Query psy1539
Match_columns 175
No_of_seqs 206 out of 1430
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 19:46:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 1E-33 3.5E-38 215.7 18.1 166 6-172 21-203 (242)
2 2db3_A ATP-dependent RNA helic 100.0 5E-33 1.7E-37 228.2 18.6 162 10-172 52-230 (434)
3 1vec_A ATP-dependent RNA helic 100.0 2E-32 6.7E-37 203.2 18.3 158 14-171 3-172 (206)
4 2oxc_A Probable ATP-dependent 100.0 2.5E-32 8.5E-37 206.5 17.0 164 8-172 18-194 (230)
5 3iuy_A Probable ATP-dependent 100.0 2.2E-32 7.6E-37 206.2 15.8 164 7-172 12-194 (228)
6 1wrb_A DJVLGB; RNA helicase, D 100.0 2.1E-32 7E-37 209.5 15.8 159 12-171 21-200 (253)
7 3ber_A Probable ATP-dependent 100.0 4.5E-32 1.5E-36 207.8 17.0 161 11-172 40-213 (249)
8 3bor_A Human initiation factor 100.0 3.7E-32 1.3E-36 206.5 15.3 162 10-172 26-200 (237)
9 3fmo_B ATP-dependent RNA helic 100.0 2.2E-32 7.6E-37 214.8 13.9 158 12-172 90-263 (300)
10 1q0u_A Bstdead; DEAD protein, 100.0 2.5E-32 8.7E-37 204.9 13.4 160 13-172 3-177 (219)
11 1t6n_A Probable ATP-dependent 100.0 1.2E-31 4.2E-36 201.0 16.6 165 7-171 7-185 (220)
12 1qde_A EIF4A, translation init 100.0 3E-31 1E-35 199.3 15.6 161 10-172 10-182 (224)
13 2i4i_A ATP-dependent RNA helic 100.0 7.1E-31 2.4E-35 212.9 17.7 165 6-171 7-201 (417)
14 3ly5_A ATP-dependent RNA helic 100.0 4.9E-31 1.7E-35 203.4 15.7 157 15-172 53-228 (262)
15 2pl3_A Probable ATP-dependent 100.0 2E-30 6.9E-35 196.4 17.6 161 10-172 21-198 (236)
16 2gxq_A Heat resistant RNA depe 100.0 3E-30 1E-34 191.4 17.0 155 15-172 2-171 (207)
17 2j0s_A ATP-dependent RNA helic 100.0 1.1E-29 3.7E-34 205.8 18.7 160 11-171 34-205 (410)
18 3dkp_A Probable ATP-dependent 100.0 2.3E-30 7.8E-35 197.1 10.5 166 6-172 17-205 (245)
19 1s2m_A Putative ATP-dependent 100.0 2.1E-28 7.2E-33 197.5 15.8 160 10-170 17-188 (400)
20 1xti_A Probable ATP-dependent 100.0 2.1E-28 7.2E-33 196.7 15.4 158 14-171 8-179 (391)
21 3eiq_A Eukaryotic initiation f 100.0 7.3E-28 2.5E-32 194.8 17.5 161 11-172 37-210 (414)
22 1fuu_A Yeast initiation factor 100.0 4.5E-28 1.5E-32 194.7 15.8 161 9-171 16-188 (394)
23 3pey_A ATP-dependent RNA helic 100.0 2.1E-27 7E-32 190.6 15.7 156 11-171 2-172 (395)
24 3fmp_B ATP-dependent RNA helic 99.9 1E-27 3.6E-32 198.4 13.1 157 12-171 90-262 (479)
25 3fht_A ATP-dependent RNA helic 99.9 4.5E-27 1.6E-31 189.9 16.0 158 11-171 22-195 (412)
26 3sqw_A ATP-dependent RNA helic 99.9 3.7E-27 1.3E-31 199.5 15.5 161 12-172 18-202 (579)
27 1hv8_A Putative ATP-dependent 99.9 1.7E-26 5.9E-31 183.5 17.8 157 13-172 5-174 (367)
28 3i5x_A ATP-dependent RNA helic 99.9 9.2E-27 3.2E-31 196.0 16.4 151 21-171 79-252 (563)
29 2z0m_A 337AA long hypothetical 99.9 1.2E-25 4.2E-30 176.9 16.3 144 21-172 1-156 (337)
30 3oiy_A Reverse gyrase helicase 99.9 1.4E-25 4.9E-30 182.3 12.3 142 24-171 9-177 (414)
31 2zj8_A DNA helicase, putative 99.9 8.3E-24 2.8E-28 183.0 11.4 151 15-172 2-165 (720)
32 4ddu_A Reverse gyrase; topoiso 99.9 1.9E-23 6.6E-28 187.4 13.4 135 31-171 74-234 (1104)
33 2va8_A SSO2462, SKI2-type heli 99.9 3E-23 1E-27 179.3 14.2 152 13-171 7-171 (715)
34 2ykg_A Probable ATP-dependent 99.9 2.4E-23 8.2E-28 179.0 12.2 134 26-160 3-147 (696)
35 3fho_A ATP-dependent RNA helic 99.9 7E-24 2.4E-28 177.1 8.5 155 12-171 117-286 (508)
36 4a2p_A RIG-I, retinoic acid in 99.9 5.5E-23 1.9E-27 171.8 12.4 127 33-160 4-141 (556)
37 2p6r_A Afuhel308 helicase; pro 99.9 7.6E-24 2.6E-28 182.8 6.8 149 15-171 2-164 (702)
38 3tbk_A RIG-I helicase domain; 99.9 8.4E-23 2.9E-27 170.4 12.5 124 36-160 4-138 (555)
39 1oyw_A RECQ helicase, ATP-depe 99.9 1.8E-22 6.1E-27 169.2 13.8 145 14-169 2-165 (523)
40 2v1x_A ATP-dependent DNA helic 99.9 1.3E-22 4.4E-27 172.2 12.2 141 17-168 24-190 (591)
41 1tf5_A Preprotein translocase 99.9 2.5E-22 8.5E-27 173.6 13.5 133 31-172 79-246 (844)
42 4a2q_A RIG-I, retinoic acid in 99.9 4.7E-22 1.6E-26 173.8 13.2 129 31-160 243-382 (797)
43 1gm5_A RECG; helicase, replica 99.9 1E-21 3.5E-26 170.7 13.5 132 24-160 357-501 (780)
44 1gku_B Reverse gyrase, TOP-RG; 99.9 1.1E-21 3.7E-26 175.7 14.0 136 29-171 51-199 (1054)
45 3b6e_A Interferon-induced heli 99.9 4.7E-22 1.6E-26 147.6 9.2 130 29-160 26-173 (216)
46 4a2w_A RIG-I, retinoic acid in 99.9 1.9E-21 6.3E-26 172.5 10.7 129 31-160 243-382 (936)
47 2fsf_A Preprotein translocase 99.9 1.7E-21 5.8E-26 168.2 10.0 119 32-159 71-204 (853)
48 3l9o_A ATP-dependent RNA helic 99.8 1.4E-21 4.7E-26 175.5 8.3 143 14-171 162-316 (1108)
49 4f92_B U5 small nuclear ribonu 99.8 8.5E-21 2.9E-25 175.8 13.1 145 21-170 911-1070(1724)
50 1nkt_A Preprotein translocase 99.8 6E-21 2E-25 165.3 10.2 133 31-172 107-274 (922)
51 4f92_B U5 small nuclear ribonu 99.8 2E-20 6.9E-25 173.3 11.4 123 33-159 76-217 (1724)
52 2ipc_A Preprotein translocase 99.8 5E-20 1.7E-24 159.6 11.4 120 31-159 75-212 (997)
53 2oca_A DAR protein, ATP-depend 99.8 6.1E-20 2.1E-24 152.8 11.0 132 35-172 112-248 (510)
54 1rif_A DAR protein, DNA helica 99.8 5.9E-20 2E-24 142.5 9.4 131 36-172 113-248 (282)
55 2eyq_A TRCF, transcription-rep 99.8 6.8E-19 2.3E-23 158.7 17.1 147 19-171 586-746 (1151)
56 4gl2_A Interferon-induced heli 99.8 1.7E-20 5.8E-25 161.3 6.3 123 36-160 7-147 (699)
57 2xgj_A ATP-dependent RNA helic 99.8 3.7E-19 1.3E-23 158.6 13.3 127 29-171 80-218 (1010)
58 1wp9_A ATP-dependent RNA helic 99.8 1.5E-18 5.1E-23 141.6 12.2 120 36-160 9-136 (494)
59 4a4z_A Antiviral helicase SKI2 99.8 5E-19 1.7E-23 157.6 9.7 127 31-171 35-173 (997)
60 3llm_A ATP-dependent RNA helic 99.8 4.9E-18 1.7E-22 128.5 11.3 127 34-165 59-193 (235)
61 2fwr_A DNA repair protein RAD2 99.7 1.2E-17 4.2E-22 137.6 10.6 105 36-160 93-203 (472)
62 2fz4_A DNA repair protein RAD2 99.7 4.7E-17 1.6E-21 123.4 12.7 115 36-170 93-213 (237)
63 2whx_A Serine protease/ntpase/ 99.7 1.1E-18 3.7E-23 148.8 1.0 135 19-170 155-301 (618)
64 2jlq_A Serine protease subunit 99.7 4.1E-18 1.4E-22 140.4 3.3 114 33-161 1-122 (451)
65 3o8b_A HCV NS3 protease/helica 99.7 1E-17 3.5E-22 142.9 2.7 118 37-171 218-343 (666)
66 3crv_A XPD/RAD3 related DNA he 99.7 2.3E-16 7.9E-21 132.9 10.4 80 33-120 1-84 (551)
67 2wv9_A Flavivirin protease NS2 99.7 3.3E-18 1.1E-22 146.9 -0.9 118 28-161 202-344 (673)
