6E-06 44.6 7.7 89 18-108 120-208 (581)
267 PRK14961 DNA polymerase III su 95.0 0.16 3.4E-06 41.5 8.2 17 53-69 40-56 (363)
268 KOG0344|consensus 95.0 0.88 1.9E-05 39.1 12.5 94 60-158 366-465 (593)
269 COG0513 SrmB Superfamily II DN 95.0 0.24 5.3E-06 42.3 9.5 73 81-158 272-350 (513)
270 PRK00771 signal recognition pa 95.0 0.26 5.5E-06 41.3 9.4 56 52-114 96-153 (437)
271 PF03237 Terminase_6: Terminas 95.0 0.49 1.1E-05 37.7 10.8 43 55-97 1-43 (384)
272 PRK14958 DNA polymerase III su 95.0 0.14 3E-06 43.8 7.9 24 148-171 118-141 (509)
273 cd01126 TraG_VirD4 The TraG/Tr 94.9 0.021 4.5E-07 46.8 2.8 47 53-104 1-47 (384)
274 PF05127 Helicase_RecD: Helica 94.9 0.0083 1.8E-07 44.0 0.4 110 55-171 1-112 (177)
275 PRK05707 DNA polymerase III su 94.9 0.18 3.8E-06 40.7 8.0 32 37-68 4-39 (328)
276 TIGR01425 SRP54_euk signal rec 94.9 0.44 9.5E-06 39.8 10.4 80 53-139 102-188 (429)
277 PRK12726 flagellar biosynthesi 94.9 0.35 7.5E-06 39.9 9.5 58 51-115 206-265 (407)
278 cd01131 PilT Pilus retraction 94.9 0.055 1.2E-06 40.2 4.7 23 54-77 4-26 (198)
279 TIGR00614 recQ_fam ATP-depende 94.8 0.4 8.7E-06 40.5 10.3 73 81-158 225-303 (470)
280 PRK04837 ATP-dependent RNA hel 94.8 0.24 5.3E-06 41.1 8.9 73 81-158 254-332 (423)
281 PRK10917 ATP-dependent DNA hel 94.8 2.3 5E-05 37.8 15.3 80 81-160 470-560 (681)
282 PF13177 DNA_pol3_delta2: DNA 94.8 0.59 1.3E-05 33.6 9.8 102 52-171 20-124 (162)
283 TIGR02237 recomb_radB DNA repa 94.8 0.22 4.9E-06 37.0 7.8 39 50-91 11-49 (209)
284 PRK08691 DNA polymerase III su 94.7 0.28 6.2E-06 43.3 9.3 19 52-70 39-57 (709)
285 PF02534 T4SS-DNA_transf: Type 94.7 0.047 1E-06 45.9 4.5 49 52-105 45-93 (469)
286 COG1219 ClpX ATP-dependent pro 94.7 0.021 4.5E-07 45.7 2.1 18 51-68 97-114 (408)
287 PRK09111 DNA polymerase III su 94.7 0.19 4.2E-06 43.7 8.2 107 52-171 47-154 (598)
288 COG1197 Mfd Transcription-repa 94.6 1.5 3.2E-05 40.9 13.7 126 40-168 731-892 (1139)
289 PRK07764 DNA polymerase III su 94.6 0.23 5.1E-06 44.8 8.7 102 52-170 38-141 (824)
290 PRK11776 ATP-dependent RNA hel 94.6 0.52 1.1E-05 39.5 10.4 73 81-158 241-319 (460)
291 TIGR02788 VirB11 P-type DNA tr 94.6 0.079 1.7E-06 42.2 5.2 28 48-76 141-168 (308)
292 PHA03333 putative ATPase subun 94.6 0.71 1.5E-05 40.8 11.2 71 36-108 169-242 (752)
293 PRK10689 transcription-repair 94.6 0.44 9.6E-06 44.7 10.6 80 82-164 809-895 (1147)
294 TIGR02858 spore_III_AA stage I 94.6 0.38 8.2E-06 37.7 8.8 23 45-67 102-127 (270)
295 COG0553 HepA Superfamily II DN 94.5 0.15 3.3E-06 45.7 7.3 121 35-159 337-482 (866)
296 PRK14949 DNA polymerase III su 94.4 0.18 3.9E-06 45.7 7.5 24 148-171 118-141 (944)
297 KOG0923|consensus 94.4 0.075 1.6E-06 46.3 4.9 60 38-101 267-329 (902)
298 PRK14962 DNA polymerase III su 94.4 0.19 4.2E-06 42.5 7.3 18 52-69 37-54 (472)
299 TIGR01420 pilT_fam pilus retra 94.4 0.097 2.1E-06 42.4 5.4 27 50-77 121-147 (343)
300 TIGR00631 uvrb excinuclease AB 94.4 0.33 7.1E-06 42.8 8.9 83 80-167 440-529 (655)
301 PF12846 AAA_10: AAA-like doma 94.3 0.09 1.9E-06 40.9 5.0 37 52-91 2-38 (304)
302 PRK06526 transposase; Provisio 94.3 0.13 2.7E-06 40.0 5.7 48 47-98 94-141 (254)
303 cd01122 GP4d_helicase GP4d_hel 94.3 0.038 8.3E-07 42.9 2.8 66 23-90 2-67 (271)
304 PTZ00110 helicase; Provisional 94.3 0.89 1.9E-05 39.2 11.3 84 68-158 365-454 (545)
305 PRK06645 DNA polymerase III su 94.3 0.3 6.5E-06 41.7 8.2 19 52-70 44-62 (507)
306 PRK14960 DNA polymerase III su 94.3 0.22 4.8E-06 43.8 7.5 19 52-70 38-56 (702)
307 PRK14721 flhF flagellar biosyn 94.3 0.31 6.7E-06 40.6 8.1 19 51-69 191-209 (420)
308 TIGR02868 CydC thiol reductant 94.2 0.091 2E-06 44.8 5.1 27 50-78 360-386 (529)
309 PF01443 Viral_helicase1: Vira 94.2 0.079 1.7E-06 39.9 4.3 21 148-168 61-81 (234)
310 TIGR02640 gas_vesic_GvpN gas v 94.2 0.058 1.3E-06 41.9 3.5 25 44-68 14-38 (262)
311 PRK10590 ATP-dependent RNA hel 94.1 0.58 1.3E-05 39.3 9.7 74 80-158 243-322 (456)
312 KOG1000|consensus 94.1 0.46 1E-05 40.3 8.7 115 35-159 197-318 (689)
313 PF10412 TrwB_AAD_bind: Type I 94.1 0.087 1.9E-06 43.4 4.7 49 46-97 10-58 (386)
314 PRK14955 DNA polymerase III su 94.1 0.2 4.4E-06 41.3 6.7 19 52-70 39-57 (397)
315 PRK08769 DNA polymerase III su 94.0 0.63 1.4E-05 37.4 9.2 42 34-76 2-50 (319)
316 PRK14723 flhF flagellar biosyn 94.0 0.42 9.2E-06 42.7 8.9 82 52-139 186-269 (767)
317 PRK13897 type IV secretion sys 94.0 0.074 1.6E-06 46.3 4.2 49 52-105 159-207 (606)
318 KOG0058|consensus 94.0 0.072 1.6E-06 46.7 4.1 29 50-80 493-521 (716)
319 PRK14952 DNA polymerase III su 94.0 0.37 8E-06 41.9 8.4 102 53-171 37-140 (584)
320 PRK04328 hypothetical protein; 94.0 0.14 3.1E-06 39.5 5.4 53 50-106 22-74 (249)
321 KOG0335|consensus 94.0 1.3 2.9E-05 37.4 11.2 151 14-169 237-425 (482)
322 COG1200 RecG RecG-like helicas 93.9 3.3 7.3E-05 36.4 13.9 122 38-159 397-561 (677)
323 PRK01297 ATP-dependent RNA hel 93.9 1.1 2.4E-05 37.9 11.0 73 81-158 334-412 (475)
324 PRK14954 DNA polymerase III su 93.9 0.33 7.2E-06 42.5 8.0 109 52-170 39-148 (620)
325 PRK06995 flhF flagellar biosyn 93.9 0.43 9.4E-06 40.5 8.5 19 51-69 256-274 (484)
326 TIGR02784 addA_alphas double-s 93.9 0.25 5.4E-06 46.3 7.6 57 51-107 10-66 (1141)
327 PF04665 Pox_A32: Poxvirus A32 93.8 0.12 2.5E-06 39.8 4.6 25 52-77 14-38 (241)
328 PRK14951 DNA polymerase III su 93.8 0.29 6.3E-06 42.8 7.5 24 148-171 123-146 (618)
329 PRK08727 hypothetical protein; 93.8 0.22 4.7E-06 38.0 6.1 51 52-106 42-92 (233)
330 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.19 4.1E-06 39.0 5.8 38 50-90 35-72 (259)
331 PRK14950 DNA polymerase III su 93.7 0.43 9.3E-06 41.5 8.4 18 52-69 39-56 (585)
332 PRK08533 flagellar accessory p 93.7 0.19 4.2E-06 38.3 5.6 53 49-105 22-74 (230)
333 TIGR00416 sms DNA repair prote 93.7 0.45 9.8E-06 40.1 8.2 52 51-106 94-145 (454)
334 PF00308 Bac_DnaA: Bacterial d 93.7 0.11 2.5E-06 39.2 4.3 43 53-97 36-78 (219)
335 PF14617 CMS1: U3-containing 9 93.7 0.13 2.9E-06 39.8 4.6 77 80-158 124-210 (252)
336 TIGR00064 ftsY signal recognit 93.6 1.5 3.3E-05 34.4 10.6 56 52-114 73-130 (272)
337 PF13555 AAA_29: P-loop contai 93.6 0.071 1.5E-06 32.1 2.4 19 50-68 22-40 (62)
338 PRK05563 DNA polymerase III su 93.6 0.42 9.1E-06 41.4 8.0 102 52-171 39-141 (559)
339 PHA02544 44 clamp loader, smal 93.6 0.58 1.3E-05 37.1 8.3 15 53-67 44-59 (316)
340 PRK09183 transposase/IS protei 93.5 0.23 5E-06 38.6 5.8 47 48-98 99-145 (259)
341 cd01393 recA_like RecA is a b 93.5 0.57 1.2E-05 35.1 7.9 42 51-92 19-63 (226)
342 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.5 0.25 5.4E-06 34.7 5.5 19 49-67 24-42 (144)
343 COG0470 HolB ATPase involved i 93.5 0.85 1.8E-05 36.0 9.2 27 50-77 22-49 (325)
344 PRK12323 DNA polymerase III su 93.5 0.46 9.9E-06 41.8 8.0 24 148-171 123-146 (700)
345 PRK14959 DNA polymerase III su 93.5 0.4 8.7E-06 41.9 7.7 19 52-70 39-57 (624)
346 TIGR03881 KaiC_arch_4 KaiC dom 93.5 0.25 5.3E-06 37.3 5.8 51 50-104 19-69 (229)
347 TIGR02012 tigrfam_recA protein 93.4 0.26 5.6E-06 39.6 6.1 43 51-96 55-97 (321)
348 PRK13850 type IV secretion sys 93.4 0.11 2.5E-06 45.7 4.4 47 52-103 140-186 (670)
349 COG1120 FepC ABC-type cobalami 93.4 0.44 9.5E-06 37.1 7.1 28 146-173 153-184 (258)
350 PF03969 AFG1_ATPase: AFG1-lik 93.3 2.8 6E-05 34.4 12.0 50 51-106 62-111 (362)
351 KOG0333|consensus 93.3 0.66 1.4E-05 39.6 8.4 70 81-155 516-591 (673)
352 PF12775 AAA_7: P-loop contain 93.2 0.066 1.4E-06 42.0 2.4 21 47-67 29-49 (272)
353 COG4178 ABC-type uncharacteriz 93.2 0.27 6E-06 42.6 6.2 31 144-174 528-562 (604)
354 PRK07994 DNA polymerase III su 93.1 0.49 1.1E-05 41.6 7.7 24 148-171 118-141 (647)
355 PRK11057 ATP-dependent DNA hel 93.1 1.4 3E-05 38.5 10.6 73 81-158 235-313 (607)
356 cd01127 TrwB Bacterial conjuga 93.1 0.095 2.1E-06 43.5 3.3 48 45-95 36-83 (410)
357 PF13481 AAA_25: AAA domain; P 93.1 0.53 1.2E-05 34.3 7.0 57 50-107 31-94 (193)
358 PRK09112 DNA polymerase III su 93.1 2 4.3E-05 35.0 10.8 24 53-77 47-70 (351)
359 COG0210 UvrD Superfamily I DNA 93.1 0.38 8.3E-06 42.2 7.1 70 36-107 2-72 (655)
360 COG0467 RAD55 RecA-superfamily 93.0 0.23 5E-06 38.4 5.2 53 50-106 22-74 (260)
361 PRK06871 DNA polymerase III su 93.0 0.94 2E-05 36.5 8.7 31 38-68 4-41 (325)
362 cd03115 SRP The signal recogni 93.0 1.8 3.9E-05 31.0 9.5 15 54-68 3-17 (173)
363 PF13191 AAA_16: AAA ATPase do 92.9 0.25 5.4E-06 35.5 5.0 27 51-78 24-50 (185)
364 PF01580 FtsK_SpoIIIE: FtsK/Sp 92.9 0.26 5.7E-06 36.5 5.2 24 51-74 38-61 (205)
365 PRK06647 DNA polymerase III su 92.9 0.67 1.5E-05 40.2 8.2 102 52-171 39-141 (563)
366 PRK05642 DNA replication initi 92.9 0.42 9E-06 36.5 6.3 43 52-98 46-88 (234)
367 TIGR02397 dnaX_nterm DNA polym 92.9 0.74 1.6E-05 37.0 8.1 25 52-77 37-61 (355)
368 PRK09354 recA recombinase A; P 92.8 0.35 7.7E-06 39.3 6.1 43 51-96 60-102 (349)
369 PRK00149 dnaA chromosomal repl 92.8 0.33 7.2E-06 40.7 6.2 46 52-99 149-194 (450)
370 PTZ00424 helicase 45; Provisio 92.8 1.5 3.2E-05 35.9 9.9 73 81-158 266-344 (401)
371 cd00983 recA RecA is a bacter 92.8 0.26 5.6E-06 39.7 5.3 43 51-96 55-97 (325)
372 PRK08451 DNA polymerase III su 92.8 0.93 2E-05 39.0 8.8 24 147-170 115-138 (535)
373 COG1136 SalX ABC-type antimicr 92.8 0.16 3.5E-06 38.7 3.9 29 48-78 28-56 (226)
374 COG1074 RecB ATP-dependent exo 92.8 0.26 5.6E-06 46.2 5.9 58 50-107 15-74 (1139)
375 cd01123 Rad51_DMC1_radA Rad51_ 92.7 0.59 1.3E-05 35.3 7.0 41 50-90 18-61 (235)
376 TIGR00362 DnaA chromosomal rep 92.7 0.37 8E-06 39.8 6.3 45 52-98 137-181 (405)
377 TIGR03743 SXT_TraD conjugative 92.7 0.37 8E-06 42.3 6.4 54 51-107 176-231 (634)
378 PF05729 NACHT: NACHT domain 92.7 0.27 5.8E-06 34.6 4.8 25 53-78 2-26 (166)
379 KOG1131|consensus 92.7 1.1 2.5E-05 38.3 8.9 74 33-106 13-91 (755)
380 PRK07003 DNA polymerase III su 92.7 0.74 1.6E-05 41.3 8.2 24 148-171 118-141 (830)
381 KOG0744|consensus 92.6 0.79 1.7E-05 37.0 7.6 25 52-77 178-202 (423)
382 PF13207 AAA_17: AAA domain; P 92.6 0.092 2E-06 35.3 2.2 15 54-68 2-16 (121)
383 PRK14969 DNA polymerase III su 92.6 0.74 1.6E-05 39.6 8.1 19 52-70 39-57 (527)
384 PF06068 TIP49: TIP49 C-termin 92.6 0.2 4.4E-06 40.9 4.3 37 50-89 49-85 (398)
385 KOG0926|consensus 92.5 0.85 1.8E-05 41.0 8.2 106 44-159 264-382 (1172)
386 PF05621 TniB: Bacterial TniB 92.4 0.44 9.6E-06 37.9 6.0 16 52-67 62-77 (302)
387 PRK13342 recombination factor 92.4 1.1 2.3E-05 37.3 8.5 17 52-68 37-53 (413)
388 PRK08084 DNA replication initi 92.4 0.33 7.1E-06 37.1 5.2 37 51-90 45-81 (235)
389 TIGR02203 MsbA_lipidA lipid A 92.4 0.33 7.1E-06 41.8 5.7 18 49-66 356-373 (571)
390 COG1126 GlnQ ABC-type polar am 92.3 0.2 4.4E-06 38.0 3.8 30 48-79 25-54 (240)
391 PF13401 AAA_22: AAA domain; P 92.3 0.097 2.1E-06 35.6 2.0 19 50-68 3-21 (131)
392 PF01078 Mg_chelatase: Magnesi 92.3 0.2 4.4E-06 37.6 3.8 27 42-68 12-39 (206)
393 PRK10416 signal recognition pa 92.2 2.6 5.5E-05 33.9 10.3 18 51-68 114-131 (318)
394 PRK14965 DNA polymerase III su 92.2 0.76 1.7E-05 39.9 7.8 101 52-170 39-140 (576)
395 PRK11634 ATP-dependent RNA hel 92.2 2 4.3E-05 37.8 10.3 72 82-158 245-322 (629)
396 COG0556 UvrB Helicase subunit 92.2 1.1 2.5E-05 38.4 8.4 85 81-170 445-536 (663)
397 PRK14957 DNA polymerase III su 92.2 0.89 1.9E-05 39.2 8.0 17 53-69 40-56 (546)
398 TIGR02655 circ_KaiC circadian 92.2 0.34 7.4E-06 41.1 5.4 52 51-106 263-314 (484)
399 PRK14088 dnaA chromosomal repl 92.1 0.51 1.1E-05 39.6 6.4 45 52-98 131-175 (440)
400 PRK07940 DNA polymerase III su 92.1 0.56 1.2E-05 38.8 6.5 17 52-68 37-53 (394)
401 COG1224 TIP49 DNA helicase TIP 92.0 0.41 8.9E-06 39.1 5.4 28 50-78 64-91 (450)
402 PLN00206 DEAD-box ATP-dependen 92.0 1.2 2.5E-05 38.2 8.6 73 82-158 367-445 (518)
403 TIGR02655 circ_KaiC circadian 92.0 0.32 6.9E-06 41.3 5.1 54 50-106 20-73 (484)
404 COG4604 CeuD ABC-type enteroch 92.0 0.078 1.7E-06 39.8 1.2 46 50-97 26-76 (252)
405 cd00984 DnaB_C DnaB helicase C 92.0 0.27 5.9E-06 37.3 4.3 39 49-89 11-49 (242)
406 KOG1564|consensus 92.0 0.48 1E-05 37.4 5.6 39 56-94 107-153 (351)
407 TIGR00959 ffh signal recogniti 91.9 2.2 4.8E-05 35.7 9.8 81 53-139 101-188 (428)
408 PRK05896 DNA polymerase III su 91.9 0.87 1.9E-05 39.7 7.6 18 52-69 39-56 (605)
409 PRK14948 DNA polymerase III su 91.9 1.2 2.6E-05 39.1 8.6 18 52-69 39-56 (620)
410 PTZ00301 uridine kinase; Provi 91.9 0.33 7.2E-06 36.6 4.6 22 54-76 6-27 (210)
411 PF13238 AAA_18: AAA domain; P 91.9 0.13 2.8E-06 34.7 2.2 15 54-68 1-15 (129)
412 COG1855 ATPase (PilT family) [ 91.9 0.4 8.7E-06 40.3 5.3 47 13-78 243-289 (604)
413 COG0606 Predicted ATPase with 91.8 0.17 3.7E-06 42.5 3.1 27 42-68 188-215 (490)
414 PF01935 DUF87: Domain of unkn 91.8 0.31 6.7E-06 36.8 4.4 26 51-77 23-48 (229)
415 PF09439 SRPRB: Signal recogni 91.7 0.14 3E-06 37.7 2.3 20 51-70 3-22 (181)
416 TIGR03158 cas3_cyano CRISPR-as 91.7 4.2 9.1E-05 33.1 11.1 70 81-156 271-342 (357)
417 TIGR02880 cbbX_cfxQ probable R 91.7 0.4 8.7E-06 37.8 5.0 18 51-68 58-75 (284)
418 KOG1806|consensus 91.7 0.39 8.6E-06 43.9 5.4 71 34-105 736-806 (1320)
419 PRK11331 5-methylcytosine-spec 91.6 0.26 5.6E-06 41.4 4.0 31 38-68 181-211 (459)
420 PF07728 AAA_5: AAA domain (dy 91.6 0.13 2.9E-06 35.5 2.0 16 53-68 1-16 (139)
421 PLN03130 ABC transporter C fam 91.5 0.46 1E-05 46.1 6.1 27 50-78 1264-1290(1622)
422 TIGR01970 DEAH_box_HrpB ATP-de 91.5 2.3 4.9E-05 38.7 10.1 70 83-154 210-285 (819)
423 PRK07471 DNA polymerase III su 91.5 4.4 9.6E-05 33.2 11.0 25 52-77 42-66 (365)
424 TIGR03754 conj_TOL_TraD conjug 91.5 0.68 1.5E-05 40.6 6.6 53 52-107 181-235 (643)
425 PF00004 AAA: ATPase family as 91.5 0.15 3.4E-06 34.4 2.3 14 54-67 1-14 (132)
426 TIGR03880 KaiC_arch_3 KaiC dom 91.5 0.52 1.1E-05 35.5 5.3 52 50-105 15-66 (224)
427 PRK13876 conjugal transfer cou 91.4 0.16 3.5E-06 44.7 2.8 44 52-100 145-188 (663)
428 PRK13880 conjugal transfer cou 91.4 0.19 4.2E-06 44.1 3.3 44 52-100 176-219 (636)
429 TIGR01389 recQ ATP-dependent D 91.4 2.5 5.3E-05 36.8 10.0 72 82-158 224-301 (591)
430 PRK07993 DNA polymerase III su 91.4 1 2.3E-05 36.3 7.3 32 37-68 3-41 (334)
431 KOG0745|consensus 91.4 0.13 2.9E-06 42.8 2.1 17 51-67 226-242 (564)
432 PRK05298 excinuclease ABC subu 91.3 3.6 7.9E-05 36.4 11.0 81 81-166 445-532 (652)
433 PRK06893 DNA replication initi 91.3 0.32 6.9E-06 37.0 4.0 36 52-90 40-75 (229)
434 PF08423 Rad51: Rad51; InterP 91.2 0.41 8.9E-06 37.1 4.6 50 43-92 25-82 (256)
435 PRK10867 signal recognition pa 91.2 3.6 7.8E-05 34.5 10.4 58 53-116 102-161 (433)
436 cd00079 HELICc Helicase superf 91.2 3.1 6.7E-05 27.7 8.6 75 81-160 27-107 (131)
437 PF13671 AAA_33: AAA domain; P 91.1 0.17 3.6E-06 35.0 2.2 14 54-67 2-15 (143)
438 PRK13822 conjugal transfer cou 91.1 0.32 6.9E-06 42.8 4.2 47 52-103 225-271 (641)
439 cd00544 CobU Adenosylcobinamid 91.1 1.2 2.5E-05 32.4 6.6 46 54-105 2-47 (169)
440 PRK13700 conjugal transfer pro 91.0 0.27 5.8E-06 43.5 3.7 68 23-95 157-226 (732)
441 TIGR02238 recomb_DMC1 meiotic 91.0 1.2 2.6E-05 35.7 7.1 54 52-105 97-154 (313)
442 PLN03187 meiotic recombination 90.8 1.1 2.4E-05 36.4 6.9 25 11-35 29-53 (344)
443 PRK08903 DnaA regulatory inact 90.8 0.48 1E-05 35.7 4.6 17 51-67 42-58 (227)
444 KOG2340|consensus 90.7 1.6 3.5E-05 37.4 7.8 73 35-107 215-318 (698)
445 TIGR02928 orc1/cdc6 family rep 90.7 0.66 1.4E-05 37.5 5.6 24 52-76 41-64 (365)
446 cd02025 PanK Pantothenate kina 90.7 0.49 1.1E-05 35.8 4.5 22 54-76 2-23 (220)
447 PRK06067 flagellar accessory p 90.7 1 2.3E-05 34.1 6.4 51 51-105 25-75 (234)
448 PRK09694 helicase Cas3; Provis 90.6 1.8 3.9E-05 39.5 8.7 75 81-158 559-647 (878)
449 COG5008 PilU Tfp pilus assembl 90.6 0.25 5.5E-06 38.8 2.9 22 53-75 129-150 (375)
450 PRK11664 ATP-dependent RNA hel 90.6 2.7 5.9E-05 38.1 9.8 70 83-154 213-288 (812)
451 PRK10078 ribose 1,5-bisphospho 90.6 0.21 4.5E-06 36.6 2.3 18 51-68 2-19 (186)
452 TIGR02767 TraG-Ti Ti-type conj 90.5 0.26 5.7E-06 43.1 3.2 49 52-105 212-260 (623)
453 TIGR03375 type_I_sec_LssB type 90.5 0.17 3.7E-06 44.7 2.1 27 50-78 490-516 (694)
454 TIGR02759 TraD_Ftype type IV c 90.5 0.39 8.4E-06 41.6 4.2 26 50-76 175-200 (566)
455 KOG0060|consensus 90.5 0.32 7E-06 41.9 3.6 20 47-66 457-476 (659)
456 PRK06964 DNA polymerase III su 90.5 2.1 4.6E-05 34.7 8.2 31 38-68 3-38 (342)
457 PRK12724 flagellar biosynthesi 90.4 1.4 3.1E-05 36.8 7.2 19 52-70 224-242 (432)
458 COG4626 Phage terminase-like p 90.3 2.4 5.2E-05 36.5 8.6 74 36-109 61-145 (546)
459 PRK13531 regulatory ATPase Rav 90.3 0.64 1.4E-05 39.5 5.2 27 42-68 30-56 (498)
460 COG0593 DnaA ATPase involved i 90.2 1.2 2.6E-05 37.0 6.7 41 51-92 113-153 (408)
461 PRK14729 miaA tRNA delta(2)-is 90.2 0.22 4.7E-06 39.7 2.3 17 52-68 5-21 (300)
462 PHA02244 ATPase-like protein 90.2 0.44 9.6E-06 39.1 4.1 22 46-67 114-135 (383)
463 CHL00181 cbbX CbbX; Provisiona 90.2 0.85 1.8E-05 36.0 5.6 19 51-69 59-77 (287)
464 PHA00729 NTP-binding motif con 90.2 1 2.2E-05 34.3 5.8 16 52-67 18-33 (226)
465 PLN03232 ABC transporter C fam 90.0 0.56 1.2E-05 45.3 5.2 27 50-78 1261-1287(1495)
466 PHA03372 DNA packaging termina 89.9 5.2 0.00011 35.1 10.3 114 52-170 203-320 (668)
467 PRK06090 DNA polymerase III su 89.9 2.2 4.8E-05 34.3 7.8 32 37-68 4-42 (319)
468 COG1121 ZnuC ABC-type Mn/Zn tr 89.9 1.2 2.6E-05 34.6 6.1 27 146-172 154-184 (254)
469 PRK12402 replication factor C 89.8 1.1 2.3E-05 35.7 6.1 16 53-68 38-53 (337)
470 PF06309 Torsin: Torsin; Inte 89.8 2.2 4.8E-05 29.5 6.7 55 52-106 52-113 (127)
471 TIGR02881 spore_V_K stage V sp 89.7 0.24 5.1E-06 38.4 2.1 17 52-68 43-59 (261)
472 PF03193 DUF258: Protein of un 89.7 0.58 1.3E-05 33.8 4.0 44 23-66 2-50 (161)
473 PRK00131 aroK shikimate kinase 89.7 0.26 5.6E-06 35.2 2.2 20 49-68 2-21 (175)
474 PRK08058 DNA polymerase III su 89.7 2.6 5.7E-05 33.9 8.1 17 52-68 29-45 (329)
475 PRK14953 DNA polymerase III su 89.7 2.3 5E-05 36.2 8.1 24 147-170 117-140 (486)
476 cd01394 radB RadB. The archaea 89.7 0.69 1.5E-05 34.6 4.6 36 51-89 19-54 (218)
477 TIGR00150 HI0065_YjeE ATPase, 89.6 0.44 9.4E-06 33.3 3.2 43 49-97 20-62 (133)
478 PLN02165 adenylate isopentenyl 89.6 0.3 6.5E-06 39.4 2.7 20 50-69 42-61 (334)
479 TIGR03744 traC_PFL_4706 conjug 89.6 0.62 1.4E-05 42.6 5.0 24 51-74 475-498 (893)
480 PLN03186 DNA repair protein RA 89.6 1.2 2.6E-05 36.2 6.1 24 12-35 27-50 (342)
481 KOG2228|consensus 89.5 1.9 4.1E-05 35.1 7.0 17 51-67 49-65 (408)
482 KOG1533|consensus 89.4 0.36 7.9E-06 37.1 2.8 23 54-77 5-27 (290)
483 COG0324 MiaA tRNA delta(2)-iso 89.4 0.37 8.1E-06 38.4 3.0 22 54-76 6-27 (308)
484 PRK05800 cobU adenosylcobinami 89.4 2.7 5.7E-05 30.5 7.3 17 52-68 2-18 (170)
485 PRK14530 adenylate kinase; Pro 89.4 0.3 6.5E-06 36.6 2.4 19 50-68 2-20 (215)
486 COG3972 Superfamily I DNA and 89.3 0.7 1.5E-05 39.3 4.6 80 24-106 151-230 (660)
487 PTZ00243 ABC transporter; Prov 89.3 0.36 7.9E-06 46.7 3.4 18 50-67 1335-1352(1560)
488 TIGR00957 MRP_assoc_pro multi 89.3 0.49 1.1E-05 45.7 4.2 26 50-77 1311-1336(1522)
489 PF05673 DUF815: Protein of un 89.2 4.7 0.0001 31.2 8.7 71 47-124 45-118 (249)
490 COG0552 FtsY Signal recognitio 89.2 5 0.00011 32.4 9.2 80 53-139 141-227 (340)
491 TIGR00176 mobB molybdopterin-g 89.2 0.96 2.1E-05 32.3 4.8 34 54-90 2-35 (155)
492 KOG1015|consensus 89.1 2 4.4E-05 39.5 7.5 55 51-108 696-753 (1567)
493 cd00227 CPT Chloramphenicol (C 89.0 0.35 7.5E-06 35.0 2.5 18 51-68 2-19 (175)
494 PF14532 Sigma54_activ_2: Sigm 89.0 0.65 1.4E-05 32.2 3.7 22 47-68 17-38 (138)
495 PRK08118 topology modulation p 89.0 0.32 6.9E-06 35.2 2.2 16 52-67 2-17 (167)
496 PTZ00361 26 proteosome regulat 89.0 0.26 5.5E-06 41.4 1.9 19 50-68 216-234 (438)
497 PF00625 Guanylate_kin: Guanyl 89.0 0.59 1.3E-05 34.0 3.7 17 51-67 2-18 (183)
498 KOG0055|consensus 88.9 0.3 6.5E-06 45.5 2.4 52 29-82 990-1045(1228)
499 PRK14737 gmk guanylate kinase; 88.9 1.1 2.3E-05 33.1 5.0 17 51-67 4-20 (186)
500 TIGR02688 conserved hypothetic 88.9 0.49 1.1E-05 39.5 3.5 24 46-69 204-227 (449)
No 1
>KOG0330|consensus
Probab=100.00 E-value=4.7e-37 Score=241.03 Aligned_cols=163 Identities=25% Similarity=0.343 Sum_probs=151.9
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
.+...+|.+++++|++++++++.||..||++|+++||.++.|+|++..|.||||||.+|++|+++++..++..++++|++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLt 136 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLT 136 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEec
Confidence 45667899999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE----eecC-----ccCCCCceEEEEeCC--
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVNY-----ETNLSGVVVNVMDVR-- 158 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~~-----~~~~~~~~~lVlDEa-- 158 (175)
||||||.|+.++++.+.... |+++..+.||.+...+...+.+.+++||+ |+++ .+++.+++++|+|||
T Consensus 137 PtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred CcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh
Confidence 99999999999999999998 99999999999999999999999999999 3333 678899999999999
Q ss_pred --CCCCHHHHHHHHhhh
Q psy1539 159 --SGGWWLDLEALILSK 173 (175)
Q Consensus 159 --d~~f~~~v~~il~~~ 173 (175)
|+.|.++++.||+..
T Consensus 216 lLd~dF~~~ld~ILk~i 232 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVI 232 (476)
T ss_pred hhhhhhHHHHHHHHHhc
Confidence 689999999998753
No 2
>KOG0331|consensus
Probab=100.00 E-value=1.9e-36 Score=248.50 Aligned_cols=159 Identities=25% Similarity=0.346 Sum_probs=149.2
Q ss_pred cccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc------CCCCeEEEE
Q psy1539 14 KVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET------TDSNVYVLV 87 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~li 87 (175)
..|++++++++..++++..||..|||||.++||.++.|+|++..|.||||||++|++|++.++.. ..++|++||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999975 356899999
Q ss_pred EecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecCccCCCCceEEEEeCC-
Q psy1539 88 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYETNLSGVVVNVMDVR- 158 (175)
Q Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~~~~~~~~lVlDEa- 158 (175)
|+||||||.|+.+.+..+.+.. .+++.+++||.+...|.+.++++++++|+ +.....+++++.|+|+|||
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 9999999999999999999988 89999999999999999999999999999 4444889999999999999
Q ss_pred ---CCCCHHHHHHHHhhh
Q psy1539 159 ---SGGWWLDLEALILSK 173 (175)
Q Consensus 159 ---d~~f~~~v~~il~~~ 173 (175)
|+||.+||+.|+.+.
T Consensus 250 rMldmGFe~qI~~Il~~i 267 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQI 267 (519)
T ss_pred hhhccccHHHHHHHHHhc
Confidence 699999999999865
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-34 Score=242.61 Aligned_cols=159 Identities=33% Similarity=0.460 Sum_probs=144.3
Q ss_pred cccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc--CCCCeEEEEEecC
Q psy1539 14 KVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET--TDSNVYVLVMCHT 91 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~--~~~~~~~lil~Pt 91 (175)
..|+++++++++++++.+.||..|||+|.++||.++.|+|+++.|+||||||++|++|+++++.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999873 2222229999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE----eec----CccCCCCceEEEEeCC----C
Q psy1539 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVN----YETNLSGVVVNVMDVR----S 159 (175)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~----~~~~~~~~~~lVlDEa----d 159 (175)
||||.|+++.++.+....+++++..++||.+...+.+.++.+++++|+ +++ ..+++++++++|+||| |
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999876568999999999999999999999999999 222 2689999999999999 6
Q ss_pred CCCHHHHHHHHhh
Q psy1539 160 GGWWLDLEALILS 172 (175)
Q Consensus 160 ~~f~~~v~~il~~ 172 (175)
+||.+|++.|+..
T Consensus 189 ~Gf~~~i~~I~~~ 201 (513)
T COG0513 189 MGFIDDIEKILKA 201 (513)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999864
No 4
>KOG0348|consensus
Probab=100.00 E-value=6.8e-35 Score=236.44 Aligned_cols=158 Identities=27% Similarity=0.365 Sum_probs=144.4
Q ss_pred cccccCCCCHHHHHHHhhC-CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC------CCCeEEE
Q psy1539 14 KVLSSRNRREKEDRIGESQ-PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT------DSNVYVL 86 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~~-g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~------~~~~~~l 86 (175)
..|.++||++.+...|+.. ++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+... ..|+.||
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 3489999999999998764 89999999999999999999999999999999999999999988632 5789999
Q ss_pred EEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE----eecC-----ccCCCCceEEEEeC
Q psy1539 87 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVNY-----ETNLSGVVVNVMDV 157 (175)
Q Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~~-----~~~~~~~~~lVlDE 157 (175)
||+||||||.|+|+.++++.+.+.++..+.+.||...+.+..++++|++|+|+ ++++ .+.+++++++|+||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 99999999999999999999988677789999999999999999999999999 4444 67889999999999
Q ss_pred C----CCCCHHHHHHHHh
Q psy1539 158 R----SGGWWLDLEALIL 171 (175)
Q Consensus 158 a----d~~f~~~v~~il~ 171 (175)
| |.||..||..||.
T Consensus 296 aDrlleLGfekdit~Il~ 313 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILK 313 (708)
T ss_pred hhHHHhccchhhHHHHHH
Confidence 9 5899999999985
No 5
>KOG0338|consensus
Probab=100.00 E-value=5.5e-35 Score=235.94 Aligned_cols=159 Identities=29% Similarity=0.431 Sum_probs=146.9
Q ss_pred ccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC---CCeEEEEEe
Q psy1539 13 VKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD---SNVYVLVMC 89 (175)
Q Consensus 13 ~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~ 89 (175)
-.+|.+|+|+.++++++..+||..|||+|..+||..+.|+|++.||.||||||.||++|++.++...+ ...++|||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 45799999999999999999999999999999999999999999999999999999999999986442 356899999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE----eecC-----ccCCCCceEEEEeCCC-
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVNY-----ETNLSGVVVNVMDVRS- 159 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~~-----~~~~~~~~~lVlDEad- 159 (175)
|||||+.|++++.++++... ++.++++.||.+.+.|...|++.++|+|+ +++| .+.++++..+|+||||
T Consensus 260 PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999999999999988 89999999999999999999999999999 4444 6889999999999995
Q ss_pred ---CCCHHHHHHHHhh
Q psy1539 160 ---GGWWLDLEALILS 172 (175)
Q Consensus 160 ---~~f~~~v~~il~~ 172 (175)
.||.+++++||..
T Consensus 339 MLeegFademnEii~l 354 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRL 354 (691)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6899999999864
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-33 Score=232.55 Aligned_cols=160 Identities=28% Similarity=0.350 Sum_probs=143.1
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-------CCCeE
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-------DSNVY 84 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-------~~~~~ 84 (175)
...+|++++|++.+++++.+.||..|||+|.+|||.+++|+|++++||||||||++|++|+++.+... ..+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 34689999999999999999999999999999999999999999999999999999999999988532 23579
Q ss_pred EEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEe
Q psy1539 85 VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMD 156 (175)
Q Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlD 156 (175)
+||++|||+||.|+++.++.+.+.. ++++..++||.+...+.+.+.++++++|++ .+..+.+++++++|+|
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 9999999999999999999999887 999999999998888888888889999992 2236678999999999
Q ss_pred CC----CCCCHHHHHHHHhh
Q psy1539 157 VR----SGGWWLDLEALILS 172 (175)
Q Consensus 157 Ea----d~~f~~~v~~il~~ 172 (175)
|| +.+|..+++.|+..
T Consensus 165 Ead~l~~~~f~~~i~~i~~~ 184 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRR 184 (423)
T ss_pred cHHHHhhcccHHHHHHHHHh
Confidence 99 46899999888754
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.8e-33 Score=237.52 Aligned_cols=166 Identities=25% Similarity=0.303 Sum_probs=148.4
Q ss_pred CCcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-----C
Q psy1539 6 GMFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----D 80 (175)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-----~ 80 (175)
+...+.+..+|+++++++.++++|.+.||.+|||+|.++||.+++|+|++++||||||||++|++|++.++... .
T Consensus 122 g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~ 201 (545)
T PTZ00110 122 GENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYG 201 (545)
T ss_pred CCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCC
Confidence 44557888999999999999999999999999999999999999999999999999999999999999887542 3
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVV 152 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~ 152 (175)
.++++|||+||||||.|+.+.++++.... ++++..++||.+...+...+.++++|+|++ .+....++++++
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 47899999999999999999999998877 899999999999888888999999999992 223567889999
Q ss_pred EEEeCC----CCCCHHHHHHHHhh
Q psy1539 153 NVMDVR----SGGWWLDLEALILS 172 (175)
Q Consensus 153 lVlDEa----d~~f~~~v~~il~~ 172 (175)
+|+||| +++|..+++.|+..
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHh
Confidence 999999 57899999998754
No 8
>KOG0345|consensus
Probab=100.00 E-value=2.1e-33 Score=224.86 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=138.9
Q ss_pred ccccC--CCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-----CCCeEEEE
Q psy1539 15 VLSSR--NRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLV 87 (175)
Q Consensus 15 ~~~~~--~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~li 87 (175)
.|+++ +|++++++++.+.||..+||+|..+||.+++++|+++.|+||||||+||++|++..+.+. +....++|
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 45555 456999999999999999999999999999999999999999999999999999998432 22357999
Q ss_pred EecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhc-CCCeEEE-------eecC---ccCCCCceEEEEe
Q psy1539 88 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT-HNPQIVG-------LVNY---ETNLSGVVVNVMD 156 (175)
Q Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~-~~~iiv~-------l~~~---~~~~~~~~~lVlD 156 (175)
|+|||||+.|+.+++..|...++++++.+++||.+..++.+.+++ ++.|+|| ++++ .+++.++.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999999999889999999999999999988776 5568888 3333 3566799999999
Q ss_pred CC----CCCCHHHHHHHHhh
Q psy1539 157 VR----SGGWWLDLEALILS 172 (175)
Q Consensus 157 Ea----d~~f~~~v~~il~~ 172 (175)
|| |+||..+++.||..
T Consensus 165 EADrLldmgFe~~~n~ILs~ 184 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSF 184 (567)
T ss_pred chHhHhcccHHHHHHHHHHh
Confidence 99 79999999999864
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.8e-33 Score=234.57 Aligned_cols=166 Identities=25% Similarity=0.296 Sum_probs=147.8
Q ss_pred CCcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc-------
Q psy1539 6 GMFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET------- 78 (175)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~------- 78 (175)
+...+.+..+|+++++++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++.++..
T Consensus 113 g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~ 192 (518)
T PLN00206 113 GEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPS 192 (518)
T ss_pred CCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccc
Confidence 4456788999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecCccCCCCc
Q psy1539 79 TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYETNLSGV 150 (175)
Q Consensus 79 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~~~~~~ 150 (175)
...++++||++|||+||.|+.+.++.+.+.. ++++..++||.....+...+.++++++|+ +.++...++++
T Consensus 193 ~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 193 EQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchhe
Confidence 2357899999999999999999999998877 78899999999888888889899999999 33336778999
Q ss_pred eEEEEeCCC----CCCHHHHHHHHhh
Q psy1539 151 VVNVMDVRS----GGWWLDLEALILS 172 (175)
Q Consensus 151 ~~lVlDEad----~~f~~~v~~il~~ 172 (175)
+++|+|||| .+|.+++..|+..
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~ 297 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQA 297 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHh
Confidence 999999994 6899999888753
No 10
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6e-33 Score=230.64 Aligned_cols=159 Identities=31% Similarity=0.430 Sum_probs=144.9
Q ss_pred cccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 14 KVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
.+|++++|++.+++++.++||..|||+|.+|||.+++|+|++++||||||||++|++|+++++......++++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999999876656779999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEeCC----CCC
Q psy1539 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMDVR----SGG 161 (175)
Q Consensus 94 L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlDEa----d~~ 161 (175)
|+.|+.+.++.+....+++++..++||.+...+.+.+..+++++|++ .+....+++++++|+||| +++
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 99999999999988766899999999999999999999999999992 223567889999999999 578
Q ss_pred CHHHHHHHHhh
Q psy1539 162 WWLDLEALILS 172 (175)
Q Consensus 162 f~~~v~~il~~ 172 (175)
|..+++.++..
T Consensus 164 ~~~~l~~i~~~ 174 (460)
T PRK11776 164 FQDAIDAIIRQ 174 (460)
T ss_pred cHHHHHHHHHh
Confidence 99999988754
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-32 Score=235.27 Aligned_cols=161 Identities=27% Similarity=0.370 Sum_probs=146.3
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
...+|++++|+++++++|.++||..|||+|.++||.+++|+|++++||||||||++|.+|+++.+.....++++||++||
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PT 83 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPT 83 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCc
Confidence 34569999999999999999999999999999999999999999999999999999999999998766667899999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEeCCC----
Q psy1539 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMDVRS---- 159 (175)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlDEad---- 159 (175)
++|+.|+.+.+..+.+..+++++..++||.+...+.+.+..+++|||++ .+..+.+++++++|+||||
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~ 163 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR 163 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh
Confidence 9999999999999988877899999999999888999999999999992 2235678999999999994
Q ss_pred CCCHHHHHHHHhh
Q psy1539 160 GGWWLDLEALILS 172 (175)
Q Consensus 160 ~~f~~~v~~il~~ 172 (175)
++|.+++..|+..
T Consensus 164 ~gf~~di~~Il~~ 176 (629)
T PRK11634 164 MGFIEDVETIMAQ 176 (629)
T ss_pred cccHHHHHHHHHh
Confidence 7899999998854
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.2e-32 Score=224.32 Aligned_cols=157 Identities=32% Similarity=0.434 Sum_probs=140.0
Q ss_pred ccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC------CCeEEEEE
Q psy1539 15 VLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD------SNVYVLVM 88 (175)
Q Consensus 15 ~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~------~~~~~lil 88 (175)
+|++++|+++++++|.+.||..|||+|.++||.+++|+|+++++|||||||++|++|+++.+.... ..+++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 588999999999999999999999999999999999999999999999999999999999886431 23589999
Q ss_pred ecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCC--
Q psy1539 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVR-- 158 (175)
Q Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEa-- 158 (175)
+||++||.|+.+.++.+.+.. ++++..++||.+.+.+...+..+++|+|++. .....+++++++|+|||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 999999999999999998887 8999999999998888888888899999922 23567899999999999
Q ss_pred --CCCCHHHHHHHHhh
Q psy1539 159 --SGGWWLDLEALILS 172 (175)
Q Consensus 159 --d~~f~~~v~~il~~ 172 (175)
+.+|..+++.++..
T Consensus 161 ll~~~~~~~i~~il~~ 176 (456)
T PRK10590 161 MLDMGFIHDIRRVLAK 176 (456)
T ss_pred HhccccHHHHHHHHHh
Confidence 46898999888753
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.7e-32 Score=228.58 Aligned_cols=157 Identities=27% Similarity=0.372 Sum_probs=140.4
Q ss_pred ccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-------CCCeEEEE
Q psy1539 15 VLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-------DSNVYVLV 87 (175)
Q Consensus 15 ~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-------~~~~~~li 87 (175)
.|++++|++.++++|.+.||..|||+|.++||.+++|+|+++++|||||||++|++|+++++... ..++++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 59999999999999999999999999999999999999999999999999999999999987532 23579999
Q ss_pred EecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe----ec----C-ccCCCCceEEEEeCC
Q psy1539 88 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL----VN----Y-ETNLSGVVVNVMDVR 158 (175)
Q Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l----~~----~-~~~~~~~~~lVlDEa 158 (175)
|+||++|+.|+++.++++.... ++++..++|+.+...+.+.+.++++|||++ .+ . .+.+++++++|+|||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999887 899999999999888888888888999992 22 1 356789999999999
Q ss_pred ----CCCCHHHHHHHHhh
Q psy1539 159 ----SGGWWLDLEALILS 172 (175)
Q Consensus 159 ----d~~f~~~v~~il~~ 172 (175)
+.+|..+++.|+..
T Consensus 169 h~lld~gf~~~i~~il~~ 186 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRR 186 (572)
T ss_pred HHHhhcchHHHHHHHHHh
Confidence 46899999988753
No 14
>KOG0342|consensus
Probab=99.98 E-value=2.4e-32 Score=219.68 Aligned_cols=159 Identities=27% Similarity=0.377 Sum_probs=145.9
Q ss_pred ccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC----CCCeEEEEE
Q psy1539 13 VKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYVLVM 88 (175)
Q Consensus 13 ~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil 88 (175)
...|++..|++..+++++++||..+|++|+.++|.++.|+|+++.|.||||||+||++|+++.+... .++..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 4568889999999999999999999999999999999999999999999999999999999988642 567889999
Q ss_pred ecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE----eecC-----ccCCCCceEEEEeCC-
Q psy1539 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVNY-----ETNLSGVVVNVMDVR- 158 (175)
Q Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~~-----~~~~~~~~~lVlDEa- 158 (175)
+||||||.|++.+++.+.++++++.+..+.||.+...+.+.+.++|+++|+ |.++ .+.+.+++++|+|||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999998899999999999999999999999999999 4444 466778899999999
Q ss_pred ---CCCCHHHHHHHHh
Q psy1539 159 ---SGGWWLDLEALIL 171 (175)
Q Consensus 159 ---d~~f~~~v~~il~ 171 (175)
|+||.+|++.|+.
T Consensus 241 rlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIK 256 (543)
T ss_pred hhhhcccHHHHHHHHH
Confidence 6899999999985
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.98 E-value=6.3e-31 Score=217.10 Aligned_cols=156 Identities=25% Similarity=0.360 Sum_probs=140.0
Q ss_pred ccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC----CCCeEEEEEec
Q psy1539 15 VLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYVLVMCH 90 (175)
Q Consensus 15 ~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil~P 90 (175)
.|+++++++.+++++.+.||..||++|.++||.+++|+|+++++|||+|||++|++|+++++... ...+++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999987532 23468999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCC----
Q psy1539 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVR---- 158 (175)
Q Consensus 91 t~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEa---- 158 (175)
|++|+.|+.+.++.+.... ++++..++||.....+...+.++++++|++. +..+.+++++++|+|||
T Consensus 82 t~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 9999999999999999887 8999999999998888888888889999922 23567889999999999
Q ss_pred CCCCHHHHHHHHh
Q psy1539 159 SGGWWLDLEALIL 171 (175)
Q Consensus 159 d~~f~~~v~~il~ 171 (175)
+++|..++..|..
T Consensus 161 ~~~~~~~~~~i~~ 173 (434)
T PRK11192 161 DMGFAQDIETIAA 173 (434)
T ss_pred CCCcHHHHHHHHH
Confidence 4789999988864
No 16
>KOG0335|consensus
Probab=99.97 E-value=2.8e-32 Score=221.07 Aligned_cols=165 Identities=21% Similarity=0.247 Sum_probs=149.6
Q ss_pred CcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-------
Q psy1539 7 MFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT------- 79 (175)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~------- 79 (175)
..-+++...|++-.+...+..+++..||..|||+|+.+||.+..|+|++++|+||||||.+|++|++.++...