68 2xau_A PRE-mRNA-splicing facto 99.6 4.5E-15 1.5E-19 129.3 11.8 143 11-163 69-223 (773)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 3.9E-15 1.3E-19 132.8 9.3 122 36-165 271-417 (1038)
70 3h1t_A Type I site-specific re 99.6 2.5E-15 8.5E-20 127.2 6.9 113 36-162 178-315 (590)
71 3rc3_A ATP-dependent RNA helic 99.6 9.9E-15 3.4E-19 125.3 9.5 133 22-172 130-266 (677)
72 2vl7_A XPD; helicase, unknown 99.6 4.6E-15 1.6E-19 124.7 7.3 67 32-105 4-74 (540)
73 2z83_A Helicase/nucleoside tri 99.6 2.4E-15 8.2E-20 124.1 5.0 99 47-160 17-123 (459)
74 1yks_A Genome polyprotein [con 99.5 3.5E-15 1.2E-19 122.5 5.6 99 47-161 4-111 (440)
75 2v6i_A RNA helicase; membrane, 99.5 8.3E-15 2.9E-19 120.0 6.7 97 50-161 1-105 (431)
76 4a15_A XPD helicase, ATP-depen 99.4 3.9E-13 1.3E-17 114.6 8.5 83 36-121 3-89 (620)
77 1z63_A Helicase of the SNF2/RA 99.4 7.5E-13 2.6E-17 109.7 8.1 114 36-159 37-159 (500)
78 3dmq_A RNA polymerase-associat 99.3 5.1E-12 1.7E-16 112.6 6.8 118 36-160 153-284 (968)
79 3jux_A Protein translocase sub 99.3 6.9E-11 2.4E-15 101.3 13.2 81 32-119 72-152 (822)
80 3mwy_W Chromo domain-containin 99.2 3.9E-11 1.3E-15 105.0 8.3 121 36-160 236-378 (800)
81 1w36_D RECD, exodeoxyribonucle 99.2 5.3E-11 1.8E-15 101.3 8.2 126 38-172 151-285 (608)
82 1z3i_X Similar to RAD54-like; 99.1 4.1E-10 1.4E-14 96.4 12.7 122 36-160 55-203 (644)
83 2gk6_A Regulator of nonsense t 98.6 1.1E-06 3.9E-11 74.9 13.3 69 34-104 178-246 (624)
84 4b3f_X DNA-binding protein smu 98.5 1.2E-06 4E-11 75.1 11.3 66 36-104 189-255 (646)
85 2xzl_A ATP-dependent helicase 98.4 2.7E-06 9.3E-11 74.5 12.2 70 34-105 358-427 (802)
86 2wjy_A Regulator of nonsense t 98.4 3.4E-06 1.2E-10 73.9 12.3 68 35-104 355-422 (800)
87 3e1s_A Exodeoxyribonuclease V, 98.3 5.5E-06 1.9E-10 70.0 11.4 113 36-171 189-301 (574)
88 3upu_A ATP-dependent DNA helic 98.2 2.7E-05 9.4E-10 63.9 12.8 70 30-101 19-93 (459)
89 3lfu_A DNA helicase II; SF1 he 97.8 8.9E-05 3E-09 63.0 8.5 71 35-107 8-79 (647)
90 1c4o_A DNA nucleotide excision 97.6 0.00015 5E-09 62.4 7.7 68 33-107 6-78 (664)
91 1uaa_A REP helicase, protein ( 97.6 0.00013 4.3E-09 62.7 7.1 80 36-117 2-84 (673)
92 3u4q_A ATP-dependent helicase/ 97.5 0.00032 1.1E-08 64.2 8.3 69 36-106 10-81 (1232)
93 1pjr_A PCRA; DNA repair, DNA r 97.4 0.00074 2.5E-08 58.5 9.3 81 35-117 10-92 (724)
94 3vkw_A Replicase large subunit 97.0 0.001 3.6E-08 54.3 6.0 93 52-170 162-255 (446)
95 3cpe_A Terminase, DNA packagin 96.8 0.008 2.7E-07 50.8 10.0 74 36-110 163-236 (592)
96 2o0j_A Terminase, DNA packagin 96.8 0.0099 3.4E-07 47.7 10.0 74 36-110 163-236 (385)
97 2d7d_A Uvrabc system protein B 96.7 0.0037 1.3E-07 53.6 7.3 66 36-107 12-82 (661)
98 2rb4_A ATP-dependent RNA helic 96.4 0.065 2.2E-06 37.6 11.0 73 81-158 33-111 (175)
99 2hjv_A ATP-dependent RNA helic 96.3 0.031 1.1E-06 38.9 8.8 72 82-158 35-112 (163)
100 3i5x_A ATP-dependent RNA helic 96.2 0.16 5.5E-06 42.1 14.2 99 62-162 319-423 (563)
101 3ec2_A DNA replication protein 96.2 0.01 3.5E-07 41.9 5.9 59 38-99 16-83 (180)
102 3sqw_A ATP-dependent RNA helic 96.0 0.22 7.5E-06 41.6 14.0 86 72-159 278-369 (579)
103 1fuk_A Eukaryotic initiation f 95.9 0.068 2.3E-06 37.1 9.2 85 64-158 17-107 (165)
104 1t5i_A C_terminal domain of A 95.9 0.077 2.6E-06 37.2 9.3 87 62-158 16-108 (172)
105 3eaq_A Heat resistant RNA depe 95.8 0.057 1.9E-06 39.3 8.5 71 82-157 31-107 (212)
106 2zpa_A Uncharacterized protein 95.6 0.04 1.4E-06 47.3 7.8 102 36-172 175-278 (671)
107 2p6n_A ATP-dependent RNA helic 95.4 0.25 8.5E-06 35.3 10.6 71 83-158 55-131 (191)
108 2chg_A Replication factor C sm 95.4 0.17 5.8E-06 35.9 9.7 16 52-67 39-54 (226)
109 1a5t_A Delta prime, HOLB; zinc 95.3 0.056 1.9E-06 42.1 7.3 39 38-77 4-49 (334)
110 2jgn_A DBX, DDX3, ATP-dependen 95.2 0.13 4.4E-06 36.6 8.5 89 61-158 29-123 (185)
111 1xti_A Probable ATP-dependent 95.0 0.34 1.2E-05 37.8 11.2 74 81-159 249-328 (391)
112 3pey_A ATP-dependent RNA helic 94.7 0.42 1.4E-05 37.2 10.9 73 81-158 242-320 (395)
113 3co5_A Putative two-component 94.6 0.03 1E-06 38.1 3.6 20 48-67 24-43 (143)
114 2d7d_A Uvrabc system protein B 94.6 0.25 8.6E-06 42.3 10.0 81 81-166 444-531 (661)
115 3n70_A Transport activator; si 94.5 0.037 1.3E-06 37.7 3.9 20 49-68 22-41 (145)
116 1s2m_A Putative ATP-dependent 94.5 0.56 1.9E-05 36.7 11.3 73 81-158 257-335 (400)
117 2kjq_A DNAA-related protein; s 94.4 0.092 3.1E-06 36.1 5.8 18 50-67 35-52 (149)
118 2i4i_A ATP-dependent RNA helic 94.3 0.49 1.7E-05 37.3 10.7 72 81-157 275-352 (417)
119 2v1x_A ATP-dependent DNA helic 94.2 0.52 1.8E-05 39.8 11.0 73 81-158 266-344 (591)
120 3dm5_A SRP54, signal recogniti 94.1 0.32 1.1E-05 39.7 9.2 59 52-117 101-161 (443)
121 3kl4_A SRP54, signal recogniti 94.0 0.31 1.1E-05 39.6 9.0 57 52-115 98-156 (433)
122 3i32_A Heat resistant RNA depe 93.9 0.42 1.4E-05 36.8 9.2 72 82-158 28-105 (300)
123 3fht_A ATP-dependent RNA helic 93.9 0.27 9.1E-06 38.6 8.2 72 82-158 266-343 (412)
124 2oap_1 GSPE-2, type II secreti 93.7 0.14 4.8E-06 42.5 6.5 48 26-76 236-284 (511)
125 1c4o_A DNA nucleotide excision 93.7 0.45 1.5E-05 40.7 9.8 83 81-168 438-527 (664)
126 3u61_B DNA polymerase accessor 93.6 0.38 1.3E-05 36.8 8.6 16 53-68 50-65 (324)
127 3cf0_A Transitional endoplasmi 93.6 0.035 1.2E-06 42.6 2.6 58 10-68 8-66 (301)
128 2j0s_A ATP-dependent RNA helic 93.6 0.54 1.9E-05 37.0 9.6 71 83-158 277-353 (410)
129 3hr8_A Protein RECA; alpha and 93.5 0.082 2.8E-06 41.9 4.5 40 51-93 61-100 (356)
130 1d2n_A N-ethylmaleimide-sensit 93.4 0.025 8.7E-07 42.6 1.5 17 52-68 65-81 (272)
131 2w58_A DNAI, primosome compone 93.4 0.24 8.1E-06 35.2 6.6 25 52-77 55-79 (202)
132 1p9r_A General secretion pathw 93.4 0.1 3.5E-06 42.3 5.0 45 29-77 146-192 (418)
133 2db3_A ATP-dependent RNA helic 93.4 0.85 2.9E-05 36.6 10.5 70 84-158 302-377 (434)
134 3cmu_A Protein RECA, recombina 93.2 0.073 2.5E-06 50.9 4.4 46 45-93 1415-1466(2050)
135 1oyw_A RECQ helicase, ATP-depe 93.1 0.85 2.9E-05 37.8 10.3 73 81-158 235-313 (523)
136 3h4m_A Proteasome-activating n 93.1 0.034 1.2E-06 42.0 1.6 56 11-68 11-68 (285)
137 3b85_A Phosphate starvation-in 93.0 0.088 3E-06 38.4 3.8 35 34-68 5-39 (208)