T Consensus 67 ~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~ 146 (482)
T KOG0335|consen 67 RDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGE 146 (482)
T ss_pred CccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcc
Confidence 3445666789999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ---CCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecCccCCC
Q psy1539 80 ---DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYETNLS 148 (175)
Q Consensus 80 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~~~~ 148 (175)
...|+++|++||||||.|+++..+++.... ++++...+||.+...+.+.+.++|+|+++ +.+..+.++
T Consensus 147 ~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~ 225 (482)
T KOG0335|consen 147 SGGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLD 225 (482)
T ss_pred cCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehh
Confidence 136899999999999999999999998877 99999999999999999999999999999 333378899
Q ss_pred CceEEEEeCC----C-CCCHHHHHHHHhh
Q psy1539 149 GVVVNVMDVR----S-GGWWLDLEALILS 172 (175)
Q Consensus 149 ~~~~lVlDEa----d-~~f~~~v~~il~~ 172 (175)
+++++||||| | ++|.++|+.|+.+
T Consensus 226 ~~k~~vLDEADrMlD~mgF~p~Ir~iv~~ 254 (482)
T KOG0335|consen 226 NCKFLVLDEADRMLDEMGFEPQIRKIVEQ 254 (482)
T ss_pred hCcEEEecchHHhhhhccccccHHHHhcc
Confidence 9999999999 5 9999999999865
No 17
>KOG0340|consensus
Probab=99.97 E-value=1.1e-31 Score=208.93 Aligned_cols=161 Identities=27% Similarity=0.339 Sum_probs=145.4
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
..+.+.|+.+||++.+.+.++++|.+.|||+|..+||.++.|+|++-+|.||||||.+|.+|++++|...+.+..++|++
T Consensus 3 ~~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 3 RKTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred ccccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee-------cC-----ccCCCCceEEEEeC
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV-------NY-----ETNLSGVVVNVMDV 157 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~-------~~-----~~~~~~~~~lVlDE 157 (175)
|||||+.|+.++|..+++.. ++++.+++||.+.-.+...|...++++|+.. .. ...+++++++|+||
T Consensus 83 PTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred chHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999988 9999999999998888888888888888811 11 35578999999999
Q ss_pred CC----CCCHHHHHHHHh
Q psy1539 158 RS----GGWWLDLEALIL 171 (175)
Q Consensus 158 ad----~~f~~~v~~il~ 171 (175)
|| ..|.++++.|..
T Consensus 162 ADrvL~~~f~d~L~~i~e 179 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEE 179 (442)
T ss_pred hhhhhccchhhHHhhhhc
Confidence 96 567777776654
No 18
>KOG0343|consensus
Probab=99.97 E-value=3.6e-32 Score=221.47 Aligned_cols=160 Identities=26% Similarity=0.350 Sum_probs=146.9
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC----CCCeEEE
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYVL 86 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~l 86 (175)
.....|++++|+..++++|++.+|..+|.+|+.+||..+.|+|++-.|.||||||+||++|+++++.+. ..|..+|
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 455679999999999999999999999999999999999999999999999999999999999998753 5688999
Q ss_pred EEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE----eecC-----ccCCCCceEEEEeC
Q psy1539 87 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVNY-----ETNLSGVVVNVMDV 157 (175)
Q Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~~-----~~~~~~~~~lVlDE 157 (175)
||+||||||.|+++++.+.++++ .+..+++.||.+.+.+..++.+ ++|+|| |++| .++.+++.++|+||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERISQ-MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhhc-CCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999998 9999999999998888888754 799999 5555 57778999999999
Q ss_pred C----CCCCHHHHHHHHhh
Q psy1539 158 R----SGGWWLDLEALILS 172 (175)
Q Consensus 158 a----d~~f~~~v~~il~~ 172 (175)
| ||||...++.|+.+
T Consensus 224 ADR~LDMGFk~tL~~Ii~~ 242 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIEN 242 (758)
T ss_pred HHHHHHHhHHHHHHHHHHh
Confidence 9 79999999999875
No 19
>KOG0346|consensus
Probab=99.97 E-value=5.9e-32 Score=215.21 Aligned_cols=160 Identities=23% Similarity=0.275 Sum_probs=138.8
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc------CCCCeEE
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET------TDSNVYV 85 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~ 85 (175)
....|+++||.+.+++++.+.||.+||-+|+.|||.+++|+|++..|.||||||.+|++|+++.+.. ...++.+
T Consensus 17 ~~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa 96 (569)
T KOG0346|consen 17 KEKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSA 96 (569)
T ss_pred hhccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccccee
Confidence 3478999999999999999999999999999999999999999999999999999999999998853 3568899
Q ss_pred EEEecCHHHHHHHHHHHHHHHhhCC-CeEEEEEECCCchHHhHHHHhcCCCeEEE----eecC-----ccCCCCceEEEE
Q psy1539 86 LVMCHTRELAFQISKEYERFSKYMS-NIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVNY-----ETNLSGVVVNVM 155 (175)
Q Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~~-----~~~~~~~~~lVl 155 (175)
+|++||||||+|++..+.++..+++ .++++-+..+.+.......+...++|+|+ ++.+ ...+..++++|+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 9999999999999999999988773 57777777676656666677777888888 2222 367789999999
Q ss_pred eCCC----CCCHHHHHHHHh
Q psy1539 156 DVRS----GGWWLDLEALIL 171 (175)
Q Consensus 156 DEad----~~f~~~v~~il~ 171 (175)
|||| +||.+|++.|..
T Consensus 177 DEADLllsfGYeedlk~l~~ 196 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRS 196 (569)
T ss_pred chhhhhhhcccHHHHHHHHH
Confidence 9995 899999998865
No 20
>KOG0333|consensus
Probab=99.97 E-value=1.3e-31 Score=217.05 Aligned_cols=169 Identities=23% Similarity=0.291 Sum_probs=155.5
Q ss_pred CccCCcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc----
Q psy1539 3 SMFGMFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET---- 78 (175)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~---- 78 (175)
++.+..-+.|+++|++.+++.++++.+.+.||..|||+|+.|||..++.+|++..+.||||||++|++|++..+..
T Consensus 234 s~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~ 313 (673)
T KOG0333|consen 234 SIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPM 313 (673)
T ss_pred eecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCc
Confidence 4556777899999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred -----CCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecCcc
Q psy1539 79 -----TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYET 145 (175)
Q Consensus 79 -----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~ 145 (175)
...+|++++++|||+|++|+.+...+|++.. +++++.++||.+..++--.+..||.++|+ |.++.+
T Consensus 314 ~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~l 392 (673)
T KOG0333|consen 314 ARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYL 392 (673)
T ss_pred chhhhcccCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHH
Confidence 2468999999999999999999999999998 99999999999999998899999999999 555577
Q ss_pred CCCCceEEEEeCC----CCCCHHHHHHHHhh
Q psy1539 146 NLSGVVVNVMDVR----SGGWWLDLEALILS 172 (175)
Q Consensus 146 ~~~~~~~lVlDEa----d~~f~~~v~~il~~ 172 (175)
-++++.++|+||| |+||.+|+..||.+
T Consensus 393 vl~qctyvvldeadrmiDmgfE~dv~~iL~~ 423 (673)
T KOG0333|consen 393 VLNQCTYVVLDEADRMIDMGFEPDVQKILEQ 423 (673)
T ss_pred HhccCceEeccchhhhhcccccHHHHHHHHh
Confidence 8899999999999 79999999999864
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=2.8e-30 Score=215.46 Aligned_cols=160 Identities=26% Similarity=0.327 Sum_probs=139.3
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC-------CCeE
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD-------SNVY 84 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~-------~~~~ 84 (175)
....|.+++|++.++++|.+.||..||++|.++|+.+++|+|+++++|||||||++|++|+++.+.... +.++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 345688999999999999999999999999999999999999999999999999999999999886532 2579
Q ss_pred EEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhc-CCCeEEEe--------ecCccCCCCceEEEE
Q psy1539 85 VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT-HNPQIVGL--------VNYETNLSGVVVNVM 155 (175)
Q Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~-~~~iiv~l--------~~~~~~~~~~~~lVl 155 (175)
+|||+||++|+.|+++.++.+.+.. ++++..++||.+...+.+.+.+ .++++|++ .+....+++++++|+
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 9999999999999999999998887 8999999999887777777654 57888882 222567889999999
Q ss_pred eCC----CCCCHHHHHHHHhh
Q psy1539 156 DVR----SGGWWLDLEALILS 172 (175)
Q Consensus 156 DEa----d~~f~~~v~~il~~ 172 (175)
||+ +.+|..+++.|+..
T Consensus 244 DEah~l~~~~~~~~l~~i~~~ 264 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQ 264 (475)
T ss_pred chHHHHHhcccHHHHHHHHHh
Confidence 999 46788889888754
No 22
>KOG0328|consensus
Probab=99.97 E-value=1.4e-31 Score=203.18 Aligned_cols=160 Identities=26% Similarity=0.362 Sum_probs=148.2
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.+.++|++|||++++++++.+.||++|+.+|++|+|.+++|+|++++|.+|+|||.+|.+.+++.+....+..+++|++|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsP 103 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSP 103 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecC
Confidence 56678999999999999999999999999999999999999999999999999999999999999887777889999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecCccCCCCceEEEEeCC----
Q psy1539 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYETNLSGVVVNVMDVR---- 158 (175)
Q Consensus 91 t~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~~~~~~~~lVlDEa---- 158 (175)
||||+.|+.+.+..++.++ ++++..+.||.+..++++.+.-|++++.| +.++.+..+.++++|+|||
T Consensus 104 TRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL 182 (400)
T KOG0328|consen 104 TRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEML 182 (400)
T ss_pred hHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHH
Confidence 9999999999999999999 99999999999999999999988888887 3333778889999999999
Q ss_pred CCCCHHHHHHHHh
Q psy1539 159 SGGWWLDLEALIL 171 (175)
Q Consensus 159 d~~f~~~v~~il~ 171 (175)
+.||.+++..|.+
T Consensus 183 ~kgfk~Qiydiyr 195 (400)
T KOG0328|consen 183 NKGFKEQIYDIYR 195 (400)
T ss_pred HhhHHHHHHHHHH
Confidence 5799999988865
No 23
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=9.2e-30 Score=207.97 Aligned_cols=161 Identities=25% Similarity=0.311 Sum_probs=142.6
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
+.+++|+++++++.+.+++.+.||..|+|+|.++|+.+++|+|+++++|||||||++|++|+++.+....++.++||++|
T Consensus 25 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 25 EIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 35788999999999999999999999999999999999999999999999999999999999998876556779999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeec--------CccCCCCceEEEEeCCC---
Q psy1539 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVN--------YETNLSGVVVNVMDVRS--- 159 (175)
Q Consensus 91 t~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~--------~~~~~~~~~~lVlDEad--- 159 (175)
|++|+.|+.+.++.+.... ++.+..+.|+....++...+.++++++|++.. ....+++++++|+||+|
T Consensus 105 t~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEML 183 (401)
T ss_pred CHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHH
Confidence 9999999999999998776 88888899999888888888888899999332 24568899999999995
Q ss_pred -CCCHHHHHHHHhh
Q psy1539 160 -GGWWLDLEALILS 172 (175)
Q Consensus 160 -~~f~~~v~~il~~ 172 (175)
.+|...+..++.+
T Consensus 184 ~~~~~~~~~~i~~~ 197 (401)
T PTZ00424 184 SRGFKGQIYDVFKK 197 (401)
T ss_pred hcchHHHHHHHHhh
Confidence 5788888777654
No 24
>KOG0339|consensus
Probab=99.97 E-value=1e-30 Score=211.30 Aligned_cols=164 Identities=24% Similarity=0.306 Sum_probs=151.8
Q ss_pred CcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-----CC
Q psy1539 7 MFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----DS 81 (175)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-----~~ 81 (175)
-.++.++++|+.+|+...+..+..+..|++|||+|.+++|..+.|+|++-.|.||||||.||+.|++.++... .+
T Consensus 216 ~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~ 295 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE 295 (731)
T ss_pred CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC
Confidence 3457899999999999999999999999999999999999999999999999999999999999999988643 57
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE----eecC----ccCCCCceEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVNY----ETNLSGVVVN 153 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~~----~~~~~~~~~l 153 (175)
+|.++|+||||+||.|++..+++|++.+ +++++.+|||.+..+|...|+.++.+||+ |++. ..+++++.+|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 8999999999999999999999999998 99999999999999999999999999999 2222 6789999999
Q ss_pred EEeCC----CCCCHHHHHHHHh
Q psy1539 154 VMDVR----SGGWWLDLEALIL 171 (175)
Q Consensus 154 VlDEa----d~~f~~~v~~il~ 171 (175)
|+||| |+||..+|++|-.
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~ 396 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQ 396 (731)
T ss_pred EEechhhhhccccHHHHHHHHh
Confidence 99999 6899999999854
No 25
>KOG0334|consensus
Probab=99.97 E-value=4.2e-30 Score=221.36 Aligned_cols=167 Identities=26% Similarity=0.337 Sum_probs=151.0
Q ss_pred CCcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-----C
Q psy1539 6 GMFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----D 80 (175)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-----~ 80 (175)
+..-+.|+++|.+-|++..++..++++||.+|+|||.+|||.++.|+|+|..|.||||||++|++|++.+...+ .
T Consensus 357 g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~g 436 (997)
T KOG0334|consen 357 GKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEG 436 (997)
T ss_pred cCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhC
Confidence 56678999999999999999999999999999999999999999999999999999999999999999877533 4
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecC-----------ccCCCC
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY-----------ETNLSG 149 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~-----------~~~~~~ 149 (175)
.||-++|++|||+|+.|+.+.+++|.+.. +++++.++||....+++..+++|++|+|++..+ ..++.+
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR 515 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRR 515 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccc
Confidence 69999999999999999999999999997 999999999999999999999999999993222 345666
Q ss_pred ceEEEEeCC----CCCCHHHHHHHHhhh
Q psy1539 150 VVVNVMDVR----SGGWWLDLEALILSK 173 (175)
Q Consensus 150 ~~~lVlDEa----d~~f~~~v~~il~~~ 173 (175)
+.++|+||| |++|.+++-.||.+.
T Consensus 516 ~t~lv~deaDrmfdmgfePq~~~Ii~nl 543 (997)
T KOG0334|consen 516 VTYLVLDEADRMFDMGFEPQITRILQNL 543 (997)
T ss_pred cceeeechhhhhheeccCcccchHHhhc
Confidence 779999999 689999998877653
No 26
>KOG0347|consensus
Probab=99.97 E-value=1.9e-30 Score=211.30 Aligned_cols=164 Identities=27% Similarity=0.338 Sum_probs=143.7
Q ss_pred CcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHhhhcC------
Q psy1539 7 MFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETT------ 79 (175)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~------ 79 (175)
..+++.++.|..++|+.+++++|.++||..||++|..++|++..| .|++-.|.||||||+||.+|+++++...
T Consensus 174 ~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e 253 (731)
T KOG0347|consen 174 DSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQE 253 (731)
T ss_pred cccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhh
Confidence 345667777999999999999999999999999999999999999 8999999999999999999999966421
Q ss_pred -----CCCeE--EEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe-------ecC--
Q psy1539 80 -----DSNVY--VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VNY-- 143 (175)
Q Consensus 80 -----~~~~~--~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l-------~~~-- 143 (175)
..+++ +||++||||||.|+.+.+..+.... ++++..++||.....|.+.+...++|+|++ +..
T Consensus 254 ~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n 332 (731)
T KOG0347|consen 254 LSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDN 332 (731)
T ss_pred hhhHHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhh
Confidence 23445 9999999999999999999999876 999999999999999999999988888882 221
Q ss_pred --ccCCCCceEEEEeCCC----CCCHHHHHHHHh
Q psy1539 144 --ETNLSGVVVNVMDVRS----GGWWLDLEALIL 171 (175)
Q Consensus 144 --~~~~~~~~~lVlDEad----~~f~~~v~~il~ 171 (175)
.-+|++++++|+|||| .|+.+++..||.
T Consensus 333 ~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~ 366 (731)
T KOG0347|consen 333 THLGNFKKVKCLVLDEADRMVEKGHFEELSKLLK 366 (731)
T ss_pred hhhhhhhhceEEEEccHHHHhhhccHHHHHHHHH
Confidence 4578999999999996 578888888875
No 27
>KOG0336|consensus
Probab=99.96 E-value=3.9e-30 Score=203.81 Aligned_cols=162 Identities=24% Similarity=0.316 Sum_probs=143.1
Q ss_pred ccccccccc-CCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc------CCCC
Q psy1539 10 GVTVKVLSS-RNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET------TDSN 82 (175)
Q Consensus 10 ~~~~~~~~~-~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~------~~~~ 82 (175)
|.|.-+|++ ++-.+++++.+.+.||.+|||+|++|||.+++|.|++..|.||+|||++|++|.+.++.. ...+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 344445655 677899999999999999999999999999999999999999999999999999887753 3578
Q ss_pred eEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecCccCCCCceEEE
Q psy1539 83 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYETNLSGVVVNV 154 (175)
Q Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~~~~~~~~lV 154 (175)
+.+|+++|||+|+.|+.-.+.++.-. +.+..+++||.+..++.+.++.+.++|++ ..+..+++..+.++|
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyn--g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYN--GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhc--CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEE
Confidence 89999999999999999888877643 88999999999999999999999999999 223368899999999
Q ss_pred EeCC----CCCCHHHHHHHHhhh
Q psy1539 155 MDVR----SGGWWLDLEALILSK 173 (175)
Q Consensus 155 lDEa----d~~f~~~v~~il~~~ 173 (175)
+||| ||||.++|+.||...
T Consensus 373 lDEADrMLDMgFEpqIrkilldi 395 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDI 395 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhc
Confidence 9999 799999999999764
No 28
>KOG0341|consensus
Probab=99.96 E-value=1e-30 Score=205.92 Aligned_cols=165 Identities=21% Similarity=0.272 Sum_probs=149.1
Q ss_pred CCcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc-------
Q psy1539 6 GMFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET------- 78 (175)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~------- 78 (175)
++--++|.++|.+|.++..+++.|++.|+.+|||+|.+-+|.+++|+|.+-.|-||||||++|.+|++.....
T Consensus 162 Gd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf 241 (610)
T KOG0341|consen 162 GDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPF 241 (610)
T ss_pred CCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcc
Confidence 4556889999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred -CCCCeEEEEEecCHHHHHHHHHHHHHHHhh-----CCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecCc
Q psy1539 79 -TDSNVYVLVMCHTRELAFQISKEYERFSKY-----MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYE 144 (175)
Q Consensus 79 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~ 144 (175)
...||..||+||+||||.|+++.+..+... +|.+++.++.||.+..++...++.|.+++|+ |....
T Consensus 242 ~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 242 ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh
Confidence 357899999999999999999998888654 3789999999999999999999999999999 23336
Q ss_pred cCCCCceEEEEeCC----CCCCHHHHHHHH
Q psy1539 145 TNLSGVVVNVMDVR----SGGWWLDLEALI 170 (175)
Q Consensus 145 ~~~~~~~~lVlDEa----d~~f~~~v~~il 170 (175)
+.+.-++++++||| |+||.+|++.|.
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF 351 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIF 351 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHH
Confidence 77889999999999 799999999985
No 29
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=8.1e-28 Score=179.57 Aligned_cols=155 Identities=28% Similarity=0.370 Sum_probs=136.1
Q ss_pred cccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC--CCCeEEEEEecCHH
Q psy1539 16 LSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT--DSNVYVLVMCHTRE 93 (175)
Q Consensus 16 ~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt~~ 93 (175)
|+++++++.+.+.+.+.|+..|+++|.++++.+.+|+|+++++|||+|||++|++|+++++... .++++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6789999999999999999999999999999999999999999999999999999999998875 56789999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCC----CC
Q psy1539 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRS----GG 161 (175)
Q Consensus 94 L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad----~~ 161 (175)
|+.|+.+.++.+.... ++++..++|+.+..+....+.++++++|++. +....+++++++|+||++ .+
T Consensus 81 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC
Confidence 9999999999998776 8899999999987777777776889999932 225677899999999994 45
Q ss_pred CHHHHHHHHh
Q psy1539 162 WWLDLEALIL 171 (175)
Q Consensus 162 f~~~v~~il~ 171 (175)
|..++..++.
T Consensus 160 ~~~~~~~~~~ 169 (203)
T cd00268 160 FEDQIREILK 169 (203)
T ss_pred hHHHHHHHHH
Confidence 7777776654
No 30
>KOG0326|consensus
Probab=99.96 E-value=5.1e-30 Score=197.61 Aligned_cols=157 Identities=30% Similarity=0.383 Sum_probs=143.0
Q ss_pred ccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 13 VKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 13 ~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
-..|+++.|.++++..+.+.||++|+|+|.++||..+.|+|++..|.+|+|||.+|.+|+++++..+.+..+++|++|||
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtr 163 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTR 163 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecc
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-------eecC-ccCCCCceEEEEeCCCC----
Q psy1539 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-------LVNY-ETNLSGVVVNVMDVRSG---- 160 (175)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-------l~~~-~~~~~~~~~lVlDEad~---- 160 (175)
|||.|+.+.++++.+.. ++++...+||++..+++-++.+.++++|+ |... ...+++..++|+||||.
T Consensus 164 elALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 164 ELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred hhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch
Confidence 99999999999999999 99999999999999999999999999998 3333 56789999999999964
Q ss_pred CCHHHHHHHH
Q psy1539 161 GWWLDLEALI 170 (175)
Q Consensus 161 ~f~~~v~~il 170 (175)
.|.+-++.++
T Consensus 243 ~F~~~~e~li 252 (459)
T KOG0326|consen 243 DFQPIVEKLI 252 (459)
T ss_pred hhhhHHHHHH
Confidence 4555555544
No 31
>KOG0337|consensus
Probab=99.96 E-value=9.3e-29 Score=196.13 Aligned_cols=158 Identities=25% Similarity=0.352 Sum_probs=144.5
Q ss_pred cccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-CCCeEEEEEecCH
Q psy1539 14 KVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTR 92 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~ 92 (175)
-.|.++||+..+++++.+.||..|||+|+.++|.+++|+|++..|.||||||.||++|+++++... ..+.++++++|||
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptr 100 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTR 100 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcH
Confidence 569999999999999999999999999999999999999999999999999999999999998643 4578999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE----eec----CccCCCCceEEEEeCCC----C
Q psy1539 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVN----YETNLSGVVVNVMDVRS----G 160 (175)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~----~~~~~~~~~~lVlDEad----~ 160 (175)
+|+.|..+.++.+++.. ++++.+++||.+..++...+..++++|++ +.. ..+.++.+.|+|+|||| +
T Consensus 101 eLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 101 ELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999988 99999999999999999999888999997 222 25778999999999995 7
Q ss_pred CCHHHHHHHHhh
Q psy1539 161 GWWLDLEALILS 172 (175)
Q Consensus 161 ~f~~~v~~il~~ 172 (175)
||.+++.+|+.+
T Consensus 180 gfqeql~e~l~r 191 (529)
T KOG0337|consen 180 GFQEQLHEILSR 191 (529)
T ss_pred hhHHHHHHHHHh
Confidence 899999999865
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.96 E-value=1.5e-27 Score=207.39 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=126.0
Q ss_pred CCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH
Q psy1539 20 NRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99 (175)
Q Consensus 20 ~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (175)
.+++++.++|++.||..||++|.++||.+++|+|+++++|||||||+||.+|+++.+..+ .+.++|||+|||+|++|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999998753 4679999999999999999
Q ss_pred HHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecC------------ccCCCCceEEEEeCCCC---CCHH
Q psy1539 100 KEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY------------ETNLSGVVVNVMDVRSG---GWWL 164 (175)
Q Consensus 100 ~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~------------~~~~~~~~~lVlDEad~---~f~~ 164 (175)
+.++++. . .++++..+.|+.+ .++.+.+++++++|++..+. ...+++++++|+||||. .|..
T Consensus 99 ~~l~~l~-~-~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~ 175 (742)
T TIGR03817 99 RAVRELT-L-RGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGS 175 (742)
T ss_pred HHHHHhc-c-CCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHH
Confidence 9999987 3 3788988888877 45556677778999882111 12378999999999963 4777
Q ss_pred HHHHHHhh
Q psy1539 165 DLEALILS 172 (175)
Q Consensus 165 ~v~~il~~ 172 (175)
++..++.+
T Consensus 176 ~~~~il~r 183 (742)
T TIGR03817 176 HVALVLRR 183 (742)
T ss_pred HHHHHHHH
Confidence 87777654
No 33
>KOG0329|consensus
Probab=99.95 E-value=2.5e-28 Score=183.54 Aligned_cols=159 Identities=55% Similarity=0.760 Sum_probs=144.2
Q ss_pred ccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 13 VKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 13 ~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
-+.|.++-|.|++++++...||.+|+++|.++||...-|.|++.+|.+|.|||..|.++-++.+.+..+...++++|.||
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtr 120 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTR 120 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccH
Confidence 34588899999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-------eec-CccCCCCceEEEEeCCC-----
Q psy1539 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-------LVN-YETNLSGVVVNVMDVRS----- 159 (175)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-------l~~-~~~~~~~~~~lVlDEad----- 159 (175)
|||-|+.+...+|.+++|++++.+++||.+++.+.+.+++.++|+|| +.+ +.+++++++++|+||+|
T Consensus 121 elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~ 200 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQ 200 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHH
Confidence 99999999999999999999999999999999999999996666666 333 37889999999999996
Q ss_pred CCCHHHHHHHHh
Q psy1539 160 GGWWLDLEALIL 171 (175)
Q Consensus 160 ~~f~~~v~~il~ 171 (175)
...+.|+++|.+
T Consensus 201 lDMrRDvQEifr 212 (387)
T KOG0329|consen 201 LDMRRDVQEIFR 212 (387)
T ss_pred HHHHHHHHHHhh
Confidence 456677777753
No 34
>KOG0327|consensus
Probab=99.94 E-value=6.6e-27 Score=183.68 Aligned_cols=162 Identities=26% Similarity=0.391 Sum_probs=141.5
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
.+.+.+|++|+|++++++.+...||.+|+.+|++||+++..|.|+.+++.+|+|||.+|.+++++.+..+....+|++++
T Consensus 22 ~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalila 101 (397)
T KOG0327|consen 22 NEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILA 101 (397)
T ss_pred HHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhc
Confidence 45567899999999999999999999999999999999999999999999999999999999999998777788999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhc-CCCeEEE-------eecC-ccCCCCceEEEEeCCC-
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT-HNPQIVG-------LVNY-ETNLSGVVVNVMDVRS- 159 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~-~~~iiv~-------l~~~-~~~~~~~~~lVlDEad- 159 (175)
|||+|+.|+..+...+.... +.++..+.||.....+...+.. +++++++ +++. .+....++++|+||||
T Consensus 102 PtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 99999999999999999888 9999999999887755555554 4666776 2222 4556679999999995
Q ss_pred ---CCCHHHHHHHHhh
Q psy1539 160 ---GGWWLDLEALILS 172 (175)
Q Consensus 160 ---~~f~~~v~~il~~ 172 (175)
.||+++++.|...
T Consensus 181 mLs~gfkdqI~~if~~ 196 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQE 196 (397)
T ss_pred hhccchHHHHHHHHHH
Confidence 6999999998754
No 35
>KOG4284|consensus
Probab=99.94 E-value=4.4e-27 Score=194.79 Aligned_cols=162 Identities=27% Similarity=0.335 Sum_probs=147.5
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
+--...|+++-|-.+++..|+..+|..||++|..|||.++.+.|++|+|..|+|||++|...+++.+......++++|++
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~ 100 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVT 100 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEe
Confidence 34456799999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-------eec-CccCCCCceEEEEeCCC--
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-------LVN-YETNLSGVVVNVMDVRS-- 159 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-------l~~-~~~~~~~~~~lVlDEad-- 159 (175)
||||++.|+.+.+..++..+.|.+|.+++||+..+.+..++++ +.|+|| |.. ..++.++++++||||||
T Consensus 101 PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL 179 (980)
T KOG4284|consen 101 PTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKL 179 (980)
T ss_pred cchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEeccHHhh
Confidence 9999999999999999998889999999999999999988877 689998 222 26889999999999995
Q ss_pred ---CCCHHHHHHHHhh
Q psy1539 160 ---GGWWLDLEALILS 172 (175)
Q Consensus 160 ---~~f~~~v~~il~~ 172 (175)
..|.++|..|+.+
T Consensus 180 ~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 180 MDTESFQDDINIIINS 195 (980)
T ss_pred hchhhHHHHHHHHHHh
Confidence 5799999988765
No 36
>KOG0350|consensus
Probab=99.93 E-value=1.3e-25 Score=181.44 Aligned_cols=146 Identities=21% Similarity=0.287 Sum_probs=125.1
Q ss_pred cccccCCCCHHHHHH----------HhhCCCCCCcHHHHHhHHHHhc---------CCcEEEEcCCCChHHHHHHHHHHH
Q psy1539 14 KVLSSRNRREKEDRI----------GESQPFREQTSFQHECIPQAVL---------GMDILCQAKSGMGKTAVFVLATLQ 74 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~----------l~~~g~~~~t~~Q~~~i~~~~~---------g~~~ii~a~TGsGKT~~~~~~~l~ 74 (175)
..|+.++.+...... +.+++.....|+|..++|.++. ++|++|.||||||||++|.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 447777776655544 8999999999999999998852 589999999999999999999999
Q ss_pred hhhcC-CCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCC-----CeEEE----eecC-
Q psy1539 75 QLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-----PQIVG----LVNY- 143 (175)
Q Consensus 75 ~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~-----~iiv~----l~~~- 143 (175)
.+... -+..+++||+||++|+.|+++.+.++.... ++.|+.+.|..+...+.+.|.+.. +|+|+ |++|
T Consensus 207 ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 207 LLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 88654 455899999999999999999999999988 999999999999988888887654 57777 5554
Q ss_pred ----ccCCCCceEEEEeCCCC
Q psy1539 144 ----ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 144 ----~~~~~~~~~lVlDEad~ 160 (175)
.+++++++|+|+||||.
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADR 306 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADR 306 (620)
T ss_pred cCCCCcchhhceEEEechHHH
Confidence 68899999999999964
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=99.93 E-value=7.7e-25 Score=191.04 Aligned_cols=149 Identities=23% Similarity=0.263 Sum_probs=123.8
Q ss_pred ccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 15 VLSSRNRREKEDRIGESQPFREQTSFQHECIPQ-AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 15 ~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~-~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
.|++++|++.+++++.+.||.+|+|+|.+|++. +.+|+|+++++|||||||++|.+|+++.+. ++.+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHH
Confidence 478899999999999999999999999999998 678999999999999999999999999886 3458999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe-------ecC-ccCCCCceEEEEeCCC----CC
Q psy1539 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VNY-ETNLSGVVVNVMDVRS----GG 161 (175)
Q Consensus 94 L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l-------~~~-~~~~~~~~~lVlDEad----~~ 161 (175)
|+.|+++.++++.. . ++++..++|+.+... +.+ ...+++|++ .++ ...+++++++|+||+| .+
T Consensus 79 La~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~--~~l-~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 79 LASEKFEEFERFEE-L-GVRVGISTGDYDSRD--EWL-GDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred HHHHHHHHHHHhhc-C-CCEEEEEeCCcCccc--ccc-CCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCc
Confidence 99999999998754 4 889999999876433 223 346899983 222 3456899999999995 45
Q ss_pred CHHHHHHHHh
Q psy1539 162 WWLDLEALIL 171 (175)
Q Consensus 162 f~~~v~~il~ 171 (175)
+...++.++.
T Consensus 154 rg~~le~il~ 163 (737)
T PRK02362 154 RGPTLEVTLA 163 (737)
T ss_pred chHHHHHHHH
Confidence 6677776654
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=99.92 E-value=2.9e-24 Score=187.01 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=125.2
Q ss_pred ccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 15 VLSSRNRREKEDRIGESQPFREQTSFQHECIPQ-AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 15 ~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~-~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
.|+++++++.+.+.+++.||..|+|+|.++++. +++|+|+++++|||||||++|.+|+++++.. .+.+++|++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHH
Confidence 467899999999999999999999999999986 7899999999999999999999999998764 3458999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee-------c-CccCCCCceEEEEeCCC----CC
Q psy1539 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV-------N-YETNLSGVVVNVMDVRS----GG 161 (175)
Q Consensus 94 L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~-------~-~~~~~~~~~~lVlDEad----~~ 161 (175)
|+.|+++.++.+. .. ++++..++|+.+... +.+ ..++++|++. + ....+++++++|+||+| .+
T Consensus 80 La~q~~~~~~~~~-~~-g~~v~~~~Gd~~~~~--~~~-~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 80 LAEEKYREFKDWE-KL-GLRVAMTTGDYDSTD--EWL-GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHh-hc-CCEEEEEeCCCCCch--hhh-ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCcc
Confidence 9999999998864 34 899999999876432 223 4578999832 2 23567899999999995 45
Q ss_pred CHHHHHHHHhh
Q psy1539 162 WWLDLEALILS 172 (175)
Q Consensus 162 f~~~v~~il~~ 172 (175)
+...++.++.+
T Consensus 155 rg~~le~il~~ 165 (720)
T PRK00254 155 RGATLEMILTH 165 (720)
T ss_pred chHHHHHHHHh
Confidence 66777777653
No 39
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.91 E-value=4.1e-24 Score=184.23 Aligned_cols=137 Identities=22% Similarity=0.273 Sum_probs=123.2
Q ss_pred CCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-----CCCeEEEEEecCHHH
Q psy1539 20 NRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVMCHTREL 94 (175)
Q Consensus 20 ~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~lil~Pt~~L 94 (175)
-|+|.+.+.+.+. |..|||.|.+|||.+.+|+|+++.||||||||+++++|++..+... ..+..+|||+|.|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3688999999988 9999999999999999999999999999999999999999998755 456899999999999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecC--ccCCCCceEEEEeCC
Q psy1539 95 AFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNY--ETNLSGVVVNVMDVR 158 (175)
Q Consensus 95 ~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~--~~~~~~~~~lVlDEa 158 (175)
.+++.+.++.+.+.+ |+.+.+.+|+++..+..+..++.++|+++ +... ...|++++++|+||.
T Consensus 86 n~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEi 158 (814)
T COG1201 86 NNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEI 158 (814)
T ss_pred HHHHHHHHHHHHHHc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehh
Confidence 999999999999998 99999999999988888888887788887 2221 567899999999999
No 40
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.91 E-value=1.3e-23 Score=181.86 Aligned_cols=139 Identities=18% Similarity=0.201 Sum_probs=114.8
Q ss_pred CCCCCCcHHHHHhHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEE-EecCHHHHHHHHHHHHHHHhhC
Q psy1539 32 QPFREQTSFQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV-MCHTRELAFQISKEYERFSKYM 109 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~-~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~li-l~Pt~~L~~q~~~~~~~~~~~~ 109 (175)
.||. |||+|.+++|.+++|+ ++++++|||||||.++.++++.. ......++.|+ ++|||+|+.|+++.++++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 4887 9999999999999998 68888999999999766555432 33344566666 6699999999999999998865
Q ss_pred C----------------------CeEEEEEECCCchHHhHHHHhcCCCeEEEeecC----cc----------------CC
Q psy1539 110 S----------------------NIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY----ET----------------NL 147 (175)
Q Consensus 110 ~----------------------~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~----~~----------------~~ 147 (175)
+ .+++..++||.+.+.+.+.+..+++|||++.++ .+ .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 2 488999999999999999999999999993322 22 26
Q ss_pred CCceEEEEeCC--CCCCHHHHHHHHhh
Q psy1539 148 SGVVVNVMDVR--SGGWWLDLEALILS 172 (175)
Q Consensus 148 ~~~~~lVlDEa--d~~f~~~v~~il~~ 172 (175)
++++++|+||| +++|.++++.|+..
T Consensus 170 ~~v~~LVLDEADLd~gF~~~l~~Il~~ 196 (844)
T TIGR02621 170 GQDALIVHDEAHLEPAFQELLKQIMNE 196 (844)
T ss_pred ccceEEEEehhhhccccHHHHHHHHHh
Confidence 88999999999 58999999999984
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.91 E-value=2.2e-23 Score=184.33 Aligned_cols=139 Identities=22% Similarity=0.244 Sum_probs=113.6
Q ss_pred CCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC------CCCeEEEEEecCHHH
Q psy1539 21 RREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT------DSNVYVLVMCHTREL 94 (175)
Q Consensus 21 l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~------~~~~~~lil~Pt~~L 94 (175)
+++.+.+.+.+ +|..|||+|.+|||.+++|+|++++||||||||++|.+|+++++... .+++++||++|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777776665 79999999999999999999999999999999999999999987532 346789999999999
Q ss_pred HHHHHHHHHHH-------H----hhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee-------cC---ccCCCCceEE
Q psy1539 95 AFQISKEYERF-------S----KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV-------NY---ETNLSGVVVN 153 (175)
Q Consensus 95 ~~q~~~~~~~~-------~----~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~-------~~---~~~~~~~~~l 153 (175)
+.|+++.+... . ...+++++..++|+.+..+..+.+.+.++|+|++. .. ...+++++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 99998876532 2 22347889999999988877778888888998822 21 1257899999
Q ss_pred EEeCCCC
Q psy1539 154 VMDVRSG 160 (175)
Q Consensus 154 VlDEad~ 160 (175)
|+||+|.
T Consensus 177 VIDE~H~ 183 (876)
T PRK13767 177 IVDEIHS 183 (876)
T ss_pred EEechhh
Confidence 9999963
No 42
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.91 E-value=3.2e-23 Score=181.70 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=130.1
Q ss_pred CHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH
Q psy1539 22 REKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 22 ~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
...+..++.+.|...++++|.+|+..+.+|+|++|++|||||||.+|++|+++++..+... ++|+|.||++|++.+.+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 4456888889999999999999999999999999999999999999999999999876554 899999999999999999
Q ss_pred HHHHHhhCC-CeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecC----ccCCCCceEEEEeCC---CCCCHHH
Q psy1539 102 YERFSKYMS-NIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNY----ETNLSGVVVNVMDVR---SGGWWLD 165 (175)
Q Consensus 102 ~~~~~~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~----~~~~~~~~~lVlDEa---d~~f~~~ 165 (175)
++++...++ ++++..+.|++...+....+.+.++|+++ ++++ ...+++++++|+||+ +..|..+
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~ 214 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSE 214 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhH
Confidence 999999985 58889999999876666778887888888 2222 456778999999999 4678899
Q ss_pred HHHHHhh
Q psy1539 166 LEALILS 172 (175)
Q Consensus 166 v~~il~~ 172 (175)
|..++++
T Consensus 215 vA~llRR 221 (851)
T COG1205 215 VALLLRR 221 (851)
T ss_pred HHHHHHH
Confidence 9888875
No 43
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=4.3e-23 Score=149.39 Aligned_cols=133 Identities=26% Similarity=0.397 Sum_probs=109.9
Q ss_pred cHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEE
Q psy1539 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 117 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~ 117 (175)
||+|.++++.+.+|+++++.+|||+|||++|.+|+++.+... +..++++++|+++|++|+.+.++++.... ++++..+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNT-NVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccc-ccccccc
Confidence 799999999999999999999999999999999999988775 44599999999999999999999998874 7899999
Q ss_pred ECCCchH-HhHHHHhcCCCeEEEeec--------CccCCCCceEEEEeCCC----CCCHHHHHHHHhh
Q psy1539 118 FGGLPIQ-KDEEYLKTHNPQIVGLVN--------YETNLSGVVVNVMDVRS----GGWWLDLEALILS 172 (175)
Q Consensus 118 ~g~~~~~-~~~~~l~~~~~iiv~l~~--------~~~~~~~~~~lVlDEad----~~f~~~v~~il~~ 172 (175)
+|+.+.. .....+.++++++|+... ...++.+++++|+||+| ..|...+..|+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH
Confidence 9998865 444455567899998222 12366779999999993 3667777777654
No 44
>KOG0332|consensus
Probab=99.90 E-value=3.2e-24 Score=168.35 Aligned_cols=158 Identities=21% Similarity=0.283 Sum_probs=134.0
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEE
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 88 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (175)
...++|++++|.|++++++..++|.+|+.+|..|+|.++.. +|++.++.+|+|||.||.+.++.+.......|+++.|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCL 166 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICL 166 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceee
Confidence 46788999999999999999999999999999999999986 8999999999999999999999999988888999999
Q ss_pred ecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-------eec--CccCCCCceEEEEeCCC
Q psy1539 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-------LVN--YETNLSGVVVNVMDVRS 159 (175)
Q Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-------l~~--~~~~~~~~~~lVlDEad 159 (175)
+||||||.|..+++.++++.. +++.....-|...+.. +.+ ..+|+++ +.. ..++++.++.+|+||||
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD 242 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD 242 (477)
T ss_pred CchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhceEEEecchh
Confidence 999999999999999999988 8888887776632221 112 2467777 222 25778899999999994
Q ss_pred -----CCCHHHHHHHHhh
Q psy1539 160 -----GGWWLDLEALILS 172 (175)
Q Consensus 160 -----~~f~~~v~~il~~ 172 (175)
.||.++--.|+..
T Consensus 243 ~Mi~tqG~~D~S~rI~~~ 260 (477)
T KOG0332|consen 243 VMIDTQGFQDQSIRIMRS 260 (477)
T ss_pred hhhhcccccccchhhhhh
Confidence 6888887776654
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=99.90 E-value=1.1e-22 Score=176.18 Aligned_cols=148 Identities=15% Similarity=0.165 Sum_probs=121.1
Q ss_pred ccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHH
Q psy1539 15 VLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 94 (175)
Q Consensus 15 ~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 94 (175)
.|+++++++++++.+.+.+|. ++++|.++++.+.+|+|+++++|||||||+++.+++++.+.. +.++++++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHH
Confidence 477899999999999999986 999999999999999999999999999999999999988764 3589999999999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee-------cC-ccCCCCceEEEEeCCC----CCC
Q psy1539 95 AFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV-------NY-ETNLSGVVVNVMDVRS----GGW 162 (175)
Q Consensus 95 ~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~-------~~-~~~~~~~~~lVlDEad----~~f 162 (175)
+.|+++.++++.. . +.++...+|+..... ..+ +.++++|++. ++ ...+++++++|+||+| .++
T Consensus 78 a~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~--~~~-~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~r 152 (674)
T PRK01172 78 AMEKYEELSRLRS-L-GMRVKISIGDYDDPP--DFI-KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDR 152 (674)
T ss_pred HHHHHHHHHHHhh-c-CCeEEEEeCCCCCCh--hhh-ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCc
Confidence 9999999998753 4 888988898875332 223 4578999833 22 3457899999999995 345
Q ss_pred HHHHHHHHh
Q psy1539 163 WLDLEALIL 171 (175)
Q Consensus 163 ~~~v~~il~ 171 (175)
...++.++.
T Consensus 153 g~~le~ll~ 161 (674)
T PRK01172 153 GPTLETVLS 161 (674)
T ss_pred cHHHHHHHH
Confidence 556666543
No 46
>KOG0344|consensus
Probab=99.88 E-value=6.7e-23 Score=168.32 Aligned_cols=160 Identities=24% Similarity=0.242 Sum_probs=124.1
Q ss_pred ccccccccc----CCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-----C
Q psy1539 10 GVTVKVLSS----RNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----D 80 (175)
Q Consensus 10 ~~~~~~~~~----~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-----~ 80 (175)
+.++.+|++ ...++.+++.+...+|..|+|+|.+|+|.+++++|++.|+|||||||++|.+|++.++... .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 677777876 6789999999999999999999999999999999999999999999999999999998532 4
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHH--hhCCCeEEEEEECCCchH-HhHHHHhcCCCeEEE-------eecC---ccCC
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFS--KYMSNIKVGVFFGGLPIQ-KDEEYLKTHNPQIVG-------LVNY---ETNL 147 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~i~v~~~~g~~~~~-~~~~~l~~~~~iiv~-------l~~~---~~~~ 147 (175)
.|.+++|+.|||+|+.|++..+.++. ... +.++..+....... ..........+++++ ++.. .+++
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 67899999999999999999999998 444 55555554432211 111122223455555 3333 4689
Q ss_pred CCceEEEEeCCCCC-----CHHHHHHHH
Q psy1539 148 SGVVVNVMDVRSGG-----WWLDLEALI 170 (175)
Q Consensus 148 ~~~~~lVlDEad~~-----f~~~v~~il 170 (175)
+++.++|+||||.. |..+...|+
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~ 314 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIY 314 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHH
Confidence 99999999999754 445666655
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.88 E-value=1.6e-21 Score=172.16 Aligned_cols=145 Identities=18% Similarity=0.177 Sum_probs=115.2
Q ss_pred CCCHHHHHHHhh-CCCCCCcHHHHHhHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 20 NRREKEDRIGES-QPFREQTSFQHECIPQAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 20 ~l~~~l~~~l~~-~g~~~~t~~Q~~~i~~~~~g------~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
+.+....+.+.+ .+| .|||+|.+||+.++++ +|++++++||||||.+|+.|++..+.. +.+++|++||+
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~ 510 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTT 510 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcH
Confidence 344566666555 578 5999999999999975 799999999999999999999988763 46999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHh---HHHHhcC-CCeEEE---eecCccCCCCceEEEEeCCCCCCHHH
Q psy1539 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTH-NPQIVG---LVNYETNLSGVVVNVMDVRSGGWWLD 165 (175)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~---~~~l~~~-~~iiv~---l~~~~~~~~~~~~lVlDEad~~f~~~ 165 (175)
+||.|+++.++++...+ ++++..++|+.+.++. .+.+.+| +++||+ +.+....+++++++|+||+|. |..+
T Consensus 511 ~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahr-fgv~ 588 (926)
T TIGR00580 511 LLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQR-FGVK 588 (926)
T ss_pred HHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccc-cchh
Confidence 99999999999988877 8899999888765443 3345554 788888 555567889999999999975 3333
Q ss_pred HHHHH
Q psy1539 166 LEALI 170 (175)
Q Consensus 166 v~~il 170 (175)
.+..+
T Consensus 589 ~~~~L 593 (926)
T TIGR00580 589 QKEKL 593 (926)
T ss_pred HHHHH
Confidence 44444
No 48
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=9.9e-22 Score=170.44 Aligned_cols=144 Identities=14% Similarity=0.163 Sum_probs=121.9
Q ss_pred cccCCCCHHHHHHHh-----hCCCCCC---cHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEE
Q psy1539 16 LSSRNRREKEDRIGE-----SQPFREQ---TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV 87 (175)
Q Consensus 16 ~~~~~l~~~l~~~l~-----~~g~~~~---t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (175)
.+.+++.+++.+.+. ..||..| +|+|.+++|.+..+++++..++||+|||++|++|++..+.... .++|
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~I 140 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHL 140 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEE
Confidence 456888999998877 6799988 9999999999999999999999999999999999998876422 4899
Q ss_pred EecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecC---------ccCCC-------Cce
Q psy1539 88 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY---------ETNLS-------GVV 151 (175)
Q Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~---------~~~~~-------~~~ 151 (175)
++||++||.|..+++..+.+.. ++++..++||.+..++.+.+ +++|++|+... .+.++ .+.
T Consensus 141 VTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~ 217 (970)
T PRK12899 141 VTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFY 217 (970)
T ss_pred EeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhccccc
Confidence 9999999999999999999988 99999999999988777665 48999992222 23444 568
Q ss_pred EEEEeCCCCCCHHH
Q psy1539 152 VNVMDVRSGGWWLD 165 (175)
Q Consensus 152 ~lVlDEad~~f~~~ 165 (175)
++|+||||..+.++
T Consensus 218 ~~IIDEADsmLiDE 231 (970)
T PRK12899 218 FAIIDEVDSILIDE 231 (970)
T ss_pred EEEEechhhhhhhc
Confidence 99999998666544
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.88 E-value=2e-21 Score=168.20 Aligned_cols=133 Identities=23% Similarity=0.308 Sum_probs=110.5
Q ss_pred HHHHHH-HhhCCCCCCcHHHHHhHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHH
Q psy1539 23 EKEDRI-GESQPFREQTSFQHECIPQAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95 (175)
Q Consensus 23 ~~l~~~-l~~~g~~~~t~~Q~~~i~~~~~g------~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (175)
..+.+. ...++| .||++|.+|++.+.++ +|+++++|||||||++|++|++..+. ++.+++|++||++||
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHH
Confidence 344444 455677 5999999999999886 48999999999999999999998875 467999999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEECCCchHHh---HHHHhcC-CCeEEE---eecCccCCCCceEEEEeCCCC
Q psy1539 96 FQISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTH-NPQIVG---LVNYETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 96 ~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~---~~~l~~~-~~iiv~---l~~~~~~~~~~~~lVlDEad~ 160 (175)
.|+++.++++.... ++++..++|+.+..+. .+.+.+| ++++|+ +++....+++++++|+||+|.
T Consensus 324 ~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 324 EQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhh
Confidence 99999999999887 8999999999885443 3445554 788888 455566789999999999974
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=1.6e-21 Score=167.67 Aligned_cols=132 Identities=24% Similarity=0.286 Sum_probs=110.5
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~~g------~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
.+.+.+..++| .||++|++|++.++++ .+.+++++||||||++|++|++..+. ++.++++++||++||.|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILAEQ 299 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHHHH
Confidence 34556778888 6999999999999876 36899999999999999999998876 45689999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEEECCCchHH---hHHHHhcC-CCeEEE---eecCccCCCCceEEEEeCCCC
Q psy1539 98 ISKEYERFSKYMSNIKVGVFFGGLPIQK---DEEYLKTH-NPQIVG---LVNYETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 98 ~~~~~~~~~~~~~~i~v~~~~g~~~~~~---~~~~l~~~-~~iiv~---l~~~~~~~~~~~~lVlDEad~ 160 (175)
+++.++++.... ++++..++|+.+.++ ..+.+.++ ++++|+ ++.....+.+++++|+||+|.