138 2orw_A Thymidine kinase; TMTK, 92.9 0.19 6.5E-06 35.8 5.3 40 50-92 2-41 (184)
139 1e9r_A Conjugal transfer prote 92.9 0.14 4.8E-06 41.3 5.2 43 50-95 52-94 (437)
140 3e2i_A Thymidine kinase; Zn-bi 92.8 0.16 5.5E-06 37.5 5.0 41 50-93 27-67 (219)
141 2eyu_A Twitching motility prot 92.8 0.09 3.1E-06 39.7 3.7 21 48-68 22-42 (261)
142 2gza_A Type IV secretion syste 92.7 0.14 4.7E-06 40.6 4.8 21 47-67 171-191 (361)
143 4b4t_M 26S protease regulatory 92.6 0.041 1.4E-06 44.8 1.6 56 10-68 174-232 (434)
144 3hws_A ATP-dependent CLP prote 92.6 0.17 5.8E-06 39.8 5.2 19 50-68 50-68 (363)
145 2qgz_A Helicase loader, putati 92.6 0.25 8.6E-06 38.1 6.0 26 51-77 152-177 (308)
146 2b8t_A Thymidine kinase; deoxy 92.4 0.16 5.5E-06 37.5 4.5 40 50-92 11-50 (223)
147 2yjt_D ATP-dependent RNA helic 91.5 0.025 8.6E-07 39.6 0.0 73 81-158 29-107 (170)
148 2dr3_A UPF0273 protein PH0284; 92.2 0.2 6.8E-06 36.6 4.9 50 50-103 22-71 (247)
149 1hv8_A Putative ATP-dependent 92.1 0.57 2E-05 36.0 7.7 73 81-158 237-315 (367)
150 1wp9_A ATP-dependent RNA helic 92.1 0.76 2.6E-05 36.4 8.6 94 60-159 340-447 (494)
151 3io5_A Recombination and repai 92.0 0.26 8.9E-06 38.6 5.4 42 53-95 30-71 (333)
152 1xx6_A Thymidine kinase; NESG, 92.0 0.2 7E-06 36.0 4.6 40 50-92 7-46 (191)
153 1ofh_A ATP-dependent HSL prote 92.0 0.35 1.2E-05 36.5 6.2 18 51-68 50-67 (310)
154 1kgd_A CASK, peripheral plasma 91.7 0.093 3.2E-06 37.0 2.5 20 49-68 3-22 (180)
155 3eie_A Vacuolar protein sortin 91.7 0.037 1.3E-06 42.9 0.4 52 11-68 12-68 (322)
156 3nbx_X ATPase RAVA; AAA+ ATPas 91.6 0.27 9.2E-06 40.7 5.4 42 25-67 16-57 (500)
157 1jbk_A CLPB protein; beta barr 91.5 0.1 3.5E-06 36.1 2.5 25 51-76 43-67 (195)
158 3te6_A Regulatory protein SIR3 91.4 0.092 3.1E-06 41.0 2.3 26 51-77 45-70 (318)
159 2eyq_A TRCF, transcription-rep 91.4 0.9 3.1E-05 41.4 9.0 77 81-160 811-893 (1151)
160 3bos_A Putative DNA replicatio 91.3 0.11 3.8E-06 37.6 2.5 19 50-68 51-69 (242)
161 1l8q_A Chromosomal replication 91.1 0.4 1.4E-05 36.8 5.7 36 51-89 37-72 (324)
162 2r44_A Uncharacterized protein 91.0 0.15 5.2E-06 39.3 3.2 24 45-68 40-63 (331)
163 3jvv_A Twitching mobility prot 91.0 0.24 8.1E-06 39.2 4.3 27 50-77 122-148 (356)
164 3vaa_A Shikimate kinase, SK; s 91.0 0.12 4.3E-06 36.9 2.5 19 50-68 24-42 (199)
165 2pt7_A CAG-ALFA; ATPase, prote 90.9 0.12 4.2E-06 40.4 2.6 19 48-66 168-186 (330)
166 2bjv_A PSP operon transcriptio 90.9 0.21 7.2E-06 37.2 3.9 19 50-68 28-46 (265)
167 2gno_A DNA polymerase III, gam 90.9 1.3 4.3E-05 34.1 8.3 17 52-68 19-35 (305)
168 1tue_A Replication protein E1; 90.8 0.4 1.4E-05 35.1 5.1 50 24-76 29-82 (212)
169 2i1q_A DNA repair and recombin 90.8 0.45 1.6E-05 36.6 5.8 55 51-105 98-166 (322)
170 1lvg_A Guanylate kinase, GMP k 90.7 0.13 4.5E-06 36.9 2.5 19 50-68 3-21 (198)
171 3iij_A Coilin-interacting nucl 90.6 0.1 3.5E-06 36.5 1.8 20 49-68 9-28 (180)
172 2p65_A Hypothetical protein PF 90.6 0.1 3.5E-06 36.1 1.7 18 51-68 43-60 (187)
173 1u0j_A DNA replication protein 90.5 0.54 1.9E-05 35.7 5.8 48 23-74 73-126 (267)
174 3u4q_B ATP-dependent helicase/ 90.5 0.25 8.6E-06 44.9 4.6 39 54-92 4-42 (1166)
175 1qhx_A CPT, protein (chloramph 90.5 0.15 5E-06 35.5 2.5 18 51-68 3-20 (178)
176 3eiq_A Eukaryotic initiation f 90.4 0.47 1.6E-05 37.3 5.7 73 81-158 279-357 (414)
177 3syl_A Protein CBBX; photosynt 90.4 0.13 4.5E-06 39.1 2.4 18 51-68 67-84 (309)
178 2j41_A Guanylate kinase; GMP, 90.4 0.14 4.9E-06 36.4 2.5 21 48-68 3-23 (207)
179 2xau_A PRE-mRNA-splicing facto 90.4 0.79 2.7E-05 40.0 7.4 75 81-155 302-393 (773)
180 3tau_A Guanylate kinase, GMP k 90.3 0.15 5.2E-06 36.8 2.5 19 50-68 7-25 (208)
181 3vkg_A Dynein heavy chain, cyt 90.2 0.72 2.5E-05 46.2 7.6 49 20-69 872-924 (3245)
182 1zp6_A Hypothetical protein AT 90.2 0.1 3.4E-06 36.8 1.4 20 48-67 6-25 (191)
183 4ag6_A VIRB4 ATPase, type IV s 90.2 0.35 1.2E-05 38.3 4.8 21 50-70 34-54 (392)
184 3trf_A Shikimate kinase, SK; a 90.0 0.17 5.7E-06 35.4 2.5 18 51-68 5-22 (185)
185 2zts_A Putative uncharacterize 90.0 0.28 9.6E-06 35.8 3.8 50 50-102 29-78 (251)
186 3tr0_A Guanylate kinase, GMP k 89.9 0.17 6E-06 35.9 2.5 19 50-68 6-24 (205)
187 2x8a_A Nuclear valosin-contain 89.8 0.1 3.4E-06 39.6 1.2 54 12-68 5-61 (274)
188 3b9p_A CG5977-PA, isoform A; A 89.8 0.16 5.5E-06 38.5 2.4 18 51-68 54-71 (297)
189 1kag_A SKI, shikimate kinase I 89.7 0.19 6.6E-06 34.7 2.6 18 51-68 4-21 (173)
190 4b4t_J 26S protease regulatory 89.7 0.16 5.5E-06 41.0 2.4 55 11-68 142-199 (405)
191 3h1t_A Type I site-specific re 89.6 4.7 0.00016 33.5 11.4 83 80-162 437-530 (590)
192 2qz4_A Paraplegin; AAA+, SPG7, 89.5 0.17 5.9E-06 37.3 2.3 18 51-68 39-56 (262)
193 4b4t_H 26S protease regulatory 89.5 0.13 4.5E-06 42.2 1.7 55 11-68 203-260 (467)
194 1yks_A Genome polyprotein [con 89.4 0.73 2.5E-05 37.2 6.2 66 82-154 177-245 (440)
195 3uk6_A RUVB-like 2; hexameric 89.4 0.18 6.1E-06 39.4 2.4 24 52-76 71-94 (368)
196 3lw7_A Adenylate kinase relate 89.3 0.18 6.3E-06 34.4 2.2 16 53-68 3-18 (179)
197 1y63_A LMAJ004144AAA protein; 89.2 0.22 7.4E-06 35.1 2.5 19 50-68 9-27 (184)
198 2qor_A Guanylate kinase; phosp 89.2 0.22 7.6E-06 35.6 2.7 20 48-67 9-28 (204)
199 1z6g_A Guanylate kinase; struc 89.2 0.23 7.8E-06 36.2 2.7 21 48-68 20-40 (218)
200 4b4t_L 26S protease subunit RP 89.0 0.12 4.2E-06 42.1 1.3 55 11-68 175-232 (437)
201 1znw_A Guanylate kinase, GMP k 89.0 0.23 7.8E-06 35.7 2.6 22 47-68 16-37 (207)
202 1lv7_A FTSH; alpha/beta domain 89.0 0.2 6.7E-06 37.2 2.3 55 11-68 6-62 (257)
203 4b4t_K 26S protease regulatory 89.0 0.14 4.7E-06 41.7 1.5 55 11-68 166-223 (428)
204 1kht_A Adenylate kinase; phosp 89.0 0.22 7.5E-06 34.8 2.4 18 50-67 2-19 (192)
205 3a00_A Guanylate kinase, GMP k 89.0 0.23 8E-06 35.0 2.6 17 52-68 2-18 (186)
206 2z4s_A Chromosomal replication 88.9 0.43 1.5E-05 38.7 4.4 47 51-99 130-176 (440)
207 2ewv_A Twitching motility prot 88.9 0.16 5.4E-06 40.4 1.7 19 49-67 134-152 (372)
208 4gp7_A Metallophosphoesterase; 88.9 0.19 6.3E-06 35.1 2.0 20 50-69 8-27 (171)
209 3ney_A 55 kDa erythrocyte memb 88.7 0.24 8.1E-06 35.9 2.5 20 49-68 17-36 (197)
210 3hjh_A Transcription-repair-co 88.7 1.3 4.5E-05 36.4 7.2 51 50-106 13-63 (483)
211 3a8t_A Adenylate isopentenyltr 88.7 0.2 6.9E-06 39.4 2.2 25 51-76 40-64 (339)
212 2ze6_A Isopentenyl transferase 88.7 0.21 7E-06 37.4 2.2 16 53-68 3-18 (253)
213 1w36_B RECB, exodeoxyribonucle 88.7 1.1 3.8E-05 40.9 7.3 56 50-106 16-80 (1180)
214 2px0_A Flagellar biosynthesis 88.7 0.43 1.5E-05 36.6 4.1 18 51-68 105-122 (296)
215 4eun_A Thermoresistant glucoki 88.6 0.24 8.3E-06 35.3 2.5 19 50-68 28-46 (200)
216 1n0w_A DNA repair protein RAD5 88.6 0.69 2.4E-05 33.5 5.1 21 50-70 23-43 (243)
217 1ex7_A Guanylate kinase; subst 88.5 0.25 8.4E-06 35.4 2.5 16 52-67 2-17 (186)
218 1s96_A Guanylate kinase, GMP k 88.5 0.25 8.5E-06 36.2 2.5 22 47-68 12-33 (219)
219 2qmh_A HPR kinase/phosphorylas 88.5 0.21 7.3E-06 36.4 2.1 18 50-67 33-50 (205)
220 1ojl_A Transcriptional regulat 88.4 0.36 1.2E-05 37.1 3.5 19 50-68 24-42 (304)
221 2ius_A DNA translocase FTSK; n 88.4 0.82 2.8E-05 38.0 5.8 19 50-68 166-184 (512)
222 3exa_A TRNA delta(2)-isopenten 88.3 0.23 8E-06 38.7 2.4 23 52-75 4-26 (322)
223 2qby_A CDC6 homolog 1, cell di 88.3 0.94 3.2E-05 35.0 5.9 25 51-76 45-69 (386)
224 1knq_A Gluconate kinase; ALFA/ 88.2 0.22 7.4E-06 34.6 2.0 19 50-68 7-25 (175)
225 2z43_A DNA repair and recombin 88.2 0.72 2.5E-05 35.7 5.1 54 51-104 107-164 (324)
226 3foz_A TRNA delta(2)-isopenten 88.2 0.24 8.3E-06 38.5 2.4 22 53-75 12-33 (316)
227 2cvh_A DNA repair and recombin 88.2 0.35 1.2E-05 34.6 3.1 35 50-90 19-53 (220)
228 1vma_A Cell division protein F 88.1 2.9 9.9E-05 32.2 8.4 17 52-68 105-121 (306)
229 2w0m_A SSO2452; RECA, SSPF, un 88.0 0.77 2.6E-05 32.9 4.9 19 50-68 22-40 (235)
230 1cr0_A DNA primase/helicase; R 87.8 0.61 2.1E-05 35.3 4.4 39 49-89 33-71 (296)
231 3nwn_A Kinesin-like protein KI 87.7 0.42 1.4E-05 37.9 3.5 24 45-68 97-122 (359)
232 1xwi_A SKD1 protein; VPS4B, AA 87.7 0.26 9.1E-06 38.1 2.4 50 13-68 8-62 (322)
233 2qby_B CDC6 homolog 3, cell di 87.7 0.75 2.6E-05 35.8 5.0 25 51-76 45-69 (384)
234 1np6_A Molybdopterin-guanine d 87.6 0.99 3.4E-05 31.8 5.1 25 52-77 7-31 (174)
235 1ly1_A Polynucleotide kinase; 87.6 0.28 9.5E-06 33.9 2.2 16 53-68 4-19 (181)
236 3tbk_A RIG-I helicase domain; 87.6 2 6.9E-05 34.9 7.8 95 62-158 370-479 (555)
237 3kb2_A SPBC2 prophage-derived 87.6 0.28 9.5E-06 33.6 2.2 16 53-68 3-18 (173)
238 3t15_A Ribulose bisphosphate c 87.6 0.25 8.6E-06 37.7 2.1 24 52-76 37-60 (293)
239 1njg_A DNA polymerase III subu 87.6 0.52 1.8E-05 33.6 3.8 16 53-68 47-62 (250)
240 3cm0_A Adenylate kinase; ATP-b 87.5 0.21 7E-06 35.0 1.5 19 50-68 3-21 (186)
241 1m7g_A Adenylylsulfate kinase; 87.4 0.46 1.6E-05 34.1 3.4 31 37-68 12-42 (211)
242 1w4r_A Thymidine kinase; type 87.3 0.79 2.7E-05 33.1 4.5 39 50-91 19-57 (195)
243 1xjc_A MOBB protein homolog; s 87.3 0.84 2.9E-05 32.1 4.6 24 53-77 6-29 (169)
244 2j9r_A Thymidine kinase; TK1, 87.3 0.87 3E-05 33.4 4.8 40 51-93 28-67 (214)
245 2v1u_A Cell division control p 87.1 0.29 1E-05 38.1 2.3 19 50-68 43-61 (387)
246 1ixz_A ATP-dependent metallopr 87.0 0.3 1E-05 36.1 2.3 55 11-68 10-66 (254)
247 2chq_A Replication factor C sm 87.0 1.4 4.6E-05 33.3 6.0 17 52-68 39-55 (319)
248 1bg2_A Kinesin; motor protein, 87.0 0.52 1.8E-05 36.8 3.6 23 46-68 71-95 (325)
249 4fcw_A Chaperone protein CLPB; 86.9 0.37 1.3E-05 36.5 2.8 17 52-68 48-64 (311)
250 2zan_A Vacuolar protein sortin 86.9 0.19 6.5E-06 40.8 1.1 18 51-68 167-184 (444)
251 2c9o_A RUVB-like 1; hexameric 86.8 0.32 1.1E-05 39.5 2.4 25 51-76 63-87 (456)
252 2ehv_A Hypothetical protein PH 86.8 0.36 1.2E-05 35.2 2.5 22 48-69 27-48 (251)
253 3bh0_A DNAB-like replicative h 86.7 0.88 3E-05 35.1 4.8 38 50-90 67-104 (315)
254 1um8_A ATP-dependent CLP prote 86.7 0.36 1.2E-05 38.0 2.6 18 51-68 72-89 (376)
255 3pfi_A Holliday junction ATP-d 86.7 0.35 1.2E-05 37.3 2.5 17 52-68 56-72 (338)
256 2qp9_X Vacuolar protein sortin 86.7 0.36 1.2E-05 37.9 2.6 18 51-68 84-101 (355)
257 3dc4_A Kinesin-like protein NO 86.6 0.49 1.7E-05 37.3 3.3 23 46-68 88-112 (344)
258 1rj9_A FTSY, signal recognitio 86.5 0.9 3.1E-05 35.0 4.7 18 51-68 102-119 (304)
259 3uie_A Adenylyl-sulfate kinase 86.5 0.32 1.1E-05 34.7 2.1 31 37-68 12-42 (200)
260 1v5w_A DMC1, meiotic recombina 86.4 0.79 2.7E-05 35.8 4.4 42 51-92 122-166 (343)
261 4gl2_A Interferon-induced heli 86.4 1.2 4E-05 37.9 5.8 76 82-158 400-491 (699)
262 3nwj_A ATSK2; P loop, shikimat 86.3 0.44 1.5E-05 35.7 2.8 20 49-68 46-65 (250)
263 3dmq_A RNA polymerase-associat 86.3 1.8 6E-05 38.8 7.1 82 81-166 502-591 (968)
264 4b4t_I 26S protease regulatory 86.3 0.21 7.3E-06 40.6 1.1 55 11-68 176-233 (437)
265 1ls1_A Signal recognition part 86.2 4.1 0.00014 31.0 8.3 18 51-68 98-115 (295)
266 4a14_A Kinesin, kinesin-like p 86.1 0.61 2.1E-05 36.7 3.6 23 46-68 77-101 (344)
267 4akg_A Glutathione S-transfera 86.1 2 6.8E-05 42.6 7.7 48 21-69 890-941 (2695)
268 2ykg_A Probable ATP-dependent 86.1 2 6.8E-05 36.4 7.1 95 62-158 379-488 (696)
269 1goj_A Kinesin, kinesin heavy 86.0 0.62 2.1E-05 36.9 3.6 22 47-68 75-98 (355)
270 2y65_A Kinesin, kinesin heavy 85.9 0.62 2.1E-05 37.0 3.6 23 46-68 78-102 (365)
271 2bdt_A BH3686; alpha-beta prot 85.9 0.28 9.5E-06 34.5 1.5 17 52-68 3-19 (189)
272 3t0q_A AGR253WP; kinesin, alph 85.9 0.65 2.2E-05 36.6 3.7 25 44-68 77-103 (349)
273 3b6u_A Kinesin-like protein KI 85.9 0.61 2.1E-05 37.2 3.5 23 46-68 95-119 (372)
274 2vvg_A Kinesin-2; motor protei 85.9 0.63 2.2E-05 36.7 3.6 22 47-68 84-107 (350)
275 2c95_A Adenylate kinase 1; tra 85.8 0.46 1.6E-05 33.3 2.6 20 49-68 7-26 (196)
276 3lnc_A Guanylate kinase, GMP k 85.8 0.29 9.8E-06 35.7 1.5 20 49-68 25-44 (231)
277 3d8b_A Fidgetin-like protein 1 85.8 0.4 1.4E-05 37.6 2.4 18 51-68 117-134 (357)
278 4etp_A Kinesin-like protein KA 85.8 0.63 2.2E-05 37.4 3.6 25 44-68 132-158 (403)
279 3lre_A Kinesin-like protein KI 85.7 0.63 2.2E-05 36.8 3.6 23 46-68 99-123 (355)
280 2h58_A Kinesin-like protein KI 85.7 0.71 2.4E-05 36.1 3.8 25 44-68 72-98 (330)
281 1sxj_D Activator 1 41 kDa subu 85.7 0.61 2.1E-05 35.9 3.5 17 52-68 59-75 (353)
282 1tev_A UMP-CMP kinase; ploop, 85.7 0.36 1.2E-05 33.7 2.0 18 51-68 3-20 (196)
283 2v6i_A RNA helicase; membrane, 85.7 2.3 7.8E-05 34.2 6.9 65 82-153 171-238 (431)
284 3vfd_A Spastin; ATPase, microt 85.6 0.4 1.4E-05 38.0 2.4 18 51-68 148-165 (389)