T Consensus 300 ~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 300 HYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhh
Confidence 999999998877 899999999987654 33444443 588888 444467789999999999974
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=99.88 E-value=1.7e-21 Score=175.46 Aligned_cols=135 Identities=21% Similarity=0.185 Sum_probs=105.4
Q ss_pred CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.|+ .||++|+.++|.++.|+|++++||||||||. |.++++..+.. ++.+++||+|||+|+.|+.+.++.+.... +
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~-~ 151 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKV-G 151 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhc-C
Confidence 377 7999999999999999999999999999995 55666555443 46799999999999999999999999887 8
Q ss_pred eEEEEEECCCch-----HHhHHHHhc-CCCeEEEee----cC--ccCCCCceEEEEeCCC---------------CCCH-
Q psy1539 112 IKVGVFFGGLPI-----QKDEEYLKT-HNPQIVGLV----NY--ETNLSGVVVNVMDVRS---------------GGWW- 163 (175)
Q Consensus 112 i~v~~~~g~~~~-----~~~~~~l~~-~~~iiv~l~----~~--~~~~~~~~~lVlDEad---------------~~f~- 163 (175)
+.+..++|+.+. .+..+.+.+ +++|+|++. ++ .+...+++++|+|||| +||.
T Consensus 152 ~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~ 231 (1176)
T PRK09401 152 CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSE 231 (1176)
T ss_pred ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCH
Confidence 888877776542 233445554 478999833 22 2444569999999995 5785
Q ss_pred HHHHHHHh
Q psy1539 164 LDLEALIL 171 (175)
Q Consensus 164 ~~v~~il~ 171 (175)
++++.++.
T Consensus 232 ~~i~~i~~ 239 (1176)
T PRK09401 232 EDIEKAME 239 (1176)
T ss_pred HHHHHHHH
Confidence 67877763
No 52
>PRK14701 reverse gyrase; Provisional
Probab=99.87 E-value=6.5e-21 Score=175.25 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=110.4
Q ss_pred HHHHHHhh-CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHH
Q psy1539 24 KEDRIGES-QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 102 (175)
Q Consensus 24 ~l~~~l~~-~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 102 (175)
++.+.+++ .|| .||++|++++|.+++|+|+++.||||||||++++++.+... .++.+++|++||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHHHH
Confidence 44555665 799 69999999999999999999999999999996666555432 24568999999999999999999
Q ss_pred HHHHhhC-CCeEEEEEECCCchHHhH---HHHhcC-CCeEEEeecCc------cCCCCceEEEEeCCC------------
Q psy1539 103 ERFSKYM-SNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVGLVNYE------TNLSGVVVNVMDVRS------------ 159 (175)
Q Consensus 103 ~~~~~~~-~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~l~~~~------~~~~~~~~lVlDEad------------ 159 (175)
+.+.+.. .++++..++|+.+.+++. +.+.++ ++|+|++.... ....+++++|+||||
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~ 222 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRS 222 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchh
Confidence 9998765 256778889998876653 345554 78888833321 112579999999996
Q ss_pred ---CCCHHHHHH
Q psy1539 160 ---GGWWLDLEA 168 (175)
Q Consensus 160 ---~~f~~~v~~ 168 (175)
+||.+++..
T Consensus 223 L~llGF~~e~~~ 234 (1638)
T PRK14701 223 LQLLGFYEEIIE 234 (1638)
T ss_pred hhcCCChHHHHH
Confidence 489999875
No 53
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.86 E-value=7e-21 Score=171.63 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=107.9
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
++.+.+.+.....|+++|+.++|.++.|+|++++||||||||. |.+|++..+.. .+++++|++|||+|+.|+.+.++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHH
Confidence 4455555544447999999999999999999999999999996 66777766543 46799999999999999999999
Q ss_pred HHHhhCCCeEE---EEEECCCchHHh---HHHHhc-CCCeEEEee----cCccCCC-CceEEEEeCCC------------
Q psy1539 104 RFSKYMSNIKV---GVFFGGLPIQKD---EEYLKT-HNPQIVGLV----NYETNLS-GVVVNVMDVRS------------ 159 (175)
Q Consensus 104 ~~~~~~~~i~v---~~~~g~~~~~~~---~~~l~~-~~~iiv~l~----~~~~~~~-~~~~lVlDEad------------ 159 (175)
++.... ++.+ ..++|+.+..++ .+.+.+ +++|+|++. ++...+. +++++|+||||
T Consensus 143 ~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~vd~i 221 (1171)
T TIGR01054 143 SLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNVDKL 221 (1171)
T ss_pred HHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccHHHH
Confidence 998876 5544 356788876554 334554 478999832 2222233 89999999994
Q ss_pred ---CCCHHH-HHHHH
Q psy1539 160 ---GGWWLD-LEALI 170 (175)
Q Consensus 160 ---~~f~~~-v~~il 170 (175)
+||.++ ++.|+
T Consensus 222 l~llGF~~e~i~~il 236 (1171)
T TIGR01054 222 LKLLGFSEELIEKAW 236 (1171)
T ss_pred HHHcCCCHHHHHHHH
Confidence 578764 66654
No 54
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=2e-20 Score=156.14 Aligned_cols=129 Identities=17% Similarity=0.146 Sum_probs=99.0
Q ss_pred hhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhC
Q psy1539 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 109 (175)
Q Consensus 30 ~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (175)
..+||..|+|+|.++|+.+++|+|+++.+|||||||++|.+|++.. +..+||++||++|+.|+.+.++.+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~---- 74 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS---- 74 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----
Confidence 3469999999999999999999999999999999999999999753 237999999999999987777643
Q ss_pred CCeEEEEEECCCchHHhHH---HHhcC-CCeEEE----eecC-----cc-CCCCceEEEEeCCCC------CCHHHHHHH
Q psy1539 110 SNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG----LVNY-----ET-NLSGVVVNVMDVRSG------GWWLDLEAL 169 (175)
Q Consensus 110 ~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~----l~~~-----~~-~~~~~~~lVlDEad~------~f~~~v~~i 169 (175)
++.+..+.|+....+... .+.++ .+++++ +... .+ ...+++++|+||||. .|.++...+
T Consensus 75 -gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 75 -GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 777888888776543332 23333 567766 2111 12 567899999999962 477776654
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.84 E-value=5.7e-20 Score=165.37 Aligned_cols=132 Identities=20% Similarity=0.235 Sum_probs=108.2
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~~g------~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
...+...+++| .||+.|.+||+.++++ +|++++++||+|||.+|+.++...+. ++.+++|++||++||.|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHH
Confidence 33444677778 6999999999999987 89999999999999999888876654 46799999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHh---c-CCCeEEE---eecCccCCCCceEEEEeCCCC
Q psy1539 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---T-HNPQIVG---LVNYETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 98 ~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~---~-~~~iiv~---l~~~~~~~~~~~~lVlDEad~ 160 (175)
+++.+++....+ ++++..+.|+.+.+++.+.+. + .++|+|+ +.+....+++++++|+||+|.
T Consensus 665 ~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 665 HYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhh
Confidence 999999877766 788888998887766655443 3 4788998 444456788999999999964
No 56
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.83 E-value=1.9e-19 Score=153.95 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=99.5
Q ss_pred CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
+||..++|+|.++|+.+++|+|+++++|||+|||++|.+|++.. +..++|++|+++|+.|+.+.++.+ +
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~-----g 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA-----G 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc-----C
Confidence 69999999999999999999999999999999999999999853 226899999999999988877654 7
Q ss_pred eEEEEEECCCchHHhHHH---Hhc-CCCeEEE----eecC----ccCCCCceEEEEeCCC------CCCHHHHHHH
Q psy1539 112 IKVGVFFGGLPIQKDEEY---LKT-HNPQIVG----LVNY----ETNLSGVVVNVMDVRS------GGWWLDLEAL 169 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~---l~~-~~~iiv~----l~~~----~~~~~~~~~lVlDEad------~~f~~~v~~i 169 (175)
+.+..+.++.+..+..+. +.+ ..+++++ +... .....+++++|+|||| ..|.++...+
T Consensus 78 i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 78 VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 788888888876554332 333 3566665 2221 3456789999999995 3477776655
No 57
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.82 E-value=2.4e-19 Score=158.45 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=106.7
Q ss_pred cCCCCHHHHHHHhh-CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHH
Q psy1539 18 SRNRREKEDRIGES-QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 96 (175)
Q Consensus 18 ~~~l~~~l~~~l~~-~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~ 96 (175)
.++....+...+++ +||..++|+|.++|+.++.|+|+++.+|||+|||+||.+|++.. +..+|||+|+++|++
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmq 514 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 514 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHH
Confidence 35556666666555 58999999999999999999999999999999999999999864 237999999999998
Q ss_pred HHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhc------CCCeEEE----eecC------c---cCCCCceEEEEeC
Q psy1539 97 QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT------HNPQIVG----LVNY------E---TNLSGVVVNVMDV 157 (175)
Q Consensus 97 q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~------~~~iiv~----l~~~------~---~~~~~~~~lVlDE 157 (175)
++...+.. . +++...+.|+.+..++.+.+.. ..+++++ +... . .....+.++|+||
T Consensus 515 DQV~~L~~----~-GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDE 589 (1195)
T PLN03137 515 DQIMNLLQ----A-NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDE 589 (1195)
T ss_pred HHHHHHHh----C-CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCc
Confidence 64444432 2 8899999999887766655542 4577777 2211 1 1224589999999
Q ss_pred CC----C--CCHHHHHHH
Q psy1539 158 RS----G--GWWLDLEAL 169 (175)
Q Consensus 158 ad----~--~f~~~v~~i 169 (175)
|| . .|+++.+.+
T Consensus 590 AHcVSqWGhDFRpdYr~L 607 (1195)
T PLN03137 590 AHCVSQWGHDFRPDYQGL 607 (1195)
T ss_pred chhhhhcccchHHHHHHH
Confidence 95 3 488888764
No 58
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.82 E-value=3.5e-19 Score=152.61 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=101.2
Q ss_pred CCHHHHHHHhh-CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH
Q psy1539 21 RREKEDRIGES-QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99 (175)
Q Consensus 21 l~~~l~~~l~~-~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (175)
..+...+.|++ +||..|+|+|.++++.+++|+|+++.+|||+|||++|.+|++.. ...++|++|+++|+.|+.
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHH
Confidence 33344444444 59999999999999999999999999999999999999999854 226899999999999988
Q ss_pred HHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE----eecC----ccCCCCceEEEEeCCC------CC
Q psy1539 100 KEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG----LVNY----ETNLSGVVVNVMDVRS------GG 161 (175)
Q Consensus 100 ~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~----l~~~----~~~~~~~~~lVlDEad------~~ 161 (175)
+.++.+ ++.+..+.++.+..+... .+.++ .+++++ +... .+...+++++|+|||| ..
T Consensus 83 ~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 83 DQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 877654 677777777776554433 23333 355555 2211 2334579999999996 34
Q ss_pred CHHHHHHH
Q psy1539 162 WWLDLEAL 169 (175)
Q Consensus 162 f~~~v~~i 169 (175)
|.+++..+
T Consensus 158 fr~~y~~L 165 (607)
T PRK11057 158 FRPEYAAL 165 (607)
T ss_pred ccHHHHHH
Confidence 77776544
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1e-18 Score=148.63 Aligned_cols=99 Identities=16% Similarity=0.048 Sum_probs=87.8
Q ss_pred CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.|. .|+++|..++|.+++|+ +..+.||+|||++|.+|++.... .+.+++|++||++||.|.++++..+.+.+ +
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al---~G~~v~VvTptreLA~qdae~~~~l~~~l-G 172 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL---AGLPVHVITVNDYLAERDAELMRPLYEAL-G 172 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---cCCeEEEEcCcHHHHHHHHHHHHHHHhhc-C
Confidence 344 68999999999999999 99999999999999999998765 45689999999999999999999999988 9
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEE
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVG 139 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~ 139 (175)
+++++++||.+. +.+....+++|+++
T Consensus 173 lsv~~i~gg~~~--~~r~~~y~~dIvyg 198 (656)
T PRK12898 173 LTVGCVVEDQSP--DERRAAYGADITYC 198 (656)
T ss_pred CEEEEEeCCCCH--HHHHHHcCCCEEEE
Confidence 999999999863 34555567899998
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.78 E-value=2e-18 Score=150.10 Aligned_cols=135 Identities=23% Similarity=0.270 Sum_probs=110.5
Q ss_pred cCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHH
Q psy1539 18 SRNRREKEDRIGESQPFREQTSFQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 96 (175)
Q Consensus 18 ~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~-~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~ 96 (175)
...+.+.+.+.+...|+..+.+.|+.++.... +|+|+++++|||||||+.+++.+++.+... +.+++|+||+|+||.
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~ 90 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAE 90 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHH
Confidence 34578899999999999888888888886555 569999999999999999999999998763 568999999999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-------eecC-ccCCCCceEEEEeCCC
Q psy1539 97 QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-------LVNY-ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 97 q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-------l~~~-~~~~~~~~~lVlDEad 159 (175)
|.++.++++ +.+ |++|...+|+..... +.+ .+++|||+ +.++ ......++++|+||++
T Consensus 91 Ek~~~~~~~-~~~-GirV~~~TgD~~~~~--~~l-~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH 156 (766)
T COG1204 91 EKYEEFSRL-EEL-GIRVGISTGDYDLDD--ERL-ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH 156 (766)
T ss_pred HHHHHhhhH-Hhc-CCEEEEecCCcccch--hhh-ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee
Confidence 999999955 445 999999999987433 233 35799998 3333 4466799999999994
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.76 E-value=9.2e-18 Score=141.07 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=97.3
Q ss_pred CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
...|+++|.+|++.++.+++.++++|||+|||+++...+ ..... ....++||++||++|+.|+.+.++++.... ...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~ 188 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP-REA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-cCCCeEEEEECcHHHHHHHHHHHHHhcccc-ccc
Confidence 357999999999999999999999999999998764422 22222 233489999999999999999999887543 445
Q ss_pred EEEEECCCchHHhHHHHhcCCCeEEEeecC-----ccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 114 VGVFFGGLPIQKDEEYLKTHNPQIVGLVNY-----ETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~-----~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
+..+.||.... .+.+++|++.+. ...+++++++|+||||.....+++.++..
T Consensus 189 ~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~~~~~il~~ 245 (501)
T PHA02558 189 MHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGKSLTSIITK 245 (501)
T ss_pred eeEEecCcccC-------CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccchhHHHHHHh
Confidence 55566665422 346888884443 23468999999999988777888887754
No 62
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.76 E-value=2.9e-17 Score=142.14 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=96.4
Q ss_pred CCcHHHHHhHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 36 EQTSFQHECIPQAVLG---MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g---~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
.+|+.|+++++.+.++ +++++.++||||||.+|+.++...+.. +.++|+++||++|+.|+.+.+++. + +.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~---f-g~ 216 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRAR---F-GA 216 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHH---h-CC
Confidence 5899999999999874 889999999999999999888776653 458999999999999998888764 3 67
Q ss_pred EEEEEECCCchHHhHHH---Hhc-CCCeEEEeecC-ccCCCCceEEEEeCC-CCCCH
Q psy1539 113 KVGVFFGGLPIQKDEEY---LKT-HNPQIVGLVNY-ETNLSGVVVNVMDVR-SGGWW 163 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~---l~~-~~~iiv~l~~~-~~~~~~~~~lVlDEa-d~~f~ 163 (175)
++..++|+.+..+..+. +.+ ..+++|++... ...+++++++|+||+ +.+|.
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~ 273 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYK 273 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccc
Confidence 89999999876554433 333 46888885443 456889999999999 44444
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.75 E-value=5e-18 Score=140.04 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=121.1
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQ-AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~-~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
.+--..+++++++++.+.|+..|++.+.|+|..|+.. +++|+|.+|.++|+||||+...++-+.++.. .+.+.|+++
T Consensus 191 ~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~KmlfLv 268 (830)
T COG1202 191 VERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--GGKKMLFLV 268 (830)
T ss_pred cccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--CCCeEEEEe
Confidence 3334577899999999999999999999999999975 5689999999999999999999999988875 455899999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH----HHhcCCCeEEE-------eecCccCCCCceEEEEeCC
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE----YLKTHNPQIVG-------LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~----~l~~~~~iiv~-------l~~~~~~~~~~~~lVlDEa 158 (175)
|..+||+|.++.|++-.... ++++..-+|-...+...+ .-...++|||| +++...++.++..+|+||.
T Consensus 269 PLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEi 347 (830)
T COG1202 269 PLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEI 347 (830)
T ss_pred hhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeee
Confidence 99999999999998877777 888888888765544322 11235799999 4444678899999999999
No 64
>KOG0349|consensus
Probab=99.74 E-value=2.4e-18 Score=138.07 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=72.5
Q ss_pred eEEEEEecCHHHHHHHHHHHHHHHhhC--CCeEEEEEECCCchHHhHHHHhcCCCeEEEeec--------CccCCCCceE
Q psy1539 83 VYVLVMCHTRELAFQISKEYERFSKYM--SNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVN--------YETNLSGVVV 152 (175)
Q Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~--------~~~~~~~~~~ 152 (175)
++++|+-|+|||++|.++++++|..+. |.++..++.||.....|...+.+|.+|+|+... ....+.++++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 789999999999999999999987765 677888999999889999999999999999222 2567889999
Q ss_pred EEEeCCC----CCCHHHHHHH
Q psy1539 153 NVMDVRS----GGWWLDLEAL 169 (175)
Q Consensus 153 lVlDEad----~~f~~~v~~i 169 (175)
+|+|||| .++-+-|+..
T Consensus 367 lvlDead~lL~qgy~d~I~r~ 387 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRF 387 (725)
T ss_pred EEecchhhhhhcccHHHHHHH
Confidence 9999995 4555555543
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=3.9e-17 Score=141.64 Aligned_cols=125 Identities=12% Similarity=0.082 Sum_probs=102.7
Q ss_pred CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 33 PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
|. .|+++|..+++.+.+|+ +..+.||+|||++|.+|++.... .|.+++|++||++||.|.++++..+.+.+ |+
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl 148 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFL-GL 148 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 55 79999999999998887 99999999999999999986655 45689999999999999999999999998 99
Q ss_pred EEEEEECCCchHHhHHHHhcCCCeEEEe---------ecC------ccCCCCceEEEEeCCCCCCHHH
Q psy1539 113 KVGVFFGGLPIQKDEEYLKTHNPQIVGL---------VNY------ETNLSGVVVNVMDVRSGGWWLD 165 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~~~~iiv~l---------~~~------~~~~~~~~~lVlDEad~~f~~~ 165 (175)
+++++.|+.+..++.+.. .+++|++++ .++ ....+++.++|+||||..+.++
T Consensus 149 ~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred eEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 999999998743343333 458999992 222 1355789999999998665554
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.73 E-value=4.4e-17 Score=139.79 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=104.0
Q ss_pred CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 33 PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
|. .|+++|..+.+.+.+|+ +..++||+|||++|.+|++-.... +.++.|++||++||.|..+++.++.+.+ ++
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~L-GL 126 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFL-GL 126 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccC-CC
Confidence 54 68999999999888887 999999999999999999644332 3469999999999999999999999998 99
Q ss_pred EEEEEECCCchHHhHHHHhcCCCeEEEeecC---------------ccCCCCceEEEEeCCCCCCHHHHHHH
Q psy1539 113 KVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY---------------ETNLSGVVVNVMDVRSGGWWLDLEAL 169 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~---------------~~~~~~~~~lVlDEad~~f~~~v~~i 169 (175)
++++++|+.+..+..... .++|++|+... ...++++.++|+||+|..+.++-+.-
T Consensus 127 sv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtp 196 (745)
T TIGR00963 127 SVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTP 196 (745)
T ss_pred eEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhH
Confidence 999999998865444444 47999992221 34678999999999987777555543
No 67
>KOG0952|consensus
Probab=99.72 E-value=2.9e-17 Score=142.48 Aligned_cols=124 Identities=21% Similarity=0.294 Sum_probs=101.9
Q ss_pred CCCCCCcHHHHHhHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHhhhc-------CCCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 32 QPFREQTSFQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLET-------TDSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~-g~~~ii~a~TGsGKT~~~~~~~l~~l~~-------~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
++|..++.+|++++|.+++ +.|.+||||||||||..|++.+++.+.. ..++.+++||+|+++||.++.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 4678899999999999986 5899999999999999999999998864 2567899999999999988777776
Q ss_pred HHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-------eecC----ccCCCCceEEEEeCCC
Q psy1539 104 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-------LVNY----ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 104 ~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-------l~~~----~~~~~~~~~lVlDEad 159 (175)
+-+... |++|..++|+....+.. + ..+++||. +.++ ...++.++++|+||++
T Consensus 186 kkl~~~-gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH 248 (1230)
T KOG0952|consen 186 KKLAPL-GISVRELTGDTQLTKTE--I-ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH 248 (1230)
T ss_pred hhcccc-cceEEEecCcchhhHHH--H-HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh
Confidence 665555 99999999998765443 3 24799998 2222 4567899999999993
No 68
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.72 E-value=5.2e-16 Score=113.69 Aligned_cols=139 Identities=27% Similarity=0.356 Sum_probs=105.9
Q ss_pred hCCCCCCcHHHHHhHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhC
Q psy1539 31 SQPFREQTSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 109 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (175)
..++..++++|.++++.+.++ +++++.++||+|||.++..+++..+.... ..++++++|+++++.|+.+.+..+....
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 346778999999999999999 99999999999999999999988876532 3479999999999999999988887654
Q ss_pred CCeEEEEEECCCchHHhHHHHhcCC-CeEEEeec----C----ccCCCCceEEEEeCCCC----CCHHHHHHHHh
Q psy1539 110 SNIKVGVFFGGLPIQKDEEYLKTHN-PQIVGLVN----Y----ETNLSGVVVNVMDVRSG----GWWLDLEALIL 171 (175)
Q Consensus 110 ~~i~v~~~~g~~~~~~~~~~l~~~~-~iiv~l~~----~----~~~~~~~~~lVlDEad~----~f~~~v~~il~ 171 (175)
........++....+....+.++. +++++..+ . .....+++++|+||++. .+...+..++.
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 82 -GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred -CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 323444455555455666666666 77777221 1 24556788999999953 66677777765
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.70 E-value=1.6e-16 Score=136.63 Aligned_cols=122 Identities=10% Similarity=0.101 Sum_probs=92.6
Q ss_pred cHHHHHhHHHHhcCCcEEEEcCCCChHHHH---------HHHHHHHhhh---cCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAV---------FVLATLQQLE---TTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~---------~~~~~l~~l~---~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
..+|.++++.+++|++++++|+||||||.+ |++|.+..+. ....+.++++++|||+||.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 348999999999999999999999999987 5556665543 2334568999999999999999988776
Q ss_pred Hhh--CCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecC-ccCCCCceEEEEeCCCC
Q psy1539 106 SKY--MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY-ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 106 ~~~--~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~-~~~~~~~~~lVlDEad~ 160 (175)
... +.+..+...+||.+ +.......++.++++++..- ...+++++++|+||||.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~-~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHE 302 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIP-DELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHE 302 (675)
T ss_pred hCccccCCceEEEEECCcc-hHHhhcccCCCCEEEEeCcccccccccCCEEEcccccc
Confidence 544 34677888999987 23223333356788884332 33688999999999963
No 70
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.70 E-value=1.4e-16 Score=145.32 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=84.7
Q ss_pred EEcCCCChHHHHHHHHHHHhhhcC----------CCCeEEEEEecCHHHHHHHHHHHHHHHh-----------hCCCeEE
Q psy1539 56 CQAKSGMGKTAVFVLATLQQLETT----------DSNVYVLVMCHTRELAFQISKEYERFSK-----------YMSNIKV 114 (175)
Q Consensus 56 i~a~TGsGKT~~~~~~~l~~l~~~----------~~~~~~lil~Pt~~L~~q~~~~~~~~~~-----------~~~~i~v 114 (175)
|+||||||||++|.+|++.++... .++.++|||+|+++|+.|+.+.++.... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999988642 2467999999999999999998875221 1237899
Q ss_pred EEEECCCchHHhHHHHhcCCCeEEE-------e-ecC-ccCCCCceEEEEeCCC
Q psy1539 115 GVFFGGLPIQKDEEYLKTHNPQIVG-------L-VNY-ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 115 ~~~~g~~~~~~~~~~l~~~~~iiv~-------l-~~~-~~~~~~~~~lVlDEad 159 (175)
..++|+.+.+++.+.+++.++|||+ + .++ ...+++++++|+||+|
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H 134 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVH 134 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHH
Confidence 9999999988877778878899998 2 222 3468999999999995
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.69 E-value=3.2e-16 Score=135.20 Aligned_cols=123 Identities=13% Similarity=0.015 Sum_probs=91.8
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.|+++|......+.+| .++.++||+|||++|.+|++..... +..++|++|+++||.|..+++..+.+.+ |+++.
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~ 143 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWL-GLTVS 143 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhc-CCcEE
Confidence 4455555555444444 7999999999999999998766553 4469999999999999999999999998 99999
Q ss_pred EEECCCc---hHHhHHHHhcCCCeEEEeecC---------------ccCCCCceEEEEeCCCCCCHH
Q psy1539 116 VFFGGLP---IQKDEEYLKTHNPQIVGLVNY---------------ETNLSGVVVNVMDVRSGGWWL 164 (175)
Q Consensus 116 ~~~g~~~---~~~~~~~l~~~~~iiv~l~~~---------------~~~~~~~~~lVlDEad~~f~~ 164 (175)
.++++.. ...+.+....+++|++++... ...++++.++|+||||..+.+
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD 210 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD 210 (762)
T ss_pred EEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc
Confidence 8877622 233444555679999992221 234678999999999754443
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.65 E-value=2.6e-15 Score=132.14 Aligned_cols=122 Identities=23% Similarity=0.267 Sum_probs=97.1
Q ss_pred CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
...++++|.++...++.+ |.++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.++++.... +.+
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~ 88 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--KGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEK 88 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--CCCeEEEEeCcHHHHHHHHHHHHHHhCCC-Cce
Confidence 447899999999888887 99999999999999999999887742 44589999999999999999998876432 457
Q ss_pred EEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEeCCCC
Q psy1539 114 VGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlDEad~ 160 (175)
+..+.|+.+..+.. .+..+.++++++ ......+.+++++|+|||+.
T Consensus 89 v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~ 142 (773)
T PRK13766 89 IVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR 142 (773)
T ss_pred EEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc
Confidence 88888888755443 344456888882 23356778999999999963
No 73
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.65 E-value=2.7e-15 Score=122.37 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=110.9
Q ss_pred CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
...++.+|.......+.+ |.+++.|||-|||+.+++-+..++...+ + ++|+++||+.|+.|+...++++..- |.-.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~i-p~~~ 88 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGI-PEDE 88 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCC-Chhh
Confidence 346788888887766666 9999999999999999998888877643 3 8999999999999999999998754 3668
Q ss_pred EEEEECCCchHHhHHHHhcCCCeEEE--------eecCccCCCCceEEEEeCC-----CCCCHHHHHHHHhhhc
Q psy1539 114 VGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYETNLSGVVVNVMDVR-----SGGWWLDLEALILSKC 174 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~~~~~~~~lVlDEa-----d~~f~~~v~~il~~~~ 174 (175)
++.++|..+.++....+.+ ..++++ +..+.+++.++.++|+||| ++.|..=.+..+.+++
T Consensus 89 i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 89 IAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred eeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 8899999998777777776 488888 5555899999999999999 4667666666666543
No 74
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=2.2e-15 Score=131.28 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=94.2
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.|.++|...--.+. ..-+..++||+|||++|.+|++..... +..++|++||++||.|..+++..+.+.+ ++++.
T Consensus 82 ~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~ 155 (896)
T PRK13104 82 RHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFL-GLTVG 155 (896)
T ss_pred CcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhccc-CceEE
Confidence 45666655444443 444889999999999999999977654 3469999999999999999999999988 99999
Q ss_pred EEECCCchHHhHHHHhcCCCeEEE----e----ecCc--cCC-----CCceEEEEeCCCCCCHHH
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVG----L----VNYE--TNL-----SGVVVNVMDVRSGGWWLD 165 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~----l----~~~~--~~~-----~~~~~lVlDEad~~f~~~ 165 (175)
+++||.+..+....+ .++|++| + ++.. .++ +.+.++|+||||..+.++
T Consensus 156 ~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDe 218 (896)
T PRK13104 156 VIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDE 218 (896)
T ss_pred EEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhc
Confidence 999998866655544 5799999 2 2222 223 589999999997655544
No 75
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=7.3e-15 Score=123.87 Aligned_cols=136 Identities=24% Similarity=0.268 Sum_probs=115.3
Q ss_pred CCCCHHHHHH-HhhCCCCCCcHHHHHhHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 19 RNRREKEDRI-GESQPFREQTSFQHECIPQAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 19 ~~l~~~l~~~-l~~~g~~~~t~~Q~~~i~~~~~g------~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
++...++++. +..+.| ++|..|++++..|... .+.++++.-|||||++++++++..+. .|.|+..++||
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAPT 320 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAPT 320 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEeccH
Confidence 3444555555 567777 6999999999999864 68899999999999999999998876 56699999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchH---HhHHHHhcC-CCeEEE---eecCccCCCCceEEEEeCCC
Q psy1539 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ---KDEEYLKTH-NPQIVG---LVNYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~---~~~~~l~~~-~~iiv~---l~~~~~~~~~~~~lVlDEad 159 (175)
.-||.|.++.+.++...+ ++++..++|....+ +..+.+.+| .+++|| |.+....|.++.++|+||-+
T Consensus 321 EILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQH 394 (677)
T COG1200 321 EILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccc
Confidence 999999999999999998 99999999987644 344566677 788998 88889999999999999984
No 76
>KOG0354|consensus
Probab=99.60 E-value=1.2e-14 Score=124.14 Aligned_cols=134 Identities=17% Similarity=0.120 Sum_probs=96.8
Q ss_pred CCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHH
Q psy1539 21 RREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100 (175)
Q Consensus 21 l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 100 (175)
+.+.......=-..-.++.+|.+.....+ |+|++|++|||+|||.+++..+.+++...++ .++++++||+-|+.|+..
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a 124 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIA 124 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHH
Confidence 34444333322233468999999998888 9999999999999999999999999887554 599999999999999887
Q ss_pred HHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecC-ccCCCCceEEEEeCCC
Q psy1539 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNY-ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 101 ~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~-~~~~~~~~~lVlDEad 159 (175)
.+..++.. -++....||.........+-...++++. |.+. ...++.+.++|+|||+
T Consensus 125 ~~~~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 125 CFSIYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred HHhhccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 77766643 3444455554333333344455788887 2222 2236899999999994
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.59 E-value=1.5e-14 Score=116.96 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=62.9
Q ss_pred HHHHhHHHHhcCCc--EEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhC---CCeEE
Q psy1539 40 FQHECIPQAVLGMD--ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM---SNIKV 114 (175)
Q Consensus 40 ~Q~~~i~~~~~g~~--~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~i~v 114 (175)
+|.++++.+.++.+ +++++|||||||.+|++|++.. ..++++++|+++|++|+++.++++...+ .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999999864 8899999999999999999852 2368999999999999999999987544 25667
Q ss_pred EEEECC
Q psy1539 115 GVFFGG 120 (175)
Q Consensus 115 ~~~~g~ 120 (175)
..+.|.
T Consensus 75 ~~~~g~ 80 (357)
T TIGR03158 75 LHVSKA 80 (357)
T ss_pred EEecCC
Confidence 777775
No 78
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1e-13 Score=120.60 Aligned_cols=122 Identities=18% Similarity=0.142 Sum_probs=96.1
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.|+++|-...-.+.+|+ +..+.||+|||+++.+|++-.... +.++-|++||..||.|..+++..+.+.+ |++++
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~IvTpn~yLA~rd~e~~~~l~~~L-Glsv~ 154 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT---GKGVHVVTVNDYLAKRDAEWMGPLYEFL-GLSVG 154 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHHhhc-CCeEE
Confidence 57888888776666664 899999999999999999633332 2257799999999999999999999998 99999
Q ss_pred EEECCCchHHhHHHHhcCCCeEEE----e----ecCc-------cCCCCceEEEEeCCCCCCHHH
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVG----L----VNYE-------TNLSGVVVNVMDVRSGGWWLD 165 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~----l----~~~~-------~~~~~~~~lVlDEad~~f~~~ 165 (175)
+++|+.+..++.+.+ .++|+++ + ++.. ...+.+.++|+||||....++
T Consensus 155 ~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDe 217 (830)
T PRK12904 155 VILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDE 217 (830)
T ss_pred EEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheecc
Confidence 999999877666665 3799998 1 1111 346789999999997554443
No 79
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.49 E-value=3.6e-13 Score=118.50 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=81.7
Q ss_pred HHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH-HhhCCCeEEEEEECC
Q psy1539 42 HECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF-SKYMSNIKVGVFFGG 120 (175)
Q Consensus 42 ~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~i~v~~~~g~ 120 (175)
.+.+..+.++++++++|+||||||++|.+++++.... ..+++++.|||++|.|+.+.+.+. .... +..++..+++
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~-g~~VGy~vr~ 86 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKP-GETVGYRMRA 86 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCccc-CceEEEEecC
Confidence 3445566678999999999999999999999976432 248999999999999999988554 3434 7778877776
Q ss_pred CchHHhHHHHhcCCCeEEE-------eecCccCCCCceEEEEeCCCC
Q psy1539 121 LPIQKDEEYLKTHNPQIVG-------LVNYETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 121 ~~~~~~~~~l~~~~~iiv~-------l~~~~~~~~~~~~lVlDEad~ 160 (175)
.+... +...++|+ +......+++++++|+||+|.
T Consensus 87 ~~~~~------~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHE 127 (812)
T PRK11664 87 ESKVG------PNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHE 127 (812)
T ss_pred ccccC------CCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCc
Confidence 54221 23467777 222245789999999999974
No 80
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=2.2e-13 Score=114.58 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=74.6
Q ss_pred EEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHh
Q psy1539 55 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLK 131 (175)
Q Consensus 55 ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~ 131 (175)
++.++||||||.+|+..+...+. .+.++||++|+++|+.|+.+.+++.. +.++..++|+.+..+..+ .+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---LGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHH
Confidence 46899999999999766555543 34589999999999999988887643 567888999887554433 333
Q ss_pred cC-CCeEEEeecC-ccCCCCceEEEEeCC-CCCCH
Q psy1539 132 TH-NPQIVGLVNY-ETNLSGVVVNVMDVR-SGGWW 163 (175)
Q Consensus 132 ~~-~~iiv~l~~~-~~~~~~~~~lVlDEa-d~~f~ 163 (175)
++ .++|||+... ...+++++++|+||. |.+|.
T Consensus 74 ~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~~syk 108 (505)
T TIGR00595 74 NGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYK 108 (505)
T ss_pred cCCCCEEECChHHHcCcccCCCEEEEECCCccccc
Confidence 33 5788874333 346889999999999 34443
No 81
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.47 E-value=1.1e-12 Score=90.69 Aligned_cols=106 Identities=30% Similarity=0.412 Sum_probs=79.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~ 131 (175)
+++++.+|||+|||..++..+...... ....++++++|++.++.|..+.+...... +..+..+.++...........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLS 77 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhc
Confidence 478999999999999988888777654 23458999999999999999988887653 466777777766555544555
Q ss_pred cCCCeEEEeecC--------ccCCCCceEEEEeCCCC
Q psy1539 132 THNPQIVGLVNY--------ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 132 ~~~~iiv~l~~~--------~~~~~~~~~lVlDEad~ 160 (175)
.+.+++++..+. ........++|+||++.
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~ 114 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR 114 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH
Confidence 667888872222 22345789999999953
No 82
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.47 E-value=3.4e-13 Score=98.34 Aligned_cols=130 Identities=17% Similarity=0.105 Sum_probs=82.3
Q ss_pred CCcHHHHHhHHHHhc-------CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 36 EQTSFQHECIPQAVL-------GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~-------g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
+++++|.+++..+.+ .+++++.+|||||||.+++..+..... ++++++|+..|+.|..+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 579999999988874 589999999999999988754544432 8999999999999999999766544
Q ss_pred CCCeEEE----------EEECCCchHHhHHHHhcCCCeEEEeecC-------------------ccCCCCceEEEEeCCC
Q psy1539 109 MSNIKVG----------VFFGGLPIQKDEEYLKTHNPQIVGLVNY-------------------ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 109 ~~~i~v~----------~~~g~~~~~~~~~~l~~~~~iiv~l~~~-------------------~~~~~~~~~lVlDEad 159 (175)
....... ..............-.....+++...+. ........++|+|||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2111000 0011111111122223344556551111 1233467899999998
Q ss_pred CCCHHH-HHHHHh
Q psy1539 160 GGWWLD-LEALIL 171 (175)
Q Consensus 160 ~~f~~~-v~~il~ 171 (175)
...... .+.|+.
T Consensus 157 ~~~~~~~~~~i~~ 169 (184)
T PF04851_consen 157 HYPSDSSYREIIE 169 (184)
T ss_dssp CTHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHc
Confidence 777766 666654
No 83
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.46 E-value=9.3e-13 Score=115.88 Aligned_cols=108 Identities=17% Similarity=0.131 Sum_probs=80.7
Q ss_pred HHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH-HhhCCCeEEEEEECC
Q psy1539 42 HECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF-SKYMSNIKVGVFFGG 120 (175)
Q Consensus 42 ~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~i~v~~~~g~ 120 (175)
.+.+..+.++.+++++|+||||||.+|.+++++... .+.+++++.|+|++|.|+.+.+.+. .... +..++..+++
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~-g~~VGy~vr~ 83 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAV-GQTVGYRVRG 83 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCc-CcEEEEEEcc
Confidence 344566667899999999999999999999998763 3458999999999999999987544 3333 6667666555
Q ss_pred CchHHhHHHHhcCCCeEEE----e---ecCccCCCCceEEEEeCCC
Q psy1539 121 LPIQKDEEYLKTHNPQIVG----L---VNYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 121 ~~~~~~~~~l~~~~~iiv~----l---~~~~~~~~~~~~lVlDEad 159 (175)
.+. ..++..|+++ + +.....+++++++|+||+|
T Consensus 84 ~~~------~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaH 123 (819)
T TIGR01970 84 ENK------VSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFH 123 (819)
T ss_pred ccc------cCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccc
Confidence 431 2234577777 2 2224568999999999997
No 84
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.45 E-value=7.3e-13 Score=106.97 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=46.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
++++.+|||||||.+|++|++..+.. ..+.+++|++|+++|+.|+++.+..+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f 53 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELF 53 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHh
Confidence 58999999999999999999988654 345689999999999999999998875
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.43 E-value=1.8e-12 Score=107.61 Aligned_cols=120 Identities=21% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCcHHHHHhHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 36 EQTSFQHECIPQAVL----GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~----g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.++++|++|+..+.+ ++..+++.|||+|||..++..+... .. .+|||||+++|+.|+.+.+.+.... .
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-~~-----~~Lvlv~~~~L~~Qw~~~~~~~~~~--~ 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-KR-----STLVLVPTKELLDQWAEALKKFLLL--N 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-cC-----CEEEEECcHHHHHHHHHHHHHhcCC--c
Confidence 589999999999998 8999999999999998876655443 21 3999999999999998766665432 2
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEEeecC--------ccCCCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY--------ETNLSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~--------~~~~~~~~~lVlDEad~~f~~~v~~il 170 (175)
..++.+.|+.. ... . ..+.|+..+. .+...+..++|+||++..-.+..+.++
T Consensus 108 ~~~g~~~~~~~-~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~ 167 (442)
T COG1061 108 DEIGIYGGGEK-ELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRIL 167 (442)
T ss_pred cccceecCcee-ccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHH
Confidence 23444444432 111 0 2477772222 223336999999999877665554443
No 86
>KOG0352|consensus
Probab=99.43 E-value=6.1e-13 Score=107.07 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=95.2
Q ss_pred HHHHHHhhC-CCCCC-cHHHHHhHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHH
Q psy1539 24 KEDRIGESQ-PFREQ-TSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100 (175)
Q Consensus 24 ~l~~~l~~~-g~~~~-t~~Q~~~i~~~~~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 100 (175)
.+.++|++. |+.++ ++.|..|+..+..+ +|+.|+.|||+||++||-+|.|-+ ++ ..|++.|..+|.+.+.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~g-ITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GG-ITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CC-eEEEehHHHHHHHHHHH
Confidence 445555554 55543 89999999988876 899999999999999999999865 33 78999999999998888
Q ss_pred HHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC---CCeEEE------------eecCccCCCCceEEEEeCC----
Q psy1539 101 EYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH---NPQIVG------------LVNYETNLSGVVVNVMDVR---- 158 (175)
Q Consensus 101 ~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~---~~iiv~------------l~~~~~~~~~~~~lVlDEa---- 158 (175)
.+.++ .+.+..+.+..+..+..+ .|... ..++.. +++...+-..++++|+|||
T Consensus 80 HL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 80 HLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred HHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh
Confidence 87766 455555656555444333 22222 223333 4444555668999999999
Q ss_pred --CCCCHHHHHH
Q psy1539 159 --SGGWWLDLEA 168 (175)
Q Consensus 159 --d~~f~~~v~~ 168 (175)
...|++|.-.
T Consensus 155 QWGHDFRPDYL~ 166 (641)
T KOG0352|consen 155 QWGHDFRPDYLT 166 (641)
T ss_pred hhccccCcchhh
Confidence 4567777543
No 87
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.42 E-value=1.2e-12 Score=115.61 Aligned_cols=118 Identities=25% Similarity=0.243 Sum_probs=94.7
Q ss_pred HhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 29 GESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
-...+| .+.++|++|+-.+.+|.+++++||||||||+...+++...+.. +.+++|.+|.++|.+|.++.+......
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---GQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---CCceEeccchhhhhhhHHHHHHHHhhh
Confidence 345667 5899999999999999999999999999999998888777664 346999999999999988887665543
Q ss_pred CCCeEEEEEECCCchHHhHHHHhcCCCeEEE--------eecCccCCCCceEEEEeCC
Q psy1539 109 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 109 ~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~~~~~~~~lVlDEa 158 (175)
. .-.+++++|+.+... +++++|. +.+....+..+..+|+||+
T Consensus 189 v-~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEv 238 (1041)
T COG4581 189 V-ADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEV 238 (1041)
T ss_pred h-hhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEee
Confidence 2 334788899887654 3566666 3333677889999999999
No 88
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=1.5e-12 Score=113.61 Aligned_cols=122 Identities=15% Similarity=0.083 Sum_probs=91.2
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.|+++|-..--.+. ..-+..++||.|||+++.+|++.+... +..+.|++|+..||.|..+++..+.+.+ |+++.
T Consensus 82 ~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~---g~~VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~ 155 (908)
T PRK13107 82 RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALT---GKGVHVITVNDYLARRDAENNRPLFEFL-GLTVG 155 (908)
T ss_pred CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEE
Confidence 45666655433333 455889999999999999999877664 3359999999999999999999999998 99999
Q ss_pred EEECCCchHHhHHHHhcCCCeEEEee---------cC-ccCC-----CCceEEEEeCCCCCCHHH
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVGLV---------NY-ETNL-----SGVVVNVMDVRSGGWWLD 165 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~l~---------~~-~~~~-----~~~~~lVlDEad~~f~~~ 165 (175)
++.++.+..+..+.. +++|++++. ++ .... +.+.+.|+||+|..+.++
T Consensus 156 ~i~~~~~~~~r~~~Y--~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDE 218 (908)
T PRK13107 156 INVAGLGQQEKKAAY--NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDE 218 (908)
T ss_pred EecCCCCHHHHHhcC--CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcccc
Confidence 999988753332222 579999821 11 1222 678999999997655544
No 89
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.41 E-value=1.6e-12 Score=109.57 Aligned_cols=128 Identities=17% Similarity=0.145 Sum_probs=98.8
Q ss_pred CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
+||..+++-|.++|..+++|+|+++..|||.||++||-+|.+-. .| -+|||+|..+|.+...+.++.. |
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~G-~TLVVSPLiSLM~DQV~~l~~~-----G 81 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----EG-LTLVVSPLISLMKDQVDQLEAA-----G 81 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----CC-CEEEECchHHHHHHHHHHHHHc-----C
Confidence 48999999999999999999999999999999999999999765 33 6899999999998877766654 7
Q ss_pred eEEEEEECCCchHHhHHH---HhcC-CCeEEE----eecC----ccCCCCceEEEEeCC------CCCCHHHHHHHH
Q psy1539 112 IKVGVFFGGLPIQKDEEY---LKTH-NPQIVG----LVNY----ETNLSGVVVNVMDVR------SGGWWLDLEALI 170 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~---l~~~-~~iiv~----l~~~----~~~~~~~~~lVlDEa------d~~f~~~v~~il 170 (175)
+.+..+.+..+.++.... +..+ .+++.. +.+. .+.-..+.++|+||| ...|+++...+-
T Consensus 82 i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg 158 (590)
T COG0514 82 IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLG 158 (590)
T ss_pred ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHH
Confidence 888888888775554433 3333 244433 2222 233558999999999 345999888763
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.38 E-value=1.8e-11 Score=108.66 Aligned_cols=145 Identities=19% Similarity=0.166 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHhhC-CCCCCcHHHHHhHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 19 RNRREKEDRIGESQ-PFREQTSFQHECIPQAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 19 ~~l~~~l~~~l~~~-g~~~~t~~Q~~~i~~~~~g------~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
++.+.+..+.+.+. +|. -|+-|..||..+.+. .|.++|+--|-|||-+++=++..... +|.|+.++|||
T Consensus 577 f~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---~GKQVAvLVPT 652 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---DGKQVAVLVPT 652 (1139)
T ss_pred CCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---CCCeEEEEccc
Confidence 34444555555443 554 599999999998853 79999999999999988777766655 56799999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE---eecCccCCCCceEEEEeCCC-C--C
Q psy1539 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG---LVNYETNLSGVVVNVMDVRS-G--G 161 (175)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~---l~~~~~~~~~~~~lVlDEad-~--~ 161 (175)
.-||+|+++.+++-.+.+ .++|..+.-=.+.+++.+ .+++| .+|||| |++..+.|.++.++|+||-. + .
T Consensus 653 TlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk 731 (1139)
T COG1197 653 TLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVK 731 (1139)
T ss_pred HHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCcc
Confidence 999999999999888888 888888766555555544 44554 689999 88889999999999999982 2 3
Q ss_pred CHHHHHH
Q psy1539 162 WWLDLEA 168 (175)
Q Consensus 162 f~~~v~~ 168 (175)
.++.+++
T Consensus 732 ~KEkLK~ 738 (1139)
T COG1197 732 HKEKLKE 738 (1139)
T ss_pred HHHHHHH
Confidence 4444444
No 91
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.38 E-value=5.3e-12 Score=112.28 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=77.5
Q ss_pred CHHHHHHHhhCCCCCCcHHHHHhHH----HHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 22 REKEDRIGESQPFREQTSFQHECIP----QAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 22 ~~~l~~~l~~~g~~~~t~~Q~~~i~----~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
.+.+.+.+...||. ++|.|.+.+. .+.+|+++++.||||+|||++|++|++.... ++.+++|.+||++|..|
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQ 307 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHH
Confidence 34677778888986 7999998665 5556899999999999999999999988765 23489999999999999
Q ss_pred HHH-HHHHHHhhCC-CeEEEEEECCCc
Q psy1539 98 ISK-EYERFSKYMS-NIKVGVFFGGLP 122 (175)
Q Consensus 98 ~~~-~~~~~~~~~~-~i~v~~~~g~~~ 122 (175)
+.. .+..+.+.++ .++++.+.|+.+
T Consensus 308 l~~~~~~~l~~~~~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 308 LLEKDIPLLNEILNFKINAALIKGKSN 334 (850)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcchh
Confidence 865 5666666541 488888888754
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.37 E-value=8.4e-12 Score=112.87 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=81.3
Q ss_pred CCcHHHHHhHHHHh----cC-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 36 EQTSFQHECIPQAV----LG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~----~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
.++++|.+|+..+. +| ++.+++.+||||||.+.+ .++.++.......++|+|+|+++|+.|..+.+..+.-..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~- 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG- 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc-
Confidence 58999999998765 34 689999999999998743 444555444445689999999999999999888763221
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEEeecC-------------ccCCCCceEEEEeCCCCCC
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY-------------ETNLSGVVVNVMDVRSGGW 162 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~-------------~~~~~~~~~lVlDEad~~f 162 (175)
......+++.....+. .......++|++.+. ...+.+++++|+|||+.+.
T Consensus 491 ~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~ 553 (1123)
T PRK11448 491 DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGY 553 (1123)
T ss_pred ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCC
Confidence 1111112221111111 112346788884332 1345678899999998765
No 93
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=1.8e-11 Score=105.87 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=87.3
Q ss_pred CCcHHHHHhHHHHh-cC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 36 EQTSFQHECIPQAV-LG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~-~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
.++|+|.+|+..+. +| +..+++.|||+|||+..+..+.. +. .++|||||+.+|+.|+.+.+.++.... ..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l~-----k~tLILvps~~Lv~QW~~ef~~~~~l~-~~ 327 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-VK-----KSCLVLCTSAVSVEQWKQQFKMWSTID-DS 327 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-hC-----CCEEEEeCcHHHHHHHHHHHHHhcCCC-Cc
Confidence 47999999998877 34 47899999999999988765543 21 259999999999999999999886432 45
Q ss_pred EEEEEECCCchHHhHHHHhcCCCeEEEeecC----------------ccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 113 KVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY----------------ETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~----------------~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+..++|+.... .....+++|++.+. .+.-....++|+||++..-....+.++.