285 3c8u_A Fructokinase; YP_612366 85.6 0.34 1.2E-05 34.8 1.8 18 50-67 21-38 (208)
286 3bgw_A DNAB-like replicative h 85.6 0.93 3.2E-05 36.8 4.6 38 50-90 196-233 (444)
287 2zfi_A Kinesin-like protein KI 85.6 0.71 2.4E-05 36.6 3.8 23 46-68 83-107 (366)
288 1v8k_A Kinesin-like protein KI 85.5 0.69 2.4E-05 37.3 3.7 23 46-68 148-172 (410)
289 2r62_A Cell division protease 85.5 0.18 6.3E-06 37.5 0.4 18 51-68 44-61 (268)
290 3tif_A Uncharacterized ABC tra 85.5 0.37 1.3E-05 35.6 2.0 18 49-66 29-46 (235)
291 2rhm_A Putative kinase; P-loop 85.5 0.38 1.3E-05 33.7 2.0 18 51-68 5-22 (193)
292 3d3q_A TRNA delta(2)-isopenten 85.5 0.4 1.4E-05 37.8 2.2 16 53-68 9-24 (340)
293 1t5c_A CENP-E protein, centrom 85.5 0.7 2.4E-05 36.4 3.7 23 46-68 71-95 (349)
294 2nr8_A Kinesin-like protein KI 85.5 0.7 2.4E-05 36.6 3.7 24 45-68 96-121 (358)
295 3gbj_A KIF13B protein; kinesin 85.5 0.7 2.4E-05 36.5 3.7 24 45-68 85-110 (354)
296 1g5t_A COB(I)alamin adenosyltr 85.4 1.2 3.9E-05 32.3 4.5 35 52-89 29-63 (196)
297 3crm_A TRNA delta(2)-isopenten 85.4 0.4 1.4E-05 37.5 2.2 17 52-68 6-22 (323)
298 1ye8_A Protein THEP1, hypothet 85.3 0.45 1.5E-05 33.6 2.3 16 53-68 2-17 (178)
299 3t61_A Gluconokinase; PSI-biol 85.3 0.43 1.5E-05 33.9 2.2 17 52-68 19-35 (202)
300 1hqc_A RUVB; extended AAA-ATPa 85.2 0.32 1.1E-05 37.2 1.6 18 51-68 38-55 (324)
301 1iy2_A ATP-dependent metallopr 85.1 0.44 1.5E-05 35.8 2.3 54 12-68 35-90 (278)
302 3asz_A Uridine kinase; cytidin 85.0 0.4 1.4E-05 34.2 2.0 19 50-68 5-23 (211)
303 1x88_A Kinesin-like protein KI 85.0 0.72 2.5E-05 36.5 3.5 23 46-68 82-106 (359)
304 2pez_A Bifunctional 3'-phospho 85.0 0.43 1.5E-05 33.2 2.0 19 50-68 4-22 (179)
305 1f9v_A Kinesin-like protein KA 84.8 0.69 2.4E-05 36.5 3.4 24 45-68 77-102 (347)
306 1via_A Shikimate kinase; struc 84.7 0.52 1.8E-05 32.6 2.4 17 52-68 5-21 (175)
307 2v54_A DTMP kinase, thymidylat 84.7 0.54 1.9E-05 33.2 2.6 19 50-68 3-21 (204)
308 3u06_A Protein claret segregat 84.6 0.73 2.5E-05 37.2 3.5 25 44-68 130-156 (412)
309 3bfn_A Kinesin-like protein KI 84.5 0.75 2.5E-05 36.9 3.5 22 47-68 93-116 (388)
310 3cob_A Kinesin heavy chain-lik 84.5 0.68 2.3E-05 36.8 3.2 24 45-68 72-97 (369)
311 1nij_A Hypothetical protein YJ 84.5 0.83 2.8E-05 35.3 3.7 15 53-67 6-20 (318)
312 2zr9_A Protein RECA, recombina 84.5 1.3 4.6E-05 34.7 4.9 38 51-91 61-98 (349)
313 3fb4_A Adenylate kinase; psych 84.4 0.52 1.8E-05 33.8 2.3 16 53-68 2-17 (216)
314 2qt1_A Nicotinamide riboside k 84.4 0.26 8.9E-06 35.2 0.7 22 47-68 17-38 (207)
315 1in4_A RUVB, holliday junction 84.4 0.52 1.8E-05 36.6 2.5 17 52-68 52-68 (334)
316 2bwj_A Adenylate kinase 5; pho 84.3 0.6 2E-05 32.8 2.6 19 50-68 11-29 (199)
317 3e70_C DPA, signal recognition 84.3 1.9 6.7E-05 33.5 5.7 17 51-67 129-145 (328)
318 1fnn_A CDC6P, cell division co 84.3 0.7 2.4E-05 36.0 3.2 35 53-89 46-80 (389)
319 2iut_A DNA translocase FTSK; n 84.3 1.8 6.1E-05 36.5 5.8 41 51-91 214-255 (574)
320 1gvn_B Zeta; postsegregational 84.3 0.41 1.4E-05 36.5 1.8 18 51-68 33-50 (287)
321 2wbe_C Bipolar kinesin KRP-130 84.2 0.78 2.7E-05 36.5 3.5 22 47-68 95-118 (373)
322 2heh_A KIF2C protein; kinesin, 84.2 0.78 2.7E-05 36.7 3.5 23 46-68 128-152 (387)
323 3eph_A TRNA isopentenyltransfe 84.2 0.49 1.7E-05 38.2 2.2 22 53-75 4-25 (409)
324 1aky_A Adenylate kinase; ATP:A 84.1 0.59 2E-05 33.7 2.6 19 50-68 3-21 (220)
325 1ak2_A Adenylate kinase isoenz 84.1 0.56 1.9E-05 34.2 2.5 19 50-68 15-33 (233)
326 2wv9_A Flavivirin protease NS2 84.1 1.5 5.3E-05 37.6 5.5 66 82-154 410-478 (673)
327 2iyv_A Shikimate kinase, SK; t 84.0 0.64 2.2E-05 32.4 2.6 17 52-68 3-19 (184)
328 3dl0_A Adenylate kinase; phosp 83.9 0.56 1.9E-05 33.7 2.3 16 53-68 2-17 (216)
329 3k1j_A LON protease, ATP-depen 83.9 1.7 5.7E-05 36.7 5.6 23 46-68 55-77 (604)
330 2owm_A Nckin3-434, related to 83.8 0.92 3.2E-05 37.0 3.8 23 46-68 130-154 (443)
331 2cbz_A Multidrug resistance-as 83.8 0.49 1.7E-05 35.0 2.0 19 49-67 29-47 (237)
332 1u94_A RECA protein, recombina 83.7 1.6 5.4E-05 34.5 5.0 37 51-90 63-99 (356)
333 2q6t_A DNAB replication FORK h 83.7 1.2 4.2E-05 36.0 4.5 39 50-90 199-237 (444)
334 1zd8_A GTP:AMP phosphotransfer 83.6 0.59 2E-05 33.9 2.4 19 50-68 6-24 (227)
335 4a1f_A DNAB helicase, replicat 83.5 1.5 5.1E-05 34.4 4.8 38 50-90 45-82 (338)
336 2plr_A DTMP kinase, probable t 83.5 0.51 1.7E-05 33.5 2.0 19 50-68 3-21 (213)
337 2r6a_A DNAB helicase, replicat 83.5 1.2 4.2E-05 36.1 4.4 39 50-90 202-240 (454)
338 1ry6_A Internal kinesin; kines 83.5 0.9 3.1E-05 36.0 3.5 19 50-68 82-102 (360)
339 1zuh_A Shikimate kinase; alpha 83.5 0.61 2.1E-05 32.0 2.3 17 52-68 8-24 (168)
340 2z0m_A 337AA long hypothetical 83.5 2.6 9E-05 31.8 6.2 70 81-159 219-294 (337)
341 3b9q_A Chloroplast SRP recepto 83.5 1 3.6E-05 34.6 3.8 18 51-68 100-117 (302)
342 3kta_A Chromosome segregation 83.4 0.56 1.9E-05 32.6 2.1 16 53-68 28-43 (182)
343 3qf7_A RAD50; ABC-ATPase, ATPa 83.3 0.55 1.9E-05 37.1 2.2 16 53-68 25-40 (365)
344 1cke_A CK, MSSA, protein (cyti 83.3 0.63 2.1E-05 33.5 2.4 18 51-68 5-22 (227)
345 2yvu_A Probable adenylyl-sulfa 83.3 0.55 1.9E-05 32.9 2.0 19 50-68 12-30 (186)
346 1e6c_A Shikimate kinase; phosp 83.3 0.67 2.3E-05 31.8 2.5 17 52-68 3-19 (173)
347 1f2t_A RAD50 ABC-ATPase; DNA d 83.3 0.62 2.1E-05 31.8 2.2 15 53-67 25-39 (149)
348 1g8p_A Magnesium-chelatase 38 83.2 0.32 1.1E-05 37.6 0.8 18 51-68 45-62 (350)
349 1sgw_A Putative ABC transporte 83.2 0.56 1.9E-05 34.2 2.1 27 146-172 148-178 (214)
350 2cdn_A Adenylate kinase; phosp 83.1 0.7 2.4E-05 32.8 2.6 18 51-68 20-37 (201)
351 1zak_A Adenylate kinase; ATP:A 83.1 0.69 2.4E-05 33.4 2.6 18 51-68 5-22 (222)
352 2i3b_A HCR-ntpase, human cance 83.0 0.71 2.4E-05 32.9 2.6 18 51-68 1-18 (189)
353 3cf2_A TER ATPase, transitiona 83.0 0.69 2.4E-05 40.6 2.9 57 11-68 471-528 (806)
354 2rep_A Kinesin-like protein KI 82.9 0.9 3.1E-05 36.2 3.3 24 45-68 108-133 (376)
355 1nks_A Adenylate kinase; therm 82.8 0.6 2.1E-05 32.5 2.1 16 53-68 3-18 (194)
356 2wwf_A Thymidilate kinase, put 82.8 0.69 2.4E-05 32.8 2.4 19 50-68 9-27 (212)
357 3hu3_A Transitional endoplasmi 82.7 0.61 2.1E-05 38.5 2.3 18 51-68 238-255 (489)
358 3o8b_A HCV NS3 protease/helica 82.7 1.2 4E-05 38.3 4.1 65 81-154 395-461 (666)