T Consensus 328 ~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~ 397 (732)
T TIGR00603 328 QICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLT 397 (732)
T ss_pred eEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHH
Confidence 667777764321 11235788872211 1112367899999998766666666554
No 94
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.32 E-value=2.1e-11 Score=105.41 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=93.2
Q ss_pred CCcHHHHHhHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 36 EQTSFQHECIPQAVLG----MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g----~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.+++-|+.|...+... +..++.+.||||||.+|+-.+-..+.. |.++|+|+|..+|..|+.+.++.. + +
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---GkqvLvLVPEI~Ltpq~~~rf~~r---F-g 270 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GKQVLVLVPEIALTPQLLARFKAR---F-G 270 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CCEEEEEeccccchHHHHHHHHHH---h-C
Confidence 5688999999888754 789999999999999998877777663 458999999999999977766654 4 6
Q ss_pred eEEEEEECCCchHHhHHH---Hhc-CCCeEEEeecC-ccCCCCceEEEEeCC-CCCCH
Q psy1539 112 IKVGVFFGGLPIQKDEEY---LKT-HNPQIVGLVNY-ETNLSGVVVNVMDVR-SGGWW 163 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~---l~~-~~~iiv~l~~~-~~~~~~~~~lVlDEa-d~~f~ 163 (175)
.++..++++.+..+..+. ..+ ...++||.-+. ...|+++.++|+||- |..|+
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYK 328 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYK 328 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEecccccccc
Confidence 789999999876544433 333 35677775444 557899999999998 44443
No 95
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.31 E-value=4.1e-11 Score=104.85 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=91.6
Q ss_pred HHhhC-CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 28 IGESQ-PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 28 ~l~~~-g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.+.+. || .|+..|+-+...+..|++.-+.||||.|||..-++..+-. ...+.++++|+||+.|+.|+++.++++.
T Consensus 74 fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~---a~kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 74 FFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL---AKKGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH---HhcCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 34444 55 8999999999999999999999999999996444333222 2245689999999999999999999999
Q ss_pred hhCCCeEEEE-EECCCchHH---hHHHHhc-CCCeEEE----eecCccCCC--CceEEEEeCCC
Q psy1539 107 KYMSNIKVGV-FFGGLPIQK---DEEYLKT-HNPQIVG----LVNYETNLS--GVVVNVMDVRS 159 (175)
Q Consensus 107 ~~~~~i~v~~-~~g~~~~~~---~~~~l~~-~~~iiv~----l~~~~~~~~--~~~~lVlDEad 159 (175)
....+..+-. .+|..+.++ ..+.+.+ +-+|+|+ +..+.-.++ +++++.+|++|
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVD 213 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVD 213 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHH
Confidence 7762244433 566655433 3445555 4678887 333333344 68999999985
No 96
>KOG0353|consensus
Probab=99.25 E-value=4.9e-11 Score=95.17 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=107.9
Q ss_pred CCcccccccccccCCCCHHHHHHHhhC-CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeE
Q psy1539 6 GMFHGVTVKVLSSRNRREKEDRIGESQ-PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY 84 (175)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~ 84 (175)
++++|..|.. ++++.+.+..+.|++. ...+++|.|..+|...+.|++.++..|||-||++||-+|.+-. +| .
T Consensus 64 yd~spaawdk-d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----dg-~ 136 (695)
T KOG0353|consen 64 YDRSPAAWDK-DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----DG-F 136 (695)
T ss_pred ccCCcccccc-CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----CC-c
Confidence 4455555544 5688888888877765 4568999999999999999999999999999999999999754 33 6
Q ss_pred EEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHh----c-CC--CeEEE----------eecC---c
Q psy1539 85 VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK----T-HN--PQIVG----------LVNY---E 144 (175)
Q Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~----~-~~--~iiv~----------l~~~---~ 144 (175)
+|+++|...|.+...-+++.+ |+....+...++. +..+.+. + +. ..|.. +++. .
T Consensus 137 alvi~plislmedqil~lkql-----gi~as~lnanssk-e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka 210 (695)
T KOG0353|consen 137 ALVICPLISLMEDQILQLKQL-----GIDASMLNANSSK-EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKA 210 (695)
T ss_pred eEeechhHHHHHHHHHHHHHh-----CcchhhccCcccH-HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHH
Confidence 999999999998877777766 6666666666653 3333222 1 11 12222 1111 3
Q ss_pred cCCCCceEEEEeCC------CCCCHHHHHH
Q psy1539 145 TNLSGVVVNVMDVR------SGGWWLDLEA 168 (175)
Q Consensus 145 ~~~~~~~~lVlDEa------d~~f~~~v~~ 168 (175)
.....++++.+||+ ...|++|.+.
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~ 240 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKA 240 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHH
Confidence 45567899999999 3567777654
No 97
>PRK09694 helicase Cas3; Provisional
Probab=99.24 E-value=9.7e-11 Score=103.64 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=65.5
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh-CCCeE
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY-MSNIK 113 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~i~ 113 (175)
..|+|+|+.+.........+++.+|||+|||.+++..+.... ......++++..||++.++|+++.++++.+. ++...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-HhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 379999998864434457799999999999999877655433 3333458999999999999999999876553 33456
Q ss_pred EEEEECCCc
Q psy1539 114 VGVFFGGLP 122 (175)
Q Consensus 114 v~~~~g~~~ 122 (175)
+.+.+|...
T Consensus 364 v~L~Hg~a~ 372 (878)
T PRK09694 364 LILAHGNSR 372 (878)
T ss_pred eEeecCcch
Confidence 777787654
No 98
>KOG0951|consensus
Probab=99.23 E-value=2e-11 Score=108.34 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=103.8
Q ss_pred CCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHhhhcC--------CCCeEEEEEec
Q psy1539 20 NRREKEDRIGESQPFREQTSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETT--------DSNVYVLVMCH 90 (175)
Q Consensus 20 ~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~--------~~~~~~lil~P 90 (175)
.++..-..++. |...++++|....+..+.+ .|+++|||||+|||-.+++.+++.+... ....+.+|++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 44444555554 4567999999999998877 8999999999999999999999988643 23458999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecC----------ccCCCCceEEEEeCCC
Q psy1539 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY----------ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 91 t~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~----------~~~~~~~~~lVlDEad 159 (175)
+++|++.+...+.+....+ |++|.-.+|+.....+ .+ .+..+||++... ....+-++++|+||.+
T Consensus 373 mKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~--qi-eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKE--QI-EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred HHHHHHHHHHHHHhhcccc-CcEEEEecccccchhh--hh-hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh
Confidence 9999999999888888888 9999999999763221 12 346888883332 2344568999999994
No 99
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.21 E-value=1.1e-10 Score=103.24 Aligned_cols=85 Identities=22% Similarity=0.230 Sum_probs=68.7
Q ss_pred CCCCCCcHHHHHhHHH----HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH-HHHHHHHH
Q psy1539 32 QPFREQTSFQHECIPQ----AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI-SKEYERFS 106 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~----~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~-~~~~~~~~ 106 (175)
.|| ++++-|.+.... +.++..+++.|+||+|||++|++|++... .+.+++|++||++|++|+ .+.+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 356 579999995543 33578999999999999999999988754 346899999999999999 46688887
Q ss_pred hhCCCeEEEEEECCCc
Q psy1539 107 KYMSNIKVGVFFGGLP 122 (175)
Q Consensus 107 ~~~~~i~v~~~~g~~~ 122 (175)
+.+ ++++..+.|+.+
T Consensus 317 ~~~-~~~~~~~kg~~~ 331 (820)
T PRK07246 317 EVF-HIDCHSLKGPQN 331 (820)
T ss_pred Hhc-CCcEEEEECCcc
Confidence 776 788888887754
No 100
>KOG0351|consensus
Probab=99.20 E-value=4.7e-11 Score=105.75 Aligned_cols=135 Identities=19% Similarity=0.144 Sum_probs=100.1
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
........+|...+++-|.++|...+.|+|.++..|||.||++||-+|++-. +.-.++|.|..+|.+.+...+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L- 324 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHL- 324 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhh-
Confidence 3333455668999999999999999999999999999999999999988643 227899999999997754444
Q ss_pred HHHhhCCCeEEEEEECCCchHHhH---HHHhcCCCeE---EE----------eecCccCCCC---ceEEEEeCC------
Q psy1539 104 RFSKYMSNIKVGVFFGGLPIQKDE---EYLKTHNPQI---VG----------LVNYETNLSG---VVVNVMDVR------ 158 (175)
Q Consensus 104 ~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~~~ii---v~----------l~~~~~~~~~---~~~lVlDEa------ 158 (175)
... ++....+.++....++. +.+.++.+.+ .. +.+....+.. +.++|+|||
T Consensus 325 --~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 --SKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred --hhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 322 88889999988765433 4455553332 22 3333445555 899999999
Q ss_pred CCCCHHHHHHH
Q psy1539 159 SGGWWLDLEAL 169 (175)
Q Consensus 159 d~~f~~~v~~i 169 (175)
...|+++.+.+
T Consensus 401 gHdFRp~Yk~l 411 (941)
T KOG0351|consen 401 GHDFRPSYKRL 411 (941)
T ss_pred cccccHHHHHH
Confidence 46788887765
No 101
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=3.2e-10 Score=97.40 Aligned_cols=122 Identities=13% Similarity=0.016 Sum_probs=96.4
Q ss_pred CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 33 PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
|. .|+++|....-.+++|+ +....||+|||++..+|+..... .|.++.+++|+--||.|-++++..+.+.+ |+
T Consensus 76 g~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL---~G~~VhvvT~NdyLA~RDae~m~~ly~~L-GL 148 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL---QGRRVHVITVNDYLARRDAEWMGPLYEAL-GL 148 (764)
T ss_pred CC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH---cCCCeEEEcCCHHHHHHHHHHHHHHHHhc-CC
Confidence 44 58999999988888774 67999999999999999887765 45579999999999999999999999998 99
Q ss_pred EEEEEECCCchHHhHHHHhcCCCeEEE---------eecC------ccCCCCceEEEEeCCCCCCH
Q psy1539 113 KVGVFFGGLPIQKDEEYLKTHNPQIVG---------LVNY------ETNLSGVVVNVMDVRSGGWW 163 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~~~~iiv~---------l~~~------~~~~~~~~~lVlDEad~~f~ 163 (175)
+++++.++.+.++..+.. .|+|..+ |-++ ....+.+.+.|+||+|....
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 999999988755444444 4788887 2221 22335688999999974443
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=2e-10 Score=100.03 Aligned_cols=121 Identities=14% Similarity=0.065 Sum_probs=95.3
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.|+++|..+--.+.+|+ +....||+|||++..+|++-.... |.++-+++||--||.|-++.+..+.+.+ |++++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---G~~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl~vg 153 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---GKGVHVVTVNEYLSSRDATEMGELYRWL-GLTVG 153 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---CCCeEEEeccHHHHHhhHHHHHHHHHhc-CCeEE
Confidence 57889988876666776 899999999999999998877664 5579999999999999999999999999 99999
Q ss_pred EEECCCchHHhHHHHhcCCCeEEE---------eecC------ccCCCCceEEEEeCCCCCCHH
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVG---------LVNY------ETNLSGVVVNVMDVRSGGWWL 164 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~---------l~~~------~~~~~~~~~lVlDEad~~f~~ 164 (175)
++.|+.+.++..+.. .|+|+.+ |.++ ....+.+.+.|+||+|....+
T Consensus 154 ~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiD 215 (796)
T PRK12906 154 LNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILID 215 (796)
T ss_pred EeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeec
Confidence 999988765554444 4689888 2221 122357889999999754443
No 103
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.16 E-value=2.8e-10 Score=97.53 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=62.1
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH-hhC-CCeEEEEEECCCc
Q psy1539 46 PQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS-KYM-SNIKVGVFFGGLP 122 (175)
Q Consensus 46 ~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~-~~i~v~~~~g~~~ 122 (175)
..+.+++.+++.|+||+|||++|++|++..+... .+.+++|.+||++|..|+.+.+..+. +.. ..+++..+.|+.+
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~n 88 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQE 88 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCcc
Confidence 3445678999999999999999999999876532 34689999999999999999999887 432 2678888888754
No 104
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=3.5e-10 Score=99.12 Aligned_cols=121 Identities=16% Similarity=0.056 Sum_probs=92.2
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.|+++|-..--.+ ...-+....||+|||+++.+|++-... .|.++.+++|+--||.|-++++..+.+.+ |+++.
T Consensus 82 ~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al---~G~~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~ 155 (913)
T PRK13103 82 RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNAL---SGKGVHVVTVNDYLARRDANWMRPLYEFL-GLSVG 155 (913)
T ss_pred CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHhccc-CCEEE
Confidence 4666776544333 355678999999999999999976655 45579999999999999999999999998 99999
Q ss_pred EEECCCchHHhHHHHhcCCCeEEE---e-----ecCccCC-------CCceEEEEeCCCCCCHH
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVG---L-----VNYETNL-------SGVVVNVMDVRSGGWWL 164 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~---l-----~~~~~~~-------~~~~~lVlDEad~~f~~ 164 (175)
++.++.+.++..+.+. ++|++| . ++..+.+ +++.+.|+||+|....+
T Consensus 156 ~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLID 217 (913)
T PRK13103 156 IVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILID 217 (913)
T ss_pred EECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheecc
Confidence 9998887555544443 799998 1 2223334 78999999999644433
No 105
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.12 E-value=9.4e-10 Score=95.62 Aligned_cols=127 Identities=20% Similarity=0.196 Sum_probs=82.1
Q ss_pred CcHHHHHhHHHHh----c------CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 37 QTSFQHECIPQAV----L------GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 37 ~t~~Q~~~i~~~~----~------g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
+..+|.+|+..+. + .+..+++.+||||||++.+..+...+ .....+++|+|+|+++|..|+.+.+..+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 6889999987653 2 25789999999999988765544333 33456799999999999999999988875
Q ss_pred hhCCCeEEEEEECCCchHHhHHHHhc-CCCeEEEeecCcc--------CCC--C-ceEEEEeCCCCCCHHHHHHHHh
Q psy1539 107 KYMSNIKVGVFFGGLPIQKDEEYLKT-HNPQIVGLVNYET--------NLS--G-VVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 107 ~~~~~i~v~~~~g~~~~~~~~~~l~~-~~~iiv~l~~~~~--------~~~--~-~~~lVlDEad~~f~~~v~~il~ 171 (175)
... . .+..+...-...+.+ ..+++|++.+... .+. + -.++|+|||+.+...+....|.
T Consensus 318 ~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~ 387 (667)
T TIGR00348 318 KDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK 387 (667)
T ss_pred CCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH
Confidence 321 1 111122222233333 3578888444411 111 1 1379999998776666655554
No 106
>KOG0947|consensus
Probab=99.08 E-value=3.8e-10 Score=98.27 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=85.4
Q ss_pred CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.+| ++...|++||-++..|.+++|.|+|.+|||+++..++.-. ..+..+++|-+|-++|.+|.++.|+.-...
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala---q~h~TR~iYTSPIKALSNQKfRDFk~tF~D--- 366 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA---QKHMTRTIYTSPIKALSNQKFRDFKETFGD--- 366 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH---HhhccceEecchhhhhccchHHHHHHhccc---
Confidence 344 5899999999999999999999999999999876655432 235679999999999999977777665443
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEE--------eecCccCCCCceEEEEeCCC
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVG--------LVNYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~~~~~~~~lVlDEad 159 (175)
+.+++|+.....+ +.++|. |.+..-.++++.++|+||++
T Consensus 367 --vgLlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH 413 (1248)
T KOG0947|consen 367 --VGLLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH 413 (1248)
T ss_pred --cceeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeee
Confidence 3478888765433 345554 33334556799999999993
No 107
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.04 E-value=1.7e-09 Score=85.20 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=56.9
Q ss_pred CcHHHHHhH----HHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCC---CeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 37 QTSFQHECI----PQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS---NVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 37 ~t~~Q~~~i----~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
|+|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+..... +.++++.++|..+..|....++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 699999954 455578999999999999999999999977654322 2489999999999999877777653
No 108
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.04 E-value=1.7e-09 Score=85.20 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=56.9
Q ss_pred CcHHHHHhH----HHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCC---CeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 37 QTSFQHECI----PQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS---NVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 37 ~t~~Q~~~i----~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
|+|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+..... +.++++.++|..+..|....++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 699999954 455578999999999999999999999977654322 2489999999999999877777653
No 109
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.02 E-value=8.4e-09 Score=80.01 Aligned_cols=123 Identities=19% Similarity=0.190 Sum_probs=89.9
Q ss_pred hCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
..|+ .|+++|..++-.+.+|+ ++.-.||-|||++..+|+.-... .|..+-|++.+..||..=.+++..+.+.+
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL---~G~~V~vvT~NdyLA~RD~~~~~~~y~~L- 145 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL---QGKGVHVVTSNDYLAKRDAEEMRPFYEFL- 145 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT---TSS-EEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH---hcCCcEEEeccHHHhhccHHHHHHHHHHh-
Confidence 3444 68999999997776766 89999999999998887766655 34578999999999999999999999999
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEE---------eecC------ccCCCCceEEEEeCCCCCC
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVG---------LVNY------ETNLSGVVVNVMDVRSGGW 162 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~---------l~~~------~~~~~~~~~lVlDEad~~f 162 (175)
|+++....++.+..+..+... ++|+.+ |.++ ....+.+.++|+||+|..+
T Consensus 146 Glsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999987554444443 578888 2111 2225789999999997443
No 110
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.94 E-value=5.9e-09 Score=82.31 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=85.4
Q ss_pred CCcHHHHHhHHHH----hcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 36 EQTSFQHECIPQA----VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 36 ~~t~~Q~~~i~~~----~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.+||.|+.+-..+ .+.++.+++|-||+|||.- +++.++.... .|.++.+.+|..+.|.+++..++.- +++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~--~G~~vciASPRvDVclEl~~Rlk~a---F~~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN--QGGRVCIASPRVDVCLELYPRLKQA---FSN 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh--cCCeEEEecCcccchHHHHHHHHHh---hcc
Confidence 6899999886544 4569999999999999964 4555555443 4558999999999998888877654 346
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEEeecCccCC-CCceEEEEeCCC
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNL-SGVVVNVMDVRS 159 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~-~~~~~lVlDEad 159 (175)
..+..++|+++..-+ .+.+|++..+.+.| +.++++++||+|
T Consensus 171 ~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~aFD~liIDEVD 212 (441)
T COG4098 171 CDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQAFDLLIIDEVD 212 (441)
T ss_pred CCeeeEecCCchhcc-------ccEEEEehHHHHHHHhhccEEEEeccc
Confidence 788999999864332 58999977775555 479999999997
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.88 E-value=9.8e-09 Score=88.76 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=86.0
Q ss_pred CCcHHHHHhHHHHh----cC-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 36 EQTSFQHECIPQAV----LG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~----~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
.++.+|..||..+. +| +..+++..||+|||.++ ++++.+|.+...-.++|+|+-+++|+.|.+..+..+.-
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P--- 240 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP--- 240 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC---
Confidence 57889999987554 45 45899999999999775 66777777766666899999999999998888776653
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEEeecC-------------ccCCCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY-------------ETNLSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~-------------~~~~~~~~~lVlDEad~~f~~~v~~il 170 (175)
.-.......+..... ++.+.+++.+. .+....++++|+|||+.|...+-++|+
T Consensus 241 ~~~~~n~i~~~~~~~-------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~ 306 (875)
T COG4096 241 FGTKMNKIEDKKGDT-------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSIL 306 (875)
T ss_pred CccceeeeecccCCc-------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHH
Confidence 333332222222111 35666662221 344556999999999877666555554
No 112
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.86 E-value=1.3e-08 Score=89.03 Aligned_cols=124 Identities=13% Similarity=0.065 Sum_probs=92.6
Q ss_pred CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 33 PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
|. .|+++|....-.+ .++-+....||.|||+++.+|+.-... .|..+.|++++..||.+-.+++..+.+.+ |+
T Consensus 74 G~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~L-GL 146 (870)
T CHL00122 74 GL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFL-GL 146 (870)
T ss_pred CC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHc-CC
Confidence 44 4677777654333 456789999999999999999864433 34578999999999999999999999999 99
Q ss_pred EEEEEECCCchHHhHHHHhcCCCeEEE---------eecC------ccCCCCceEEEEeCCCCCCHHH
Q psy1539 113 KVGVFFGGLPIQKDEEYLKTHNPQIVG---------LVNY------ETNLSGVVVNVMDVRSGGWWLD 165 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~~~~iiv~---------l~~~------~~~~~~~~~lVlDEad~~f~~~ 165 (175)
+++++.++.+..+..+.. .|+|..+ |.++ ....+.+.+.|+||+|....++
T Consensus 147 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDe 212 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDE 212 (870)
T ss_pred ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheecc
Confidence 999998888765544444 3688887 2222 1234678999999997554443
No 113
>KOG0951|consensus
Probab=98.86 E-value=1.4e-09 Score=96.95 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=91.3
Q ss_pred CCCCcHHHHHhHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 34 FREQTSFQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~-g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
|...+|+|.++++.+.+ +.++++.+|+|||||.++.++++. .....+++++.|..+.+...++.+.+-....-|.
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 44559999999998886 488999999999999999999887 2355689999999999998888776544433488
Q ss_pred EEEEEECCCchHHhHHHHhcCCCeEEEeecC---ccCCCCceEEEEeCC
Q psy1539 113 KVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY---ETNLSGVVVNVMDVR 158 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~---~~~~~~~~~lVlDEa 158 (175)
++..+.|..+. +.+.+.. .+++|++..+ .-..+++++.|.||+
T Consensus 1217 ~~~~l~ge~s~--~lkl~~~-~~vii~tpe~~d~lq~iQ~v~l~i~d~l 1262 (1674)
T KOG0951|consen 1217 RIVKLTGETSL--DLKLLQK-GQVIISTPEQWDLLQSIQQVDLFIVDEL 1262 (1674)
T ss_pred eEEecCCcccc--chHHhhh-cceEEechhHHHHHhhhhhcceEeeehh
Confidence 89888888764 3334444 4888883222 226789999999999
No 114
>KOG0948|consensus
Probab=98.82 E-value=1.1e-08 Score=87.72 Aligned_cols=109 Identities=24% Similarity=0.228 Sum_probs=85.7
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.+.|.|+.||..+-++.+++|+|-|.+|||.++..++...+..++ ++||-+|-++|.+|.|+.+..=.+ .|+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~-----DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK-----DVG 200 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc-----ccc
Confidence 478999999999999999999999999999999999988887533 899999999999998777654332 367
Q ss_pred EEECCCchHHhHHHHhcCCCeEEE--------eecCccCCCCceEEEEeCCC
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVG--------LVNYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~--------l~~~~~~~~~~~~lVlDEad 159 (175)
+.+|+...... +..+|. +.+...-.+.+.-+|+||.+
T Consensus 201 LMTGDVTInP~-------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH 245 (1041)
T KOG0948|consen 201 LMTGDVTINPD-------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH 245 (1041)
T ss_pred eeecceeeCCC-------CceeeeHHHHHHHHHhccchHhheeeeEEeeeeh
Confidence 78888765433 344444 33335556788899999984
No 115
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.80 E-value=4e-08 Score=88.41 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=64.3
Q ss_pred CCCCCcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH-HHHHHh
Q psy1539 33 PFREQTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE-YERFSK 107 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~-~~~~~~ 107 (175)
|| +++|-|.+.+..+. +++.+++.||||+|||++|++|++..... ++.+++|-++|+.|-+|+.+. +-.+.+
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~--~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK--KEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc--cCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 45 57999999665443 57899999999999999999999865543 445899999999999998764 333333
Q ss_pred hCC-CeEEEEEECCCc
Q psy1539 108 YMS-NIKVGVFFGGLP 122 (175)
Q Consensus 108 ~~~-~i~v~~~~g~~~ 122 (175)
.++ .++++++-|..+
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 221 567777776543
No 116
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.72 E-value=1.6e-07 Score=82.62 Aligned_cols=120 Identities=15% Similarity=0.065 Sum_probs=89.7
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.|+++|-..--.+ ...-+....||-|||+++.+|+.-... .|..+.|++++-.||..=.+++..+.+.+ |++|+
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL---~GkgVhVVTvNdYLA~RDae~m~~vy~~L-GLtvg 158 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNAL---TGKGVHVVTVNDYLARRDAEWMGQVHRFL-GLSVG 158 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhh---cCCCeEEEeCCHHHHHhHHHHHHHHHHHh-CCeEE
Confidence 4566666554333 455678999999999999999876554 34469999999999999999999999998 99999
Q ss_pred EEECCCchHHhHHHHhcCCCeEEE---------eecC------ccCCCCceEEEEeCCCCCCH
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVG---------LVNY------ETNLSGVVVNVMDVRSGGWW 163 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~---------l~~~------~~~~~~~~~lVlDEad~~f~ 163 (175)
++.++.+..+..... .|+|+.+ |.++ ....+.+.+.|+||+|....
T Consensus 159 ~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILI 219 (939)
T PRK12902 159 LIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILI 219 (939)
T ss_pred EECCCCChHHHHHhc--CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceee
Confidence 998877654433333 5799988 2222 23446789999999974433
No 117
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.71 E-value=7.9e-08 Score=83.37 Aligned_cols=102 Identities=13% Similarity=-0.003 Sum_probs=74.8
Q ss_pred EEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc
Q psy1539 56 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT 132 (175)
Q Consensus 56 i~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~ 132 (175)
..+.+|||||..|+-.+-..+.. |.++|+++|...|..|+.+.++.... +..+..++++.+..+..+ .+.+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 33446999999998777666553 45899999999999998888775542 256888999887665443 3444
Q ss_pred C-CCeEEEeecC-ccCCCCceEEEEeCC-CCCCH
Q psy1539 133 H-NPQIVGLVNY-ETNLSGVVVNVMDVR-SGGWW 163 (175)
Q Consensus 133 ~-~~iiv~l~~~-~~~~~~~~~lVlDEa-d~~f~ 163 (175)
| ..|+||.-.. ...++++.++|+||- |..|+
T Consensus 239 G~~~IViGtRSAvFaP~~~LgLIIvdEEhd~syk 272 (665)
T PRK14873 239 GQARVVVGTRSAVFAPVEDLGLVAIWDDGDDLLA 272 (665)
T ss_pred CCCcEEEEcceeEEeccCCCCEEEEEcCCchhhc
Confidence 5 5788885444 567899999999987 44444
No 118
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.65 E-value=3.2e-07 Score=80.36 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=60.2
Q ss_pred CCCCCcHHHHHhHHHHh---c------CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH-H
Q psy1539 33 PFREQTSFQHECIPQAV---L------GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE-Y 102 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~---~------g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~-~ 102 (175)
|| ++++-|.+....+. + ++.++|.||||+|||++|++|++-.... .+.+++|-+.|+.|-+|+.+. +
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k~vVIST~T~~LQeQL~~kDl 99 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKKKLVISTATVALQEQLVSKDL 99 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHhhhh
Confidence 56 57999999665554 3 2678999999999999999999875543 344799999999999998654 3
Q ss_pred HHHHhhC-CCeEEEEEEC
Q psy1539 103 ERFSKYM-SNIKVGVFFG 119 (175)
Q Consensus 103 ~~~~~~~-~~i~v~~~~g 119 (175)
-.+.+.. ..++++++-|
T Consensus 100 P~l~~~l~~~~~~~llKG 117 (697)
T PRK11747 100 PLLLKISGLDFKFTLAKG 117 (697)
T ss_pred hHHHHHcCCCceEEEEcC
Confidence 3333322 1455555544
No 119
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=3.8e-07 Score=80.08 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=62.7
Q ss_pred CCCCCcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 33 PFREQTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.|..++|.|.+.+..+. +|.+.++.+|||+|||++.+.|.+......+...++++.+.|..-..|..+.++++.
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhhh
Confidence 46667999999876554 579999999999999999999999976654445789999999999999999998864
No 120
>KOG0949|consensus
Probab=98.58 E-value=1.3e-07 Score=83.08 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=82.2
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe-EE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI-KV 114 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i-~v 114 (175)
.|..+|++.+..+-.++..+|.|||-+|||.+-...+=..+.. .+.-.+++++||++|++|+........... .+ +.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~-t~~rg 588 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSDVVIYVAPTKALVNQVSANVYARFDTK-TFLRG 588 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh-cCCCEEEEecchHHHhhhhhHHHHHhhccC-ccccc
Confidence 5788999999999999999999999999997654444334433 344479999999999999887766554221 11 22
Q ss_pred EEEECCCchHHhHHHHhcCCCeEEE--------eec---CccCCCCceEEEEeCC
Q psy1539 115 GVFFGGLPIQKDEEYLKTHNPQIVG--------LVN---YETNLSGVVVNVMDVR 158 (175)
Q Consensus 115 ~~~~g~~~~~~~~~~l~~~~~iiv~--------l~~---~~~~~~~~~~lVlDEa 158 (175)
..+.|....+=+... -+|+++|+ |.. +....++++++|+||+
T Consensus 589 ~sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEV 641 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEV 641 (1330)
T ss_pred hhhHhhhhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechh
Confidence 233343321111111 15788887 444 3567789999999999
No 121
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.57 E-value=2.2e-07 Score=72.79 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=61.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCC---eEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSN---VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 126 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~---~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~ 126 (175)
..+..+++...|+|||+..+..+. .+...... ..+||++|. .+..|+.+.+.++.... ..++..+.|+......
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhccccccc-cccccccccccccccc
Confidence 347899999999999977654443 33322221 259999999 78889999999987543 5677776666512222
Q ss_pred HHHHhcCCCeEEE----ee-----cC--ccCCCCceEEEEeCCC
Q psy1539 127 EEYLKTHNPQIVG----LV-----NY--ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 127 ~~~l~~~~~iiv~----l~-----~~--~~~~~~~~~lVlDEad 159 (175)
........+++|+ +. .. .+.--+.+++|+||++
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH 144 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAH 144 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGG
T ss_pred cccccccceeeeccccccccccccccccccccccceeEEEeccc
Confidence 2222234566666 22 11 1222358999999994
No 122
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.55 E-value=7.8e-07 Score=81.48 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=61.8
Q ss_pred HHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEE--ec----CHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 40 FQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM--CH----TRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 40 ~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil--~P----t~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
.-.+.+..+.++..++++|+||||||. .+|.+-... ..+....|+ -| +++||.|+.+.+..-. |-.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~--g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l----G~~ 149 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL--GRGVKGLIGHTQPRRLAARTVANRIAEELETEL----GGC 149 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc--CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh----cce
Confidence 333445566667788899999999998 467433211 112222333 35 5788888888776421 222
Q ss_pred EEEEECCCchHHhHHHHhcCCCeEEE----ee---cCccCCCCceEEEEeCCC
Q psy1539 114 VGVFFGGLPIQKDEEYLKTHNPQIVG----LV---NYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~l~~~~~iiv~----l~---~~~~~~~~~~~lVlDEad 159 (175)
++.-+. ...+ ..+++.|+++ +. .....+++++++|+||||
T Consensus 150 VGY~vr---f~~~---~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAH 196 (1294)
T PRK11131 150 VGYKVR---FNDQ---VSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAH 196 (1294)
T ss_pred eceeec---Cccc---cCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCcc
Confidence 222111 1111 1245678887 22 224458999999999996
No 123
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.52 E-value=4.8e-07 Score=78.75 Aligned_cols=73 Identities=25% Similarity=0.257 Sum_probs=59.3
Q ss_pred hCCCCCCcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 31 SQPFREQTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
......|++.|.+.+..+. +|+.+++.||||+|||++|+.|++..... .+.+++|.++|+.|-.|+.+....+
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~--~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE--EGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH--cCCcEEEECCCHHHHHHHHHhhcch
Confidence 3345579999999985443 45779999999999999999999987654 3358999999999999988886554
No 124
>KOG0950|consensus
Probab=98.51 E-value=2.5e-07 Score=81.15 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=103.2
Q ss_pred HHHHHHhhCCCCCCcHHHHHhH--HHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECI--PQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i--~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
...-..+..|...+..+|.+++ |.+++++|.+...||+.|||++..+-++..... ....++.+.|....++.....
T Consensus 211 ~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~--~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 211 VSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC--RRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH--HhhceeEecceeehhHHHHhh
Confidence 3333456668888999999997 788899999999999999999999888887654 233688999999999988888
Q ss_pred HHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-------eecC---ccCCCCceEEEEeCCC----CCCHHHHH
Q psy1539 102 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-------LVNY---ETNLSGVVVNVMDVRS----GGWWLDLE 167 (175)
Q Consensus 102 ~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-------l~~~---~~~~~~~~~lVlDEad----~~f~~~v~ 167 (175)
+..+.... |+.+...+|........ +...+-|+ +.+. .-++..+.++|+||.+ .+-..+++
T Consensus 289 l~~~~~~~-G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE 363 (1008)
T KOG0950|consen 289 LSPFSIDL-GFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILE 363 (1008)
T ss_pred hhhhcccc-CCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHH
Confidence 88888887 99888887776543332 22356666 2222 2356688999999993 33334444
Q ss_pred HHH
Q psy1539 168 ALI 170 (175)
Q Consensus 168 ~il 170 (175)
.++
T Consensus 364 ~~l 366 (1008)
T KOG0950|consen 364 LLL 366 (1008)
T ss_pred HHH
Confidence 444
No 125
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.50 E-value=1.4e-06 Score=64.94 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=65.7
Q ss_pred CCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 36 EQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
.+++-|.+++..++.+ +-.++.++.|+|||.+ +-.+...+.. .+.++++++||..-+..+.+.. ++.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--~g~~v~~~apT~~Aa~~L~~~~--------~~~ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--AGKRVIGLAPTNKAAKELREKT--------GIE 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--TT--EEEEESSHHHHHHHHHHH--------TS-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--CCCeEEEECCcHHHHHHHHHhh--------Ccc
Confidence 3689999999999754 3577889999999965 3345555544 3568999999998887755542 222
Q ss_pred EEEEECCCchHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 114 VGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
+..+. .+....+. .-......+.+..++|+|||.+.-..++..++.
T Consensus 70 a~Ti~----------~~l~~~~~--~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~ 115 (196)
T PF13604_consen 70 AQTIH----------SFLYRIPN--GDDEGRPELPKKDVLIVDEASMVDSRQLARLLR 115 (196)
T ss_dssp EEEHH----------HHTTEECC--EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHH
T ss_pred hhhHH----------HHHhcCCc--ccccccccCCcccEEEEecccccCHHHHHHHHH
Confidence 21111 01000000 000001114566799999998887777777765
No 126
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.43 E-value=8.7e-06 Score=70.73 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=51.1
Q ss_pred CCCcHHHHHhHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHH
Q psy1539 35 REQTSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 104 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (175)
..+++.|.+|+..++.. ...+|.+|+|+|||.+..--+.+.+. .+.++++++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~---~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK---RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999988876 77889999999999655433333332 344899999999888887776654
No 127
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.43 E-value=1.8e-06 Score=64.64 Aligned_cols=127 Identities=11% Similarity=0.133 Sum_probs=67.4
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH-------HHHHHHH--
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI-------SKEYERF-- 105 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~-------~~~~~~~-- 105 (175)
...|+.|..++..+++..-+++.+|.|||||+..+...++.+.. ....+.++.-|..+....+ .+.+..+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 45689999999999988999999999999999998888888766 3445778888876532221 1111111
Q ss_pred --HhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecC--ccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 106 --SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY--ETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 106 --~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~--~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
...+..+- + ....+.+.+...+-+.-... ...|+ -.++|+|||...-..+++.+|-+
T Consensus 82 p~~d~l~~~~-----~----~~~~~~~~~~~~Ie~~~~~~iRGrt~~-~~~iIvDEaQN~t~~~~k~ilTR 142 (205)
T PF02562_consen 82 PIYDALEELF-----G----KEKLEELIQNGKIEIEPLAFIRGRTFD-NAFIIVDEAQNLTPEELKMILTR 142 (205)
T ss_dssp HHHHHHTTTS----------TTCHHHHHHTTSEEEEEGGGGTT--B--SEEEEE-SGGG--HHHHHHHHTT
T ss_pred HHHHHHHHHh-----C----hHhHHHHhhcCeEEEEehhhhcCcccc-ceEEEEecccCCCHHHHHHHHcc
Confidence 11110110 1 22333333333444441111 22233 38999999977777888888765
No 128
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.40 E-value=2.7e-06 Score=76.41 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=74.6
Q ss_pred CCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 36 EQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
.|.|+|.++...+++. ..+++.-..|.|||+-..+.+...+... ...++||+||. .|..|+...+.+.. ++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF----~l~ 225 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRF----NLR 225 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHh----CCC
Confidence 4899999998776643 5789999999999988766555444433 33479999998 89999887775433 444
Q ss_pred EEEEECCCchHH--h-HHHHhcCCCeEEE----eecC-----ccCCCCceEEEEeCCCC
Q psy1539 114 VGVFFGGLPIQK--D-EEYLKTHNPQIVG----LVNY-----ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 114 v~~~~g~~~~~~--~-~~~l~~~~~iiv~----l~~~-----~~~~~~~~~lVlDEad~ 160 (175)
..++.++..... . ...+ ...+++|+ +.+. .+.-.+.+++|+|||++
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf-~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPF-ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred eEEEcCcchhhhcccccCcc-ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 444433321100 0 0111 12466666 2221 12234789999999953
No 129
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.40 E-value=4e-06 Score=75.82 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=77.4
Q ss_pred CCcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 36 EQTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
.+.++|.+++..+. +|.+.++.-..|.|||+-.+ .++..+.. .......|||||. .+..|+.+.++++. |
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~---p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFC---P 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHC---C
Confidence 57899999997664 57889999999999998643 33443332 1222358999997 56678888888775 5
Q ss_pred CeEEEEEECCCchHHhHH--HHh-cCCCeEEE----eecC--ccCCCCceEEEEeCCCC
Q psy1539 111 NIKVGVFFGGLPIQKDEE--YLK-THNPQIVG----LVNY--ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~--~l~-~~~~iiv~----l~~~--~~~~~~~~~lVlDEad~ 160 (175)
.+++..++|......... .+. ...+++|+ +.+. .+.--+..++|+|||+.
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHr 302 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHR 302 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccc
Confidence 678888887654322211 111 23466666 2221 12222567999999953
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.39 E-value=2.7e-06 Score=74.91 Aligned_cols=123 Identities=16% Similarity=0.070 Sum_probs=90.8
Q ss_pred CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 33 PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
|. .|+++|...--.+..| -+....||-|||++..+|+.-... .|..+-|++..--||..=.+++..+.+.+ |+
T Consensus 76 G~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL---~GkgVhVVTvNdYLA~RDae~mg~vy~fL-GL 148 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL---TGKGVIVSTVNEYLAERDAEEMGKVFNFL-GL 148 (925)
T ss_pred CC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh---cCCceEEEecchhhhhhhHHHHHHHHHHh-CC
Confidence 44 5788888777666666 479999999999999998865444 34468888999999998888899998888 99
Q ss_pred EEEEEECCCchHHhHHHHhcCCCeEEE---------eecC------ccCCCCceEEEEeCCCCCCHH
Q psy1539 113 KVGVFFGGLPIQKDEEYLKTHNPQIVG---------LVNY------ETNLSGVVVNVMDVRSGGWWL 164 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~~~~iiv~---------l~~~------~~~~~~~~~lVlDEad~~f~~ 164 (175)
+|++...+.+..+..+.. .|+|..+ |.++ ....+.+.+.|+||+|....+
T Consensus 149 svG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILID 213 (925)
T PRK12903 149 SVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILID 213 (925)
T ss_pred ceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeec
Confidence 999998887655444444 4799988 1111 122467889999999644433
No 131
>PF13245 AAA_19: Part of AAA domain
Probab=98.38 E-value=2.5e-06 Score=53.87 Aligned_cols=59 Identities=25% Similarity=0.369 Sum_probs=40.2
Q ss_pred hHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEecCHHHHHHHHHHH
Q psy1539 44 CIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEY 102 (175)
Q Consensus 44 ~i~~~~~g~~-~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~ 102 (175)
++...+++.+ ++|.+|+|||||....--+...+.. ...+.++++++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4443333444 5569999999996665555444421 122568999999999999887777
No 132
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.36 E-value=3.2e-06 Score=63.55 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=50.3
Q ss_pred CCcHHHHHhHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHhh------hcCCCCeEEEEEecCHHHHHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQL------ETTDSNVYVLVMCHTRELAFQISKEYER 104 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~-~ii~a~TGsGKT~~~~~~~l~~l------~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (175)
++++-|.+|+..+++... .+|.||+|+|||.+.. .++..+ .....+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999998 9999999999995443 344443 1234566899999999999998888777
No 133
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.32 E-value=1.1e-05 Score=74.28 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=65.5
Q ss_pred hCCCCCCcHHHH---HhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 31 SQPFREQTSFQH---ECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 31 ~~g~~~~t~~Q~---~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
...|...-|+.. +.+..+.++..++++|+||||||. .+|.+-.-.......++++.-|.|--|..+...+.+-
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~e-- 134 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEE-- 134 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHH--
Confidence 345655556554 344555567888999999999998 3464432211111223444457776665555444332
Q ss_pred hCCCeEEEEEECC-CchHHhHHHHhcCCCeEEE----ee---cCccCCCCceEEEEeCCC
Q psy1539 108 YMSNIKVGVFFGG-LPIQKDEEYLKTHNPQIVG----LV---NYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 108 ~~~~i~v~~~~g~-~~~~~~~~~l~~~~~iiv~----l~---~~~~~~~~~~~lVlDEad 159 (175)
. +..++..+|. .....+. .++..|+++ ++ .....+++++++|+||||
T Consensus 135 -l-g~~lG~~VGY~vR~~~~~---s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaH 189 (1283)
T TIGR01967 135 -L-GTPLGEKVGYKVRFHDQV---SSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAH 189 (1283)
T ss_pred -h-CCCcceEEeeEEcCCccc---CCCceeeeccccHHHHHhhhCcccccCcEEEEcCcc
Confidence 2 3444444442 1111111 223456555 22 223458899999999996
No 134
>KOG1802|consensus
Probab=98.27 E-value=9e-06 Score=69.47 Aligned_cols=85 Identities=15% Similarity=0.074 Sum_probs=65.0
Q ss_pred HHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 28 IGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 28 ~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.+...++.+++.-|..|...+++..=.+|++|+|+|||.+-.--+.+.... ....+|+.+|+.--+.|+.+.+.+-
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t-- 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT-- 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--
Confidence 566678889999999999999999999999999999997754444443333 4447999999998888877665543
Q ss_pred hCCCeEEEEEEC
Q psy1539 108 YMSNIKVGVFFG 119 (175)
Q Consensus 108 ~~~~i~v~~~~g 119 (175)
+++|..+..
T Consensus 478 ---gLKVvRl~a 486 (935)
T KOG1802|consen 478 ---GLKVVRLCA 486 (935)
T ss_pred ---CceEeeeeh
Confidence 556655544
No 135
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.24 E-value=1.3e-05 Score=68.86 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=71.5
Q ss_pred cHHHHHhHHHHhcCCcEEEEcCCCChHHHHH--HHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVF--VLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~--~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
...|+.|+...+.++-.++.++.|+|||... ++..+..........++++.+||-.=+..+.+.+..-.... ...-.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l-~~~~~ 225 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL-AAAEA 225 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc-ccchh
Confidence 3789999999999999999999999999653 23333222221123578999999877777666554432211 00000
Q ss_pred EEECCCchHHhHHHHhcCCCeEEEe-------ecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVGL-------VNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~l-------~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
... ... .... ..+-+++. .....+...++++|+|||.|.=...+..++.
T Consensus 226 ~~~-~~~--~~a~----TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~ 281 (586)
T TIGR01447 226 LIA-ALP--SEAV----TIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLK 281 (586)
T ss_pred hhh-ccc--cccc----hhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHH
Confidence 000 000 0000 00011110 0011223468999999998887777777765
No 136
>COG4889 Predicted helicase [General function prediction only]
Probab=98.22 E-value=5.7e-06 Score=72.69 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=80.1
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAVLG-----MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~~g-----~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
++...+.-..-.+|+|+|+.|+....+| +.-+|. .+|+|||.+.+ -+.+.+-. .++|+++|+..|..|.
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIM-AcGTGKTfTsL-kisEala~----~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIM-ACGTGKTFTSL-KISEALAA----ARILFLVPSISLLSQT 222 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEE-ecCCCccchHH-HHHHHHhh----hheEeecchHHHHHHH
Confidence 4444454445568999999999988865 444544 47999998753 33333322 5899999999999996
Q ss_pred HHHHHHHHhhCCCeEEEEEECCCchHHh-----------------------HHHHhcCCC--eEEEeecC--------cc
Q psy1539 99 SKEYERFSKYMSNIKVGVFFGGLPIQKD-----------------------EEYLKTHNP--QIVGLVNY--------ET 145 (175)
Q Consensus 99 ~~~~~~~~~~~~~i~v~~~~g~~~~~~~-----------------------~~~l~~~~~--iiv~l~~~--------~~ 145 (175)
.+.+..=.+. .++...++++...... ++..++... ++.++.+. ..
T Consensus 223 lrew~~~~~l--~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~ 300 (1518)
T COG4889 223 LREWTAQKEL--DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEA 300 (1518)
T ss_pred HHHHhhccCc--cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHc
Confidence 6665443222 5666666666443221 111122222 33333332 45
Q ss_pred CCCCceEEEEeCCC
Q psy1539 146 NLSGVVVNVMDVRS 159 (175)
Q Consensus 146 ~~~~~~~lVlDEad 159 (175)
-+..++++|.|||+
T Consensus 301 G~~~fDliicDEAH 314 (1518)
T COG4889 301 GLDEFDLIICDEAH 314 (1518)
T ss_pred CCCCccEEEecchh
Confidence 67889999999993
No 137
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.21 E-value=7.9e-06 Score=64.29 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=53.9
Q ss_pred CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-CCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 37 QTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
+|+-|.+++.. ...+++|.|+.|||||.+.+.-++..+... -...+.+++++|+..+.++.+.+......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 47889999877 788999999999999988766665555443 34457999999999999999998887544
No 138
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.17 E-value=8.9e-06 Score=71.80 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=62.4
Q ss_pred CcHHHHHhHHHHhcC---C-cEEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEecCHHHHHHHHHHHHHHHhhC
Q psy1539 37 QTSFQHECIPQAVLG---M-DILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSKYM 109 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g---~-~~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (175)
..+.|..++..+.+. . .+++.+|||.|||.+.+.++...... .....+.+++.|++.+++++++.++.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 488999999877754 4 88999999999999999988887765 3467799999999999999999999887654
No 139
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.16 E-value=3.3e-06 Score=59.44 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=54.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 129 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~ 129 (175)
+|+-.++-..+|+|||--.+.-++..... .+.++|+|.|||.++..+.+.++.. .+++.. ... .. .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t---~~~-~~---~ 68 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVAEEMYEALKGL-----PVRFHT---NAR-MR---T 68 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHHHHHHHHTTTS-----SEEEES---TTS-S-----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHHHHHHHHHhcC-----CcccCc---eee-ec---c
Confidence 45667788999999998776666665443 4558999999999998877766532 333321 110 00 0
Q ss_pred HhcCCCeEEE--------eecCccCCCCceEEEEeCCC
Q psy1539 130 LKTHNPQIVG--------LVNYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 130 l~~~~~iiv~--------l~~~~~~~~~~~~lVlDEad 159 (175)
-..+..+-+. +.+ .....+.+++|+||++
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH 105 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECH 105 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT
T ss_pred ccCCCcccccccHHHHHHhcC-cccccCccEEEEeccc
Confidence 1112222222 222 4556799999999994
No 140
>KOG1123|consensus
Probab=98.13 E-value=3.1e-06 Score=70.27 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=89.2
Q ss_pred CCcHHHHHhHHHHhc-C--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 36 EQTSFQHECIPQAVL-G--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~-g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
.++|+|..++..+.. | ++-+|..|.|+|||++-+-+++.. ...+|++|.+---+.|+..++..+..-- .-
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~-d~ 374 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ-DD 374 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccC-cc
Confidence 578999999998884 4 788999999999998765544322 1268999999999999999999887654 45
Q ss_pred EEEEEECCCchHHhHHHHhcCCCeEEEeecC----------------ccCCCCceEEEEeCCCCC---CHHHHHHHHhhh
Q psy1539 113 KVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY----------------ETNLSGVVVNVMDVRSGG---WWLDLEALILSK 173 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~----------------~~~~~~~~~lVlDEad~~---f~~~v~~il~~~ 173 (175)
.++.++++... ....++.++|.+... .+.-+.-.++++||++-. ...-|-.|+.++
T Consensus 375 ~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH 449 (776)
T KOG1123|consen 375 QICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH 449 (776)
T ss_pred ceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH
Confidence 57777766532 233577888872111 122245689999999532 223455666666
Q ss_pred cC
Q psy1539 174 CA 175 (175)
Q Consensus 174 ~~ 175 (175)
|+
T Consensus 450 cK 451 (776)
T KOG1123|consen 450 CK 451 (776)
T ss_pred hh
Confidence 63
No 141
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.09 E-value=7.7e-05 Score=67.63 Aligned_cols=112 Identities=21% Similarity=0.132 Sum_probs=74.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~ 131 (175)
+.-+|+--+|||||++-+..+-. +......+.+++|+-.++|-.|+.+.+..+.... .... ...+..+-.+.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~-~~~~----~~~s~~~Lk~~l~ 347 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVA-FNDP----KAESTSELKELLE 347 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhccCCCeEEEEechHHHHHHHHHHHHHHHHhh-hhcc----cccCHHHHHHHHh
Confidence 56899999999999876544332 2233677899999999999999999999998764 1111 2334344445555
Q ss_pred cCC-CeEEEeecCc----------cCCCCceEEEEeCCCCCCHHHHHHH
Q psy1539 132 THN-PQIVGLVNYE----------TNLSGVVVNVMDVRSGGWWLDLEAL 169 (175)
Q Consensus 132 ~~~-~iiv~l~~~~----------~~~~~~~~lVlDEad~~f~~~v~~i 169 (175)
.+. .+|+++++.. ..-.+=-.+|+|||+.+..+.....
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~ 396 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKL 396 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHH
Confidence 443 6888866650 1123445679999975544444433
No 142
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.07 E-value=8.6e-05 Score=64.22 Aligned_cols=131 Identities=18% Similarity=0.090 Sum_probs=72.1
Q ss_pred cHHHHHhHHHHhcCCcEEEEcCCCChHHHHHH--HHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFV--LATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~--~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.+.|+.|+-..+.++-.+|.+++|+|||.+.. +..+.... .....++.+.+||..=+..+.+.+....... ++.-.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~-~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~-~~~~~ 231 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLA-DGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDE 231 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCCcEEEEECCcHHHHHHHHHHHHhhhhcc-ccchh
Confidence 58999999999999999999999999996532 22222221 1223578888999888887777665433322 11000
Q ss_pred EEECCCc-hHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 116 VFFGGLP-IQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 116 ~~~g~~~-~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
. ..... ...-+..+..-.+.=-....+..+.-..+++|+||++|.-...+..++.