359 3pvs_A Replication-associated 82.7 0.62 2.1E-05 37.9 2.3 17 52-68 51-67 (447)
360 4a74_A DNA repair and recombin 82.6 0.65 2.2E-05 33.3 2.3 19 50-68 24-42 (231)
361 3tqc_A Pantothenate kinase; bi 82.6 3.2 0.00011 32.3 6.3 16 53-68 94-109 (321)
362 2r8r_A Sensor protein; KDPD, P 82.6 1.8 6E-05 32.1 4.6 18 53-70 8-25 (228)
363 1nn5_A Similar to deoxythymidy 82.6 0.73 2.5E-05 32.8 2.5 19 50-68 8-26 (215)
364 1iqp_A RFCS; clamp loader, ext 82.3 0.99 3.4E-05 34.2 3.3 17 52-68 47-63 (327)
365 3gfo_A Cobalt import ATP-bindi 82.3 0.57 1.9E-05 35.6 1.9 19 49-67 32-50 (275)
366 2ff7_A Alpha-hemolysin translo 82.3 0.59 2E-05 34.8 2.0 19 49-67 33-51 (247)
367 2ghi_A Transport protein; mult 82.2 0.62 2.1E-05 35.0 2.0 19 49-67 44-62 (260)
368 1z63_A Helicase of the SNF2/RA 82.2 16 0.00054 29.4 10.7 95 60-161 322-424 (500)
369 2r2a_A Uncharacterized protein 82.1 1.1 3.7E-05 32.3 3.3 17 53-69 7-23 (199)
370 2if2_A Dephospho-COA kinase; a 82.1 0.7 2.4E-05 32.8 2.2 16 53-68 3-18 (204)
371 1qf9_A UMP/CMP kinase, protein 82.1 0.68 2.3E-05 32.2 2.2 17 52-68 7-23 (194)
372 2pt5_A Shikimate kinase, SK; a 82.1 0.74 2.5E-05 31.4 2.3 16 53-68 2-17 (168)
373 2orv_A Thymidine kinase; TP4A 82.0 1.9 6.5E-05 32.0 4.6 41 50-93 18-58 (234)
374 2bbw_A Adenylate kinase 4, AK4 82.0 0.76 2.6E-05 33.8 2.5 18 51-68 27-44 (246)
375 2jlq_A Serine protease subunit 82.0 2.2 7.5E-05 34.5 5.4 65 83-154 189-256 (451)
376 4e22_A Cytidylate kinase; P-lo 81.9 0.78 2.7E-05 34.1 2.5 19 50-68 26-44 (252)
377 2pze_A Cystic fibrosis transme 81.9 0.8 2.7E-05 33.6 2.5 19 49-67 32-50 (229)
378 1nlf_A Regulatory protein REPA 81.6 0.8 2.7E-05 34.4 2.5 24 47-70 26-49 (279)
379 1jjv_A Dephospho-COA kinase; P 81.6 0.74 2.5E-05 32.7 2.2 16 53-68 4-19 (206)
380 1sxj_A Activator 1 95 kDa subu 81.6 1.3 4.3E-05 36.7 3.9 17 52-68 78-94 (516)
381 4g1u_C Hemin import ATP-bindin 81.5 0.63 2.2E-05 35.1 1.9 19 49-67 35-53 (266)
382 2v9p_A Replication protein E1; 81.4 0.82 2.8E-05 35.4 2.5 18 50-67 125-142 (305)
383 1mv5_A LMRA, multidrug resista 81.3 0.55 1.9E-05 34.8 1.5 18 50-67 27-44 (243)
384 1b0u_A Histidine permease; ABC 81.2 0.69 2.4E-05 34.8 2.0 18 50-67 31-48 (262)
385 2pcj_A ABC transporter, lipopr 81.2 0.83 2.8E-05 33.4 2.4 19 49-67 28-46 (224)
386 1xp8_A RECA protein, recombina 81.2 2.1 7.3E-05 33.8 4.9 38 51-91 74-111 (366)
387 3be4_A Adenylate kinase; malar 81.1 0.85 2.9E-05 32.9 2.4 18 51-68 5-22 (217)
388 3pxg_A Negative regulator of g 81.1 1.1 3.8E-05 36.5 3.4 25 51-76 201-225 (468)
389 1sxj_E Activator 1 40 kDa subu 81.1 0.9 3.1E-05 35.1 2.7 42 15-68 12-53 (354)
390 1g6h_A High-affinity branched- 81.1 0.88 3E-05 34.0 2.6 19 49-67 31-49 (257)
391 3aez_A Pantothenate kinase; tr 81.1 1.3 4.4E-05 34.2 3.6 19 50-68 89-107 (312)
392 1ji0_A ABC transporter; ATP bi 81.1 0.89 3E-05 33.6 2.6 18 50-67 31-48 (240)
393 3fmp_B ATP-dependent RNA helic 81.1 0.31 1.1E-05 39.6 0.0 68 82-154 333-406 (479)
394 2vli_A Antibiotic resistance p 81.1 0.58 2E-05 32.4 1.5 19 50-68 4-22 (183)
395 2ce7_A Cell division protein F 81.1 0.74 2.5E-05 37.9 2.3 55 11-68 10-66 (476)
396 2d2e_A SUFC protein; ABC-ATPas 81.0 0.7 2.4E-05 34.4 2.0 20 49-68 27-46 (250)
397 3nh6_A ATP-binding cassette SU 81.0 0.64 2.2E-05 35.9 1.8 26 50-77 79-104 (306)
398 3m6a_A ATP-dependent protease 81.0 0.8 2.7E-05 38.2 2.5 19 50-68 107-125 (543)
399 2zu0_C Probable ATP-dependent 81.0 0.71 2.4E-05 34.8 2.0 19 49-67 44-62 (267)
400 1ukz_A Uridylate kinase; trans 80.9 0.82 2.8E-05 32.3 2.2 17 52-68 16-32 (203)
401 2yz2_A Putative ABC transporte 80.9 0.73 2.5E-05 34.7 2.0 19 49-67 31-49 (266)
402 3tlx_A Adenylate kinase 2; str 80.9 0.9 3.1E-05 33.5 2.5 19 50-68 28-46 (243)
403 3rc3_A ATP-dependent RNA helic 80.8 5.5 0.00019 34.2 7.7 68 85-158 323-398 (677)
404 1vpl_A ABC transporter, ATP-bi 80.8 0.73 2.5E-05 34.6 2.0 19 49-67 39-57 (256)
405 2qi9_C Vitamin B12 import ATP- 80.7 0.72 2.5E-05 34.5 1.9 19 49-67 24-42 (249)
406 2jaq_A Deoxyguanosine kinase; 80.7 0.86 2.9E-05 32.0 2.3 15 53-67 2-16 (205)
407 1e4v_A Adenylate kinase; trans 80.5 0.86 2.9E-05 32.7 2.3 16 53-68 2-17 (214)
408 2ixe_A Antigen peptide transpo 80.5 0.76 2.6E-05 34.7 2.0 19 49-67 43-61 (271)
409 4a2p_A RIG-I, retinoic acid in 80.4 3.9 0.00013 33.3 6.4 99 61-161 370-483 (556)
410 3auy_A DNA double-strand break 80.4 0.78 2.7E-05 36.2 2.1 16 53-68 27-42 (371)
411 3f9v_A Minichromosome maintena 80.3 0.95 3.3E-05 38.2 2.7 15 53-67 329-343 (595)
412 2whx_A Serine protease/ntpase/ 80.3 5.2 0.00018 33.9 7.3 65 82-153 355-422 (618)
413 1htw_A HI0065; nucleotide-bind 80.1 0.72 2.5E-05 31.9 1.6 18 49-66 31-48 (158)
414 2olj_A Amino acid ABC transpor 80.1 0.8 2.7E-05 34.5 2.0 18 50-67 49-66 (263)
415 1sxj_C Activator 1 40 kDa subu 80.0 1.2 4E-05 34.5 3.0 16 53-68 48-63 (340)
416 3a4m_A L-seryl-tRNA(SEC) kinas 80.0 0.88 3E-05 33.9 2.2 18 51-68 4-21 (260)
417 1g41_A Heat shock protein HSLU 79.9 0.93 3.2E-05 37.0 2.5 18 51-68 50-67 (444)
418 2og2_A Putative signal recogni 79.9 1.6 5.5E-05 34.5 3.8 18 51-68 157-174 (359)
419 2pbr_A DTMP kinase, thymidylat 79.8 0.93 3.2E-05 31.5 2.2 16 53-68 2-17 (195)
420 2ihy_A ABC transporter, ATP-bi 79.7 0.8 2.7E-05 34.8 1.9 18 50-67 46-63 (279)
421 1q57_A DNA primase/helicase; d 79.6 1.8 6.2E-05 35.5 4.2 39 50-90 241-279 (503)
422 2oca_A DAR protein, ATP-depend 79.6 9.8 0.00033 30.8 8.6 79 83-166 348-433 (510)
423 2z0h_A DTMP kinase, thymidylat 79.6 0.97 3.3E-05 31.6 2.2 15 54-68 3-17 (197)
424 1rz3_A Hypothetical protein rb 79.4 0.94 3.2E-05 32.3 2.1 18 51-68 22-39 (201)
425 2nq2_C Hypothetical ABC transp 79.4 1.1 3.6E-05 33.6 2.5 19 49-67 29-47 (253)
426 2p5t_B PEZT; postsegregational 79.1 0.64 2.2E-05 34.5 1.2 18 51-68 32-49 (253)
427 2jeo_A Uridine-cytidine kinase 79.0 0.88 3E-05 33.5 1.9 19 50-68 24-42 (245)
428 3ice_A Transcription terminati 79.0 5.5 0.00019 32.1 6.6 30 39-68 159-191 (422)
429 4akg_A Glutathione S-transfera 78.6 1 3.4E-05 44.6 2.6 21 48-68 1264-1284(2695)
430 4a2w_A RIG-I, retinoic acid in 78.6 9.5 0.00032 33.9 8.7 99 61-161 611-724 (936)
431 3pxi_A Negative regulator of g 78.4 1.5 5.2E-05 37.9 3.5 25 51-76 201-225 (758)