T Consensus 232 ~-~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~ 287 (615)
T PRK10875 232 Q-KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLID 287 (615)
T ss_pred h-hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHH
Confidence 0 00000 0011111110000000000011223356899999998877777776665
No 143
>PRK10536 hypothetical protein; Provisional
Probab=98.05 E-value=0.00012 Score=56.56 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=45.1
Q ss_pred CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
.++...+..|...+..+.++..+++.+|+|+|||+......++.+..+ .-.++++.-|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCC
Confidence 344556889999999999989999999999999988777676665442 2334555556644
No 144
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.98 E-value=3.2e-05 Score=69.14 Aligned_cols=119 Identities=18% Similarity=0.079 Sum_probs=84.2
Q ss_pred CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEE
Q psy1539 37 QTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 116 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~ 116 (175)
|+++|...--.+ ...-+....||-|||++..+|+.-.... |..+-+++..--||..=.+++..+.+.+ |++|++
T Consensus 139 ~ydVQLiGgivL--h~G~IAEM~TGEGKTLvatlp~yLnAL~---G~gVHvVTvNDYLA~RDaewm~p~y~fl-GLtVg~ 212 (1025)
T PRK12900 139 PYDVQLIGGIVL--HSGKISEMATGEGKTLVSTLPTFLNALT---GRGVHVVTVNDYLAQRDKEWMNPVFEFH-GLSVGV 212 (1025)
T ss_pred ccchHHhhhHHh--hcCCccccCCCCCcchHhHHHHHHHHHc---CCCcEEEeechHhhhhhHHHHHHHHHHh-CCeeee
Confidence 555665543333 3455789999999999999998765554 3357788888899998888899998888 999999
Q ss_pred EECCCchHHhHHHHhcCCCeEEE---------eecC------ccCCCCceEEEEeCCCCCCH
Q psy1539 117 FFGGLPIQKDEEYLKTHNPQIVG---------LVNY------ETNLSGVVVNVMDVRSGGWW 163 (175)
Q Consensus 117 ~~g~~~~~~~~~~l~~~~~iiv~---------l~~~------~~~~~~~~~lVlDEad~~f~ 163 (175)
+..+.+..+..+.. .|+|..| |.++ ....+.+.+.|+||+|....
T Consensus 213 i~~~~~~~~Rr~aY--~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLI 272 (1025)
T PRK12900 213 ILNTMRPEERREQY--LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLI 272 (1025)
T ss_pred eCCCCCHHHHHHhC--CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhh
Confidence 87766544333333 5799988 2222 22346788999999964333
No 145
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.98 E-value=8.3e-05 Score=65.59 Aligned_cols=119 Identities=13% Similarity=0.021 Sum_probs=70.4
Q ss_pred CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.++ .+++-|++|+..+..++-.++.++.|+|||... -.++..+....+...+++.+||-.-+..+.+.. +
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~--------g 389 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT--------G 389 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc--------C
Confidence 444 689999999999998899999999999999643 344444443221246888899987776543321 1
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.....+ - +.+.....-.. ..........+++|+|||.|.-...+..++.
T Consensus 390 ~~a~Ti------h---~lL~~~~~~~~--~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~ 438 (720)
T TIGR01448 390 LTASTI------H---RLLGYGPDTFR--HNHLEDPIDCDLLIVDESSMMDTWLALSLLA 438 (720)
T ss_pred CccccH------H---HHhhccCCccc--hhhhhccccCCEEEEeccccCCHHHHHHHHH
Confidence 111000 0 00000000000 0000112457899999998877777777765
No 146
>KOG0389|consensus
Probab=97.93 E-value=7.8e-05 Score=64.85 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=82.3
Q ss_pred CcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 37 QTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 37 ~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
+-++|.--+..+. .+-+.|+.-.-|-|||. =+++.+..+.......--||+||...|- .+++.+.+-+|.+
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTi-QvIaFlayLkq~g~~gpHLVVvPsSTle----NWlrEf~kwCPsl 474 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTI-QVIAFLAYLKQIGNPGPHLVVVPSSTLE----NWLREFAKWCPSL 474 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchh-HHHHHHHHHHHcCCCCCcEEEecchhHH----HHHHHHHHhCCce
Confidence 7789988876543 46777999999999994 3455566655443333479999987763 5666676667899
Q ss_pred EEEEEECCCchHHhHHHHhc----CCCeEEEeec---C------ccCCCCceEEEEeCCC
Q psy1539 113 KVGVFFGGLPIQKDEEYLKT----HNPQIVGLVN---Y------ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~----~~~iiv~l~~---~------~~~~~~~~~lVlDEad 159 (175)
+|...+|.....++++...+ +-++++++.+ . .+.-.++.++|.||++
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgH 534 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGH 534 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchh
Confidence 99999999876666654332 3467776222 1 2344589999999994
No 147
>KOG0952|consensus
Probab=97.92 E-value=5.4e-06 Score=73.69 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=91.2
Q ss_pred CCCCcHHHHHhHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCe
Q psy1539 34 FREQTSFQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 112 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~-g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i 112 (175)
++...|+|.+.+-.... ..+.++-+|||+|||++|.+++...+... .+.++++++|..+|+....+.+.+.... +|+
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-p~~kvvyIap~kalvker~~Dw~~r~~~-~g~ 1002 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-PGSKVVYIAPDKALVKERSDDWSKRDEL-PGI 1002 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-CCccEEEEcCCchhhcccccchhhhccc-CCc
Confidence 44667788887755554 47899999999999999999988776654 3469999999999998877777665544 499
Q ss_pred EEEEEECCCchHHhHHHHhcCCCeEEE-------eec---CccCCCCceEEEEeCC
Q psy1539 113 KVGVFFGGLPIQKDEEYLKTHNPQIVG-------LVN---YETNLSGVVVNVMDVR 158 (175)
Q Consensus 113 ~v~~~~g~~~~~~~~~~l~~~~~iiv~-------l~~---~~~~~~~~~~lVlDEa 158 (175)
++.-+.|+...+ ...+.. .+++|. ..+ ....++++..+|+||.
T Consensus 1003 k~ie~tgd~~pd--~~~v~~-~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~ 1055 (1230)
T KOG0952|consen 1003 KVIELTGDVTPD--VKAVRE-ADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEI 1055 (1230)
T ss_pred eeEeccCccCCC--hhheec-CceEEcccccccCccccccchhhhccccceeeccc
Confidence 999999987643 444443 467776 222 2567889999999998
No 148
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.83 E-value=0.00065 Score=61.66 Aligned_cols=113 Identities=16% Similarity=0.020 Sum_probs=72.3
Q ss_pred CCCCCCcHHHHHhHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 32 QPFREQTSFQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~-~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
.|+ .+++-|.+|+..++.++ -+++.++.|+|||.. +-++...+.. .+.+++.++||-.-+..+.+ ..
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~L~e-------~t- 410 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAENLEG-------GS- 410 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHHHhh-------cc-
Confidence 454 58999999999999865 478999999999975 3444444443 45689999999766544322 11
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
++... ........+..+ ...+....++|+||+.|.-..++..+|..
T Consensus 411 Gi~a~------TI~sll~~~~~~----------~~~l~~~~vlIVDEASMv~~~~m~~LL~~ 456 (988)
T PRK13889 411 GIASR------TIASLEHGWGQG----------RDLLTSRDVLVIDEAGMVGTRQLERVLSH 456 (988)
T ss_pred Ccchh------hHHHHHhhhccc----------ccccccCcEEEEECcccCCHHHHHHHHHh
Confidence 22211 111111111111 12345778999999998888888888753
No 149
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.82 E-value=6.2e-05 Score=63.07 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=52.3
Q ss_pred CCcHHHHHhHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 36 EQTSFQHECIPQAVLG-----MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g-----~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
.|+.-|-+||..+.+| +.-.+.+.||||||.+..--+. ... .-+||++|.+.||-|++..++.|...
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~-~~~-----rPtLV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIA-KVQ-----RPTLVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHH-HhC-----CCeEEEecchhHHHHHHHHHHHhCcC
Confidence 5788888898777654 6788899999999987544332 222 14899999999999999999988644
No 150
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.80 E-value=0.00096 Score=59.21 Aligned_cols=123 Identities=14% Similarity=0.021 Sum_probs=75.1
Q ss_pred CCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH
Q psy1539 21 RREKEDRIGESQPFREQTSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99 (175)
Q Consensus 21 l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (175)
+++..++.....++ .+++-|.+|+..++.+ +-+++.++.|+|||... -++...+.. .+.+++.++||-.-+..+.
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--CCCeEEEEeCcHHHHHHHH
Confidence 44444443333333 5899999999998874 67899999999999643 334444433 3567999999976655433
Q ss_pred HHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 100 KEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 100 ~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
+ .. ++....+ ......+.. ....+...+++|+||+.|.=..++..++.
T Consensus 414 ~-------~~-g~~a~Ti------~~~~~~~~~----------~~~~~~~~~llIvDEasMv~~~~~~~Ll~ 461 (744)
T TIGR02768 414 A-------ES-GIESRTL------ASLEYAWAN----------GRDLLSDKDVLVIDEAGMVGSRQMARVLK 461 (744)
T ss_pred h-------cc-CCceeeH------HHHHhhhcc----------CcccCCCCcEEEEECcccCCHHHHHHHHH
Confidence 2 11 3222111 111011111 11234678999999998877777777765
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.80 E-value=9.8e-05 Score=66.34 Aligned_cols=118 Identities=16% Similarity=0.040 Sum_probs=82.0
Q ss_pred CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEE
Q psy1539 37 QTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 116 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~ 116 (175)
|.++|.. -.+.-...-+....||-|||++..+|+.-.... |..+-+++..--||..=.+++..+.+.+ |+++++
T Consensus 170 ~yDVQli--GgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~---GkgVHvVTVNDYLA~RDaewmgply~fL-GLsvg~ 243 (1112)
T PRK12901 170 HYDVQLI--GGVVLHQGKIAEMATGEGKTLVATLPVYLNALT---GNGVHVVTVNDYLAKRDSEWMGPLYEFH-GLSVDC 243 (1112)
T ss_pred ccchHHh--hhhhhcCCceeeecCCCCchhHHHHHHHHHHHc---CCCcEEEEechhhhhccHHHHHHHHHHh-CCceee
Confidence 4555544 444445566789999999999999998766554 3357788888899988888888888888 999998
Q ss_pred EEC-CCchHHhHHHHhcCCCeEEE---------eecC------ccCCCCceEEEEeCCCCCC
Q psy1539 117 FFG-GLPIQKDEEYLKTHNPQIVG---------LVNY------ETNLSGVVVNVMDVRSGGW 162 (175)
Q Consensus 117 ~~g-~~~~~~~~~~l~~~~~iiv~---------l~~~------~~~~~~~~~lVlDEad~~f 162 (175)
+.. +.+. ++.+.. =.|+|..+ |.++ ....+.+.+.|+||+|...
T Consensus 244 i~~~~~~~-~~rr~a-Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 244 IDKHQPNS-EARRKA-YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred cCCCCCCH-HHHHHh-CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 866 3333 333222 24799888 2222 2234568899999996433
No 152
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.79 E-value=0.00011 Score=59.92 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=42.3
Q ss_pred CcHHHHHhHHHH------hcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 37 QTSFQHECIPQA------VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 37 ~t~~Q~~~i~~~------~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
+++-|++++..+ .++.++++.++-|+|||.. +-.+...... .+..+++.+||-.=|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~-~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS-RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc-ccceEEEecchHHHHHhc
Confidence 678899998888 6789999999999999864 3333333322 345788888986555444
No 153
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.69 E-value=0.00015 Score=58.84 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=38.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
-++|.+..|||||+..+ -++..+.....+.+++++++...|...+++.+..-
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhccccCCceEEEEecchHHHHHHHHHhhh
Confidence 47899999999997654 34444422335568999999999998877776544
No 154
>KOG1805|consensus
Probab=97.67 E-value=0.00056 Score=60.92 Aligned_cols=130 Identities=16% Similarity=0.077 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 19 RNRREKEDRIGESQPFREQTSFQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 19 ~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~-~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
..+.|.+.+. -+..++.-|++|+-.++..+| .+|.+=+|+|||..-. .++..+.. .+.++|..+-|..=+.-
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~--~gkkVLLtsyThsAVDN 728 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVA--LGKKVLLTSYTHSAVDN 728 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHH--cCCeEEEEehhhHHHHH
Confidence 3444454443 234789999999998887754 6888999999996532 23333332 34467777777655544
Q ss_pred HHHHHHHHHhhCCCeEEEEEECCCchHHhH-----------------HHHhcCCCeEEE----eecCccCCCCceEEEEe
Q psy1539 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKDE-----------------EYLKTHNPQIVG----LVNYETNLSGVVVNVMD 156 (175)
Q Consensus 98 ~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~-----------------~~l~~~~~iiv~----l~~~~~~~~~~~~lVlD 156 (175)
+.-.++.+ ++.+..+..+.....+. +...+...|+.+ +.+..+..+++++.|+|
T Consensus 729 ILiKL~~~-----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiD 803 (1100)
T KOG1805|consen 729 ILIKLKGF-----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIID 803 (1100)
T ss_pred HHHHHhcc-----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEc
Confidence 43333333 33333333332222222 233333444444 22225666789999999
Q ss_pred CCCC
Q psy1539 157 VRSG 160 (175)
Q Consensus 157 Ead~ 160 (175)
||.+
T Consensus 804 EASQ 807 (1100)
T KOG1805|consen 804 EASQ 807 (1100)
T ss_pred cccc
Confidence 9953
No 155
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.54 E-value=0.00047 Score=62.08 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=41.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
.|+.+..+||+|||.+|+-.++... ...+..+.||+||+.+.-..+.+.++
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~-~~~~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELH-QKYGLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHH-HHcCCcEEEEEeCCHHHHHHHHHHhh
Confidence 4889999999999999987776543 33455689999999999888876655
No 156
>KOG0390|consensus
Probab=97.53 E-value=0.0011 Score=58.45 Aligned_cols=121 Identities=18% Similarity=0.115 Sum_probs=78.7
Q ss_pred CCcHHHHHhHHHHhc---C-------CcEEEEcCCCChHHHHHHHHHHHhhhcCCCC-----eEEEEEecCHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVL---G-------MDILCQAKSGMGKTAVFVLATLQQLETTDSN-----VYVLVMCHTRELAFQISK 100 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~---g-------~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~-----~~~lil~Pt~~L~~q~~~ 100 (175)
.+.|+|++.+.-+++ | ...++.-..|+|||+- .++.+..+.+.... .++||++|. .|+.-+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 579999999987764 2 2467777889999964 35566655554444 579999997 58888999
Q ss_pred HHHHHHhhCCCeEEEEEECCCch--HHhHHHHhcC---C--CeEEE----eecC--ccCCCCceEEEEeCCC
Q psy1539 101 EYERFSKYMSNIKVGVFFGGLPI--QKDEEYLKTH---N--PQIVG----LVNY--ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 101 ~~~~~~~~~~~i~v~~~~g~~~~--~~~~~~l~~~---~--~iiv~----l~~~--~~~~~~~~~lVlDEad 159 (175)
.+.++.... .+....++|..+. ......+.-+ . ++.+. +.++ .+....+.++|+||.+
T Consensus 316 EF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 316 EFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCC
Confidence 999987653 6677777777652 0111111111 1 12121 1111 4566789999999993
No 157
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.48 E-value=0.0048 Score=56.68 Aligned_cols=125 Identities=15% Similarity=0.030 Sum_probs=78.4
Q ss_pred CCCHHHHHHHhhCCCCCCcHHHHHhHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 20 NRREKEDRIGESQPFREQTSFQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 20 ~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~-g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
++++..++.....++ .+++-|.+|+..+.. ++-.++.++.|+|||... -++...+.. .+.+++-++||-.=+..+
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCCeEEEEcCcHHHHHHH
Confidence 455666665544444 689999999998764 467899999999999643 344444443 456889999996665443
Q ss_pred HHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 99 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 99 ~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
.+ .. ++....+. .....+..+ ...+..-.++|+||+.|.=..++..++..
T Consensus 442 ~e-------~~-Gi~a~TIa------s~ll~~~~~----------~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~ 491 (1102)
T PRK13826 442 EK-------EA-GIQSRTLS------SWELRWNQG----------RDQLDNKTVFVLDEAGMVASRQMALFVEA 491 (1102)
T ss_pred HH-------hh-CCCeeeHH------HHHhhhccC----------ccCCCCCcEEEEECcccCCHHHHHHHHHH
Confidence 22 22 43332211 111111111 12355677999999998888888877653
No 158
>KOG0387|consensus
Probab=97.47 E-value=0.00091 Score=58.50 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=56.4
Q ss_pred CCcHHHHHhHHHHh----cCCcEEEEcCCCChHHH---HHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 36 EQTSFQHECIPQAV----LGMDILCQAKSGMGKTA---VFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~---~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
.+.++|++.+..++ ++..-|+--.-|-|||+ +|+-++.+. . +-...+|||||.. +..|+.+.+..+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S-~--k~~~paLIVCP~T-ii~qW~~E~~~w~-- 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHS-G--KLTKPALIVCPAT-IIHQWMKEFQTWW-- 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhc-c--cccCceEEEccHH-HHHHHHHHHHHhC--
Confidence 56789999987766 46788889999999994 333333222 1 1223699999984 6678777777775
Q ss_pred CCCeEEEEEECCCc
Q psy1539 109 MSNIKVGVFFGGLP 122 (175)
Q Consensus 109 ~~~i~v~~~~g~~~ 122 (175)
|.+++..++|..+
T Consensus 279 -p~~rv~ilh~t~s 291 (923)
T KOG0387|consen 279 -PPFRVFILHGTGS 291 (923)
T ss_pred -cceEEEEEecCCc
Confidence 5678888887655
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.46 E-value=0.00073 Score=59.52 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=38.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
.-.+|.||.|||||.+..-.+-+.+. ....++++++..+.|+.+....++..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~ 101 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKA 101 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhc
Confidence 44689999999999766444333332 24458999999999999988877654
No 160
>KOG0385|consensus
Probab=97.42 E-value=0.0014 Score=57.36 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=76.5
Q ss_pred CCcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhc--CCCCeEEEEEecCHHHHHHHHHHHHHHHhhC
Q psy1539 36 EQTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLET--TDSNVYVLVMCHTRELAFQISKEYERFSKYM 109 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~--~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (175)
.++++|.+-+..+. +|-|.++.-.-|-|||+- .++++.++.. +..|| -||++|...|. .+.+.+.+..
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~GP-fLVi~P~StL~----NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPGP-FLVIAPKSTLD----NWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCCC-eEEEeeHhhHH----HHHHHHHHhC
Confidence 57899999876554 688999999999999954 3444444432 23444 68899988775 3455555556
Q ss_pred CCeEEEEEECCCchHHhH-HH-Hhc-CCCeEEE-----eecC-ccCCCCceEEEEeCCC
Q psy1539 110 SNIKVGVFFGGLPIQKDE-EY-LKT-HNPQIVG-----LVNY-ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 110 ~~i~v~~~~g~~~~~~~~-~~-l~~-~~~iiv~-----l~~~-~~~~~~~~~lVlDEad 159 (175)
|++++..++|+....... +. +.. .-+++|+ +.+. .+.--+=+++|+|||+
T Consensus 241 P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaH 299 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAH 299 (971)
T ss_pred CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhh
Confidence 899999999987432222 11 222 3456665 2222 2223356999999994
No 161
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.35 E-value=0.00069 Score=59.50 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=52.9
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.+++-|++|+.. ....++|.|+.|||||.+...-+...+.. .-...++++++.|+.-|.++.+.+.+...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999998864 34577889999999998866555555543 22234799999999999999988877643
No 162
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.00044 Score=61.61 Aligned_cols=113 Identities=15% Similarity=0.023 Sum_probs=59.9
Q ss_pred cHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEE
Q psy1539 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 117 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~ 117 (175)
+....+.+..+.+..-++|+++||||||...-.-+++.-. ..+.+..+.=|.|-=|.-+.+.+.+-...-.|-.|+.-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 4445555666777889999999999999754333333322 12224555558775554444443332221123334332
Q ss_pred ECCCchHHhHHHHhcCCCeEEE-------eecCccCCCCceEEEEeCC
Q psy1539 118 FGGLPIQKDEEYLKTHNPQIVG-------LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 118 ~g~~~~~~~~~~l~~~~~iiv~-------l~~~~~~~~~~~~lVlDEa 158 (175)
.-..+.... ...+-+. .+.....++..+++|+|||
T Consensus 130 iRfe~~~s~------~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEa 171 (845)
T COG1643 130 IRFESKVSP------RTRIKVMTDGILLREIQNDPLLSGYSVVIIDEA 171 (845)
T ss_pred EEeeccCCC------CceeEEeccHHHHHHHhhCcccccCCEEEEcch
Confidence 221111110 1122222 2222456899999999999
No 163
>KOG1803|consensus
Probab=97.31 E-value=0.00077 Score=57.33 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=50.7
Q ss_pred CCcHHHHHhHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
.+.+-|++|+....+. .-.++++|+|+|||.+...-+.+.+.. +.++|+.+||.+-+.-+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHH
Confidence 5788999999888877 557899999999998876666665554 34899999999888777774
No 164
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.29 E-value=0.0019 Score=56.73 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=51.6
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-CCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
..+++-|++|+-. ...+++|.|..|||||.+..--+...+... -...++++++.|+..|..+.+.+.....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 4689999998853 335689999999999987654443333222 2334799999999999999888776543
No 165
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.28 E-value=0.0012 Score=52.89 Aligned_cols=68 Identities=24% Similarity=0.212 Sum_probs=43.1
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQ-AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 94 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~-~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 94 (175)
.-++.+.+.|+ +++.|.+.+.. +..+++++++++|||||| +++-+++..+.......+.+++=.+.|+
T Consensus 122 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 122 FTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 34555666564 56778887764 446799999999999999 5556666554211222345555555554
No 166
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0032 Score=48.81 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=45.5
Q ss_pred HhhCCCCCCcHHHHHhHHHHh-------cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH
Q psy1539 29 GESQPFREQTSFQHECIPQAV-------LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~-------~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
+....|......+..++..+. ++.++++.||+|+|||..+ .++...+.. .+ ..++++++.+++.++...
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa-~Ai~~~l~~--~g-~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLA-IAIGNELLK--AG-ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHH-HHHHHHHHH--cC-CeEEEEEHHHHHHHHHHH
Confidence 344445555666666554333 5789999999999999643 344444442 34 455666888888776665
Q ss_pred HH
Q psy1539 102 YE 103 (175)
Q Consensus 102 ~~ 103 (175)
+.
T Consensus 152 ~~ 153 (254)
T COG1484 152 FD 153 (254)
T ss_pred Hh
Confidence 44
No 167
>KOG1002|consensus
Probab=97.27 E-value=0.0027 Score=53.25 Aligned_cols=95 Identities=23% Similarity=0.232 Sum_probs=65.3
Q ss_pred CCcHHHHHhHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 36 EQTSFQHECIPQAVLG-----MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g-----~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
.+-|+|.+.+-.+... ..-++.-.-|.|||+-.+.-++.. ..+...|+++|+.+|. |+.+.+.+....
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----~~ra~tLVvaP~VAlm-QW~nEI~~~T~g-- 256 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----VDRAPTLVVAPTVALM-QWKNEIERHTSG-- 256 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----cccCCeeEEccHHHHH-HHHHHHHHhccC--
Confidence 4678999887555432 355677789999997655444443 2334599999999985 778888877663
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEE
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~ 139 (175)
..++-..+|... ....+.+.+ .++++.
T Consensus 257 slkv~~YhG~~R-~~nikel~~-YDvVLT 283 (791)
T KOG1002|consen 257 SLKVYIYHGAKR-DKNIKELMN-YDVVLT 283 (791)
T ss_pred ceEEEEEecccc-cCCHHHhhc-CcEEEE
Confidence 566766666543 566666654 577776
No 168
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0022 Score=52.42 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=45.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec-C-HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH-T-RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 128 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P-t-~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~ 128 (175)
|..+++.+|||+|||....--....... .+..++.++.. + |.=+ .++++.+.+.+ ++.+.....+........
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~~V~lit~D~~R~ga---~EqL~~~a~~~-gv~~~~~~~~~~l~~~l~ 211 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR-FGASKVALLTTDSYRIGG---HEQLRIFGKIL-GVPVHAVKDGGDLQLALA 211 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecccccccH---HHHHHHHHHHc-CCceEecCCcccHHHHHH
Confidence 5789999999999997654322222222 12124444432 2 2222 34566666666 777766655555555444
Q ss_pred HHhcCCCeEEE
Q psy1539 129 YLKTHNPQIVG 139 (175)
Q Consensus 129 ~l~~~~~iiv~ 139 (175)
.+.+ +++|+.
T Consensus 212 ~l~~-~DlVLI 221 (374)
T PRK14722 212 ELRN-KHMVLI 221 (374)
T ss_pred HhcC-CCEEEE
Confidence 4443 455544
No 169
>KOG0953|consensus
Probab=97.26 E-value=0.00049 Score=58.05 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=60.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~ 131 (175)
+=++=++||.||||.- +++++...+ .+++-.|.|-||.++++.++.. |+.|-+++|.......-. -
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~--~ 257 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN--G 257 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC--C
Confidence 3466688999999964 466776544 4678889999999999988766 788888888643211100 0
Q ss_pred cCCCeEEEeecCccCCCCceEEEEeCC
Q psy1539 132 THNPQIVGLVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 132 ~~~~iiv~l~~~~~~~~~~~~lVlDEa 158 (175)
+.+.++=+++...---...+..|+||.
T Consensus 258 ~~a~hvScTVEM~sv~~~yeVAViDEI 284 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVSVNTPYEVAVIDEI 284 (700)
T ss_pred CcccceEEEEEEeecCCceEEEEehhH
Confidence 112333333433222356788999998
No 170
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.25 E-value=0.0015 Score=52.34 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=39.7
Q ss_pred HHHhhCCCCCCcHHHHHhHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHH
Q psy1539 27 RIGESQPFREQTSFQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 94 (175)
Q Consensus 27 ~~l~~~g~~~~t~~Q~~~i~~~~-~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 94 (175)
+.+.+.|. +++.|...+..+. .+.|++++++||||||. ++-+++..+.....+-+.+.+=.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCCCCceEEEecCCccc
Confidence 34555554 5777887775544 56899999999999995 445666655321122244444444443
No 171
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.24 E-value=0.0023 Score=51.72 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=51.1
Q ss_pred CCCCCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 32 QPFREQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
.|...-+..|.-|+..++.. .=+.+.++-|||||+.++.+.+......+...+.++--|+..+.+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~d 291 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGED 291 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccc
Confidence 36666677899999988875 5577889999999999888888877665566677777787766644
No 172
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.22 E-value=0.0087 Score=49.09 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC-HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT-RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 129 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt-~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~ 129 (175)
++.+.+.||||-|||.+..=-+.......++..-+||=.-| |-=| .++++.+++.+ ++.+.++.......+.+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA---~EQLk~Ya~im-~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA---VEQLKTYADIM-GVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH---HHHHHHHHHHh-CCceEEecCHHHHHHHHHH
Confidence 78899999999999977542222222122233345555544 4444 34567777777 8888888887777777777
Q ss_pred HhcCCCeEEE
Q psy1539 130 LKTHNPQIVG 139 (175)
Q Consensus 130 l~~~~~iiv~ 139 (175)
+.+ +++|+.
T Consensus 279 l~~-~d~ILV 287 (407)
T COG1419 279 LRD-CDVILV 287 (407)
T ss_pred hhc-CCEEEE
Confidence 765 577665
No 173
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.20 E-value=0.0019 Score=56.46 Aligned_cols=66 Identities=27% Similarity=0.343 Sum_probs=51.4
Q ss_pred CCcHHHHHhHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 36 EQTSFQHECIPQAVLG-----MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g-----~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.|+..|..++..+.++ +..++.+.||||||+...- ++..+ +..+|||+|+..+|.|+++.++.|..
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-----~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-----NRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 5899999999887654 3667999999999976432 33332 12589999999999999999998863
No 174
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.19 E-value=0.0021 Score=51.04 Aligned_cols=68 Identities=26% Similarity=0.270 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 94 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~-~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 94 (175)
.-++.+.+.|. +++-|.+.+..+. .+.+++++++||||||. ++-.++..+.......+++.+=.+.|+
T Consensus 106 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 106 FTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhccCCCceEEEECCchhh
Confidence 34555555553 5666666665444 56899999999999995 445566655432223355555555555
No 175
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.17 E-value=0.0014 Score=58.05 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=53.7
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
..+++-|++|+.. ...+++|.|..|||||.+...=+...+.. .-...++|+++.|+.-|.+..+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999998854 34679999999999998765544444432 22334789999999999999998887754
No 176
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.15 E-value=0.0018 Score=56.71 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=52.5
Q ss_pred CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 37 QTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
+++-|++++.. ...+++|.|+.|||||.+..--+...+.. .....+.++++.|+.-+.+..+.+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68999998754 35689999999999998766655555533 22334689999999999999988877543
No 177
>KOG0920|consensus
Probab=97.12 E-value=0.0055 Score=55.04 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=73.2
Q ss_pred CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEE
Q psy1539 37 QTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 116 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~ 116 (175)
.+..+.+.+..+.+...++|++.||+|||.=.-.-+++.........+.++=-|.|--|.-+.+.+..=.....+-.|+.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 36677777888999999999999999999865555565543333444555555888877777776544332222544444
Q ss_pred EECCCchHHhHHHHhcCCCeEEE----eecC---ccCCCCceEEEEeCC
Q psy1539 117 FFGGLPIQKDEEYLKTHNPQIVG----LVNY---ETNLSGVVVNVMDVR 158 (175)
Q Consensus 117 ~~g~~~~~~~~~~l~~~~~iiv~----l~~~---~~~~~~~~~lVlDEa 158 (175)
-.+..+.... ...+..+ +++. ...+.++.++|+||+
T Consensus 254 qvrl~~~~s~------~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEV 296 (924)
T KOG0920|consen 254 QVRLESKRSR------ETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEV 296 (924)
T ss_pred EEeeecccCC------ceeEEEecHHHHHHHhccCcccccCceeeeeeE
Confidence 3333221111 1234444 2222 566789999999999
No 178
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.10 E-value=0.0019 Score=57.17 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
..+++-|++|+.. ....++|.|+.|||||.+...=+...+.. .-...++|+++-|+.-|.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999998864 34688999999999998765544444432 22334699999999999999998887754
No 179
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.04 E-value=0.0031 Score=59.02 Aligned_cols=69 Identities=28% Similarity=0.269 Sum_probs=54.9
Q ss_pred CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 37 QTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.|+-|.++|. ..|++++|.|.-|||||.+..--++..+.....--+.++++=|+.-+.+..+.+++-..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5899999997 46899999999999999887766666665432223689999999999998888776544
No 180
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.01 E-value=0.027 Score=38.39 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
++.+++.+|+|+|||.. +-.+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 68899999999999953 33344433
No 181
>KOG0391|consensus
Probab=97.00 E-value=0.0023 Score=58.45 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=78.3
Q ss_pred CcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhh-cCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 37 QTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLE-TTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 37 ~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
++.||..-+..+. ++-|-|+.-.-|-|||+- .+.++.++- .+.+..--||+|||.-+. -+.-.+++|+ |+
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnWGPHLIVVpTsviL-nWEMElKRwc---Pg 690 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNWGPHLIVVPTSVIL-NWEMELKRWC---PG 690 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCCCCceEEeechhhh-hhhHHHhhhC---Cc
Confidence 4678888776543 356889999999999954 345555542 334444578999997654 3344466664 79
Q ss_pred eEEEEEECCCchH-HhHHHHhcCCCeEEEeecC--------ccCCCCceEEEEeCCC--CCCHH
Q psy1539 112 IKVGVFFGGLPIQ-KDEEYLKTHNPQIVGLVNY--------ETNLSGVVVNVMDVRS--GGWWL 164 (175)
Q Consensus 112 i~v~~~~g~~~~~-~~~~~l~~~~~iiv~l~~~--------~~~~~~~~~lVlDEad--~~f~~ 164 (175)
+++..++|..... +..+.+.+-...-||+..+ .+.-.+-+|+|+|||. .+|..
T Consensus 691 lKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfks 754 (1958)
T KOG0391|consen 691 LKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKS 754 (1958)
T ss_pred ceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhH
Confidence 9999999976432 3333444433444554443 3334467899999993 34443
No 182
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.0065 Score=53.91 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=81.3
Q ss_pred HHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCC
Q psy1539 42 HECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 121 (175)
Q Consensus 42 ~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~ 121 (175)
.+.+..+.....-+....||-|||++..+|+.-.... +..+.+++-.--|+.-=..+...+.+.. |+++++...+.
T Consensus 84 VQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---gkgVhvVTvNdYLA~RDae~m~~l~~~L-GlsvG~~~~~m 159 (822)
T COG0653 84 VQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---GKGVHVVTVNDYLARRDAEWMGPLYEFL-GLSVGVILAGM 159 (822)
T ss_pred HHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---CCCcEEeeehHHhhhhCHHHHHHHHHHc-CCceeeccCCC
Confidence 3334444445666789999999999999988655443 3357888888889888888888888888 99999999998
Q ss_pred chHHhHHHHhcCCCeEEEeec---------C------ccCCCCceEEEEeCCC
Q psy1539 122 PIQKDEEYLKTHNPQIVGLVN---------Y------ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 122 ~~~~~~~~l~~~~~iiv~l~~---------~------~~~~~~~~~lVlDEad 159 (175)
+..+..+... |+|..++.+ . ......+.+.|+||+|
T Consensus 160 ~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 160 SPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred ChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 7666666663 688887111 1 2233467888888884
No 183
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0075 Score=49.60 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=33.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEEE
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGV 116 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~~ 116 (175)
..+++.+|||+|||.+..--+...... ...+.++.++. +.|.-+.. +++.+.+.. ++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~l-gvpv~~ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIM-GIPVKA 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcC-CcceEe
Confidence 578999999999997754322221111 12233454444 33444433 366666655 665543
No 184
>PRK04296 thymidine kinase; Provisional
Probab=96.91 E-value=0.0027 Score=46.97 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
|.=.++.+|+|+|||...+ -.+.++.. .+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l-~~~~~~~~--~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELL-QRAYNYEE--RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHH-HHHHHHHH--cCCeEEEEec
Confidence 3446889999999996554 33444332 3457888876
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.85 E-value=0.033 Score=42.43 Aligned_cols=97 Identities=19% Similarity=0.069 Sum_probs=64.2
Q ss_pred cccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 16 LSSRNRREKEDRIGESQPFREQTSFQHECIPQAVL---GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 16 ~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~---g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
|+...-+..++=.+.. ++ -.++.|.+....+.+ |+|.+.+.-.|.|||.+ ++|++.....+.+ .-+.+++|.
T Consensus 5 w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~-~LvrviVpk- 79 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS-RLVRVIVPK- 79 (229)
T ss_pred CCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC-cEEEEEcCH-
Confidence 3334444444443433 23 579999999888775 68999999999999954 6888887776433 345666664
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEE
Q psy1539 93 ELAFQISKEYERFSKYMSNIKVGVF 117 (175)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~i~v~~~ 117 (175)
+|..|..+.++.-....-+-++..+
T Consensus 80 ~Ll~q~~~~L~~~lg~l~~r~i~~l 104 (229)
T PF12340_consen 80 ALLEQMRQMLRSRLGGLLNRRIYHL 104 (229)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeEEe
Confidence 6889988887765443324444333
No 186
>KOG4150|consensus
Probab=96.80 E-value=0.00034 Score=59.33 Aligned_cols=130 Identities=9% Similarity=-0.085 Sum_probs=86.5
Q ss_pred HhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 29 GESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
++++.-.....+|.+++..+.+|+++++...|.+||.++|-......+... .....+++.|+.++++...+-+.-..+.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~V~~~~ 357 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-HATNSLLPSEMVEHLRNGSKGQVVHVEV 357 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-cccceecchhHHHHhhccCCceEEEEEe
Confidence 344444567899999999999999999999999999999988777655443 3346788999999987655443222222
Q ss_pred CCCeEE--EEEECCCchHHhHHHHhcCCCeEEE---------eecC---ccCCCCceEEEEeCCC
Q psy1539 109 MSNIKV--GVFFGGLPIQKDEEYLKTHNPQIVG---------LVNY---ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 109 ~~~i~v--~~~~g~~~~~~~~~~l~~~~~iiv~---------l~~~---~~~~~~~~~lVlDEad 159 (175)
.|..+. +-.+.+.+..+.....+.+...+.. |.++ ...+-...+++.||+.
T Consensus 358 I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 358 IKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred hhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 222222 2224444445566666677777766 2222 3334467788899983
No 187
>PRK08116 hypothetical protein; Validated
Probab=96.79 E-value=0.026 Score=44.11 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=27.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (175)
..+++.|++|+|||.. +.++.+.+... +..++ ..+..++..++.
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~~--~~~v~-~~~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIEK--GVPVI-FVNFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHHc--CCeEE-EEEHHHHHHHHH
Confidence 4599999999999954 34566666543 33344 445555655443
No 188
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.79 E-value=0.0086 Score=56.91 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=45.4
Q ss_pred CCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHH--HHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVF--VLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~--~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
.+++-|++|+..++.+ +-++|.+..|+|||... ++.++..+.. ..+..++.++||-.=+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHHH
Confidence 6899999999999865 78999999999999763 2333333222 2455788899997666554
No 189
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.77 E-value=0.0076 Score=49.56 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=67.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH-HHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHh
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE-LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 131 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~ 131 (175)
-.++.++.|||||.+...-++..+.....+.+++++.|+.. +-.-++..+......+ ++....-....+. .+. +.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~--~i~-~~ 78 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM--EIK-IL 78 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc--EEE-ec
Confidence 35789999999999988877777665424568899989865 6666777777665554 4332111111110 111 11
Q ss_pred c-CCCeEEE-eecC---ccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 132 T-HNPQIVG-LVNY---ETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 132 ~-~~~iiv~-l~~~---~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
+ |..++.. +-+. ......+.++.+|||+..-.+.++.++.+
T Consensus 79 ~~g~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~~~~~~l~~r 124 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTFEDIKELIPR 124 (396)
T ss_pred CCCeEEEeecccCChhHhhCcceeeeehhhhhhhcCHHHHHHHHHH
Confidence 2 3233333 3122 22233468999999975555566666543
No 190
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.026 Score=43.50 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=26.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
..+++.+++|+|||.. +.++...+.. .+..++++ +..++...+
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~--~g~~v~~i-t~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLL--RGKSVLII-TVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHh--cCCeEEEE-EHHHHHHHH
Confidence 4799999999999954 3455555543 23345554 444554443
No 191
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.73 E-value=0.024 Score=55.44 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=71.8
Q ss_pred CCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 36 EQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
.+++-|++|+..++.. +-.++.++.|+|||.. +-.++..+.. .+.+++.++||..-+.++.+....-. -+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g~~A-----~T 500 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE--QGYEIQIITAGSLSAQELRQKIPRLA-----ST 500 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhcchh-----hh
Confidence 5799999999988875 6789999999999964 3344444433 45689999999876655544321100 00
Q ss_pred EEEEECCCchHHhHHHHhcCCC-eEE-EeecCccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 114 VGVFFGGLPIQKDEEYLKTHNP-QIV-GLVNYETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~l~~~~~-iiv-~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
+ -.....+.++.. .-+ ++.+....+..-+++|+|||.|.=..++..++..
T Consensus 501 i---------~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~ 552 (1960)
T TIGR02760 501 F---------ITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDK 552 (1960)
T ss_pred H---------HHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 0 000000000000 000 0111122345678999999998888888888763
No 192
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.70 E-value=0.027 Score=55.06 Aligned_cols=112 Identities=17% Similarity=0.110 Sum_probs=68.6
Q ss_pred CCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHH---HHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhC
Q psy1539 35 REQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFV---LATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 109 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~---~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (175)
..+++.|++|+..++.+ +-++|.++.|+|||...- -++.+.+.. .+.+++.++||..=+.++.+ .
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L~~--------~ 1087 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGELKS--------A 1087 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHHh--------c
Confidence 36899999999998865 567889999999996541 233343332 45678889999766655432 1
Q ss_pred CCeEEEEEECCCchHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 110 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 110 ~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
++... -+..+..+.. ............++|+||+.|.=..++..++.
T Consensus 1088 -g~~a~----------Ti~s~l~~~~----~~~~~~~~~~~~v~ivDEasMv~~~~~~~l~~ 1134 (1960)
T TIGR02760 1088 -GVQAQ----------TLDSFLTDIS----LYRNSGGDFRNTLFILDESSMVSNFQLTHATE 1134 (1960)
T ss_pred -CCchH----------hHHHHhcCcc----cccccCCCCcccEEEEEccccccHHHHHHHHH
Confidence 22211 0111110000 00001113456899999998887888877764
No 193
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.68 E-value=0.0062 Score=49.83 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.+..+++++|||||||.. +-.+++.+.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 345789999999999954 456666654
No 194
>PHA02533 17 large terminase protein; Provisional
Probab=96.67 E-value=0.018 Score=49.33 Aligned_cols=119 Identities=11% Similarity=0.081 Sum_probs=73.6
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.+.|.|...+..+..++-.++..+-..|||.+...-++..... ..+.++++++|+++-+..+++.++.+.+..|.+.-.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 4789999998877666666788888999998766444433322 234589999999999999999888877765443110
Q ss_pred EEECCCchHHhHHHHhcCCCeEEEeecC--ccCCCCceEEEEeCCC
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVGLVNY--ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~l~~~--~~~~~~~~~lVlDEad 159 (175)
.+.... ...-.+.+|.-+.+ +... ...=.+..++++||+.
T Consensus 138 ~i~~~~---~~~I~l~NGS~I~~-lss~~~t~rG~~~~~liiDE~a 179 (534)
T PHA02533 138 GIVEWN---KGSIELENGSKIGA-YASSPDAVRGNSFAMIYIDECA 179 (534)
T ss_pred ceeecC---ccEEEeCCCCEEEE-EeCCCCccCCCCCceEEEeccc
Confidence 011110 11111234433322 2222 2222356789999984
No 195
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.0081 Score=48.25 Aligned_cols=63 Identities=22% Similarity=0.164 Sum_probs=41.3
Q ss_pred HHHhhCCCCCCcHHHHHhHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHH
Q psy1539 27 RIGESQPFREQTSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95 (175)
Q Consensus 27 ~~l~~~g~~~~t~~Q~~~i~~~~~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (175)
..+-+ |...++-|...+..+..+ .|+++++.||||||.. +-+++..+... . +++.+=-|.||-
T Consensus 150 ~dli~--~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~--e-RvItiEDtaELq 213 (355)
T COG4962 150 LDLII--FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSD--E-RVITIEDTAELQ 213 (355)
T ss_pred HHHHH--cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCc--c-cEEEEeehhhhc
Confidence 34444 567899999998877776 5999999999999953 33443333221 1 555555555543
No 196
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.62 E-value=0.0078 Score=53.41 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=52.9
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-CCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
..++|-|.+|+.. ...+++|.|+.|||||.+...=+...+... -..-++|+++-|+.-+..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999864 346799999999999987665555544322 1223689999999999998888877643
No 197
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.62 E-value=0.01 Score=52.03 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=51.3
Q ss_pred CCcHHHHHhHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 36 EQTSFQHECIPQAVLG-----MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g-----~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.|++.|..++..+.++ +..++.+.+|||||+... .++... +..+|||+|+...+.|+++.++.+..
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----CCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 6899999999887643 257799999999997643 233322 23599999999999999999988853
No 198
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.61 E-value=0.039 Score=53.17 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=45.0
Q ss_pred CCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhh--cCCCCeEEEEEecCHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLE--TTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~--~~~~~~~~lil~Pt~~L~~q~ 98 (175)
.+++-|++|+..++.+ +-++|.+..|+|||... -.++..+. ....+.+++.++||-.=+.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 6899999999999975 67899999999999653 23333332 123455788899997666553
No 199
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.034 Score=47.46 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~ 69 (175)
.|..+.+.+|||+|||....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997653
No 200
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.53 E-value=0.028 Score=47.53 Aligned_cols=134 Identities=13% Similarity=0.062 Sum_probs=75.4
Q ss_pred HHHHHhHHHHh-----cC----CcEEEEcCCCChHHHHHHHHHHHhh-hcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 39 SFQHECIPQAV-----LG----MDILCQAKSGMGKTAVFVLATLQQL-ETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 39 ~~Q~~~i~~~~-----~g----~~~ii~a~TGsGKT~~~~~~~l~~l-~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
|+|+-.+-.++ .| +.+++.-|-+.|||.....-.+-.+ .....+..+++.+++++-|..+++.++.+.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 45666655554 22 4688888999999975544333333 33345678999999999999999999999877
Q ss_pred CCCeEEEEEECCCc-hHHhHHHHhcCCCeEEEeecC--ccCCCCceEEEEeCCCCCCHHHHHHHHhhh
Q psy1539 109 MSNIKVGVFFGGLP-IQKDEEYLKTHNPQIVGLVNY--ETNLSGVVVNVMDVRSGGWWLDLEALILSK 173 (175)
Q Consensus 109 ~~~i~v~~~~g~~~-~~~~~~~l~~~~~iiv~l~~~--~~~~~~~~~lVlDEad~~f~~~v~~il~~~ 173 (175)
.|......-..-.. ....+....++ ..+..+... ..+=.+..++|+||++..-..++...|.+.
T Consensus 81 ~~~l~~~~~~~~~~~~~~~i~~~~~~-s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g 147 (477)
T PF03354_consen 81 SPELRKRKKPKIIKSNKKEIEFPKTG-SFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESG 147 (477)
T ss_pred ChhhccchhhhhhhhhceEEEEcCCC-cEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhh
Confidence 64443211000000 00000001111 122222222 233336789999999533334455555543
No 201
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.50 E-value=0.0098 Score=47.07 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhcC
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLETT 79 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~~~ 79 (175)
++|.+|||||||.+ +.+++.+++..
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 78899999999965 46777777653
No 202
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.45 E-value=0.0069 Score=52.16 Aligned_cols=121 Identities=9% Similarity=-0.014 Sum_probs=75.7
Q ss_pred CCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH-HHHHHHHhhCCCe
Q psy1539 36 EQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS-KEYERFSKYMSNI 112 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~-~~~~~~~~~~~~i 112 (175)
..+|+|.+.+..+..- +.++++.++-+|||...+..+...+...+ .-++++.||.+.+.... ..+..+.+..|.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 5689999988877764 78999999999999854443333333322 35899999999999877 4477777766554
Q ss_pred EEEEEE---CCCchHHhHHHHhcCCCeEEEeecC--ccCCCCceEEEEeCCC
Q psy1539 113 KVGVFF---GGLPIQKDEEYLKTHNPQIVGLVNY--ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 113 ~v~~~~---g~~~~~~~~~~l~~~~~iiv~l~~~--~~~~~~~~~lVlDEad 159 (175)
+-.+-- .+...+...+.+. |..+.++-.+. .+.-..++++++||.|
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~~l~s~~~r~~~~DEvD 144 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPSNLRSRPARYLLLDEVD 144 (557)
T ss_pred HHHhCchhhcccCCchhheecC-CCEEEEEeCCCCcccccCCcCEEEEechh
Confidence 421111 0111112222222 33444443333 4444579999999996
No 203
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.38 E-value=0.0073 Score=48.90 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=28.0
Q ss_pred HHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 94 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 94 (175)
.+..+.++++++|||||||. ++-+++..+... .+.+.+=.+.||
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~~---~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISAIPPQ---ERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHcccCCC---CCEEEECCCccc
Confidence 34467999999999999995 455566555321 234444444444
No 204
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38 E-value=0.039 Score=46.00 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEEEEE
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFF 118 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~ 118 (175)
|+.+++.+|||+|||.+..--+. .+.....+.++.++. |.|.-+ .++++.+.+.. ++.+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~-~~~~~~~g~~V~li~~D~~r~~a---~eqL~~~a~~~-~vp~~~~~ 285 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA-RYALLYGKKKVALITLDTYRIGA---VEQLKTYAKIM-GIPVEVVY 285 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-HHHHhcCCCeEEEEECCccHHHH---HHHHHHHHHHh-CCceEccC
Confidence 56789999999999976542222 221011233455554 333322 23455555444 55554433
No 205
>PRK05973 replicative DNA helicase; Provisional
Probab=96.37 E-value=0.016 Score=44.46 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=51.4
Q ss_pred cCCCCHHHHHHHhhCCCCC----------CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEE
Q psy1539 18 SRNRREKEDRIGESQPFRE----------QTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV 87 (175)
Q Consensus 18 ~~~l~~~l~~~l~~~g~~~----------~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (175)
..+++..+-+.-.+.||.. +||... ...-+..|.-++|.|++|+|||...+.-+.+... ++.+++|
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---~Ge~vly 97 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK---SGRTGVF 97 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEE
Confidence 4567777777777778763 455322 3334456788999999999999655444443332 3446777
Q ss_pred EecCHHHHHHHHHHHHHH
Q psy1539 88 MCHTRELAFQISKEYERF 105 (175)
Q Consensus 88 l~Pt~~L~~q~~~~~~~~ 105 (175)
++-- +=..|+.+.+..+
T Consensus 98 fSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 98 FTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEe-CCHHHHHHHHHHc
Confidence 7643 2245666666655
No 206
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.041 Score=45.47 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=41.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 129 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~ 129 (175)
+.+.+.+|||+|||.....-. ..+.. .+.++.++. |.|.-+ .++++.+.+.. ++.+..........+.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~~L~~--~GkkVglI~aDt~RiaA---vEQLk~yae~l-gipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-WQFHG--KKKTVGFITTDHSRIGT---VQQLQDYVKTI-GFEVIAVRDEAAMTRALTY 314 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHHHH--cCCcEEEEecCCcchHH---HHHHHHHhhhc-CCcEEecCCHHHHHHHHHH
Confidence 578899999999997644322 23332 233444444 334222 22344555544 6665543332233333444
Q ss_pred Hhc--CCCeEEE
Q psy1539 130 LKT--HNPQIVG 139 (175)
Q Consensus 130 l~~--~~~iiv~ 139 (175)
+.. +.++|+.