432 1uf9_A TT1252 protein; P-loop, 78.2 1.1 3.6E-05 31.6 2.1 17 52-68 9-25 (203)
433 3qks_A DNA double-strand break 78.2 1.1 3.8E-05 32.1 2.2 16 53-68 25-40 (203)
434 2ffh_A Protein (FFH); SRP54, s 78.0 22 0.00076 28.6 10.0 17 52-68 99-115 (425)
435 3lda_A DNA repair protein RAD5 77.8 1.9 6.6E-05 34.5 3.7 26 10-35 80-105 (400)
436 2bbs_A Cystic fibrosis transme 77.8 0.99 3.4E-05 34.5 1.9 18 50-67 63-80 (290)
437 1z5z_A Helicase of the SNF2/RA 77.7 20 0.00067 26.8 10.0 93 59-158 92-192 (271)
438 1vht_A Dephospho-COA kinase; s 77.6 1.2 4E-05 32.0 2.2 17 52-68 5-21 (218)
439 2f1r_A Molybdopterin-guanine d 77.5 0.92 3.1E-05 31.8 1.6 16 53-68 4-19 (171)
440 2xb4_A Adenylate kinase; ATP-b 77.4 1.2 4.2E-05 32.2 2.3 16 53-68 2-17 (223)
441 3sr0_A Adenylate kinase; phosp 77.3 1.1 3.8E-05 32.4 2.0 16 53-68 2-17 (206)
442 1pzn_A RAD51, DNA repair and r 77.2 2.3 7.7E-05 33.3 3.9 19 52-70 132-150 (349)
443 2dhr_A FTSH; AAA+ protein, hex 77.2 1.1 3.9E-05 37.0 2.2 17 52-68 65-81 (499)
444 2yhs_A FTSY, cell division pro 77.0 2.2 7.4E-05 35.4 3.8 18 51-68 293-310 (503)
445 2z83_A Helicase/nucleoside tri 76.8 2.8 9.4E-05 34.0 4.4 66 82-154 190-258 (459)
446 1odf_A YGR205W, hypothetical 3 76.8 1.2 4.3E-05 33.9 2.2 17 52-68 32-48 (290)
447 1jr3_A DNA polymerase III subu 76.6 1.8 6E-05 33.5 3.1 17 52-68 39-55 (373)
448 1tf7_A KAIC; homohexamer, hexa 76.6 2.6 8.9E-05 34.8 4.3 40 48-90 278-317 (525)
449 2va8_A SSO2462, SKI2-type heli 76.6 10 0.00035 32.3 8.1 75 81-155 251-362 (715)
450 1ypw_A Transitional endoplasmi 76.6 1.1 3.7E-05 39.3 2.0 19 50-68 237-255 (806)
451 3fho_A ATP-dependent RNA helic 76.5 0.69 2.4E-05 38.0 0.8 72 81-157 356-433 (508)
452 2pjz_A Hypothetical protein ST 76.4 1.4 4.7E-05 33.2 2.4 18 51-68 30-47 (263)
453 1ltq_A Polynucleotide kinase; 76.3 1.3 4.4E-05 33.4 2.2 16 53-68 4-19 (301)
454 2vp4_A Deoxynucleoside kinase; 76.2 1.2 4.3E-05 32.3 2.0 18 50-67 19-36 (230)
455 4ehx_A Tetraacyldisaccharide 4 76.2 15 0.00053 28.2 8.3 102 53-157 37-157 (315)
456 3qkt_A DNA double-strand break 76.0 1.3 4.5E-05 34.4 2.2 16 54-69 26-41 (339)
457 3b5x_A Lipid A export ATP-bind 75.6 2.4 8.4E-05 35.5 3.9 18 50-67 368-385 (582)
458 2grj_A Dephospho-COA kinase; T 75.4 1.5 5.1E-05 31.3 2.2 17 52-68 13-29 (192)
459 1tf5_A Preprotein translocase 75.4 15 0.00052 32.4 8.8 72 82-159 432-516 (844)
460 3cr8_A Sulfate adenylyltranfer 75.3 3 0.0001 34.9 4.3 49 19-67 328-385 (552)
461 2onk_A Molybdate/tungstate ABC 75.1 1.5 5.1E-05 32.5 2.2 16 52-67 25-40 (240)
462 1q3t_A Cytidylate kinase; nucl 74.9 1.8 6E-05 31.6 2.6 19 50-68 15-33 (236)
463 3tqf_A HPR(Ser) kinase; transf 74.8 1.5 5.2E-05 31.2 2.1 19 50-68 15-33 (181)
464 4h1g_A Maltose binding protein 74.7 2.1 7.1E-05 36.9 3.3 25 44-68 454-480 (715)
465 1svm_A Large T antigen; AAA+ f 74.6 1.7 5.9E-05 34.6 2.6 18 50-67 168-185 (377)
466 3umf_A Adenylate kinase; rossm 74.5 1.4 4.6E-05 32.3 1.8 19 50-68 28-46 (217)
467 1r6b_X CLPA protein; AAA+, N-t 74.4 1.6 5.4E-05 37.7 2.5 18 51-68 207-224 (758)
468 3pxi_A Negative regulator of g 74.4 2.5 8.5E-05 36.6 3.7 16 53-68 523-538 (758)
469 1ko7_A HPR kinase/phosphatase; 74.3 6.9 0.00024 30.3 5.9 49 19-67 90-160 (314)
470 3ake_A Cytidylate kinase; CMP 74.2 1.7 5.7E-05 30.6 2.2 16 53-68 4-19 (208)
471 1uj2_A Uridine-cytidine kinase 74.2 1.6 5.6E-05 32.2 2.2 16 53-68 24-39 (252)
472 1fuu_A Yeast initiation factor 74.2 0.65 2.2E-05 36.2 0.0 72 81-157 258-335 (394)
473 1gtv_A TMK, thymidylate kinase 74.1 0.76 2.6E-05 32.7 0.4 14 54-67 3-16 (214)
474 3fvq_A Fe(3+) IONS import ATP- 73.9 1.4 4.9E-05 34.8 1.9 18 50-67 29-46 (359)
475 3sop_A Neuronal-specific septi 73.8 1.5 5.3E-05 33.0 2.0 15 53-67 4-18 (270)
476 1sxj_B Activator 1 37 kDa subu 73.4 1.9 6.4E-05 32.5 2.5 17 52-68 43-59 (323)
477 1sq5_A Pantothenate kinase; P- 73.4 1.5 5.2E-05 33.6 2.0 19 50-68 79-97 (308)
478 4a2q_A RIG-I, retinoic acid in 73.4 7 0.00024 33.9 6.3 97 61-159 611-722 (797)
479 4eaq_A DTMP kinase, thymidylat 73.3 1.4 4.8E-05 32.3 1.7 18 50-67 25-42 (229)
480 3gd7_A Fusion complex of cysti 73.0 1.5 5.3E-05 35.0 1.9 19 49-67 45-63 (390)
481 1r6b_X CLPA protein; AAA+, N-t 72.9 2.8 9.4E-05 36.2 3.7 16 53-68 490-505 (758)
482 2f6r_A COA synthase, bifunctio 72.9 1.7 5.8E-05 32.8 2.1 17 52-68 76-92 (281)
483 3cf2_A TER ATPase, transitiona 72.5 1.7 6E-05 38.1 2.3 17 52-68 239-255 (806)
484 1z47_A CYSA, putative ABC-tran 72.3 2.1 7.2E-05 33.8 2.6 19 49-67 39-57 (355)
485 2zj8_A DNA helicase, putative 72.2 13 0.00045 31.7 7.7 73 82-154 237-343 (720)
486 2h92_A Cytidylate kinase; ross 72.1 2.3 8E-05 30.3 2.6 18 51-68 3-20 (219)
487 2vhj_A Ntpase P4, P4; non- hyd 72.1 2.5 8.5E-05 33.1 2.9 21 50-70 122-142 (331)
488 2yyz_A Sugar ABC transporter, 72.0 2.2 7.4E-05 33.7 2.6 18 50-67 28-45 (359)
489 1qvr_A CLPB protein; coiled co 71.9 1.9 6.6E-05 37.9 2.5 27 42-68 571-605 (854)
490 3d31_A Sulfate/molybdate ABC t 71.7 2 6.8E-05 33.8 2.3 19 49-67 24-42 (348)
491 1pui_A ENGB, probable GTP-bind 71.7 1.8 6.2E-05 30.4 1.9 19 49-67 24-42 (210)
492 3vkg_A Dynein heavy chain, cyt 71.6 1.8 6.1E-05 43.6 2.3 20 47-66 1300-1319(3245)
493 2xxa_A Signal recognition part 71.5 23 0.00079 28.5 8.6 42 52-95 101-144 (433)
494 1ypw_A Transitional endoplasmi 71.5 0.88 3E-05 39.9 0.2 19 50-68 510-528 (806)
495 3rlf_A Maltose/maltodextrin im 71.5 1.8 6.2E-05 34.5 2.0 18 50-67 28-45 (381)
496 2rcn_A Probable GTPase ENGC; Y 71.5 5.6 0.00019 31.4 4.8 41 26-66 185-230 (358)
497 3r20_A Cytidylate kinase; stru 71.4 2.1 7.1E-05 31.7 2.2 18 51-68 9-26 (233)
498 2it1_A 362AA long hypothetical 71.2 2.3 7.8E-05 33.7 2.5 18 50-67 28-45 (362)
499 2p6r_A Afuhel308 helicase; pro 71.2 8.4 0.00029 32.8 6.3 74 82-155 242-346 (702)
500 3cmu_A Protein RECA, recombina 70.7 4.8 0.00016 39.0 4.9 46 50-99 1080-1125(2050)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1e-33 Score=215.68 Aligned_cols=166 Identities=22% Similarity=0.273 Sum_probs=148.9
Q ss_pred CCcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-----C
Q psy1539 6 GMFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----D 80 (175)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-----~ 80 (175)
+...+.+...|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++.++... .