T Consensus 315 lk~~~~~DvVLI 326 (436)
T PRK11889 315 FKEEARVDYILI 326 (436)
T ss_pred HHhccCCCEEEE
Confidence 443 4566665
No 207
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.26 E-value=0.02 Score=46.15 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=22.2
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 48 AVLGMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+..+.+++++++||||||. ++-+++..+.
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~ip 185 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREIP 185 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhCC
Confidence 3467999999999999995 4556666553
No 208
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.26 E-value=0.014 Score=42.72 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=27.8
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
.+++++++.+++|+|||..+ .++...+.. .+..+++ ++..+|..++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa-~ai~~~~~~--~g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLA-VAIANEAIR--KGYSVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHH-HHHHHHHHH--TT--EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHH-HHHHHHhcc--CCcceeE-eecCceeccc
Confidence 35799999999999999654 444444443 3434555 4666676554
No 209
>PRK08181 transposase; Validated
Probab=96.25 E-value=0.024 Score=44.39 Aligned_cols=60 Identities=22% Similarity=0.171 Sum_probs=36.8
Q ss_pred CcHHHHHhHH----HHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHH
Q psy1539 37 QTSFQHECIP----QAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100 (175)
Q Consensus 37 ~t~~Q~~~i~----~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 100 (175)
+++.|..++. .+-.++++++.||+|+|||... .++...+.. .+..++ ..+..+|..++..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~--~g~~v~-f~~~~~L~~~l~~ 151 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLA-AAIGLALIE--NGWRVL-FTRTTDLVQKLQV 151 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHH-HHHHHHHHH--cCCcee-eeeHHHHHHHHHH
Confidence 4566666653 3346799999999999999533 333333332 233444 4456777776543
No 210
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.25 E-value=0.028 Score=48.36 Aligned_cols=91 Identities=18% Similarity=0.088 Sum_probs=58.7
Q ss_pred cCCCCHHHHH-HHhhCCCCCCcH----HHHHhHHHHh--cCCcEEEEcCCCChHHHHHHHHHHHhhhcC---CCCeEEEE
Q psy1539 18 SRNRREKEDR-IGESQPFREQTS----FQHECIPQAV--LGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLV 87 (175)
Q Consensus 18 ~~~l~~~l~~-~l~~~g~~~~t~----~Q~~~i~~~~--~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~li 87 (175)
+.+...+++. +|.+.--.++.. +|.+==..+. .++-++|++..|||||.+++.-+.-.++.- ..+..+++
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlv 265 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLV 265 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEE
Confidence 4555555554 465543333322 3333322333 357789999999999988876554444321 22334999
Q ss_pred EecCHHHHHHHHHHHHHHHhh
Q psy1539 88 MCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 88 l~Pt~~L~~q~~~~~~~~~~~ 108 (175)
+.|.+-+...+.+++-.++..
T Consensus 266 l~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred EcCcHHHHHHHHHhchhhccC
Confidence 999999999999999888764
No 211
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.23 E-value=0.016 Score=48.73 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=30.8
Q ss_pred cHHHHHhHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHhhhcC
Q psy1539 38 TSFQHECIPQAVLGM--DILCQAKSGMGKTAVFVLATLQQLETT 79 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~--~~ii~a~TGsGKT~~~~~~~l~~l~~~ 79 (175)
++.|...+..+++.. =+++.+|||||||.+ +..+++.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 778888887777653 367899999999965 56777777643
No 212
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.22 E-value=0.036 Score=46.53 Aligned_cols=49 Identities=27% Similarity=0.275 Sum_probs=31.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 102 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 102 (175)
..+++.|++|+|||. .+.++.+.+.....+.+++++.+ .++..+....+
T Consensus 142 npl~i~G~~G~GKTH-Ll~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTH-LLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHH-HHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 459999999999994 34566665554344556766654 56665544443
No 213
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.20 E-value=0.026 Score=47.31 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=49.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 130 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l 130 (175)
|.-+++.+++|+|||...+. ++..... .+.+++|+.- .+-..|+....+++.....+ ..+....+..+..+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq-~a~~~a~--~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~---l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQ-VAARLAA--AGGKVLYVSG-EESASQIKLRAERLGLPSDN---LYLLAETNLEAILATI 152 (446)
T ss_pred CEEEEEECCCCCCHHHHHHH-HHHHHHh--cCCeEEEEEc-cccHHHHHHHHHHcCCChhc---EEEeCCCCHHHHHHHH
Confidence 46789999999999965433 3333222 3447888874 44556776666665432212 2233444443333333
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCCC
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEad 159 (175)
.+ .+.+++|+|+..
T Consensus 153 ~~---------------~~~~lVVIDSIq 166 (446)
T PRK11823 153 EE---------------EKPDLVVIDSIQ 166 (446)
T ss_pred Hh---------------hCCCEEEEechh
Confidence 22 356788899873
No 214
>KOG0392|consensus
Probab=96.20 E-value=0.013 Score=53.77 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=76.6
Q ss_pred CcHHHHHhHHHH--hc--CCcEEEEcCCCChHHHHHHHHHHHhhhcC-----CCCeE-EEEEecCHHHHHHHHHHHHHHH
Q psy1539 37 QTSFQHECIPQA--VL--GMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVY-VLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 37 ~t~~Q~~~i~~~--~~--g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~-~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
++.+|++-+..+ ++ +-+-++|-.-|-|||+--+.-+....... +-... +||+||. .|+-.+...+.+|.
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 467899987543 33 35778999999999976554443332221 11223 8999997 57767666666654
Q ss_pred hhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE---eecC---ccCCCCceEEEEeCCC
Q psy1539 107 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG---LVNY---ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 107 ~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~---l~~~---~~~~~~~~~lVlDEad 159 (175)
|-+++...+|+...+...+.--++.+|||+ ..++ .+.=..-.|.|+||-+
T Consensus 1055 ---pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGH 1110 (1549)
T KOG0392|consen 1055 ---PFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGH 1110 (1549)
T ss_pred ---chhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcc
Confidence 557888888876555555554455788887 3333 1122356789999973
No 215
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.19 E-value=0.17 Score=44.89 Aligned_cols=136 Identities=14% Similarity=0.039 Sum_probs=77.7
Q ss_pred HhhCCCCCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 29 GESQPFREQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
+.+...+.+..-|.+.+..++++ +-+++.|.-|-|||.+.-+.+........ ...+++-+|+.+=++.+.+.+.+-.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHHhH
Confidence 44443444455555556666654 46899999999999887766643333221 4578999999999988887766555
Q ss_pred hhCCCeEEEEEECC-CchHHhHHHHhcCCCeEEEeecC-ccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 107 KYMSNIKVGVFFGG-LPIQKDEEYLKTHNPQIVGLVNY-ETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 107 ~~~~~i~v~~~~g~-~~~~~~~~~l~~~~~iiv~l~~~-~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
+.. |.+-.+.... ...... ++....|-.... ... ..-+.+|+|||...-.+=++.++.+
T Consensus 286 ~~l-g~~~~v~~d~~g~~~~~-----~~~~~~i~y~~P~~a~-~~~DllvVDEAAaIplplL~~l~~~ 346 (758)
T COG1444 286 EFL-GYKRKVAPDALGEIREV-----SGDGFRIEYVPPDDAQ-EEADLLVVDEAAAIPLPLLHKLLRR 346 (758)
T ss_pred HHh-CCccccccccccceeee-----cCCceeEEeeCcchhc-ccCCEEEEehhhcCChHHHHHHHhh
Confidence 544 4332111111 000000 011112221221 111 2278899999977777777666654
No 216
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.18 E-value=0.093 Score=40.47 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=24.8
Q ss_pred CCCcHHHHHhHHHHh----cC-CcEEEEcCCCChHHHHH
Q psy1539 35 REQTSFQHECIPQAV----LG-MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~----~g-~~~ii~a~TGsGKT~~~ 68 (175)
-.+++.+.+++..+. .+ ..+++.||+|+|||...
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 356777777776553 23 36889999999999654
No 217
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.033 Score=46.97 Aligned_cols=24 Identities=17% Similarity=-0.039 Sum_probs=17.7
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 148 SGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 148 ~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+.+.+|+||+|+.-....+.+|+
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLK 143 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLK 143 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHH
Confidence 367899999998776666666554
No 218
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.02 Score=46.72 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=18.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.|+++.++||+|||.+.-. ++..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHH
Confidence 5799999999999976433 334443
No 219
>PRK13764 ATPase; Provisional
Probab=96.15 E-value=0.013 Score=50.74 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=21.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.+.++++++|||||||. ++.+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 46889999999999995 4566666664
No 220
>PRK06921 hypothetical protein; Provisional
Probab=96.14 E-value=0.08 Score=41.34 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=30.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
.+.++++.+++|+|||.. +.+++..+... .+..++++ +..++..++...
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~-~g~~v~y~-~~~~l~~~l~~~ 164 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRK-KGVPVLYF-PFVEGFGDLKDD 164 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhh-cCceEEEE-EHHHHHHHHHHH
Confidence 367899999999999953 34555555432 14455555 455666555443
No 221
>KOG0922|consensus
Probab=96.05 E-value=0.064 Score=46.44 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=54.6
Q ss_pred HHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHH-HHHhhCCCeEEEEE--E
Q psy1539 42 HECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE-RFSKYMSNIKVGVF--F 118 (175)
Q Consensus 42 ~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~i~v~~~--~ 118 (175)
.+.+..+-+++-++|.+.||||||.= +.-.|........| +.-+--|.|-=|.-+.+... ++.... |-.|+.- +
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKSTQ-ipQyL~eaG~~~~g-~I~~TQPRRVAavslA~RVAeE~~~~l-G~~VGY~IRF 133 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKSTQ-IPQYLAEAGFASSG-KIACTQPRRVAAVSLAKRVAEEMGCQL-GEEVGYTIRF 133 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCcccc-HhHHHHhcccccCC-cEEeecCchHHHHHHHHHHHHHhCCCc-CceeeeEEEe
Confidence 34455666788999999999999952 22122221122233 24444477766655444432 232222 3333322 2
Q ss_pred CCCchHHhHHHHhcCCCeEEE----eecC---ccCCCCceEEEEeCCC
Q psy1539 119 GGLPIQKDEEYLKTHNPQIVG----LVNY---ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 119 g~~~~~~~~~~l~~~~~iiv~----l~~~---~~~~~~~~~lVlDEad 159 (175)
-+.. .. ...+..- |++. .-.+++-..+|+|||+
T Consensus 134 ed~t--s~------~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAH 173 (674)
T KOG0922|consen 134 EDST--SK------DTRIKYMTDGMLLREILKDPLLSKYSVIILDEAH 173 (674)
T ss_pred cccC--CC------ceeEEEecchHHHHHHhcCCccccccEEEEechh
Confidence 2221 00 0112221 2332 3457899999999993
No 222
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.03 E-value=0.024 Score=46.35 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=22.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEE
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 88 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (175)
.++++.||+|+|||... --++..+.....+...+++
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEEE
Confidence 68999999999999653 3444444332223445554
No 223
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.03 E-value=0.12 Score=41.23 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
++++++.|++|+|||... .++.+.+.. .+..+.++ ..-+++.++
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~~--~g~~v~~~-~~~~l~~~l 199 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELAK--KGVSSTLL-HFPEFIREL 199 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH--cCCCEEEE-EHHHHHHHH
Confidence 468999999999999543 344444442 33344444 333455443
No 224
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.02 E-value=0.1 Score=38.86 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=33.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEEEEECC
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGG 120 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~ 120 (175)
+++.+|||+|||.+.. -+..++... +.++.+++ ..|.=+ .++++.+.+.+ ++.+......
T Consensus 4 i~lvGptGvGKTTt~a-KLAa~~~~~--~~~v~lis~D~~R~ga---~eQL~~~a~~l-~vp~~~~~~~ 65 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIA-KLAARLKLK--GKKVALISADTYRIGA---VEQLKTYAEIL-GVPFYVARTE 65 (196)
T ss_dssp EEEEESTTSSHHHHHH-HHHHHHHHT--T--EEEEEESTSSTHH---HHHHHHHHHHH-TEEEEESSTT
T ss_pred EEEECCCCCchHhHHH-HHHHHHhhc--cccceeecCCCCCccH---HHHHHHHHHHh-ccccchhhcc
Confidence 6789999999997643 222233222 33444444 345444 34566666666 7776554433
No 225
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.093 Score=44.55 Aligned_cols=102 Identities=17% Similarity=0.041 Sum_probs=50.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCc-hHHhHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP-IQKDEEYL 130 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~-~~~~~~~l 130 (175)
+.++++||.|+|||.++.+-. ..+.- ..+ |+.+-|.+ -..|+.+.... ...+..+.+... .-++.+.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA-k~LnC-~~~-------~~~~pCg~-C~~C~~i~~~~-~~Dv~eidaas~~~vddIR~I 104 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS-LCLNC-SNG-------PTSDPCGT-CHNCISIKNSN-HPDVIEIDAASNTSVDDIKVI 104 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH-HHHcC-cCC-------CCCCCccc-cHHHHHHhccC-CCCEEEEecccCCCHHHHHHH
Confidence 579999999999997654322 22211 111 22222222 12244443332 334444444321 12334433
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
... ....-...+.+.+|+||+|+.-....+.+++
T Consensus 105 ie~-------~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK 138 (491)
T PRK14964 105 LEN-------SCYLPISSKFKVYIIDEVHMLSNSAFNALLK 138 (491)
T ss_pred HHH-------HHhccccCCceEEEEeChHhCCHHHHHHHHH
Confidence 321 1111124688999999998766555555543
No 226
>PRK10436 hypothetical protein; Provisional
Probab=95.94 E-value=0.02 Score=48.22 Aligned_cols=45 Identities=31% Similarity=0.278 Sum_probs=29.8
Q ss_pred HhhCCCCCCcHHHHHhHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 29 GESQPFREQTSFQHECIPQAVL--GMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~~--g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
|.++|+ .+.|.+.+..+.. +--+++++|||||||... .+++..+.
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 444553 5556666665543 346889999999999754 45666654
No 227
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.92 E-value=0.048 Score=44.69 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 130 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l 130 (175)
|.-+++.+++|+|||...+. ++..+.. .+.+++|+.-. +-..|+....+++.-...++ .+....+..+-.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq-~a~~~a~--~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~~l---~l~~e~~le~I~~~i 154 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ-VAARLAK--RGGKVLYVSGE-ESPEQIKLRADRLGISTENL---YLLAETNLEDILASI 154 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH-HHHHHHh--cCCeEEEEECC-cCHHHHHHHHHHcCCCcccE---EEEccCcHHHHHHHH
Confidence 46789999999999965443 3333322 23468887654 33456666565554322122 233344433333333
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCC
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEa 158 (175)
.. .+.+++|+|++
T Consensus 155 ~~---------------~~~~lVVIDSI 167 (372)
T cd01121 155 EE---------------LKPDLVIIDSI 167 (372)
T ss_pred Hh---------------cCCcEEEEcch
Confidence 22 36678899987
No 228
>KOG1133|consensus
Probab=95.91 E-value=0.013 Score=50.92 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=34.8
Q ss_pred CCcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 36 EQTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+|+.+|.+.+..++ +|+=-+..+|||+|||+..+.+.+.-+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 58999999887655 589889999999999999888887655
No 229
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.88 E-value=0.028 Score=45.83 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=20.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.+..+++++|||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 5678999999999999653 55555553
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.86 E-value=0.059 Score=43.41 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=30.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 100 (175)
.+.++++.|+||+|||.. +.++...+.. .+..+++ .+..+|..++..
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~--~g~~V~y-~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLD--RGKSVIY-RTADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHH--CCCeEEE-EEHHHHHHHHHH
Confidence 358999999999999963 3455555543 3445555 455667665543
No 231
>KOG0388|consensus
Probab=95.86 E-value=0.026 Score=49.52 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=73.4
Q ss_pred CcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCC-CeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 37 QTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTDS-NVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 37 ~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
+-++|...+..+. +|-|-++.-.-|-|||.- .++++.++....+ ..--|+++|...|- .+.+.+.+..|.
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~nIwGPFLVVtpaStL~----NWaqEisrFlP~ 642 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHNIWGPFLVVTPASTLH----NWAQEISRFLPS 642 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhccCCCceEEeehHHHHh----HHHHHHHHhCcc
Confidence 3467777765543 588999999999999965 4566666644322 12368888876663 445566666689
Q ss_pred eEEEEEECCCchHHhHHHH---------hcCCCeEEE----eecCccCCC--CceEEEEeCC
Q psy1539 112 IKVGVFFGGLPIQKDEEYL---------KTHNPQIVG----LVNYETNLS--GVVVNVMDVR 158 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l---------~~~~~iiv~----l~~~~~~~~--~~~~lVlDEa 158 (175)
+++.-+-|+.+....++.. ..+.+++|+ ++.....|+ +-.+.|+|||
T Consensus 643 ~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEA 704 (1185)
T KOG0388|consen 643 FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEA 704 (1185)
T ss_pred ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHH
Confidence 9999888887644444431 123355555 222222333 3468899998
No 232
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.86 E-value=0.017 Score=42.51 Aligned_cols=45 Identities=27% Similarity=0.226 Sum_probs=31.1
Q ss_pred HhhCCCCCCcHHHHHhHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 29 GESQPFREQTSFQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~-~g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
|.+.| ..++-|...+.... .|.++++.+|||||||... -.++..+
T Consensus 4 l~~~g--~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 4 LIAQG--TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred HHHcC--CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 44444 45777777776544 6899999999999999643 3344443
No 233
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.85 E-value=0.11 Score=44.97 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=55.7
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEE
Q psy1539 80 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVN 153 (175)
Q Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~l 153 (175)
..+.++||.|+|++.++++.+.+.+. ++.+..++|+.+..+.. +.++++ ..++|+ +....+++.+++++
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~V 329 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYV 329 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEE
Confidence 34568999999999999988777543 77899999998755443 344444 467777 66668899999999
Q ss_pred EEeCC
Q psy1539 154 VMDVR 158 (175)
Q Consensus 154 VlDEa 158 (175)
|.-+.
T Consensus 330 Inyd~ 334 (572)
T PRK04537 330 YNYDL 334 (572)
T ss_pred EEcCC
Confidence 88665
No 234
>PRK12377 putative replication protein; Provisional
Probab=95.84 E-value=0.033 Score=43.09 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=30.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
.++++.+|+|+|||.. +.++.+.+.. .+..+ +.++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThL-a~AIa~~l~~--~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHL-AAAIGNRLLA--KGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH--cCCCe-EEEEHHHHHHHHHHH
Confidence 6899999999999953 3455555543 23334 445666777766543
No 235
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.84 E-value=0.013 Score=51.99 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=39.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
-|+=|...||+|||.+|+--+.. +.+.-+-.+-||+|||.+.-.-++...+...
T Consensus 75 lNiDI~METGTGKTy~Ylrtmfe-Lhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ 128 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFE-LHKKYGLFKFIIVVPSLAIKEGVFLTSKETT 128 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHH-HHHHhCceeEEEEeccHHHHhhhHHHHHHHH
Confidence 57889999999999999765543 3333456789999999887666555544443
No 236
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.83 E-value=0.14 Score=36.88 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=22.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEE
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV 87 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (175)
+.|..++|.|||.+.+--.+..+. .+.++++
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~---~g~~v~~ 35 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALG---HGYRVGV 35 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEE
Confidence 567788899999887666666554 3446666
No 237
>KOG0924|consensus
Probab=95.82 E-value=0.066 Score=46.86 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=39.1
Q ss_pred cHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHH
Q psy1539 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYE 103 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~ 103 (175)
...+.+.+..+..+.-++|.+.||||||.-. .+.++....+...+|-| |.|.-|.-+.+.+.
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl----~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQL----AQYLYEDGYADNGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhh----HHHHHhcccccCCeeeecCchHHHHHHHHHHHH
Confidence 4455666666667888999999999999743 33343332222234444 88877776655543
No 238
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.81 E-value=0.17 Score=35.29 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=23.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHH
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (175)
+++.+++|+|||.... .++..... .+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~-~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLAL-QLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHH-HHHHHHHh--cCCEEEEEECCcchH
Confidence 5789999999996443 23333222 344677776554443
No 239
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.79 E-value=0.029 Score=47.53 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=30.4
Q ss_pred HhhCCCCCCcHHHHHhHHHHhcC-Cc-EEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 29 GESQPFREQTSFQHECIPQAVLG-MD-ILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~~g-~~-~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
|.++|| ++-|.+.+..+... +. +++++|||||||... ..++..+.
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 455554 56677777666543 43 689999999999654 44566654
No 240
>KOG0331|consensus
Probab=95.73 E-value=0.093 Score=44.59 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=60.7
Q ss_pred HHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHh---c-CCCeEEE--eecC
Q psy1539 70 LATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---T-HNPQIVG--LVNY 143 (175)
Q Consensus 70 ~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~---~-~~~iiv~--l~~~ 143 (175)
.+++.... ...+.++||.|-|+.-|.++.+.++.. ++.+..++|+.+..+....|+ + .++++|+ +.-+
T Consensus 330 ~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaR 403 (519)
T KOG0331|consen 330 GKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAAR 403 (519)
T ss_pred HHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccc
Confidence 34444444 345569999999999998876666543 578899999998665554443 3 4688998 6677
Q ss_pred ccCCCCceEEEEeCC
Q psy1539 144 ETNLSGVVVNVMDVR 158 (175)
Q Consensus 144 ~~~~~~~~~lVlDEa 158 (175)
.+++.++++||-=+.
T Consensus 404 GLDi~dV~lVInydf 418 (519)
T KOG0331|consen 404 GLDVPDVDLVINYDF 418 (519)
T ss_pred cCCCccccEEEeCCC
Confidence 899999999997555
No 241
>KOG0925|consensus
Probab=95.70 E-value=0.029 Score=47.16 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=56.9
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.....|...+.++.-.+.+++..=-.-+..+.+.+..+.++.-+++.+.||||||.---.=.+....... ..+..--|
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQp 99 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQP 99 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCc
Confidence 4466788899999888888776332335555555666777899999999999999531111112211111 23455558
Q ss_pred CHHHHHHHHHHH
Q psy1539 91 TRELAFQISKEY 102 (175)
Q Consensus 91 t~~L~~q~~~~~ 102 (175)
.|--+.++....
T Consensus 100 rrvaamsva~RV 111 (699)
T KOG0925|consen 100 RRVAAMSVAQRV 111 (699)
T ss_pred hHHHHHHHHHHH
Confidence 887777755443
No 242
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.67 E-value=0.016 Score=45.12 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=29.7
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (175)
..+.+++++|+||||||.. +-.++..+... ..+++.+=.+.|+-
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~--~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE--DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT--TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc--ccceEEecccccee
Confidence 4578999999999999954 46666666543 23666666665553
No 243
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.67 E-value=0.07 Score=42.00 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~ 69 (175)
++.+.+.+|||+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578899999999997543
No 244
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.56 E-value=0.15 Score=44.72 Aligned_cols=116 Identities=10% Similarity=-0.030 Sum_probs=72.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhC-CCeEEEEEECCCchHHhHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM-SNIKVGVFFGGLPIQKDEE 128 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~i~v~~~~g~~~~~~~~~ 128 (175)
+.+-.++..|--.|||+... +++..+.....+.++++.+|.+.-++.+++.+..+.+.. ++-.+....| ... .-
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i 327 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SF 327 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EE
Confidence 34567788899999998665 666665554467899999999999999999988876642 2212222222 111 00
Q ss_pred HHhcCC--CeEEEeec--CccCCCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 129 YLKTHN--PQIVGLVN--YETNLSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 129 ~l~~~~--~iiv~l~~--~~~~~~~~~~lVlDEad~~f~~~v~~il 170 (175)
.+.+|. -+..+-.+ +...=.+++++|+|||...-.+.+..+|
T Consensus 328 ~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~al~~il 373 (738)
T PHA03368 328 SFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTIM 373 (738)
T ss_pred EecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHHHHHHHH
Confidence 122232 22222111 1234457999999999766556666665
No 245
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.55 E-value=0.044 Score=44.34 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=33.4
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~-~g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
.-++.+.+.|+ +++.+.+.+..+. .+.+++++++||||||.. +-.++..+
T Consensus 152 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i 202 (340)
T TIGR03819 152 FTLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV 202 (340)
T ss_pred CCHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC
Confidence 34555666665 4566666665554 568999999999999953 34444444
No 246
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.49 E-value=0.033 Score=42.56 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=35.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.|..+++.+++|+|||....--+...+. ++-++++++ +.+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 3688999999999999755444444443 344677777 4455666666666553
No 247
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.47 E-value=0.045 Score=42.69 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=30.8
Q ss_pred HHhhCCCCCCcHHHHHhHHHHhc-C-CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 28 IGESQPFREQTSFQHECIPQAVL-G-MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 28 ~l~~~g~~~~t~~Q~~~i~~~~~-g-~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.+.+.|+ .+-|.+.+..+.. . ..+++.++||||||.. +..++..+.
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~ 105 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELN 105 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhC
Confidence 3556664 5667777765553 3 4689999999999964 455555553
No 248
>PRK14974 cell division protein FtsY; Provisional
Probab=95.45 E-value=0.23 Score=40.14 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=30.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC--HH-HHHHHHHHHHHHHhhCCCeEEE
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT--RE-LAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt--~~-L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.-+++.+++|+|||.+..--+ ..+.. .+.+++++... |. -..| ++.+.... ++.+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--~g~~V~li~~Dt~R~~a~eq----L~~~a~~l-gv~v~ 199 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--NGFSVVIAAGDTFRAGAIEQ----LEEHAERL-GVKVI 199 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--cCCeEEEecCCcCcHHHHHH----HHHHHHHc-CCcee
Confidence 457889999999997543222 23332 33355555532 33 3334 44444444 55544
No 249
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.45 E-value=0.042 Score=47.50 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=31.1
Q ss_pred HhhCCCCCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 29 GESQPFREQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+.++|| .+.|.+.+..+... -.+++++|||||||.+. ..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 455665 56677777665543 45789999999999764 56666664
No 250
>KOG4439|consensus
Probab=95.40 E-value=0.11 Score=45.64 Aligned_cols=101 Identities=18% Similarity=0.212 Sum_probs=70.4
Q ss_pred CCcHHHHHhHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHhh-----hcC--CCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVL-----GMDILCQAKSGMGKTAVFVLATLQQL-----ETT--DSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~-----g~~~ii~a~TGsGKT~~~~~~~l~~l-----~~~--~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
.+-|+|..++..+.- +..-++...-|-|||+..+--+++.- ..+ ......|||||- .|..|+...+.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 356799998866552 36778888999999987554444321 111 112258999997 47789998888
Q ss_pred HHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE
Q psy1539 104 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139 (175)
Q Consensus 104 ~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~ 139 (175)
+-.... -++|.+++|........+.+++ .+++|.
T Consensus 404 ~rl~~n-~LsV~~~HG~n~r~i~~~~L~~-YDvViT 437 (901)
T KOG4439|consen 404 RRLEQN-ALSVYLYHGPNKREISAKELRK-YDVVIT 437 (901)
T ss_pred HHHhhc-ceEEEEecCCccccCCHHHHhh-cceEEE
Confidence 776665 7888888888755556666765 588887
No 251
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.40 E-value=0.19 Score=46.00 Aligned_cols=77 Identities=8% Similarity=0.132 Sum_probs=59.8
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.+++|++|+++-+..+.+.++++ .|+.++..++|+.+..+..+ .+.+| .+++|+ +....++++++.++|
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~---~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI 735 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLREL---VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII 735 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHh---CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE
Confidence 3458999999998888877777655 35789999999987554433 34443 578888 777899999999999
Q ss_pred EeCCCC
Q psy1539 155 MDVRSG 160 (175)
Q Consensus 155 lDEad~ 160 (175)
++.++.
T Consensus 736 i~~a~~ 741 (926)
T TIGR00580 736 IERADK 741 (926)
T ss_pred EecCCC
Confidence 999964
No 252
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.35 E-value=0.077 Score=46.12 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=28.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
..+++.+++|+|||. .+.++.+.+.....+.+++++ +..+++.+.
T Consensus 315 NpL~LyG~sGsGKTH-LL~AIa~~a~~~~~g~~V~Yi-taeef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTH-LLHAIGHYARRLYPGTRVRYV-SSEEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHH-HHHHHHHHHHHhCCCCeEEEe-eHHHHHHHH
Confidence 349999999999994 345556655443334466665 445555543
No 253
>KOG0989|consensus
Probab=95.32 E-value=0.033 Score=44.23 Aligned_cols=33 Identities=18% Similarity=0.048 Sum_probs=22.7
Q ss_pred HHHHhHHHHhc------CCcEEEEcCCCChHHHHHHHHH
Q psy1539 40 FQHECIPQAVL------GMDILCQAKSGMGKTAVFVLAT 72 (175)
Q Consensus 40 ~Q~~~i~~~~~------g~~~ii~a~TGsGKT~~~~~~~ 72 (175)
.|..+...+.+ +.+.+..+|+|+|||-+..+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafa 78 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFA 78 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHH
Confidence 45555544332 3689999999999997765443
No 254
>KOG1132|consensus
Probab=95.26 E-value=0.013 Score=52.07 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=32.2
Q ss_pred CCcHHHHHhHHHHhc----CCcEEEEcCCCChHHHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVL----GMDILCQAKSGMGKTAVFVLATLQ 74 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~----g~~~ii~a~TGsGKT~~~~~~~l~ 74 (175)
.|++.|...+..++. ..+.++.+|||+|||++.+...+.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LA 63 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLA 63 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHH
Confidence 589999988876664 578999999999999998866654
No 255
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.24 E-value=0.049 Score=39.54 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=30.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
+++.+|+|+|||...+--+...+. ++.++++++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999654433333332 3446777754 45556666666554
No 256
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.16 Score=43.42 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=17.3
Q ss_pred CCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 147 LSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 147 ~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
+.+.+++|+||+|..-....+.++.
T Consensus 114 ~~~~kVVIIDEad~ls~~a~naLLk 138 (504)
T PRK14963 114 RGGRKVYILDEAHMMSKSAFNALLK 138 (504)
T ss_pred cCCCeEEEEECccccCHHHHHHHHH
Confidence 3578899999998655555555543
No 257
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.18 E-value=0.089 Score=48.19 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=61.1
Q ss_pred cHHHHHhHHHHhc--------CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhC
Q psy1539 38 TSFQHECIPQAVL--------GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 109 (175)
Q Consensus 38 t~~Q~~~i~~~~~--------g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (175)
..+|-.|+..+.. |--++-.|.||+|||++=. =++..+.....+.+..|-.-.|.|-.|..+.+++-....
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 5588888876653 3456778999999997632 223334444667788888899999999999998876554
Q ss_pred CCeEEEEEECCCch
Q psy1539 110 SNIKVGVFFGGLPI 123 (175)
Q Consensus 110 ~~i~v~~~~g~~~~ 123 (175)
+-..++++|+...
T Consensus 489 -~ddLAVlIGs~Av 501 (1110)
T TIGR02562 489 -DDDLAVLIGGTAV 501 (1110)
T ss_pred -ccceEEEECHHHH
Confidence 5677888887543
No 258
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.17 E-value=0.05 Score=41.07 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=32.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
.|..+++.+++|+|||...+--+.+.+... +-++++++- .+-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 458899999999999966544444444430 336777763 34445656665554
No 259
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.17 E-value=0.035 Score=37.44 Aligned_cols=40 Identities=25% Similarity=0.185 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
+..+++.+|+|+|||... ..++..+.... ..++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~~~~--~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELGPPG--GGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccCCCC--CCEEEECCEEc
Confidence 567899999999999654 33333333211 24666666543
No 260
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.15 E-value=0.11 Score=41.49 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=37.5
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhH-HHHhcCCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECI-PQAVLGMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i-~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
..+.++..++++.-+. +.| .+++.|..-+ -.+..+++++++++||||||. ++.+++..+
T Consensus 108 ~IRk~~~~~~t~~~l~---~~g--t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 108 TIRKFSDEPITPEDLI---EYG--TISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred EEEcCCCCCCCHHHHh---hcC--CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 3444555555554433 333 4566666554 455578999999999999994 456665554
No 261
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.13 E-value=1.6 Score=38.29 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=54.3
Q ss_pred CCeEEEEEecCHHHH-----HHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhc-CCCeEEE--eecCccCCCC
Q psy1539 81 SNVYVLVMCHTRELA-----FQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKT-HNPQIVG--LVNYETNLSG 149 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~-----~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~-~~~iiv~--l~~~~~~~~~ 149 (175)
++.++++++|+.+-. ....+.++.+.+.+++.++..++|+.+..+.. +.+++ ..+++|+ +....+++.+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 456899999986421 12223333444444688999999998755443 34444 3578888 7777999999
Q ss_pred ceEEEEeCCCC
Q psy1539 150 VVVNVMDVRSG 160 (175)
Q Consensus 150 ~~~lVlDEad~ 160 (175)
++++|+..++.
T Consensus 527 v~~VIi~~~~r 537 (630)
T TIGR00643 527 ATVMVIEDAER 537 (630)
T ss_pred CcEEEEeCCCc
Confidence 99999988864
No 262
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=95.12 E-value=0.36 Score=40.12 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=57.4
Q ss_pred HHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCcc
Q psy1539 72 TLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYET 145 (175)
Q Consensus 72 ~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~ 145 (175)
++..+.......++||.|++++-+..+.+.++. . ++.+..++|+.+..+.. +.+++| ..++|+ +....+
T Consensus 235 ~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~-~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~Gi 309 (434)
T PRK11192 235 LLCHLLKQPEVTRSIVFVRTRERVHELAGWLRK----A-GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGI 309 (434)
T ss_pred HHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHh----C-CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCc
Confidence 333443333456899999999999988877764 2 78899999998755443 344444 467777 666688
Q ss_pred CCCCceEEEEeCC
Q psy1539 146 NLSGVVVNVMDVR 158 (175)
Q Consensus 146 ~~~~~~~lVlDEa 158 (175)
++++++++|.=+.
T Consensus 310 Dip~v~~VI~~d~ 322 (434)
T PRK11192 310 DIDDVSHVINFDM 322 (434)
T ss_pred cCCCCCEEEEECC
Confidence 8899998885444
No 263
>PLN03025 replication factor C subunit; Provisional
Probab=95.10 E-value=0.42 Score=38.21 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=17.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
.+++++||+|+|||... ..+...+
T Consensus 35 ~~lll~Gp~G~GKTtla-~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI-LALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999544 3334443
No 264
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.07 E-value=0.66 Score=36.39 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~ 70 (175)
..+.+.+++|+|||..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 6789999999999986654
No 265
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.07 E-value=0.23 Score=36.33 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
..+++.+|+|+|||...
T Consensus 15 ~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLA 31 (188)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999543
No 266
>PHA02535 P terminase ATPase subunit; Provisional
Probab=95.05 E-value=0.12 Score=44.58 Aligned_cols=89 Identities=8% Similarity=0.038 Sum_probs=63.3
Q ss_pred cCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 18 SRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 18 ~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
.-.++++..+.|.+.-...+.++|+..+..-...+.-++.-.-=.|||..|..-++..... .|...++++|+++.+.+
T Consensus 120 kn~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~--~G~nqiflSas~~QA~~ 197 (581)
T PHA02535 120 KNDISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL--TGRNQIFLSASKAQAHV 197 (581)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh--cCCceEEECCCHHHHHH
Confidence 3446777777777764568899999988553234555555556689999988776665554 23357899999999998
Q ss_pred HHHHHHHHHhh
Q psy1539 98 ISKEYERFSKY 108 (175)
Q Consensus 98 ~~~~~~~~~~~ 108 (175)
..+.+..+.+.
T Consensus 198 f~~yi~~~a~~ 208 (581)
T PHA02535 198 FKQYIIAFARE 208 (581)
T ss_pred HHHHHHHHHHh
Confidence 77777777554
No 267
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.16 Score=41.48 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q psy1539 53 DILCQAKSGMGKTAVFV 69 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~ 69 (175)
.+++.||.|+|||....
T Consensus 40 ~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 40 AWLLSGTRGVGKTTIAR 56 (363)
T ss_pred EEEEecCCCCCHHHHHH
Confidence 46899999999996543
No 268
>KOG0344|consensus
Probab=95.02 E-value=0.88 Score=39.10 Aligned_cols=94 Identities=21% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchH---HhHHHHhcC-CC
Q psy1539 60 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ---KDEEYLKTH-NP 135 (175)
Q Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~---~~~~~l~~~-~~ 135 (175)
.+.||+..-++++.+.+... -.|-++|.+-+.+-|.|++..+. .++++.+.+++|+.+.. +..+.++.| ..
T Consensus 366 vF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred eeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 35666666667776666543 34578999999999999888887 23589999999996643 334456555 46
Q ss_pred eEEE--eecCccCCCCceEEEEeCC
Q psy1539 136 QIVG--LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 136 iiv~--l~~~~~~~~~~~~lVlDEa 158 (175)
++|+ ++.+.++|.++.++|.++.
T Consensus 441 vLicTdll~RGiDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 441 VLICTDLLARGIDFKGVNLVINYDF 465 (593)
T ss_pred EEEehhhhhccccccCcceEEecCC
Confidence 6777 7778899999999999988
No 269
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.01 E-value=0.24 Score=42.33 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=53.6
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
...++||.+.|+..+..+...++.. |+++..++|+.+..+..+ .+++ ...++|+ +..+.++++++.++|
T Consensus 272 ~~~~~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi 346 (513)
T COG0513 272 DEGRVIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI 346 (513)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE
Confidence 3447999999999998866555544 789999999988655444 3333 4578888 666788888888886
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
-=+.
T Consensus 347 nyD~ 350 (513)
T COG0513 347 NYDL 350 (513)
T ss_pred EccC
Confidence 5443
No 270
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.99 E-value=0.26 Score=41.34 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=31.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec-C-HHHHHHHHHHHHHHHhhCCCeEE
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH-T-RELAFQISKEYERFSKYMSNIKV 114 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P-t-~~L~~q~~~~~~~~~~~~~~i~v 114 (175)
..+++++++|+|||.+..--+ ..+.. .+.+++++.. + |.-+ .++++.+.... ++.+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA-~~L~~--~g~kV~lV~~D~~R~aa---~eQL~~la~~~-gvp~ 153 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA-RYFKK--KGLKVGLVAADTYRPAA---YDQLKQLAEKI-GVPF 153 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHH--cCCeEEEecCCCCCHHH---HHHHHHHHHHc-CCcE
Confidence 357899999999997654322 33332 2335555542 2 3322 34455555554 5554
No 271
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.97 E-value=0.49 Score=37.72 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=25.4
Q ss_pred EEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 55 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 55 ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
++.++.|+|||.....-++..+.....+.++++...+..+...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 43 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDI 43 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHH
Confidence 4678999999998887777776654444455555334555544
No 272
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.14 Score=43.77 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=17.5
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 148 SGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 148 ~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+.+.+|+||+|+.-....+.+++
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk 141 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLK 141 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHH
Confidence 467899999998766666555543
No 273
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.93 E-value=0.021 Score=46.83 Aligned_cols=47 Identities=23% Similarity=0.152 Sum_probs=34.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHH
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 104 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (175)
++++.||||||||.++++|-+-.. ...++|.=|.-|+........++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999999988876542 12577778888888765554443
No 274
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.91 E-value=0.0083 Score=43.98 Aligned_cols=110 Identities=15% Similarity=0.019 Sum_probs=43.8
Q ss_pred EEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhc-C
Q psy1539 55 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT-H 133 (175)
Q Consensus 55 ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~-~ 133 (175)
++.|+-|-|||.+.-+.+...+.. ...++++-+|+.+=++.+++.+..-.+.. +.+... .........+.. +
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~----~~~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--GKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEK----KKRIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-------------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--cCceEEEecCCHHHHHHHHHHHHhhcccc-cccccc----cccccccccccccc
Confidence 578999999997766555443332 23578899999988887777655444332 222200 000000000000 0
Q ss_pred CCeEEEeecCccC-CCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 134 NPQIVGLVNYETN-LSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 134 ~~iiv~l~~~~~~-~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
..+-..-.+.... -...+++|+|||...-.+-++.++.
T Consensus 74 ~~i~f~~Pd~l~~~~~~~DlliVDEAAaIp~p~L~~ll~ 112 (177)
T PF05127_consen 74 QRIEFVAPDELLAEKPQADLLIVDEAAAIPLPLLKQLLR 112 (177)
T ss_dssp CC--B--HHHHCCT----SCEEECTGGGS-HHHHHHHHC
T ss_pred ceEEEECCHHHHhCcCCCCEEEEechhcCCHHHHHHHHh
Confidence 0110000111111 1245899999998777777777763
No 275
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=0.18 Score=40.67 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=25.5
Q ss_pred CcHHHHHhHHHHhcC----CcEEEEcCCCChHHHHH
Q psy1539 37 QTSFQHECIPQAVLG----MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g----~~~ii~a~TGsGKT~~~ 68 (175)
.+|+|...|..+... +-+++++|.|.|||..+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 478899999877743 46899999999999544
No 276
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.90 E-value=0.44 Score=39.84 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=42.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCch-H---Hh
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI-Q---KD 126 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~-~---~~ 126 (175)
-+.+++++|+|||.+..--+ ..+.. .+.++++++ |.|.-+. ++++.+.+.. ++.+.....+.+. . +.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA-~~l~~--~G~kV~lV~~D~~R~aA~---eQLk~~a~~~-~vp~~~~~~~~dp~~i~~~~ 174 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLA-YYYQR--KGFKPCLVCADTFRAGAF---DQLKQNATKA-RIPFYGSYTESDPVKIASEG 174 (429)
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHH--CCCCEEEEcCcccchhHH---HHHHHHhhcc-CCeEEeecCCCCHHHHHHHH
Confidence 47899999999996543211 22222 234566555 3454443 3455555554 6665544443332 1 23
Q ss_pred HHHHh-cCCCeEEE
Q psy1539 127 EEYLK-THNPQIVG 139 (175)
Q Consensus 127 ~~~l~-~~~~iiv~ 139 (175)
.+.++ +++++|+.
T Consensus 175 l~~~~~~~~DvViI 188 (429)
T TIGR01425 175 VEKFKKENFDIIIV 188 (429)
T ss_pred HHHHHhCCCCEEEE
Confidence 33333 36788776
No 277
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.85 E-value=0.35 Score=39.92 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
++.+.+.+|+|+|||....--.. .+.. .+.++.++. |.|.=+ .++++.+.+.. ++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~-~l~~--~g~~V~lItaDtyR~gA---veQLk~yae~l-gvpv~ 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW-QLLK--QNRTVGFITTDTFRSGA---VEQFQGYADKL-DVELI 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH--cCCeEEEEeCCccCccH---HHHHHHHhhcC-CCCEE
Confidence 56789999999999976543222 2222 233454444 334322 22455555554 55443
No 278
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.85 E-value=0.055 Score=40.24 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=17.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+++++|||||||... ..++..+.
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhh
Confidence 688999999999653 44555554
No 279
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.83 E-value=0.4 Score=40.45 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=55.2
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+..+||.|+|+.-+.++.+.+++. ++.+..++|+.+..+..+ .+.+ ..+++|+ .....+++++++++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI 299 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI 299 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE
Confidence 4456799999999999988777643 788999999987654433 3333 4577887 555689999999999
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-..
T Consensus 300 ~~~~ 303 (470)
T TIGR00614 300 HYSL 303 (470)
T ss_pred EeCC
Confidence 8776
No 280
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.82 E-value=0.24 Score=41.05 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=53.8
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
...++||.|+++.-|..+.+.+... +.++..++|+.+.++..+ .+++| .+++|+ +....+++++++++|
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI 328 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVF 328 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEE
Confidence 3458999999999998877766532 788999999987554433 34443 577787 666688999999888
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-+.
T Consensus 329 ~~d~ 332 (423)
T PRK04837 329 NYDL 332 (423)
T ss_pred EeCC
Confidence 6655
No 281
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.82 E-value=2.3 Score=37.79 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=54.8
Q ss_pred CCeEEEEEecCHHHH-----HHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCC
Q psy1539 81 SNVYVLVMCHTRELA-----FQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSG 149 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~-----~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~ 149 (175)
++.+++++||+.+-. ....+..+.+.+.+++.++..++|+.+..+.. +.+++| .+++|+ +....+++++
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~ 549 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPN 549 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCC
Confidence 456899999975421 12233344444445568899999998755443 344554 478888 7777999999
Q ss_pred ceEEEEeCCCC
Q psy1539 150 VVVNVMDVRSG 160 (175)
Q Consensus 150 ~~~lVlDEad~ 160 (175)
++++|+..++.
T Consensus 550 v~~VIi~~~~r 560 (681)
T PRK10917 550 ATVMVIENAER 560 (681)
T ss_pred CcEEEEeCCCC
Confidence 99999999864
No 282
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.79 E-value=0.59 Score=33.56 Aligned_cols=102 Identities=15% Similarity=0.036 Sum_probs=47.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH-hhCCCeEEEEEECC--CchHHhHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS-KYMSNIKVGVFFGG--LPIQKDEE 128 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~i~v~~~~g~--~~~~~~~~ 128 (175)
+.+++.+|.|+||+... ..++..+.-...... -+....-+ +.+. ..+|++....-.+. .-..++.+
T Consensus 20 ha~L~~G~~g~gk~~~a-~~~a~~ll~~~~~~~---~c~~c~~c-------~~~~~~~~~d~~~~~~~~~~~~i~i~~ir 88 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLA-LAFARALLCSNPNED---PCGECRSC-------RRIEEGNHPDFIIIKPDKKKKSIKIDQIR 88 (162)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHHC-TT-CTT-----SSSHHH-------HHHHTT-CTTEEEEETTTSSSSBSHHHHH
T ss_pred eeEEEECCCCCCHHHHH-HHHHHHHcCCCCCCC---CCCCCHHH-------HHHHhccCcceEEEecccccchhhHHHHH
Confidence 46899999999998543 344444432211111 22222222 2222 22345554421111 11234444
Q ss_pred HHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 129 YLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 129 ~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+.+. ....-.-...+.+|+||||..-.+--..+|+
T Consensus 89 ~i~~~-------~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK 124 (162)
T PF13177_consen 89 EIIEF-------LSLSPSEGKYKVIIIDEADKLTEEAQNALLK 124 (162)
T ss_dssp HHHHH-------CTSS-TTSSSEEEEEETGGGS-HHHHHHHHH
T ss_pred HHHHH-------HHHHHhcCCceEEEeehHhhhhHHHHHHHHH
Confidence 44331 1112222578899999997655555444443
No 283
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.76 E-value=0.22 Score=36.95 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=26.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
.|.-+.+.+|+|+|||...+..+.+... .+.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECC
Confidence 3577899999999999765544433332 24467777664
No 284
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.74 E-value=0.28 Score=43.32 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~ 70 (175)
+.++++||.|+|||....+
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4689999999999976543
No 285
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.72 E-value=0.047 Score=45.85 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=36.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
.++++.||||||||..+++|.+-.. .+ -++|.=|--||.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 4699999999999999999987431 22 4677778888876655544443
No 286
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.021 Score=45.67 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
..|+++.+|||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 368999999999999743
No 287
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.68 E-value=0.19 Score=43.73 Aligned_cols=107 Identities=14% Similarity=0.015 Sum_probs=50.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCC-chHHhHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL-PIQKDEEYL 130 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~-~~~~~~~~l 130 (175)
+.+++++|.|+|||....+ +...+.-....... -||..-|.+. ..|+.+.... ...+..+.... ..-++++.+
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~-lAk~L~c~~~~~~~---~~~~~~cg~c-~~C~~i~~g~-h~Dv~e~~a~s~~gvd~IReI 120 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARI-LARALNYEGPDGDG---GPTIDLCGVG-EHCQAIMEGR-HVDVLEMDAASHTGVDDIREI 120 (598)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHhhCcCCccccC---CCccccCccc-HHHHHHhcCC-CCceEEecccccCCHHHHHHH
Confidence 4699999999999976543 33333311100000 1332333332 2344554432 22222222211 112333333
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
... .+..-.+..-+.+|+||+|+.-....+.+++
T Consensus 121 ie~-------~~~~P~~a~~KVvIIDEad~Ls~~a~naLLK 154 (598)
T PRK09111 121 IES-------VRYRPVSARYKVYIIDEVHMLSTAAFNALLK 154 (598)
T ss_pred HHH-------HHhchhcCCcEEEEEEChHhCCHHHHHHHHH
Confidence 221 1111224578899999997666555555553
No 288
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.65 E-value=1.5 Score=40.88 Aligned_cols=126 Identities=11% Similarity=0.117 Sum_probs=92.4
Q ss_pred HHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhh------------------------------cCCCCeEEEEEe
Q psy1539 40 FQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE------------------------------TTDSNVYVLVMC 89 (175)
Q Consensus 40 ~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~------------------------------~~~~~~~~lil~ 89 (175)
-|++.+..+...-|++-.+.|--=+|+-..+.-+..+. .-..+.|+.||.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 47888888888888888888888888766554444331 013466999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HH-hcCCCeEEE--eecCccCCCCceEEEEeCCCCCCH
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YL-KTHNPQIVG--LVNYETNLSGVVVNVMDVRSGGWW 163 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l-~~~~~iiv~--l~~~~~~~~~~~~lVlDEad~~f~ 163 (175)
|..+-..++...++.+ .|..++++.+|..+..+-.+ .+ ....+++|+ ++...++.++...+|+|-||+.=.
T Consensus 811 NrV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGL 887 (1139)
T COG1197 811 NRVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGL 887 (1139)
T ss_pred cchhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccH
Confidence 9988887777766655 57999999999987543332 22 335688998 888899999999999999985434
Q ss_pred HHHHH
Q psy1539 164 LDLEA 168 (175)
Q Consensus 164 ~~v~~ 168 (175)
.|+++
T Consensus 888 sQLyQ 892 (1139)
T COG1197 888 AQLYQ 892 (1139)
T ss_pred HHHHH
Confidence 44443
No 289
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.62 E-value=0.23 Score=44.82 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=48.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhC-CCeEEEEEECCCc-hHHhHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM-SNIKVGVFFGGLP-IQKDEEY 129 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~i~v~~~~g~~~-~~~~~~~ 129 (175)
+-+++++|.|+|||.+..+-. ..++-. ++ ++-.-|..+ ..|+.+.... ....+..+.+... .-++++.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lA-r~L~C~-~~-------~~~~pCg~C-~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~ 107 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILA-RSLNCV-EG-------PTSTPCGEC-DSCVALAPGGPGSLDVTEIDAASHGGVDDARE 107 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HHhCcc-cC-------CCCCCCccc-HHHHHHHcCCCCCCcEEEecccccCCHHHHHH
Confidence 447999999999997664433 333211 11 111111111 1134433221 1344545544332 1234444
Q ss_pred HhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 130 LKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 130 l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il 170 (175)
+... .. ..-...+.+.+||||+|+.-....+.+|
T Consensus 108 l~~~--~~-----~~p~~~~~KV~IIDEad~lt~~a~NaLL 141 (824)
T PRK07764 108 LRER--AF-----FAPAESRYKIFIIDEAHMVTPQGFNALL 141 (824)
T ss_pred HHHH--HH-----hchhcCCceEEEEechhhcCHHHHHHHH
Confidence 4321 00 0111257789999999876665555544
No 290
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=94.60 E-value=0.52 Score=39.53 Aligned_cols=73 Identities=8% Similarity=0.157 Sum_probs=54.3
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
...++||.|+|+.-+..+.+.+.+. ++.+..++|+.+..+..+ .++++ ..++|+ +....+++++++++|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 3447999999999999888777543 778999999987654433 34444 467777 666688899999988
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-+.
T Consensus 316 ~~d~ 319 (460)
T PRK11776 316 NYEL 319 (460)
T ss_pred EecC
Confidence 7666
No 291
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.59 E-value=0.079 Score=42.23 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=20.3
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 48 AVLGMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+..|.++++.+|||||||.. +-.++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTl-l~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF-LKSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH-HHHHHccC
Confidence 44689999999999999964 33344433
No 292
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.59 E-value=0.71 Score=40.81 Aligned_cols=71 Identities=8% Similarity=0.094 Sum_probs=50.8
Q ss_pred CCcHHHHHhHHHHh---cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 36 EQTSFQHECIPQAV---LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~---~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
-|+|.=.+=|..+. +.+-.++.+|-|.|||++..+.+...+.. .+.++++.+|...-++++++.++...+.
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 34554444444444 45677888999999998776555544332 3578999999999999999988887763
No 293
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.59 E-value=0.44 Score=44.65 Aligned_cols=80 Identities=8% Similarity=0.083 Sum_probs=60.0
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
+.+++|++|+++-+..+.+.+++. .|+.++..++|+.+..+..+ .+++ ..+++|+ +....+++.+++++|+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~---~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi 885 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHh---CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE
Confidence 458999999998887776666654 45778999999987654333 3443 4678888 7778999999999999
Q ss_pred eCCC-CCCHH
Q psy1539 156 DVRS-GGWWL 164 (175)
Q Consensus 156 DEad-~~f~~ 164 (175)
+.+| ++..+
T Consensus 886 ~~ad~fglaq 895 (1147)
T PRK10689 886 ERADHFGLAQ 895 (1147)
T ss_pred ecCCCCCHHH
Confidence 9996 45443
No 294
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.56 E-value=0.38 Score=37.72 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=17.6
Q ss_pred HHHHhc-C--CcEEEEcCCCChHHHH
Q psy1539 45 IPQAVL-G--MDILCQAKSGMGKTAV 67 (175)
Q Consensus 45 i~~~~~-g--~~~ii~a~TGsGKT~~ 67 (175)
++.+.+ + +++++.+|+|+|||..
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 455543 3 6899999999999963
No 295
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.46 E-value=0.15 Score=45.70 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=74.5
Q ss_pred CCCcHHHHHhHHHHh-----cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCC-CeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 35 REQTSFQHECIPQAV-----LGMDILCQAKSGMGKTAVFVLATLQQLETTDS-NVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~-----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
..+.++|.+.+..+. .+.+.++...-|.|||+-.+.-+......... .+.+++++|+. +..++.+.+.++..
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k~~~- 414 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEKFAP- 414 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhhhCc-
Confidence 467888999886644 26788888999999997654444432222222 34789999985 55566666766654
Q ss_pred CCCeE-EEEEECCCch----HHhHHHHhc-C----CCeEEE----eec---C--ccCCCCceEEEEeCCC
Q psy1539 109 MSNIK-VGVFFGGLPI----QKDEEYLKT-H----NPQIVG----LVN---Y--ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 109 ~~~i~-v~~~~g~~~~----~~~~~~l~~-~----~~iiv~----l~~---~--~~~~~~~~~lVlDEad 159 (175)
.++ +...+|.... .+....+.+ . .+++++ +.+ . .+.-.....+|+||+.
T Consensus 415 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~ 482 (866)
T COG0553 415 --DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAH 482 (866)
T ss_pred --cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHH
Confidence 455 6677776641 233333332 1 345555 222 1 2334467889999984
No 296
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.44 E-value=0.18 Score=45.74 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=17.0
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 148 SGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 148 ~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+.+.+||||+++.-....+.+|+
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLK 141 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLK 141 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHH
Confidence 467899999998766555555443
No 297
>KOG0923|consensus
Probab=94.44 E-value=0.075 Score=46.32 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=38.6
Q ss_pred cHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC---CCCeEEEEEecCHHHHHHHHHH
Q psy1539 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
.++-.+.+.++....-++|.+.||||||.- +| +.+... +++.++-+--|.|--|.-+...
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGytk~gk~IgcTQPRRVAAmSVAaR 329 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGYTKGGKKIGCTQPRRVAAMSVAAR 329 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhcccccCCceEeecCcchHHHHHHHHH
Confidence 445555666777788899999999999963 23 223221 3343444555888777765554
No 298
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.19 Score=42.48 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~ 69 (175)
+.++++||+|+|||..+-
T Consensus 37 ~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347999999999996553
No 299
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.37 E-value=0.097 Score=42.38 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.+..+++++|||||||... ..++..+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhC
Confidence 3578999999999999654 45555554
No 300
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.36 E-value=0.33 Score=42.81 Aligned_cols=83 Identities=19% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEE
Q psy1539 80 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVN 153 (175)
Q Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~l 153 (175)
.++.+++|.++|+..+..+.+.+.+. ++.+..++|+.+..+.. +.+++| .+++|+ ++...+++.+++++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lV 514 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLV 514 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEE
Confidence 35668999999999998877766654 77888888886644333 344443 456655 77779999999999
Q ss_pred EEeCCC-CCCHHHHH
Q psy1539 154 VMDVRS-GGWWLDLE 167 (175)
Q Consensus 154 VlDEad-~~f~~~v~ 167 (175)
|+-++| .||..+.+
T Consensus 515 vi~DadifG~p~~~~ 529 (655)
T TIGR00631 515 AILDADKEGFLRSER 529 (655)
T ss_pred EEeCcccccCCCCHH
Confidence 988875 45543433
No 301
>PF12846 AAA_10: AAA-like domain
Probab=94.34 E-value=0.09 Score=40.88 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=23.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
.++++.|+||||||.... .++..+.. .+..++++=|.
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~--~g~~~~i~D~~ 38 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR--RGPRVVIFDPK 38 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH--cCCCEEEEcCC
Confidence 578999999999997665 44444332 22344444443
No 302
>PRK06526 transposase; Provisional
Probab=94.33 E-value=0.13 Score=39.99 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=28.1
Q ss_pred HHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
.+..+.++++.||+|+|||..... +...+.. .+.++++. ...++..++
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~a-l~~~a~~--~g~~v~f~-t~~~l~~~l 141 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIG-LGIRACQ--AGHRVLFA-TAAQWVARL 141 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHH-HHHHHHH--CCCchhhh-hHHHHHHHH
Confidence 334578999999999999965433 2222222 23345443 334455554
No 303
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.31 E-value=0.038 Score=42.85 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=36.3
Q ss_pred HHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 23 EKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 23 ~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
++++++|...|.....+.=-+.+.-+..|.-+++.|++|+|||.....-+.+.... .+..++++.-
T Consensus 2 ~~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~ 67 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISL 67 (271)
T ss_pred chhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEc
Confidence 35666676444332222111222345567899999999999996443333322221 2456777763
No 304
>PTZ00110 helicase; Provisional
Probab=94.30 E-value=0.89 Score=39.23 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=57.8
Q ss_pred HHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--ee
Q psy1539 68 FVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LV 141 (175)
Q Consensus 68 ~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~ 141 (175)
.+..++..+.. .+.++||.|+++.-|..+.+.++. . ++.+..++|+.+..+.. +.++++ .+++|+ +.
T Consensus 365 ~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~----~-g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~ 437 (545)
T PTZ00110 365 KLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRL----D-GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVA 437 (545)
T ss_pred HHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHH----c-CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchh
Confidence 34444444332 456899999999999887776653 2 67888899998755443 344444 467777 56
Q ss_pred cCccCCCCceEEEEeCC
Q psy1539 142 NYETNLSGVVVNVMDVR 158 (175)
Q Consensus 142 ~~~~~~~~~~~lVlDEa 158 (175)
...+++.+++++|.=+.
T Consensus 438 ~rGIDi~~v~~VI~~d~ 454 (545)
T PTZ00110 438 SRGLDVKDVKYVINFDF 454 (545)
T ss_pred hcCCCcccCCEEEEeCC
Confidence 66788888888886554
No 305
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.3 Score=41.71 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~ 70 (175)
+.++++||.|+|||.++-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999976543
No 306
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.22 Score=43.78 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~ 70 (175)
+-++++||.|+|||.++.+
T Consensus 38 HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4679999999999976543
No 307
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.31 Score=40.62 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~ 69 (175)
|.-+.+.+|||+|||....
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5668999999999997654
No 308
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.18 E-value=0.091 Score=44.84 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhc
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLET 78 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~ 78 (175)
.|+-+.+.+|+|||||. ++-++..+..
T Consensus 360 ~G~~vaIvG~SGsGKST--Ll~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKST--LLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 58899999999999996 3344444443
No 309
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.18 E-value=0.079 Score=39.93 Aligned_cols=21 Identities=10% Similarity=-0.385 Sum_probs=14.4
Q ss_pred CCceEEEEeCCCCCCHHHHHH
Q psy1539 148 SGVVVNVMDVRSGGWWLDLEA 168 (175)
Q Consensus 148 ~~~~~lVlDEad~~f~~~v~~ 168 (175)
...+.+++||+-+.....+..
T Consensus 61 ~~~~~liiDE~~~~~~g~l~~ 81 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPGYLLL 81 (234)
T ss_pred CcCCEEEEeccccCChHHHHH
Confidence 458899999995555444444
No 310
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.16 E-value=0.058 Score=41.94 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.1
Q ss_pred hHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 44 CIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 44 ~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
++..+..|.++++.+|+|+|||...
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 3445557899999999999999754
No 311
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.13 E-value=0.58 Score=39.31 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=53.2
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEE
Q psy1539 80 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVN 153 (175)
Q Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~l 153 (175)
....++||.|++++-+..+.+.+... ++.+..++|+.+..+.. +.++++ ..++|+ +....+++.+++++
T Consensus 243 ~~~~~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 243 GNWQQVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 34458999999999998877766532 77889999998754443 344443 467777 55567888888888
Q ss_pred EEeCC
Q psy1539 154 VMDVR 158 (175)
Q Consensus 154 VlDEa 158 (175)
|.=+.
T Consensus 318 I~~~~ 322 (456)
T PRK10590 318 VNYEL 322 (456)
T ss_pred EEeCC
Confidence 76554
No 312
>KOG1000|consensus
Probab=94.12 E-value=0.46 Score=40.33 Aligned_cols=115 Identities=21% Similarity=0.198 Sum_probs=67.7
Q ss_pred CCCcHHHHHhHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 35 REQTSFQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~-~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
..+-|+|.+-+...+ .|-.+++.-.-|-|||+-++ ++...... .+ -.||+||.. +-..+.+.+++|+... ..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyra--Ew-plliVcPAs-vrftWa~al~r~lps~--~p 269 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYRA--EW-PLLIVCPAS-VRFTWAKALNRFLPSI--HP 269 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHhh--cC-cEEEEecHH-HhHHHHHHHHHhcccc--cc
Confidence 356789999887655 57888899999999997653 33333332 23 368889964 3345666677776543 22
Q ss_pred EEEEECCCchHHhHHHHhcCCCeEEE---eecC---ccCCCCceEEEEeCCC
Q psy1539 114 VGVFFGGLPIQKDEEYLKTHNPQIVG---LVNY---ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~l~~~~~iiv~---l~~~---~~~~~~~~~lVlDEad 159 (175)
+.++.++.+.-.. +.....+.|. +..+ .+.-...+.+|+||.+
T Consensus 270 i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH 318 (689)
T KOG1000|consen 270 IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESH 318 (689)
T ss_pred eEEEecccCCccc---cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechh
Confidence 4455555442211 1111223222 1111 3344568999999984
No 313
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=94.11 E-value=0.087 Score=43.36 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=32.2
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 46 PQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 46 ~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
|.-...+++++.+.||||||. ++..++..+.. .+-+++|.=|.-+....
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~--~g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQ-AIRHLLDQIRA--RGDRAIIYDPKGEFTER 58 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHH--TT-EEEEEEETTHHHHH
T ss_pred ccchhhCcEEEECCCCCCHHH-HHHHHHHHHHH--cCCEEEEEECCchHHHH
Confidence 344566899999999999996 45667766654 24477887788766543
No 314
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.2 Score=41.35 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~ 70 (175)
+.+++++|.|+|||.++..
T Consensus 39 ha~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3488999999999976543
No 315
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.03 E-value=0.63 Score=37.40 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=29.7
Q ss_pred CCCCcHHHHHhHHHHh----cC---CcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 34 FREQTSFQHECIPQAV----LG---MDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~----~g---~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+..++|+|..+|..+. +| +-+++.+|.|.||+..+ ..+.+.+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~L 50 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHV 50 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHH
Confidence 3467899999987665 34 35899999999998543 3344444
No 316
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.03 E-value=0.42 Score=42.70 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=40.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec-C-HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH-T-RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 129 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P-t-~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~ 129 (175)
+-+.+.+|||+|||.+...-....... .++.++.++.- + |.=+ .++++.+.+.. ++.+..........+.++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~kkV~lit~Dt~RigA---~eQL~~~a~~~-gvpv~~~~~~~~l~~al~~ 260 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAR-EGADQLALLTTDSFRIGA---LEQLRIYGRIL-GVPVHAVKDAADLRFALAA 260 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHH-cCCCeEEEecCcccchHH---HHHHHHHHHhC-CCCccccCCHHHHHHHHHH
Confidence 457899999999997654322222112 12224444443 2 2112 34566666665 6655433322222233333
Q ss_pred HhcCCCeEEE
Q psy1539 130 LKTHNPQIVG 139 (175)
Q Consensus 130 l~~~~~iiv~ 139 (175)
+. +.++|+.
T Consensus 261 ~~-~~D~VLI 269 (767)
T PRK14723 261 LG-DKHLVLI 269 (767)
T ss_pred hc-CCCEEEE
Confidence 43 4566665
No 317
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.02 E-value=0.074 Score=46.29 Aligned_cols=49 Identities=29% Similarity=0.106 Sum_probs=37.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
.++++.||||||||..+++|-+-.+. .-++|+=|--|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~-----~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE-----DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC-----CCEEEEeCcHHHHHHHHHHHHHC
Confidence 57999999999999999999987642 13677778888887766555443
No 318
>KOG0058|consensus
Probab=94.02 E-value=0.072 Score=46.67 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=23.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCC
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTD 80 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~ 80 (175)
.|+.+-+.+|.|+|||.+ ..++.+++...
T Consensus 493 pGe~vALVGPSGsGKSTi--asLL~rfY~Pt 521 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTI--ASLLLRFYDPT 521 (716)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhcCCC
Confidence 589999999999999985 46677776543
No 319
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.37 Score=41.90 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=49.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhC-CCeEEEEEECCCc-hHHhHHHH
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM-SNIKVGVFFGGLP-IQKDEEYL 130 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~i~v~~~~g~~~-~~~~~~~l 130 (175)
-+++++|.|+|||.+..+ +...+.-. ++ |+-+-|.+.. .|+.+.... ....+..+.+..+ .-++.+.+
T Consensus 37 a~Lf~Gp~G~GKTt~A~~-lAk~l~c~-~~-------~~~~pCg~C~-~C~~i~~~~~~~~dvieidaas~~gvd~iRel 106 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARI-LARSLNCA-QG-------PTATPCGVCE-SCVALAPNGPGSIDVVELDAASHGGVDDTREL 106 (584)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhccc-cC-------CCCCcccccH-HHHHhhcccCCCceEEEeccccccCHHHHHHH
Confidence 368999999999976544 33333211 11 1111122211 244443211 1234444444322 12333333
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+. ....-...+-+.+|+||+|+.-....+.+++
T Consensus 107 ~~~-------~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK 140 (584)
T PRK14952 107 RDR-------AFYAPAQSRYRIFIVDEAHMVTTAGFNALLK 140 (584)
T ss_pred HHH-------HHhhhhcCCceEEEEECCCcCCHHHHHHHHH
Confidence 321 0111123578999999998776666555543
No 320
>PRK04328 hypothetical protein; Provisional
Probab=93.97 E-value=0.14 Score=39.47 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=33.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.|..+++.+++|+|||....--+.+.+.. +-.+++++ +.+-..++.+.++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 46789999999999996544444444432 33567766 4445555666665553
No 321
>KOG0335|consensus
Probab=93.95 E-value=1.3 Score=37.35 Aligned_cols=151 Identities=12% Similarity=0.031 Sum_probs=93.4
Q ss_pred cccccCCCCHHHHHHHhhCCC-------------CCCcHHHHHhHHHHhcCCcEEEEcCCCChHH--------------H
Q psy1539 14 KVLSSRNRREKEDRIGESQPF-------------REQTSFQHECIPQAVLGMDILCQAKSGMGKT--------------A 66 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~~g~-------------~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT--------------~ 66 (175)
+-.+++++-|++.+.+...+- +.|..+|..+...+.+++..+-.+.-|+.-- .
T Consensus 237 rMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr 316 (482)
T KOG0335|consen 237 RMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKR 316 (482)
T ss_pred HhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhH
Confidence 345568888888887766654 2578899966666666676666666654311 1
Q ss_pred HHHHHHHHhhhcC-----CCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHH---hc-CCCeE
Q psy1539 67 VFVLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL---KT-HNPQI 137 (175)
Q Consensus 67 ~~~~~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l---~~-~~~ii 137 (175)
..++-++...... ...-+.++.|-|+.-+.++...+... +.....++|+....+..+.+ ++ .+|++
T Consensus 317 ~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~-----~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 317 SKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN-----GYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred HHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC-----CCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 2233333322211 01126889999998888866655432 77788888887655554444 33 36888
Q ss_pred EE--eecCccCCCCceEEEEeCCCCCCHHHHHHH
Q psy1539 138 VG--LVNYETNLSGVVVNVMDVRSGGWWLDLEAL 169 (175)
Q Consensus 138 v~--l~~~~~~~~~~~~lVlDEad~~f~~~v~~i 169 (175)
|+ +..+.+++++++++|.=+.-..+-+++..|
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRI 425 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRI 425 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhc
Confidence 88 666788899999988766522244444443
No 322
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.95 E-value=3.3 Score=36.45 Aligned_cols=122 Identities=15% Similarity=0.233 Sum_probs=81.4
Q ss_pred cHHHHHhHHHHhc-CCcEEEEcCCCChHHHHHHH------HHHHhh------------------------h-cCCCCeEE
Q psy1539 38 TSFQHECIPQAVL-GMDILCQAKSGMGKTAVFVL------ATLQQL------------------------E-TTDSNVYV 85 (175)
Q Consensus 38 t~~Q~~~i~~~~~-g~~~ii~a~TGsGKT~~~~~------~~l~~l------------------------~-~~~~~~~~ 85 (175)
=-.|+..+..--. ..++++.+.|--=+|+|... .++..+ . .-.+|.|+
T Consensus 397 GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 397 GVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQA 476 (677)
T ss_pred cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEE
Confidence 3456665543323 45888888888888876432 111111 0 01356799
Q ss_pred EEEecCHHHHH-----HHHHHHHHHHhhCCCeEEEEEECCCchH---HhHHHHhc-CCCeEEE--eecCccCCCCceEEE
Q psy1539 86 LVMCHTRELAF-----QISKEYERFSKYMSNIKVGVFFGGLPIQ---KDEEYLKT-HNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 86 lil~Pt~~L~~-----q~~~~~~~~~~~~~~i~v~~~~g~~~~~---~~~~~l~~-~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+|||..+-.+ -..+.+..+...+|+.++++++|..+.+ +-++.+++ ..+|+|+ ++.-.++.++-.+.|
T Consensus 477 Y~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred EEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 99999766543 3334455555566789999999998743 33456666 5688888 666789999999999
Q ss_pred EeCCC
Q psy1539 155 MDVRS 159 (175)
Q Consensus 155 lDEad 159 (175)
+..|+
T Consensus 557 Ie~AE 561 (677)
T COG1200 557 IENAE 561 (677)
T ss_pred Eechh
Confidence 99995
No 323
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.93 E-value=1.1 Score=37.85 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
...++||.|++++-+..+.+.+.+. ++.+..++|+.+..+.. +.+++| ..++|+ +....+++.+++++|
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI 408 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI 408 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEE
Confidence 4458999999999988877666432 67788889988765443 344444 466777 666688888888888
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-..
T Consensus 409 ~~~~ 412 (475)
T PRK01297 409 NFTL 412 (475)
T ss_pred EeCC
Confidence 7655
No 324
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.93 E-value=0.33 Score=42.47 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=50.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCch-HHhHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI-QKDEEYL 130 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~-~~~~~~l 130 (175)
+.++++||.|.|||.++.+ +...+.-.......-+.-++.+-|.+ ...|+.+.... ...+..+.|+... -++++.+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~-lAk~L~c~~~~~~~~~~~~~~~~Cg~-C~sC~~~~~g~-~~n~~~~d~~s~~~vd~Ir~l 115 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV-FAKAVNCQRMIDDPVYLQEVTEPCGE-CESCRDFDAGT-SLNISEFDAASNNSVDDIRQL 115 (620)
T ss_pred eeEEEECCCCCCHHHHHHH-HHHHhCCCCcCCccccccccCCCCcc-CHHHHHHhccC-CCCeEEecccccCCHHHHHHH
Confidence 4588999999999976543 22333211100000000011122222 12345554433 3444445553322 2444443
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il 170 (175)
... ....-.+.+-+.+|+||+|..-....+.++
T Consensus 116 ~e~-------~~~~P~~~~~KVvIIdEad~Lt~~a~naLL 148 (620)
T PRK14954 116 REN-------VRYGPQKGRYRVYIIDEVHMLSTAAFNAFL 148 (620)
T ss_pred HHH-------HHhhhhcCCCEEEEEeChhhcCHHHHHHHH
Confidence 321 111123457789999999755444444443
No 325
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.92 E-value=0.43 Score=40.50 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~ 69 (175)
|.-+.+.+|||+|||.+..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4558899999999998654
No 326
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.86 E-value=0.25 Score=46.29 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.++++|.|+-|||||....--++..+......-+.++|+-|+.=+.++.+.+.+...
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 578999999999999887766666665443345799999999999998888766554
No 327
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.85 E-value=0.12 Score=39.84 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=18.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
-++++.|++||||| .++.-++..+.
T Consensus 14 fr~viIG~sGSGKT-~li~~lL~~~~ 38 (241)
T PF04665_consen 14 FRMVIIGKSGSGKT-TLIKSLLYYLR 38 (241)
T ss_pred ceEEEECCCCCCHH-HHHHHHHHhhc
Confidence 37899999999999 45566665543
No 328
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.84 E-value=0.29 Score=42.80 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=18.8
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 148 SGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 148 ~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+.+.+||||+|+.-....+.+++
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLK 146 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLK 146 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHH
Confidence 468999999998877777666654
No 329
>PRK08727 hypothetical protein; Validated
Probab=93.83 E-value=0.22 Score=38.02 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=31.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
..+++.||+|+|||-. +.++...+.. .+.+++++ |..++.....+.++.+.
T Consensus 42 ~~l~l~G~~G~GKThL-~~a~~~~~~~--~~~~~~y~-~~~~~~~~~~~~~~~l~ 92 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL-ALALCAAAEQ--AGRSSAYL-PLQAAAGRLRDALEALE 92 (233)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH--cCCcEEEE-eHHHhhhhHHHHHHHHh
Confidence 4599999999999943 3344444433 34466665 45555555555555443
No 330
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.79 E-value=0.19 Score=39.03 Aligned_cols=38 Identities=18% Similarity=0.024 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.|.-++|.+++|+|||...+.-+.+.+. ++-+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEe
Confidence 4678999999999999755443333332 3446788773
No 331
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.43 Score=41.52 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~ 69 (175)
+.++++||.|+|||....
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~ 56 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTAR 56 (585)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456899999999996543
No 332
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.68 E-value=0.19 Score=38.29 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=32.3
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
..|.-+++.+++|+|||....--+...+. ++.++++++.. +-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 45788999999999999754333333222 34467888743 3334444444443
No 333
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.67 E-value=0.45 Score=40.09 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
|.-+++.+++|+|||...+.- +..+.. ++.+++|+... +-..|+....+++.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~-a~~~a~--~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQV-ACQLAK--NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHH-HHHHHh--cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 467899999999999655443 333322 23368888754 44566666555553
No 334
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.66 E-value=0.11 Score=39.23 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=29.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
.+++.||+|+|||- .+.++.+.+.....+.+++++... +....
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~~~~v~y~~~~-~f~~~ 78 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQHPGKRVVYLSAE-EFIRE 78 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHCTTS-EEEEEHH-HHHHH
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhccccccceeecHH-HHHHH
Confidence 58999999999995 566777666554456677777543 44433
No 335
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=93.65 E-value=0.13 Score=39.77 Aligned_cols=77 Identities=23% Similarity=0.246 Sum_probs=57.9
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCC-chHHhHHHHhc-CCCeEEE--------eecCccCCCC
Q psy1539 80 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL-PIQKDEEYLKT-HNPQIVG--------LVNYETNLSG 149 (175)
Q Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~-~~~~~~~~l~~-~~~iiv~--------l~~~~~~~~~ 149 (175)
.+.|.+|||+.+---|..+.+.++.+... +..|+-+++.. ...++...+++ ..++.|| +.+..+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 46789999999988888888888777422 35666667665 77899999986 4567777 3333788899
Q ss_pred ceEEEEeCC
Q psy1539 150 VVVNVMDVR 158 (175)
Q Consensus 150 ~~~lVlDEa 158 (175)
++++|+|--
T Consensus 202 l~~ivlD~s 210 (252)
T PF14617_consen 202 LKRIVLDWS 210 (252)
T ss_pred CeEEEEcCC
Confidence 999999963
No 336
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.62 E-value=1.5 Score=34.35 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=31.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEE
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKV 114 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v 114 (175)
+-+.+.+|+|+|||.+..--+. .+.. .+.+++++. +.|.-+. ++++.+.... ++.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~-~l~~--~g~~V~li~~D~~r~~a~---~ql~~~~~~~-~i~~ 130 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLAN-KLKK--QGKSVLLAAGDTFRAAAI---EQLEEWAKRL-GVDV 130 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHh--cCCEEEEEeCCCCCHHHH---HHHHHHHHhC-CeEE
Confidence 4577889999999976543332 2222 344566665 3344433 2455555544 5443
No 337
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.61 E-value=0.071 Score=32.10 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|...++.+++|||||..+
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999743
No 338
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.55 E-value=0.42 Score=41.36 Aligned_cols=102 Identities=13% Similarity=0.032 Sum_probs=49.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCc-hHHhHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP-IQKDEEYL 130 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~-~~~~~~~l 130 (175)
+-++++||.|+|||.+.-.-. ..+.-. +. +..+-|.+. +.|+.+.... ...+..+.+... .-++++.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA-kal~c~-~~-------~~~~pC~~C-~~C~~i~~g~-~~dv~eidaas~~~vd~ir~i 107 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA-KAVNCL-NP-------PDGEPCNEC-EICKAITNGS-LMDVIEIDAASNNGVDEIRDI 107 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHhcCC-CC-------CCCCCCCcc-HHHHHHhcCC-CCCeEEeeccccCCHHHHHHH
Confidence 457889999999997654322 222211 10 000111111 1344444332 333444433221 12233333
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
... ....-...+-+.+|+||+|+.-......+++
T Consensus 108 ~~~-------v~~~p~~~~~kViIIDE~~~Lt~~a~naLLK 141 (559)
T PRK05563 108 RDK-------VKYAPSEAKYKVYIIDEVHMLSTGAFNALLK 141 (559)
T ss_pred HHH-------HhhCcccCCeEEEEEECcccCCHHHHHHHHH
Confidence 321 0111123578899999998776666666654
No 339
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.55 E-value=0.58 Score=37.09 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=11.8
Q ss_pred cEEE-EcCCCChHHHH
Q psy1539 53 DILC-QAKSGMGKTAV 67 (175)
Q Consensus 53 ~~ii-~a~TGsGKT~~ 67 (175)
+.++ .||+|+|||..
T Consensus 44 ~~lll~G~~G~GKT~l 59 (316)
T PHA02544 44 NMLLHSPSPGTGKTTV 59 (316)
T ss_pred eEEEeeCcCCCCHHHH
Confidence 4555 89999999954
No 340
>PRK09183 transposase/IS protein; Provisional
Probab=93.51 E-value=0.23 Score=38.60 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=28.7
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
+.+|.++++.+|+|+|||..... +...... .+..++++ +..++..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a-l~~~a~~--~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA-LGYEAVR--AGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH-HHHHHHH--cCCeEEEE-eHHHHHHHH
Confidence 45689999999999999954432 2222222 34355554 445666443
No 341
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.51 E-value=0.57 Score=35.13 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcC---CCCeEEEEEecCH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCHTR 92 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt~ 92 (175)
|.-+.+.+++|+|||...+.-+....... ....+++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 57789999999999975554333332221 0124677877643
No 342
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.50 E-value=0.25 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|+-+.+.+++|+|||..
T Consensus 24 ~~Ge~~~i~G~nGsGKStL 42 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTL 42 (144)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999963
No 343
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.47 E-value=0.85 Score=35.98 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=19.0
Q ss_pred cCCc-EEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 50 LGMD-ILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 50 ~g~~-~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
++.. +++.+|+|+|||.++ ..+.+.+.
T Consensus 22 ~~~halL~~Gp~G~Gktt~a-~~lA~~l~ 49 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAA-LALAKELL 49 (325)
T ss_pred CCCceeeeeCCCCCCHHHHH-HHHHHHHh
Confidence 3455 999999999999664 44444443
No 344
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.47 E-value=0.46 Score=41.84 Aligned_cols=24 Identities=13% Similarity=-0.051 Sum_probs=18.6
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 148 SGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 148 ~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+.+.+||||+|+.-....+.+|+
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLK 146 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLK 146 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHH
Confidence 468899999998776666666665
No 345
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.4 Score=41.91 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~ 70 (175)
..+++++|.|+|||.+..+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999976543
No 346
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.45 E-value=0.25 Score=37.32 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=29.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 104 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (175)
.|..+++.+++|+|||.....-+.+.+. ++..++++.. .+...++.+..+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEc-cCCHHHHHHHHHH
Confidence 4689999999999999654433333332 2335666664 3333444444333
No 347
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.42 E-value=0.26 Score=39.61 Aligned_cols=43 Identities=16% Similarity=0.055 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 96 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~ 96 (175)
|+-+.+.+|+|||||...+..+.+... .+..++++.....+-.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHH
Confidence 467889999999999765544444332 2446777765554443
No 348
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.42 E-value=0.11 Score=45.67 Aligned_cols=47 Identities=23% Similarity=0.183 Sum_probs=35.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
.++++.||||||||..+++|-+-.+. + .++|+=|--|+........+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~----g-S~VV~DpKGE~~~~Ta~~R~ 186 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK----G-SVIALDVKGELFELTSRARK 186 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC----C-CEEEEeCCchHHHHHHHHHH
Confidence 58999999999999999999876532 1 47777788888766544443
No 349
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.41 E-value=0.44 Score=37.09 Aligned_cols=28 Identities=7% Similarity=0.008 Sum_probs=21.2
Q ss_pred CCCCceEEEEeCC----CCCCHHHHHHHHhhh
Q psy1539 146 NLSGVVVNVMDVR----SGGWWLDLEALILSK 173 (175)
Q Consensus 146 ~~~~~~~lVlDEa----d~~f~~~v~~il~~~ 173 (175)
..++-+.+.+||- |..+.-++-+++.+.
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l 184 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHH
Confidence 3467889999998 777777777777653
No 350
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.34 E-value=2.8 Score=34.37 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.+.+.+.|+.|.|||+. +-+.-...+.+.+.+ ++-.+...++.+.+.++.
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~ 111 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKRKRR----VHFHEFMLDVHSRLHQLR 111 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCcccccc----ccccHHHHHHHHHHHHHh
Confidence 47899999999999973 333322222111111 144466666666666554
No 351
>KOG0333|consensus
Probab=93.30 E-value=0.66 Score=39.63 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=52.9
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
..+.++|.+.++.=|.-+.+.+.+. ++++..++||.+..+... .+++ ..+|+|+ ...+.++..++.++|
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVi 590 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVI 590 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceee
Confidence 4578999999998887766666655 789999999988654443 3444 4688888 666688999999887
Q ss_pred E
Q psy1539 155 M 155 (175)
Q Consensus 155 l 155 (175)
-
T Consensus 591 n 591 (673)
T KOG0333|consen 591 N 591 (673)
T ss_pred e
Confidence 4
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.25 E-value=0.066 Score=41.98 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.7
Q ss_pred HHhcCCcEEEEcCCCChHHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~ 67 (175)
.+.+++.++++||+|+|||..
T Consensus 29 l~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHH
T ss_pred HHHcCCcEEEECCCCCchhHH
Confidence 344689999999999999964
No 353
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=93.23 E-value=0.27 Score=42.62 Aligned_cols=31 Identities=13% Similarity=-0.125 Sum_probs=23.8
Q ss_pred ccCCCCceEEEEeCC----CCCCHHHHHHHHhhhc
Q psy1539 144 ETNLSGVVVNVMDVR----SGGWWLDLEALILSKC 174 (175)
Q Consensus 144 ~~~~~~~~~lVlDEa----d~~f~~~v~~il~~~~ 174 (175)
++.+.+-+++|+||| |..-+..+.+.++.+|
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l 562 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL 562 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC
Confidence 345678999999999 6677777777777655
No 354
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.12 E-value=0.49 Score=41.62 Aligned_cols=24 Identities=17% Similarity=0.009 Sum_probs=18.0
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 148 SGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 148 ~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+.+.+||||+|+.-....+.+|+
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLK 141 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLK 141 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHH
Confidence 478899999998776666666554
No 355
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=93.11 E-value=1.4 Score=38.54 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=54.3
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.|+|+.-+.++.+.+++. ++.+..++|+.+..+..+ .+.+ ..+++|+ .....+++++++++|
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI 309 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE
Confidence 3457899999999999887777643 788999999987554433 3333 3577887 556689999999998
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-..
T Consensus 310 ~~d~ 313 (607)
T PRK11057 310 HFDI 313 (607)
T ss_pred EeCC
Confidence 6655
No 356
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=93.10 E-value=0.095 Score=43.47 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=29.9
Q ss_pred HHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHH
Q psy1539 45 IPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95 (175)
Q Consensus 45 i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (175)
+|.-...+++++.|+||||||.. +..++..+.. .+.+++|+=|..++.
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~--~~~~~vi~D~kg~~~ 83 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA--RGDRAIIYDPNGGFV 83 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh--cCCCEEEEeCCcchh
Confidence 44444568999999999999975 4444444332 122455555655544
No 357
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.10 E-value=0.53 Score=34.29 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=32.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhc-------CCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLET-------TDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~-------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.|.=.++.|++|+|||...+--+...... .....+++++..--. ..++.+.+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 56779999999999996544333333321 013457788766544 4566666666554
No 358
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.06 E-value=2 Score=35.01 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
-+++.+|.|+|||... ..+...+.
T Consensus 47 a~L~~G~~G~GKttlA-~~lA~~Ll 70 (351)
T PRK09112 47 ALLFEGPEGIGKATLA-FHLANHIL 70 (351)
T ss_pred eEeeECCCCCCHHHHH-HHHHHHHc
Confidence 5999999999999544 33444443
No 359
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.06 E-value=0.38 Score=42.22 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-CCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.+++-|++|+... ...++|.|+.|||||.+-..-+...+... -...+.+.++=|+.-|.++.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999988655 56778889999999987665555554432 1222588888899999998888888875
No 360
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.01 E-value=0.23 Score=38.39 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=34.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.|+.++|.+++|||||....--+.+.+.. +-.++++ .+.+...++.+.+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyv-s~~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYV-STEESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEE-EecCCHHHHHHHHHHcC
Confidence 46899999999999996554444444332 3355655 45566666666666543
No 361
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.98 E-value=0.94 Score=36.49 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=22.7
Q ss_pred cHHHHHhHHHHh----cC---CcEEEEcCCCChHHHHH
Q psy1539 38 TSFQHECIPQAV----LG---MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 38 t~~Q~~~i~~~~----~g---~~~ii~a~TGsGKT~~~ 68 (175)
+|+|+..|..+. +| +-.++.||.|.||+..+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA 41 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI 41 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH
Confidence 567777776554 34 56889999999999544
No 362
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.96 E-value=1.8 Score=31.02 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=12.7
Q ss_pred EEEEcCCCChHHHHH
Q psy1539 54 ILCQAKSGMGKTAVF 68 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~ 68 (175)
+++.+++|+|||...
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999764
No 363
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.92 E-value=0.25 Score=35.53 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhc
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLET 78 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~ 78 (175)
++.+++.|+.|+|||.. +-.++.++..
T Consensus 24 ~~~~ll~G~~G~GKT~l-l~~~~~~~~~ 50 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSL-LRALLDRLAE 50 (185)
T ss_dssp ---EEE-B-TTSSHHHH-HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 47899999999999953 3445555544
No 364
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=92.91 E-value=0.26 Score=36.53 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQ 74 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~ 74 (175)
..+++|.+.||||||.+...-+..
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~ 61 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLS 61 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCccHHHHHHHHH
Confidence 458999999999999665433333
No 365
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.91 E-value=0.67 Score=40.15 Aligned_cols=102 Identities=16% Similarity=0.063 Sum_probs=49.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCC-chHHhHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL-PIQKDEEYL 130 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~-~~~~~~~~l 130 (175)
+-+++.||.|.|||.+... +...+... .+ ++.+-|.+.. .++.+.... ...+..+.|.. ..-++++.+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~-lAk~L~c~-~~-------~~~~pC~~C~-~C~~i~~~~-~~dv~~idgas~~~vddIr~l 107 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA-FARCLNCV-NG-------PTPMPCGECS-SCKSIDNDN-SLDVIEIDGASNTSVQDVRQI 107 (563)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHhhccc-cC-------CCCCCCccch-HHHHHHcCC-CCCeEEecCcccCCHHHHHHH
Confidence 4578999999999976533 33433321 11 1111121111 234443332 34444444443 212333333
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
... ........+-+.+|+||+++.-....+.+++
T Consensus 108 ~e~-------~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK 141 (563)
T PRK06647 108 KEE-------IMFPPASSRYRVYIIDEVHMLSNSAFNALLK 141 (563)
T ss_pred HHH-------HHhchhcCCCEEEEEEChhhcCHHHHHHHHH
Confidence 211 0111124678899999998665555555543
No 366
>PRK05642 DNA replication initiation factor; Validated
Probab=92.88 E-value=0.42 Score=36.52 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=27.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
..++++||+|+|||-. +.++.+.+.. .+.+++++. ..++....
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~--~~~~v~y~~-~~~~~~~~ 88 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQ--RGEPAVYLP-LAELLDRG 88 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHh--CCCcEEEee-HHHHHhhh
Confidence 5789999999999953 4455554433 244666654 45666543
No 367
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.87 E-value=0.74 Score=37.00 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=17.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+.+++.||+|+|||... ..+...+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l~ 61 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKALN 61 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhc
Confidence 45789999999999543 44444443
No 368
>PRK09354 recA recombinase A; Provisional
Probab=92.85 E-value=0.35 Score=39.27 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 96 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~ 96 (175)
|+-+.+.+|+|||||...+..+.+... .+..++++..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHH
Confidence 467889999999999766555544433 3457888887665553
No 369
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.84 E-value=0.33 Score=40.71 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=28.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (175)
..+++.||+|+|||.. +.++.+.+.....+.+++++ +..++..+..
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEKNPNAKVVYV-TSEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEE-EHHHHHHHHH
Confidence 4699999999999953 45555555543334566666 4445544433
No 370
>PTZ00424 helicase 45; Provisional
Probab=92.83 E-value=1.5 Score=35.91 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=52.8
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
...++++.|+|++-+..+.+.++.. ++.+..++|+.+..+... .+++| .+++|+ +....+++++++++|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 3457999999999888776665432 678899999987554433 34443 567777 666788999999998
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-..
T Consensus 341 ~~~~ 344 (401)
T PTZ00424 341 NYDL 344 (401)
T ss_pred EECC
Confidence 6554
No 371
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.82 E-value=0.26 Score=39.68 Aligned_cols=43 Identities=19% Similarity=0.056 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 96 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~ 96 (175)
|+-+.+.+|+|+|||...+..+.+... .+..++++.+...+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHH
Confidence 467889999999999655544444332 3447888887655543
No 372
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.81 E-value=0.93 Score=39.03 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=16.8
Q ss_pred CCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 147 LSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 147 ~~~~~~lVlDEad~~f~~~v~~il 170 (175)
....+.+|+||||+.-.+..+.++
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~NALL 138 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAFNALL 138 (535)
T ss_pred cCCeEEEEEECcccCCHHHHHHHH
Confidence 357899999999866555544443
No 373
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.80 E-value=0.16 Score=38.68 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=21.7
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHhhhc
Q psy1539 48 AVLGMDILCQAKSGMGKTAVFVLATLQQLET 78 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~ 78 (175)
+..|.-+.|.+|+|||||. ++-++.-+..
T Consensus 28 i~~Ge~vaI~GpSGSGKST--LLniig~ld~ 56 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKST--LLNLLGGLDK 56 (226)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcccC
Confidence 3468899999999999997 4555555543
No 374
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=92.80 E-value=0.26 Score=46.17 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=44.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcC--CCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETT--DSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.+.+++|.|..|||||.+..--+++.+... -.-.+.|+++-|+.=+.+....+.+-..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~ 74 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLK 74 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHH
Confidence 468999999999999988777777777653 2334689999998888887777655433
No 375
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.73 E-value=0.59 Score=35.29 Aligned_cols=41 Identities=12% Similarity=-0.040 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcC---CCCeEEEEEec
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCH 90 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P 90 (175)
.|.-+.+.+++|+|||.....-++...... ..+..++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 357789999999999966544433322221 01246788774
No 376
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.73 E-value=0.37 Score=39.82 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=28.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
..+++.||+|+|||.. +.++.+.+.....+..++++.. .++..+.
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~~~~~~v~yi~~-~~~~~~~ 181 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILENNPNAKVVYVSS-EKFTNDF 181 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHhCCCCcEEEEEH-HHHHHHH
Confidence 4589999999999954 3555555554333456777643 4444443
No 377
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=92.69 E-value=0.37 Score=42.32 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH--HHHHHHHHHHHHHh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE--LAFQISKEYERFSK 107 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~--L~~q~~~~~~~~~~ 107 (175)
..+++|.++||+|||..+..-+.+.+.. +..++++=|-.+ |...+...+++.+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~---g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR---GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 3689999999999997764444444432 345677777654 76666666666643
No 378
>PF05729 NACHT: NACHT domain
Probab=92.68 E-value=0.27 Score=34.56 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhc
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLET 78 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~ 78 (175)
-++|.|+.|+|||.. +--++..+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 378999999999964 3444444443
No 379
>KOG1131|consensus
Probab=92.66 E-value=1.1 Score=38.30 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=44.8
Q ss_pred CCCCCcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhcCC-CCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 33 PFREQTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTD-SNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.|...+|-|.+-.-.+. .+-+.++..|+|+|||.+.+--++.+-..-+ ...+.++-+-|..-.+.....++++.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l~ 91 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRLM 91 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHHH
Confidence 35667888877665443 3467889999999999876654444432222 33355555555544444445555543
No 380
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.66 E-value=0.74 Score=41.28 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=17.0
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 148 SGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 148 ~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.+.+++||||+|+.-....+.+|+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLK 141 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLK 141 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHH
Confidence 467999999998765555555544
No 381
>KOG0744|consensus
Probab=92.62 E-value=0.79 Score=37.03 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+=+++.+|+|+||| ...=++.+++.
T Consensus 178 RliLlhGPPGTGKT-SLCKaLaQkLS 202 (423)
T KOG0744|consen 178 RLILLHGPPGTGKT-SLCKALAQKLS 202 (423)
T ss_pred eEEEEeCCCCCChh-HHHHHHHHhhe
Confidence 45789999999999 34455566653
No 382
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.61 E-value=0.092 Score=35.31 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=12.7
Q ss_pred EEEEcCCCChHHHHH
Q psy1539 54 ILCQAKSGMGKTAVF 68 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~ 68 (175)
++|.+++|||||...
T Consensus 2 I~I~G~~gsGKST~a 16 (121)
T PF13207_consen 2 IIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999643
No 383
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.61 E-value=0.74 Score=39.57 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~ 70 (175)
+-+++.||.|+|||.....
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3468999999999976543
No 384
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.55 E-value=0.2 Score=40.94 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=23.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
.|+.+++.+|+|+||| |..+++.+.+.. +-|.+-+..
T Consensus 49 aGr~iLiaGppGtGKT-AlA~~ia~eLG~--~~PF~~isg 85 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKT-ALAMAIAKELGE--DVPFVSISG 85 (398)
T ss_dssp TT-EEEEEE-TTSSHH-HHHHHHHHHCTT--TS-EEEEEG
T ss_pred cCcEEEEeCCCCCCch-HHHHHHHHHhCC--CCCeeEccc
Confidence 3789999999999999 455667666653 445554443
No 385
>KOG0926|consensus
Probab=92.51 E-value=0.85 Score=41.00 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=52.1
Q ss_pred hHHHHhcCCcEEEEcCCCChHHHHHHHHHHH--hhhcC--CCCeEEEEEe-cCHHHHHHHHHHH-HHHHhhCCCeEEEEE
Q psy1539 44 CIPQAVLGMDILCQAKSGMGKTAVFVLATLQ--QLETT--DSNVYVLVMC-HTRELAFQISKEY-ERFSKYMSNIKVGVF 117 (175)
Q Consensus 44 ~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~--~l~~~--~~~~~~lil~-Pt~~L~~q~~~~~-~~~~~~~~~i~v~~~ 117 (175)
....|..+.-++||+.||||||.- +|-+- .=... ...+..|=|+ |.|--|.-..+.. ..+...-..+.....
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 344555667799999999999963 22211 10111 1122233343 6665554443332 233321113333333
Q ss_pred ECCCchHHhHHHHhcCCCeEEE----eec---CccCCCCceEEEEeCCC
Q psy1539 118 FGGLPIQKDEEYLKTHNPQIVG----LVN---YETNLSGVVVNVMDVRS 159 (175)
Q Consensus 118 ~g~~~~~~~~~~l~~~~~iiv~----l~~---~~~~~~~~~~lVlDEad 159 (175)
+.|+- .+ ...|-.. |++ +.+.+..-..+|+|||+
T Consensus 342 fd~ti-~e-------~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAH 382 (1172)
T KOG0926|consen 342 FDGTI-GE-------DTSIKFMTDGVLLREIENDFLLTKYSVIILDEAH 382 (1172)
T ss_pred ecccc-CC-------CceeEEecchHHHHHHHHhHhhhhceeEEechhh
Confidence 43332 11 1122222 222 25667889999999993
No 386
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.42 E-value=0.44 Score=37.87 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHH
Q psy1539 52 MDILCQAKSGMGKTAV 67 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~ 67 (175)
.++++.|+|+.|||..
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 6999999999999973
No 387
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.39 E-value=1.1 Score=37.30 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.||+|+|||...
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999654
No 388
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.38 E-value=0.33 Score=37.08 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
+..+++.||+|+|||-. +..+.+.+.. .+.++.++.-
T Consensus 45 ~~~l~l~Gp~G~GKThL-l~a~~~~~~~--~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL-LHAACAELSQ--RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHh--CCCeEEEEEH
Confidence 46899999999999953 2344444433 2445666543
No 389
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=92.38 E-value=0.33 Score=41.80 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCChHHH
Q psy1539 49 VLGMDILCQAKSGMGKTA 66 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~ 66 (175)
..|+-+.+.+++|+|||.
T Consensus 356 ~~G~~v~IvG~sGsGKST 373 (571)
T TIGR02203 356 EPGETVALVGRSGSGKST 373 (571)
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 358899999999999996
No 390
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.34 E-value=0.2 Score=38.00 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=22.9
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC
Q psy1539 48 AVLGMDILCQAKSGMGKTAVFVLATLQQLETT 79 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~ 79 (175)
+..|.-+.+++|+|||||. ++-.++.+..-
T Consensus 25 v~~Gevv~iiGpSGSGKST--lLRclN~LE~~ 54 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKST--LLRCLNGLEEP 54 (240)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHHCCcCC
Confidence 3467889999999999996 55666666543
No 391
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.34 E-value=0.097 Score=35.59 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=12.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
+++.+++.|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3567899999999999654
No 392
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.26 E-value=0.2 Score=37.58 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=17.1
Q ss_pred HHhHHHHh-cCCcEEEEcCCCChHHHHH
Q psy1539 42 HECIPQAV-LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 42 ~~~i~~~~-~g~~~ii~a~TGsGKT~~~ 68 (175)
++|+.... .++++++.+|.|+|||+..
T Consensus 12 KrAL~iAAaG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 12 KRALEIAAAGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHHHHHHHCC--EEEES-CCCTHHHHH
T ss_pred HHHHHHHHcCCCCeEEECCCCCCHHHHH
Confidence 44444333 5699999999999999754
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.25 E-value=2.6 Score=33.90 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.-+.+.+|+|+|||...
T Consensus 114 ~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345788999999999754
No 394
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.24 E-value=0.76 Score=39.94 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=48.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCc-hHHhHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP-IQKDEEYL 130 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~-~~~~~~~l 130 (175)
+-++++||.|+|||.+... +...+.... +. +.+-|.+ ...|+.+.... ...+..+.|... .-++++.+
T Consensus 39 hayLf~Gp~G~GKtt~A~~-lak~l~c~~-~~-------~~~~c~~-c~~c~~i~~g~-~~d~~eid~~s~~~v~~ir~l 107 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARI-LAKALNCEQ-GL-------TAEPCNV-CPPCVEITEGR-SVDVFEIDGASNTGVDDIREL 107 (576)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHhhcCCC-CC-------CCCCCCc-cHHHHHHhcCC-CCCeeeeeccCccCHHHHHHH
Confidence 3468999999999976543 333333211 10 0000111 12233443332 333444444321 12334444
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il 170 (175)
.... ...-...+.+.+|+||+|+.-....+.++
T Consensus 108 ~~~~-------~~~p~~~~~KVvIIdev~~Lt~~a~naLL 140 (576)
T PRK14965 108 RENV-------KYLPSRSRYKIFIIDEVHMLSTNAFNALL 140 (576)
T ss_pred HHHH-------HhccccCCceEEEEEChhhCCHHHHHHHH
Confidence 3221 11112357899999999866555554444
No 395
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.22 E-value=2 Score=37.82 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=52.6
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
..++||.|+|+.-+.++.+.+... ++.+..++|+.+..+.. +.++++ .+++|+ +....++++++.++|.
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~ 319 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE
Confidence 347999999999999887777643 67888899998755443 334443 567777 6666888999999876
Q ss_pred eCC
Q psy1539 156 DVR 158 (175)
Q Consensus 156 DEa 158 (175)
-+.
T Consensus 320 ~d~ 322 (629)
T PRK11634 320 YDI 322 (629)
T ss_pred eCC
Confidence 444
No 396
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.20 E-value=1.1 Score=38.36 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+-++||.+-|+-.|+++.+-+ ... |+++..++++.+.-+.. +.|+.| .+++|| |++..+++..+.++.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl----~e~-gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA 519 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYL----KEL-GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA 519 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHH----Hhc-CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE
Confidence 4468999999999988755544 444 99999999998755444 445555 588888 888899999999998
Q ss_pred EeCCC-CCCHHHHHHHH
Q psy1539 155 MDVRS-GGWWLDLEALI 170 (175)
Q Consensus 155 lDEad-~~f~~~v~~il 170 (175)
+=+|| .||...-++++
T Consensus 520 IlDADKeGFLRse~SLI 536 (663)
T COG0556 520 ILDADKEGFLRSERSLI 536 (663)
T ss_pred EeecCccccccccchHH
Confidence 88886 58876655554
No 397
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.16 E-value=0.89 Score=39.24 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHH
Q psy1539 53 DILCQAKSGMGKTAVFV 69 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~ 69 (175)
.++++||.|+|||....
T Consensus 40 a~Lf~Gp~GvGKTTlAr 56 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGR 56 (546)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996543
No 398
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.16 E-value=0.34 Score=41.13 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=34.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
|.-+++.+|+|+|||...+.-+.+.+. ++-+++|++ .-|-..|+...++.+.
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACA---NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 478999999999999755443333332 344677776 5555667777776664
No 399
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.13 E-value=0.51 Score=39.59 Aligned_cols=45 Identities=11% Similarity=0.232 Sum_probs=29.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
..+++.||+|+|||.. +.++.+.+.....+.+++++.. .++..+.
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~~~~~~v~yi~~-~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQNEPDLRVMYITS-EKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 4699999999999953 4555565554333456777654 3444443
No 400
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.08 E-value=0.56 Score=38.79 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+.+++.+|.|+|||...
T Consensus 37 ha~Lf~Gp~G~GKt~lA 53 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAA 53 (394)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 56899999999999654
No 401
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.05 E-value=0.41 Score=39.08 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=22.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhc
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLET 78 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~ 78 (175)
.|+.+++.+|+||||| |..+.+.+.+..
T Consensus 64 aGrgiLi~GppgTGKT-AlA~gIa~eLG~ 91 (450)
T COG1224 64 AGRGILIVGPPGTGKT-ALAMGIARELGE 91 (450)
T ss_pred cccEEEEECCCCCcHH-HHHHHHHHHhCC
Confidence 4689999999999999 455667666653
No 402
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=92.03 E-value=1.2 Score=38.24 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=52.8
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
.+++||.++++.-+..+.+.+... . ++++..++|+.+..+..+ .+++| .+++|+ +....+++.+++++|.
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~---~-g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~ 442 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV---T-GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII 442 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc---c-CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE
Confidence 357999999999888776655532 2 778889999987654443 34443 577887 6666888889988887
Q ss_pred eCC
Q psy1539 156 DVR 158 (175)
Q Consensus 156 DEa 158 (175)
=+.
T Consensus 443 ~d~ 445 (518)
T PLN00206 443 FDM 445 (518)
T ss_pred eCC
Confidence 655
No 403
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.02 E-value=0.32 Score=41.29 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=34.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.|+.++|.+++|+|||+..+.-+.+.+.. .+-++++++- .|-..++.+.+..+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~-eE~~~~l~~~~~~~G 73 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTF-EESPQDIIKNARSFG 73 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEE-ecCHHHHHHHHHHcC
Confidence 46889999999999997655444443332 1335777764 355556666665553
No 404
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.00 E-value=0.078 Score=39.81 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=32.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCe-----EEEEEecCHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-----YVLVMCHTRELAFQ 97 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~-----~~lil~Pt~~L~~q 97 (175)
.|+=.-+.+|+|.||+. ++.+..++.+...|. +-+-=+|+.+||..
T Consensus 26 ~g~iTs~IGPNGAGKST--LLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~ 76 (252)
T COG4604 26 KGGITSIIGPNGAGKST--LLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK 76 (252)
T ss_pred CCceeEEECCCCccHHH--HHHHHHHhccccCceEEEeeeecccCChHHHHHH
Confidence 46666788999999987 677788887654431 22344588999865
No 405
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.98 E-value=0.27 Score=37.30 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=25.7
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 49 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
..|.-+++.|++|+|||...+--+.+.... .+..+++++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK--QGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCceEEEe
Confidence 356789999999999996544333333332 144678877
No 406
>KOG1564|consensus
Probab=91.97 E-value=0.48 Score=37.41 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=24.8
Q ss_pred EEcCCCChHHHH-HHHHHHHhhhcC--CCCeEEEEEe-----cCHHH
Q psy1539 56 CQAKSGMGKTAV-FVLATLQQLETT--DSNVYVLVMC-----HTREL 94 (175)
Q Consensus 56 i~a~TGsGKT~~-~~~~~l~~l~~~--~~~~~~lil~-----Pt~~L 94 (175)
+++..|+|||-. .-+.++-.+-.. .-+..++||+ |+|-|
T Consensus 107 i~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL 153 (351)
T KOG1564|consen 107 ICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRL 153 (351)
T ss_pred HhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHH
Confidence 678999999943 334555444332 2234689998 66665
No 407
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.93 E-value=2.2 Score=35.74 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=39.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHH----h
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQK----D 126 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~----~ 126 (175)
-+++++++|+|||.+..--+. .+... .+.+++++. +.|.-+.+ +++.+.... ++.+.....+.+..+ .
T Consensus 101 vi~~vG~~GsGKTTtaakLA~-~l~~~-~g~kV~lV~~D~~R~~a~~---QL~~~a~~~-gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAY-YLKKK-QGKKVLLVACDLYRPAAIE---QLKVLGQQV-GVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHHh-CCCeEEEEeccccchHHHH---HHHHHHHhc-CCceEecCCCCCHHHHHHHH
Confidence 478999999999976533222 22211 233555554 33444322 344454444 555444333233211 1
Q ss_pred HHH-HhcCCCeEEE
Q psy1539 127 EEY-LKTHNPQIVG 139 (175)
Q Consensus 127 ~~~-l~~~~~iiv~ 139 (175)
.+. ..++.++||.
T Consensus 175 l~~~~~~~~DvVII 188 (428)
T TIGR00959 175 LEYAKENGFDVVIV 188 (428)
T ss_pred HHHHHhcCCCEEEE
Confidence 222 2345676665
No 408
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.89 E-value=0.87 Score=39.72 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~ 69 (175)
+.++++||.|+|||..+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468899999999996543
No 409
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=1.2 Score=39.08 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~ 69 (175)
..+++.||.|+|||....
T Consensus 39 ~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred ceEEEECCCCCChHHHHH
Confidence 567999999999996543
No 410
>PTZ00301 uridine kinase; Provisional
Probab=91.88 E-value=0.33 Score=36.56 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=14.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhh
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+-|.|++|||||... -.+.+.+
T Consensus 6 IgIaG~SgSGKTTla-~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLS-TNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHH-HHHHHHH
Confidence 568899999999643 3333333
No 411
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.86 E-value=0.13 Score=34.69 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.8
Q ss_pred EEEEcCCCChHHHHH
Q psy1539 54 ILCQAKSGMGKTAVF 68 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~ 68 (175)
+++.|++|||||...
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999754
No 412
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=91.85 E-value=0.4 Score=40.31 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=34.2
Q ss_pred ccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc
Q psy1539 13 VKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET 78 (175)
Q Consensus 13 ~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~ 78 (175)
..++++.+|++.+.+.|.+ ..+.+++.+|+|+||| +|..++...+..
T Consensus 243 k~~ledY~L~dkl~eRL~e------------------raeGILIAG~PGaGKs-TFaqAlAefy~~ 289 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEE------------------RAEGILIAGAPGAGKS-TFAQALAEFYAS 289 (604)
T ss_pred EechhhcCCCHHHHHHHHh------------------hhcceEEecCCCCChh-HHHHHHHHHHHh
Confidence 3446777777777777654 2478999999999999 566777666543
No 413
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=0.17 Score=42.50 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=19.9
Q ss_pred HHhHHHHh-cCCcEEEEcCCCChHHHHH
Q psy1539 42 HECIPQAV-LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 42 ~~~i~~~~-~g~~~ii~a~TGsGKT~~~ 68 (175)
++|+.... .|+|+++.+|+|||||+..
T Consensus 188 KrAleiAAAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 188 KRALEIAAAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHHhcCCcEEEecCCCCchHHhh
Confidence 34444333 4699999999999999743
No 414
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.77 E-value=0.31 Score=36.77 Aligned_cols=26 Identities=23% Similarity=0.283 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
++.+.|.|.||||||... --++..+.
T Consensus 23 ~~H~~I~G~TGsGKS~~~-~~ll~~l~ 48 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV-KVLLEELL 48 (229)
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 478899999999999654 33444443
No 415
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=91.74 E-value=0.14 Score=37.74 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~ 70 (175)
...+++.+|.|||||..|..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~ 22 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQ 22 (181)
T ss_dssp --EEEEE-STTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 46799999999999976654
No 416
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=91.68 E-value=4.2 Score=33.08 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=50.2
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--eecCccCCCCceEEEEe
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--LVNYETNLSGVVVNVMD 156 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--l~~~~~~~~~~~~lVlD 156 (175)
.+.++||+++|+.-++.+++.+++.. . +..+..++|..+..+..+.. ..+++|+ +....++++.. .+|.|
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~--~-~~~~~~l~g~~~~~~R~~~~--~~~iLVaTdv~~rGiDi~~~-~vi~~ 342 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG--L-GDDIGRITGFAPKKDRERAM--QFDILLGTSTVDVGVDFKRD-WLIFS 342 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC--C-CceEEeeecCCCHHHHHHhc--cCCEEEEecHHhcccCCCCc-eEEEC
Confidence 45589999999999999888887642 1 45677788887755443333 3578888 66678888776 56665
No 417
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.65 E-value=0.4 Score=37.76 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.++++.+|+|+|||..+
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999765
No 418
>KOG1806|consensus
Probab=91.65 E-value=0.39 Score=43.90 Aligned_cols=71 Identities=23% Similarity=0.176 Sum_probs=52.7
Q ss_pred CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
+-..||-|.++|..-.+--++.+.+|+|+|||-... -++..+......++++|++.+..--+|.++.+.+.
T Consensus 736 ~v~ft~~qveai~sg~qpgltmvvgppgtgktd~av-qil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 736 QVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAV-QILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred hhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhh-hhhhhhhhcCCCcceEEEEecccchhHHHHHHHhc
Confidence 445689999998877777899999999999996653 33444444445678999999887777777665443
No 419
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=91.60 E-value=0.26 Score=41.42 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=24.4
Q ss_pred cHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 38 TSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
-......+..+..++++++.+|+|+|||..+
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 3444555667778999999999999999655
No 420
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.59 E-value=0.13 Score=35.52 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
++++.+|+|+|||...
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5899999999999643
No 421
>PLN03130 ABC transporter C family member; Provisional
Probab=91.54 E-value=0.46 Score=46.15 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhc
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLET 78 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~ 78 (175)
.|+-+-++++||||||. ++-++.++..
T Consensus 1264 ~GekVaIVGrSGSGKST--Ll~lL~rl~~ 1290 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSS--MLNALFRIVE 1290 (1622)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCcCC
Confidence 57889999999999996 3444555543
No 422
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=91.54 E-value=2.3 Score=38.67 Aligned_cols=70 Identities=11% Similarity=0.248 Sum_probs=53.4
Q ss_pred eEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhc---C-CCeEEE--eecCccCCCCceEEE
Q psy1539 83 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT---H-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~---~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
..+||.+|+++-+..+.+.+++... +++.+..++|+.+..++.+.+.. | ..+||+ +....+.+.++++||
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEE
Confidence 4799999999999888887775332 37889999999998777777653 2 357777 666688888988665
No 423
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.49 E-value=4.4 Score=33.19 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=17.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+-.++.+|.|+||+... ..+...+.
T Consensus 42 HA~Lf~Gp~G~GK~~lA-~~~A~~Ll 66 (365)
T PRK07471 42 HAWLIGGPQGIGKATLA-YRMARFLL 66 (365)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHh
Confidence 36899999999999543 34444443
No 424
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=91.47 E-value=0.68 Score=40.64 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=38.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH--HHHHHHHHHHHHHHh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR--ELAFQISKEYERFSK 107 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~ 107 (175)
.+.+|.++||+|||..+.+-+.+.+.. +..++++=|-. ++...++..++++.+
T Consensus 181 gHtlV~GtTGsGKT~l~~~li~q~i~~---g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 181 GHTLVLGTTRVGKTRLAELLITQDIRR---GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 578999999999998877666665543 34677777865 567777777777665
No 425
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.47 E-value=0.15 Score=34.41 Aligned_cols=14 Identities=43% Similarity=0.683 Sum_probs=12.2
Q ss_pred EEEEcCCCChHHHH
Q psy1539 54 ILCQAKSGMGKTAV 67 (175)
Q Consensus 54 ~ii~a~TGsGKT~~ 67 (175)
+++.+|+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999964
No 426
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.45 E-value=0.52 Score=35.50 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=30.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
.|.-+++.+++|+|||...+--+...+. ++-.++++... +-..|+.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~---~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK---NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 3578899999999999654333333333 23356666543 3445555555444
No 427
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=91.43 E-value=0.16 Score=44.68 Aligned_cols=44 Identities=23% Similarity=0.136 Sum_probs=33.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 100 (175)
.++++.||||||||..+++|-+-.+. .-++|.=|--|+......
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~-----~S~VV~D~KGEl~~~Ta~ 188 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWP-----GSAIVHDIKGENWQLTAG 188 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCC-----CCEEEEeCcchHHHHHHH
Confidence 68999999999999999999876542 136666677777655443
No 428
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=91.42 E-value=0.19 Score=44.07 Aligned_cols=44 Identities=20% Similarity=0.115 Sum_probs=33.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 100 (175)
.++++.||||||||..+++|-+-.. +..++|+=|--|+......
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-----~~S~VV~D~KGE~~~~Tag 219 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-----GHSSVITDLKGELWALTAG 219 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-----CCCEEEEeCcHHHHHHHHH
Confidence 6799999999999999999887643 1247777788888654433
No 429
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=91.41 E-value=2.5 Score=36.81 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=52.4
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
+.++||.|+|+..+.++.+.+... ++.+..++|+.+..+..+ .+.+ ..+++|+ .....++.++++++|.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~-----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~ 298 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ-----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH 298 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE
Confidence 457899999999999988776542 788899999987554433 2333 4577777 5555888999998886
Q ss_pred eCC
Q psy1539 156 DVR 158 (175)
Q Consensus 156 DEa 158 (175)
=..
T Consensus 299 ~~~ 301 (591)
T TIGR01389 299 YDM 301 (591)
T ss_pred cCC
Confidence 544
No 430
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.40 E-value=1 Score=36.34 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=23.8
Q ss_pred CcHHHHHhHHHHh----cC---CcEEEEcCCCChHHHHH
Q psy1539 37 QTSFQHECIPQAV----LG---MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 37 ~t~~Q~~~i~~~~----~g---~~~ii~a~TGsGKT~~~ 68 (175)
.+|+|...|..+. +| +-.++.||.|.||+..+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA 41 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH
Confidence 4677777776654 33 47889999999999543
No 431
>KOG0745|consensus
Probab=91.37 E-value=0.13 Score=42.82 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHH
Q psy1539 51 GMDILCQAKSGMGKTAV 67 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~ 67 (175)
..|+++.+|||||||+.
T Consensus 226 KSNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLL 242 (564)
T ss_pred cccEEEECCCCCchhHH
Confidence 35899999999999974
No 432
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=91.30 E-value=3.6 Score=36.36 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=56.7
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.+++|.|+|+.-+..+.+.+.. . ++++..++|+.+..+.. +.+++| ..++|+ .....+++.+++++|
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~----~-gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVi 519 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKE----L-GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVA 519 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhh----c-ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEE
Confidence 566899999999988886666654 3 78888888887644333 334443 456655 667789999999998
Q ss_pred EeCCC-CCCHHHH
Q psy1539 155 MDVRS-GGWWLDL 166 (175)
Q Consensus 155 lDEad-~~f~~~v 166 (175)
+=|++ .||..+.
T Consensus 520 i~d~eifG~~~~~ 532 (652)
T PRK05298 520 ILDADKEGFLRSE 532 (652)
T ss_pred EeCCcccccCCCH
Confidence 87774 4554333
No 433
>PRK06893 DNA replication initiation factor; Validated
Probab=91.29 E-value=0.32 Score=36.99 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=22.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
..+++.||+|+|||- .+.++.+.+... +..+.++..
T Consensus 40 ~~l~l~G~~G~GKTh-L~~ai~~~~~~~--~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSH-LLKAVSNHYLLN--QRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHHc--CCCeEEeeH
Confidence 457999999999994 344455544432 335666544
No 434
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.19 E-value=0.41 Score=37.15 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=29.9
Q ss_pred HhHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHhhhc---CCCCeEEEEEecCH
Q psy1539 43 ECIPQAVLG-----MDILCQAKSGMGKTAVFVLATLQQLET---TDSNVYVLVMCHTR 92 (175)
Q Consensus 43 ~~i~~~~~g-----~~~ii~a~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~Pt~ 92 (175)
..+..++.| .=.=++++.|+|||-..+--.+....+ ...+.+++||--..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG 82 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC
Confidence 356666654 345589999999995544333333222 12345799997544
No 435
>PRK10867 signal recognition particle protein; Provisional
Probab=91.18 E-value=3.6 Score=34.54 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=31.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEEE
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGV 116 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~~ 116 (175)
-+++++++|+|||.+..--+ .++.. ..+.+++++. +.|.-+. ++++.+.+.. ++.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA-~~l~~-~~G~kV~lV~~D~~R~aa~---eQL~~~a~~~-gv~v~~ 161 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA-KYLKK-KKKKKVLLVAADVYRPAAI---EQLKTLGEQI-GVPVFP 161 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH-HHHHH-hcCCcEEEEEccccchHHH---HHHHHHHhhc-CCeEEe
Confidence 47889999999997643322 22322 1244555555 3454443 2344555554 665543
No 436
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=91.18 E-value=3.1 Score=27.69 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=51.6
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHh---HHHHhcCC-CeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTHN-PQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~---~~~l~~~~-~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.+.|+.++++.-+.++.+.+++ ++..+..++|+.+..+. ...+.++. .++++ .....+++...+.+|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi 101 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVI 101 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEE
Confidence 345799999999998888877776 26778888888764332 23444544 34554 334477888899888
Q ss_pred EeCCCC
Q psy1539 155 MDVRSG 160 (175)
Q Consensus 155 lDEad~ 160 (175)
+.+...
T Consensus 102 ~~~~~~ 107 (131)
T cd00079 102 NYDLPW 107 (131)
T ss_pred EeCCCC
Confidence 887743
No 437
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.13 E-value=0.17 Score=35.02 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=12.3
Q ss_pred EEEEcCCCChHHHH
Q psy1539 54 ILCQAKSGMGKTAV 67 (175)
Q Consensus 54 ~ii~a~TGsGKT~~ 67 (175)
++++|++|||||..
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999964
No 438
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=91.09 E-value=0.32 Score=42.78 Aligned_cols=47 Identities=26% Similarity=0.162 Sum_probs=34.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
.++++.||||+|||..+++|-+-.+ .+ -++++=|..|+...+....+
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~----~g-S~VV~DpKgEl~~~Ta~~R~ 271 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW----GG-PLVVLDPSTEVAPMVSEHRR 271 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC----CC-CEEEEeCcHHHHHHHHHHHH
Confidence 6889999999999999999976432 11 36666688888766555443
No 439
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.05 E-value=1.2 Score=32.38 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=30.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
++|.+++|||||....- .+.. .+.+++++...+..-....+.+.+.
T Consensus 2 ~li~G~~~sGKS~~a~~-~~~~-----~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAER-LAAE-----LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHH-HHHh-----cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 57899999999954432 2222 2347888888777766666655543
No 440
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=91.04 E-value=0.27 Score=43.54 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHHHhhCCCCCCcHHHHHhHH--HHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHH
Q psy1539 23 EKEDRIGESQPFREQTSFQHECIP--QAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95 (175)
Q Consensus 23 ~~l~~~l~~~g~~~~t~~Q~~~i~--~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (175)
.++.+.+++.|-. +++.-.-+| .-.+.+++++.+.||||||.+. .-++..+.. ++-++||.=|+-+.+
T Consensus 157 ~~l~k~lk~~~~~--s~i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~--RGdrAIIyD~~GeFv 226 (732)
T PRK13700 157 KDVARMLKKDGKD--SDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQ--RGDMVVIYDRSGEFV 226 (732)
T ss_pred HHHHHHHHhcCCC--CCeeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHH--cCCeEEEEeCCCchH
Confidence 4555667766533 333333333 3445699999999999999754 555555433 222444444444443
No 441
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=91.03 E-value=1.2 Score=35.72 Aligned_cols=54 Identities=17% Similarity=-0.004 Sum_probs=30.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhc---CCCCeEEEEEecCHHH-HHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLET---TDSNVYVLVMCHTREL-AFQISKEYERF 105 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~Pt~~L-~~q~~~~~~~~ 105 (175)
.-+.+.+++|+|||...+..++....+ ...+.+++|+.-...+ ..++.+..+.+
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 456799999999996554333332221 1224478888754332 34444444443
No 442
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.81 E-value=1.1 Score=36.37 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=18.4
Q ss_pred ccccccccCCCCHHHHHHHhhCCCC
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFR 35 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~ 35 (175)
.+...+...|+++...+.|++.||.
T Consensus 29 ~~~~~l~~~g~~~~~~~kL~~~g~~ 53 (344)
T PLN03187 29 ESIDKLISQGINAGDVKKLQDAGIY 53 (344)
T ss_pred cCHHHHhhCCCCHHHHHHHHHcCCC
Confidence 3455566678888888888888875
No 443
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=90.79 E-value=0.48 Score=35.70 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHH
Q psy1539 51 GMDILCQAKSGMGKTAV 67 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~ 67 (175)
+..+++.+++|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999953
No 444
>KOG2340|consensus
Probab=90.75 E-value=1.6 Score=37.43 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=53.9
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCC-CChH--HHHHHHHHHHhhhcC----------------------------CCCe
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKS-GMGK--TAVFVLATLQQLETT----------------------------DSNV 83 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~T-GsGK--T~~~~~~~l~~l~~~----------------------------~~~~ 83 (175)
..+|+.|.+.+....+-+|++.-..| +.|+ +-.|++-+++++.+. -..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 36799999999888888998754433 2454 345777777776311 1248
Q ss_pred EEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 84 YVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
++||+||+|+-|-.+.+.+..++.
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~ 318 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLS 318 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhc
Confidence 999999999999999888887743
No 445
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.73 E-value=0.66 Score=37.49 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=17.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
.++++.||+|+|||... -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 68999999999999653 4444444
No 446
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=90.69 E-value=0.49 Score=35.85 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=14.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhh
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+-+.+++|||||... -.+...+
T Consensus 2 igI~G~sGSGKTTla-~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTA-RVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHH-HHHHHHH
Confidence 357899999999654 3333333
No 447
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.67 E-value=1 Score=34.09 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
|.-+++.+++|+|||.....-+...+. ++.+++++.-... ..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 578899999999999654433333333 3446777765433 34555555554
No 448
>PRK09694 helicase Cas3; Provisional
Probab=90.65 E-value=1.8 Score=39.53 Aligned_cols=75 Identities=12% Similarity=0.265 Sum_probs=51.3
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHh-------HHHH-hcCC----CeEEE--eecCccC
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD-------EEYL-KTHN----PQIVG--LVNYETN 146 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~-------~~~l-~~~~----~iiv~--l~~~~~~ 146 (175)
++.+++|+++|++-++++++.+++... ++..+.+++|.....+. .+.+ +++. .++|+ ++...++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLD 636 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLD 636 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheee
Confidence 455899999999999999998886431 24678899998664333 2223 3332 47777 5666666
Q ss_pred CCCceEEEEeCC
Q psy1539 147 LSGVVVNVMDVR 158 (175)
Q Consensus 147 ~~~~~~lVlDEa 158 (175)
+ +++++|-|-+
T Consensus 637 I-d~DvlItdla 647 (878)
T PRK09694 637 L-DFDWLITQLC 647 (878)
T ss_pred c-CCCeEEECCC
Confidence 6 4678888765
No 449
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.64 E-value=0.25 Score=38.79 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=15.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHh
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQ 75 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~ 75 (175)
=+++.++|||||+... .+++.+
T Consensus 129 LviiVGaTGSGKSTtm-AaMi~y 150 (375)
T COG5008 129 LVIIVGATGSGKSTTM-AAMIGY 150 (375)
T ss_pred eEEEECCCCCCchhhH-HHHhcc
Confidence 3688999999999653 444444
No 450
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=90.63 E-value=2.7 Score=38.12 Aligned_cols=70 Identities=9% Similarity=0.190 Sum_probs=53.4
Q ss_pred eEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhc---C-CCeEEE--eecCccCCCCceEEE
Q psy1539 83 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT---H-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~---~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
..+||.+|++.-++++.+.+++... .++.+..++|+.+..++.+.+.. | ..+||+ +....+.+.++++||
T Consensus 213 g~iLVFlpg~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 213 GSLLLFLPGVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEE
Confidence 4799999999999998888875321 27889999999998777766653 2 356777 666688889999666
No 451
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.58 E-value=0.21 Score=36.59 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
|..+++.+|+|+|||...
T Consensus 2 g~~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLL 19 (186)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567899999999999753
No 452
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=90.53 E-value=0.26 Score=43.12 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=35.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
.++++.||||||||..+++|-+-.+. + -++++=|.-|+.......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~----g-S~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYG----G-PLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCC----C-CEEEEEChHHHHHHHHHHHHHc
Confidence 68999999999999999999754321 1 3677778888876655433333
No 453
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=90.52 E-value=0.17 Score=44.75 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhc
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLET 78 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~ 78 (175)
.|+.+.+.+++|||||. ++-++..+..
T Consensus 490 ~G~~iaIvG~sGsGKST--LlklL~gl~~ 516 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKST--LLKLLLGLYQ 516 (694)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 58899999999999996 3344444443
No 454
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=90.51 E-value=0.39 Score=41.63 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+.+++++.|+||||||. ++..++..+
T Consensus 175 e~~h~li~G~tGsGKs~-~i~~ll~~~ 200 (566)
T TIGR02759 175 ETQHILIHGTTGSGKSV-AIRKLLRWI 200 (566)
T ss_pred cccceEEEcCCCCCHHH-HHHHHHHHH
Confidence 45799999999999995 344455554
No 455
>KOG0060|consensus
Probab=90.50 E-value=0.32 Score=41.89 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=17.5
Q ss_pred HHhcCCcEEEEcCCCChHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTA 66 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~ 66 (175)
.+.+|++++|++|+|+|||-
T Consensus 457 ~V~~g~~LLItG~sG~GKtS 476 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTS 476 (659)
T ss_pred EecCCCeEEEECCCCCchhH
Confidence 34579999999999999995
No 456
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.47 E-value=2.1 Score=34.73 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=23.7
Q ss_pred cHHHHHhHHHHhc--C---CcEEEEcCCCChHHHHH
Q psy1539 38 TSFQHECIPQAVL--G---MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 38 t~~Q~~~i~~~~~--g---~~~ii~a~TGsGKT~~~ 68 (175)
+|+|...|..+.. | +-+++.+|.|.||+..+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA 38 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA 38 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH
Confidence 6777777776653 3 57889999999999654
No 457
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.36 E-value=1.4 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~ 70 (175)
.-+++.+|+|+|||....-
T Consensus 224 ~vi~lvGptGvGKTTtaaK 242 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAK 242 (432)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999976543
No 458
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.35 E-value=2.4 Score=36.46 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=54.2
Q ss_pred CCcHHHHHhHHHHhc------C----CcEEEEcCCCChHHHHHH-HHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVL------G----MDILCQAKSGMGKTAVFV-LATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 104 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~------g----~~~ii~a~TGsGKT~~~~-~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (175)
.+-|+|+-.+-.++. | +-.+|.-|-+.|||.... +.....+.....+.+..|++|+.+-+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 568899999877762 2 457888999999996543 33333333335666889999999999999998888
Q ss_pred HHhhC
Q psy1539 105 FSKYM 109 (175)
Q Consensus 105 ~~~~~ 109 (175)
.....
T Consensus 141 mv~~~ 145 (546)
T COG4626 141 MVKRD 145 (546)
T ss_pred HHHhC
Confidence 77665
No 459
>PRK13531 regulatory ATPase RavA; Provisional
Probab=90.34 E-value=0.64 Score=39.50 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=21.6
Q ss_pred HHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 42 HECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 42 ~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
..++-.++.|.++++.+|+|+|||...
T Consensus 30 ~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 30 RLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHccCCCEEEECCCChhHHHHH
Confidence 334456678999999999999999754
No 460
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.23 E-value=1.2 Score=36.99 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
..-+++.||+|+|||- .+.++.+.........+++++....
T Consensus 113 ~nplfi~G~~GlGKTH-Ll~Aign~~~~~~~~a~v~y~~se~ 153 (408)
T COG0593 113 YNPLFIYGGVGLGKTH-LLQAIGNEALANGPNARVVYLTSED 153 (408)
T ss_pred CCcEEEECCCCCCHHH-HHHHHHHHHHhhCCCceEEeccHHH
Confidence 3679999999999994 4556666665545555777777643
No 461
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=90.20 E-value=0.22 Score=39.68 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=13.8
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+=++|.+|||||||-..
T Consensus 5 ~ii~I~GpTasGKS~LA 21 (300)
T PRK14729 5 KIVFIFGPTAVGKSNIL 21 (300)
T ss_pred cEEEEECCCccCHHHHH
Confidence 45889999999999543
No 462
>PHA02244 ATPase-like protein
Probab=90.19 E-value=0.44 Score=39.08 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=18.1
Q ss_pred HHHhcCCcEEEEcCCCChHHHH
Q psy1539 46 PQAVLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 46 ~~~~~g~~~ii~a~TGsGKT~~ 67 (175)
..+..+.++++.+|||+|||..
T Consensus 114 r~l~~~~PVLL~GppGtGKTtL 135 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHI 135 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHH
Confidence 3445689999999999999954
No 463
>CHL00181 cbbX CbbX; Provisional
Probab=90.18 E-value=0.85 Score=36.03 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~ 69 (175)
|.++++.+|+|+|||..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999997654
No 464
>PHA00729 NTP-binding motif containing protein
Probab=90.17 E-value=1 Score=34.34 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=14.0
Q ss_pred CcEEEEcCCCChHHHH
Q psy1539 52 MDILCQAKSGMGKTAV 67 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~ 67 (175)
.++++.|++|+|||..
T Consensus 18 ~nIlItG~pGvGKT~L 33 (226)
T PHA00729 18 VSAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4899999999999953
No 465
>PLN03232 ABC transporter C family member; Provisional
Probab=90.05 E-value=0.56 Score=45.26 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=19.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhc
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLET 78 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~ 78 (175)
.|+.+-++++||||||. ++-++.++..
T Consensus 1261 ~GekvaIVG~SGSGKST--L~~lL~rl~~ 1287 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSS--MLNALFRIVE 1287 (1495)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCCCc
Confidence 57889999999999996 3344444443
No 466
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.95 E-value=5.2 Score=35.07 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=67.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh-CCCeEEEEEECCC-chHHhHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY-MSNIKVGVFFGGL-PIQKDEEY 129 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~i~v~~~~g~~-~~~~~~~~ 129 (175)
+-.+.--|---|||| |+.|++..+...-.+.++.|++.-|.-++-+++++..-+.+ +|.-.+...-++. ..+.. .
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s~p--g 279 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISIDHR--G 279 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEecC--C
Confidence 344555688999995 68888888887778899999999998888877776543332 3322221111110 00000 0
Q ss_pred HhcCCCeEEE--eecCccCCCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 130 LKTHNPQIVG--LVNYETNLSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 130 l~~~~~iiv~--l~~~~~~~~~~~~lVlDEad~~f~~~v~~il 170 (175)
. + ...+.+ -..+.+.=++..++++|||...-.+-+..||
T Consensus 280 ~-K-st~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~a~~til 320 (668)
T PHA03372 280 A-K-STALFASCYNTNSIRGQNFHLLLVDEAHFIKKDAFNTIL 320 (668)
T ss_pred C-c-ceeeehhhccCccccCCCCCEEEEehhhccCHHHHHHhh
Confidence 0 0 011112 1111445568999999999766556555554
No 467
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.90 E-value=2.2 Score=34.29 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=23.7
Q ss_pred CcHHHHHhHHHHh----cC---CcEEEEcCCCChHHHHH
Q psy1539 37 QTSFQHECIPQAV----LG---MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 37 ~t~~Q~~~i~~~~----~g---~~~ii~a~TGsGKT~~~ 68 (175)
++|+|...+..+. +| +-.++.+|.|.||+..+
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA 42 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV 42 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 5677777776554 34 47999999999998543
No 468
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=89.87 E-value=1.2 Score=34.56 Aligned_cols=27 Identities=7% Similarity=-0.080 Sum_probs=20.2
Q ss_pred CCCCceEEEEeCC----CCCCHHHHHHHHhh
Q psy1539 146 NLSGVVVNVMDVR----SGGWWLDLEALILS 172 (175)
Q Consensus 146 ~~~~~~~lVlDEa----d~~f~~~v~~il~~ 172 (175)
..++-+++++||- |..-..++.++|..
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 3468889999998 76667777777654
No 469
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.81 E-value=1.1 Score=35.70 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.||+|+|||...
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 470
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=89.80 E-value=2.2 Score=29.51 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=29.6
Q ss_pred CcEE--EEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe-----cCHHHHHHHHHHHHHHH
Q psy1539 52 MDIL--CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC-----HTRELAFQISKEYERFS 106 (175)
Q Consensus 52 ~~~i--i~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~-----Pt~~L~~q~~~~~~~~~ 106 (175)
+.++ ..++||+|||.+.-+-+-+......++..+.... |....+.+-.++++++.
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 4555 7899999999776553333222222333343333 45555555455555443
No 471
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=89.72 E-value=0.24 Score=38.40 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.+|+|+|||...
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 57999999999999654
No 472
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=89.71 E-value=0.58 Score=33.78 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=33.3
Q ss_pred HHHHHHHhhCCCCC-----CcHHHHHhHHHHhcCCcEEEEcCCCChHHH
Q psy1539 23 EKEDRIGESQPFRE-----QTSFQHECIPQAVLGMDILCQAKSGMGKTA 66 (175)
Q Consensus 23 ~~l~~~l~~~g~~~-----~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~ 66 (175)
+++++..++.||+. -+....+.+...+.++-+++.+++|.||+.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSS 50 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSS 50 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHH
Confidence 35667777888762 244556667777888999999999999994
No 473
>PRK00131 aroK shikimate kinase; Reviewed
Probab=89.67 E-value=0.26 Score=35.17 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~ 68 (175)
..+..+++.+++|||||...
T Consensus 2 ~~~~~i~l~G~~GsGKstla 21 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHH
Confidence 35678999999999999754
No 474
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.66 E-value=2.6 Score=33.90 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+-.++.||.|.||+...
T Consensus 29 ha~Lf~G~~G~gk~~~a 45 (329)
T PRK08058 29 HAYLFEGAKGTGKKATA 45 (329)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35699999999998543
No 475
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.66 E-value=2.3 Score=36.20 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=16.6
Q ss_pred CCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 147 LSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 147 ~~~~~~lVlDEad~~f~~~v~~il 170 (175)
..+-+.+|+||+|+.-.+..+.++
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLL 140 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALL 140 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHH
Confidence 357789999999866555555444
No 476
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.65 E-value=0.69 Score=34.60 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
|.-+.+.+++|+|||...+.-+.+... .+.+++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~---~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG---QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE
Confidence 466899999999999654433333222 244677774
No 477
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=89.63 E-value=0.44 Score=33.29 Aligned_cols=43 Identities=30% Similarity=0.274 Sum_probs=28.9
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
..|.-+++.++.|+||| ++.-.++..+... .-+-+||-.|++.
T Consensus 20 ~~~~~i~l~G~lGaGKT-tl~~~l~~~lg~~-----~~v~SPTf~lv~~ 62 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKT-TLVQGLLQGLGIQ-----GNVTSPTFTLVNE 62 (133)
T ss_pred CCCCEEEEEcCCCCCHH-HHHHHHHHHcCCC-----CcccCCCeeeeee
Confidence 35678899999999999 4555555554321 2366788766644
No 478
>PLN02165 adenylate isopentenyltransferase
Probab=89.62 E-value=0.3 Score=39.42 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~ 69 (175)
.|+.+++.+|||||||....
T Consensus 42 ~g~iivIiGPTGSGKStLA~ 61 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSV 61 (334)
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 35789999999999996553
No 479
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=89.62 E-value=0.62 Score=42.59 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQ 74 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~ 74 (175)
..|.+|.|+||||||...-.-+.+
T Consensus 475 n~n~~I~G~TGSGKS~l~~~li~q 498 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLTNLLMQ 498 (893)
T ss_pred cccEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999765433333
No 480
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=89.56 E-value=1.2 Score=36.20 Aligned_cols=24 Identities=4% Similarity=0.001 Sum_probs=18.4
Q ss_pred cccccccCCCCHHHHHHHhhCCCC
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFR 35 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~ 35 (175)
..+.+...|+++..++.|++.||.
T Consensus 27 ~~~~l~~~gi~~~~i~kL~~~g~~ 50 (342)
T PLN03186 27 PIEQLQASGIAALDIKKLKDAGIH 50 (342)
T ss_pred cHHHHHhCCCCHHHHHHHHHcCCC
Confidence 455666778888888888888876
No 481
>KOG2228|consensus
Probab=89.54 E-value=1.9 Score=35.08 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHH
Q psy1539 51 GMDILCQAKSGMGKTAV 67 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~ 67 (175)
+..+++.+|-|||||.-
T Consensus 49 snsviiigprgsgkT~l 65 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTIL 65 (408)
T ss_pred CCceEEEccCCCCceEe
Confidence 48999999999999954
No 482
>KOG1533|consensus
Probab=89.44 E-value=0.36 Score=37.11 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=17.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.+|.+|+||||| +|...+.+.+.
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls 27 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLS 27 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHH
Confidence 478999999999 56665555443
No 483
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=89.39 E-value=0.37 Score=38.43 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhh
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
++|.+||+||||- ..+.+.+++
T Consensus 6 i~I~GPTAsGKT~-lai~LAk~~ 27 (308)
T COG0324 6 IVIAGPTASGKTA-LAIALAKRL 27 (308)
T ss_pred EEEECCCCcCHHH-HHHHHHHHc
Confidence 7899999999994 445555544
No 484
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=89.39 E-value=2.7 Score=30.52 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.0
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+.++|.+++|||||...
T Consensus 2 ~~ili~G~~~sGKS~~a 18 (170)
T PRK05800 2 MLILVTGGARSGKSRFA 18 (170)
T ss_pred CEEEEECCCCccHHHHH
Confidence 45899999999999543
No 485
>PRK14530 adenylate kinase; Provisional
Probab=89.38 E-value=0.3 Score=36.64 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.++.+++.+++|||||...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQS 20 (215)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999643
No 486
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.30 E-value=0.7 Score=39.30 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=54.6
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
.+++.+++. ...+..-|..+.-..-.|+- .|.+-.|||||...++-+.+ +..+...-+.++-+=|+.|+.+..+...
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~knPd~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSKNPDSRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcCCCCceEEEEeehHHHHHHHHHHHH
Confidence 444444443 44556677776555555655 57888999999876554443 3333344588899999999999999888
Q ss_pred HHH
Q psy1539 104 RFS 106 (175)
Q Consensus 104 ~~~ 106 (175)
+|.
T Consensus 228 ~F~ 230 (660)
T COG3972 228 EFF 230 (660)
T ss_pred HHH
Confidence 876
No 487
>PTZ00243 ABC transporter; Provisional
Probab=89.29 E-value=0.36 Score=46.67 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|+-+-|+++||||||..
T Consensus 1335 ~GekVaIVGrTGSGKSTL 1352 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTL 1352 (1560)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999963
No 488
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=89.28 E-value=0.49 Score=45.69 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.|+-+-++++||||||. ++-++.++.
T Consensus 1311 ~GekiaIVGrTGsGKST--L~~lL~rl~ 1336 (1522)
T TIGR00957 1311 GGEKVGIVGRTGAGKSS--LTLGLFRIN 1336 (1522)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCc
Confidence 57889999999999996 333444443
No 489
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=89.22 E-value=4.7 Score=31.23 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=43.9
Q ss_pred HHhcC---CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCch
Q psy1539 47 QAVLG---MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 123 (175)
Q Consensus 47 ~~~~g---~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~ 123 (175)
.+++| .|+++.++.|+|||. .+-+++..... .+.+ +|=++...|. ++.+.+..+... ..+.++++.+.+.
T Consensus 45 ~Fl~G~pannvLL~G~rGtGKSS-lVkall~~y~~--~GLR-lIev~k~~L~-~l~~l~~~l~~~--~~kFIlf~DDLsF 117 (249)
T PF05673_consen 45 QFLQGLPANNVLLWGARGTGKSS-LVKALLNEYAD--QGLR-LIEVSKEDLG-DLPELLDLLRDR--PYKFILFCDDLSF 117 (249)
T ss_pred HHHcCCCCcceEEecCCCCCHHH-HHHHHHHHHhh--cCce-EEEECHHHhc-cHHHHHHHHhcC--CCCEEEEecCCCC
Confidence 44555 799999999999984 34455555443 3444 5555655553 444545554432 4577778777665
Q ss_pred H
Q psy1539 124 Q 124 (175)
Q Consensus 124 ~ 124 (175)
.
T Consensus 118 e 118 (249)
T PF05673_consen 118 E 118 (249)
T ss_pred C
Confidence 4
No 490
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.17 E-value=5 Score=32.43 Aligned_cols=80 Identities=21% Similarity=0.185 Sum_probs=45.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec-C-HHHHHHHHHHHHHHHhhCCCeEEEEE-ECCCch----HH
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH-T-RELAFQISKEYERFSKYMSNIKVGVF-FGGLPI----QK 125 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P-t-~~L~~q~~~~~~~~~~~~~~i~v~~~-~g~~~~----~~ 125 (175)
-+++.+-+|+|||.+- .=+.+++.+ ++.++++.+- | |+=|.+ +++.+.++. ++.++.- .|+.+. +.
T Consensus 141 Vil~vGVNG~GKTTTI--aKLA~~l~~-~g~~VllaA~DTFRAaAiE---QL~~w~er~-gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 141 VILFVGVNGVGKTTTI--AKLAKYLKQ-QGKSVLLAAGDTFRAAAIE---QLEVWGERL-GVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred EEEEEecCCCchHhHH--HHHHHHHHH-CCCeEEEEecchHHHHHHH---HHHHHHHHh-CCeEEccCCCCCcHHHHHHH
Confidence 3788999999999753 333333332 3445555442 3 666644 455666665 7777653 344332 22
Q ss_pred hHHHHhcCCCeEEE
Q psy1539 126 DEEYLKTHNPQIVG 139 (175)
Q Consensus 126 ~~~~l~~~~~iiv~ 139 (175)
-.....++.+++++
T Consensus 214 i~~Akar~~Dvvli 227 (340)
T COG0552 214 IQAAKARGIDVVLI 227 (340)
T ss_pred HHHHHHcCCCEEEE
Confidence 23344566777776
No 491
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=89.16 E-value=0.96 Score=32.30 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
+.+.+++|||||.. +-.++..+.. .+.++-++-+
T Consensus 2 i~i~G~~gsGKTtl-~~~l~~~l~~--~G~~V~viK~ 35 (155)
T TIGR00176 2 LQIVGPKNSGKTTL-IERLVKALKA--RGYRVATIKH 35 (155)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHHh--cCCeEEEEec
Confidence 46789999999953 3444444432 3445555544
No 492
>KOG1015|consensus
Probab=89.09 E-value=2 Score=39.50 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=36.3
Q ss_pred CCcEEEEcCCCChHHH---HHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 51 GMDILCQAKSGMGKTA---VFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~---~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
|...|+.---|-|||+ +|+..++..-. .+-.++||++|...+ .-+...|.++...
T Consensus 696 GsGcILAHcMGLGKTlQVvtflhTvL~c~k--lg~ktaLvV~PlNt~-~NW~~EFekWm~~ 753 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVTFLHTVLLCDK--LGFKTALVVCPLNTA-LNWMNEFEKWMEG 753 (1567)
T ss_pred CcchHHHHhhcccceehhhHHHHHHHHhhc--cCCceEEEEcchHHH-HHHHHHHHHhccc
Confidence 5667777778999995 34444433322 344579999998655 4567778777664
No 493
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.03 E-value=0.35 Score=35.03 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
|+-+++++++|||||...
T Consensus 2 ~~~i~l~G~~gsGKst~a 19 (175)
T cd00227 2 GRIIILNGGSSAGKSSIA 19 (175)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 677899999999999754
No 494
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=89.00 E-value=0.65 Score=32.21 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=16.9
Q ss_pred HHhcCCcEEEEcCCCChHHHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
....+..+++.+++||||+.++
T Consensus 17 ~a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 17 LAKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HHCSSS-EEEECCTTSSHHHHH
T ss_pred HhCCCCcEEEEcCCCCCHHHHH
Confidence 3345689999999999999753
No 495
>PRK08118 topology modulation protein; Reviewed
Probab=88.98 E-value=0.32 Score=35.15 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.5
Q ss_pred CcEEEEcCCCChHHHH
Q psy1539 52 MDILCQAKSGMGKTAV 67 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~ 67 (175)
+.++|.+++|||||..
T Consensus 2 ~rI~I~G~~GsGKSTl 17 (167)
T PRK08118 2 KKIILIGSGGSGKSTL 17 (167)
T ss_pred cEEEEECCCCCCHHHH
Confidence 3589999999999963
No 496
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=88.96 E-value=0.26 Score=41.36 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
..+.+++.+|+|+|||+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3578999999999999754
No 497
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=88.96 E-value=0.59 Score=34.05 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHH
Q psy1539 51 GMDILCQAKSGMGKTAV 67 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~ 67 (175)
++-++++||+|+|||..
T Consensus 2 ~r~ivl~Gpsg~GK~~l 18 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTL 18 (183)
T ss_dssp SSEEEEESSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 57789999999999964
No 498
>KOG0055|consensus
Probab=88.94 E-value=0.3 Score=45.52 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=35.9
Q ss_pred HhhCCCCCCcHHHHHhHHH----HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCC
Q psy1539 29 GESQPFREQTSFQHECIPQ----AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN 82 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~----~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~ 82 (175)
+++..|..|+.--..++.- +..|+.+-+.+|.||||+. ++.++++.+....|
T Consensus 990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKST--vI~LLeRfYdp~~G 1045 (1228)
T KOG0055|consen 990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKST--VISLLERFYDPDAG 1045 (1228)
T ss_pred EeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHH--HHHHHHHhcCCCCC
Confidence 4445566775544444432 3468999999999999997 57888888754443
No 499
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.92 E-value=1.1 Score=33.10 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChHHHH
Q psy1539 51 GMDILCQAKSGMGKTAV 67 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~ 67 (175)
++=+++++|+|+|||..
T Consensus 4 ~~~ivl~GpsG~GK~tl 20 (186)
T PRK14737 4 PKLFIISSVAGGGKSTI 20 (186)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999964
No 500
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=88.90 E-value=0.49 Score=39.52 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.1
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHH
Q psy1539 46 PQAVLGMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 46 ~~~~~g~~~ii~a~TGsGKT~~~~ 69 (175)
|.+-++.|++..+|+|+|||-.|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 556678999999999999996554
Done!