T Consensus 21 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~ 100 (242)
T 3fe2_A 21 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 100 (242)
T ss_dssp SSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTT
T ss_pred CCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccC
Confidence 34457788999999999999999999999999999999999999999999999999999999999999988642 3
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVV 152 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~ 152 (175)
.+++++|++||++|+.|+.+.++++.... ++++..++||.+...+.+.+.++++++|++. +....++++++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 179 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 179 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccE
Confidence 57789999999999999999999999887 8999999999998888888999999999922 22567899999
Q ss_pred EEEeCCC----CCCHHHHHHHHhh
Q psy1539 153 NVMDVRS----GGWWLDLEALILS 172 (175)
Q Consensus 153 lVlDEad----~~f~~~v~~il~~ 172 (175)
+|+|||| .+|..+++.|+..
T Consensus 180 lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 180 LVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp EEETTHHHHHHTTCHHHHHHHHTT
T ss_pred EEEeCHHHHhhhCcHHHHHHHHHh
Confidence 9999994 6899999998764
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5e-33 Score=228.23 Aligned_cols=162 Identities=23% Similarity=0.322 Sum_probs=145.9
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-----CCCeE
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVY 84 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~ 84 (175)
+.+..+|++++|++.+++++.+.||..|||+|+++||.+++|+|+++++|||||||++|++|++.++... ..+++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 4567889999999999999999999999999999999999999999999999999999999999988643 24679
Q ss_pred EEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEe
Q psy1539 85 VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMD 156 (175)
Q Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlD 156 (175)
+||++|||+|+.|+++.++++.... ++++..++||.+...+.+.+.++++++|++ .+....+++++++|+|
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 9999999999999999999998876 889999999999888888898999999992 2225678999999999
Q ss_pred CC----CCCCHHHHHHHHhh
Q psy1539 157 VR----SGGWWLDLEALILS 172 (175)
Q Consensus 157 Ea----d~~f~~~v~~il~~ 172 (175)
|| +++|.++++.|+..
T Consensus 211 Eah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHC
T ss_pred cHhhhhccCcHHHHHHHHHh
Confidence 99 67899999999864
No 3
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2e-32 Score=203.18 Aligned_cols=158 Identities=25% Similarity=0.314 Sum_probs=141.8
Q ss_pred cccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 14 KVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
.+|+++++++++++++.+.||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.....+++++|++||++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876667789999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEeCCC----CC
Q psy1539 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMDVRS----GG 161 (175)
Q Consensus 94 L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlDEad----~~ 161 (175)
|+.|+.+.++++....+++++..++|+.+..++...+.++++++|++ .+....+++++++|+|||| .+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 99999999999988776889999999998888888888888999982 2224578899999999994 68
Q ss_pred CHHHHHHHHh
Q psy1539 162 WWLDLEALIL 171 (175)
Q Consensus 162 f~~~v~~il~ 171 (175)
|..+++.++.
T Consensus 163 ~~~~l~~i~~ 172 (206)
T 1vec_A 163 FVQIMEDIIL 172 (206)
T ss_dssp THHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999988875
No 4
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.5e-32 Score=206.52 Aligned_cols=164 Identities=25% Similarity=0.294 Sum_probs=138.8
Q ss_pred cccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEE
Q psy1539 8 FHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV 87 (175)
Q Consensus 8 ~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (175)
..+.+...|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.....+.+++|
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~li 97 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILI 97 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEE
Confidence 33456678999999999999999999999999999999999999999999999999999999999999876566789999
Q ss_pred EecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCC
Q psy1539 88 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad 159 (175)
++||++|+.|+.+.++++....+++++..++||.+..++.+.+. +++++|++. .....+++++++|+||||
T Consensus 98 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 98 LAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD 176 (230)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH
T ss_pred EeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch
Confidence 99999999999999999987766889999999988766666554 689999822 224567889999999993
Q ss_pred ----CC-CHHHHHHHHhh
Q psy1539 160 ----GG-WWLDLEALILS 172 (175)
Q Consensus 160 ----~~-f~~~v~~il~~ 172 (175)
.+ |.++++.|+..
T Consensus 177 ~~~~~~~~~~~~~~i~~~ 194 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSS 194 (230)
T ss_dssp HHHSTTSSHHHHHHHHHH
T ss_pred HhhcCcchHHHHHHHHHh
Confidence 55 99999988753
No 5
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=206.21 Aligned_cols=164 Identities=19% Similarity=0.257 Sum_probs=137.3
Q ss_pred Cccccccccccc-CCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC------
Q psy1539 7 MFHGVTVKVLSS-RNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT------ 79 (175)
Q Consensus 7 ~~~~~~~~~~~~-~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~------ 79 (175)
...+.+...|++ +++++++++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 12 ~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~ 91 (228)
T 3iuy_A 12 RLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQ 91 (228)
T ss_dssp CCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC--------
T ss_pred CcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhc
Confidence 345677888999 8999999999999999999999999999999999999999999999999999999887532
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCce
Q psy1539 80 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVV 151 (175)
Q Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~ 151 (175)
..+++++|++||++|+.|+.+.++++.. .++++..++||.+...+.+.+.++++++|++ .+....+++++
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 3567899999999999999999999863 3788999999998888888888899999992 22256788999
Q ss_pred EEEEeCC----CCCCHHHHHHHHhh
Q psy1539 152 VNVMDVR----SGGWWLDLEALILS 172 (175)
Q Consensus 152 ~lVlDEa----d~~f~~~v~~il~~ 172 (175)
++|+||| +.+|..+++.++..
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred EEEEECHHHHhccchHHHHHHHHHh
Confidence 9999999 46899999998754
No 6
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-32 Score=209.49 Aligned_cols=159 Identities=21% Similarity=0.272 Sum_probs=142.1
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC---------CCC
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT---------DSN 82 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---------~~~ 82 (175)
+..+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... ..+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 67789999999999999999999999999999999999999999999999999999999999987642 234
Q ss_pred eEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEE
Q psy1539 83 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNV 154 (175)
Q Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lV 154 (175)
+++||++||++|+.|+.+.++++.... ++++..++||.+...+.+.+.++++++|++ .+....+++++++|
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 689999999999999999999998776 888999999998888888888889999992 22246788999999
Q ss_pred EeCC----CCCCHHHHHHHHh
Q psy1539 155 MDVR----SGGWWLDLEALIL 171 (175)
Q Consensus 155 lDEa----d~~f~~~v~~il~ 171 (175)
+||| +.+|..+++.|+.
T Consensus 180 iDEah~~~~~~~~~~~~~i~~ 200 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIE 200 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHH
T ss_pred EeCHHHHHhCchHHHHHHHHh
Confidence 9999 4689999999986
No 7
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=207.75 Aligned_cols=161 Identities=27% Similarity=0.363 Sum_probs=143.9
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.+..+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.....+++++|++|
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 44677999999999999999999999999999999999999999999999999999999999999887667789999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------c-CccCCCCceEEEEeCCC--
Q psy1539 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------N-YETNLSGVVVNVMDVRS-- 159 (175)
Q Consensus 91 t~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~-~~~~~~~~~~lVlDEad-- 159 (175)
|++|+.|+.+.++++.... ++++..++||.+...+...+.++++++|++. + ....+++++++|+||||
T Consensus 120 tr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 9999999999999998877 8899999999988778888888899999921 1 24567899999999994
Q ss_pred --CCCHHHHHHHHhh
Q psy1539 160 --GGWWLDLEALILS 172 (175)
Q Consensus 160 --~~f~~~v~~il~~ 172 (175)
.+|..+++.|+..
T Consensus 199 ~~~~~~~~l~~i~~~ 213 (249)
T 3ber_A 199 LNMDFETEVDKILKV 213 (249)
T ss_dssp HHTTCHHHHHHHHHS
T ss_pred hccChHHHHHHHHHh
Confidence 6899999988753
No 8
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.7e-32 Score=206.51 Aligned_cols=162 Identities=27% Similarity=0.320 Sum_probs=131.9
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
+.+..+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.....+.+++|++
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 105 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLA 105 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999987655677999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcC-CCeEEEe--------ecCccCCCCceEEEEeCCC-
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH-NPQIVGL--------VNYETNLSGVVVNVMDVRS- 159 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~iiv~l--------~~~~~~~~~~~~lVlDEad- 159 (175)
||++|+.|+.+.++++.... ++++..++|+.....+.+.+.++ ++++|++ .+....+++++++|+||||
T Consensus 106 Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 106 PTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp SSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH
T ss_pred CcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH
Confidence 99999999999999998776 78888899998877777777666 7889882 2224667899999999995
Q ss_pred ---CCCHHHHHHHHhh
Q psy1539 160 ---GGWWLDLEALILS 172 (175)
Q Consensus 160 ---~~f~~~v~~il~~ 172 (175)
.+|..++..|+..
T Consensus 185 ~~~~~~~~~l~~i~~~ 200 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQK 200 (237)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHh
Confidence 6899999888753
No 9
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=214.79 Aligned_cols=158 Identities=23% Similarity=0.292 Sum_probs=137.8
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
+..+|++++|++.+++++.++||..||++|.++||.+++| +|+++++|||||||++|++|+++++.....++++||++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 4678999999999999999999999999999999999997 99999999999999999999999998777788999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe-------e-c-CccCCCCceEEEEeCCC-
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------V-N-YETNLSGVVVNVMDVRS- 159 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l-------~-~-~~~~~~~~~~lVlDEad- 159 (175)
|||+|+.|+++.++.+....+++++...+|+....... ..+++|+|++ + + ..+.+++++++|+||||
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 99999999999999998877789999999987654332 4567899992 1 2 24567899999999994
Q ss_pred ----CCCHHHHHHHHhh
Q psy1539 160 ----GGWWLDLEALILS 172 (175)
Q Consensus 160 ----~~f~~~v~~il~~ 172 (175)
.+|.+++..|+..
T Consensus 247 l~~~~~~~~~~~~i~~~ 263 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRM 263 (300)
T ss_dssp HHHSTTHHHHHHHHHTT
T ss_pred HhhccCcHHHHHHHHHh
Confidence 5888888887653
No 10
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-32 Score=204.85 Aligned_cols=160 Identities=22% Similarity=0.300 Sum_probs=138.5
Q ss_pred ccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 13 VKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 13 ~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
..+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.....+.+++|++||+
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 35799999999999999999999999999999999999999999999999999999999999987666678999999999
Q ss_pred HHHHHHHHHHHHHHhhCC---CeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCC--
Q psy1539 93 ELAFQISKEYERFSKYMS---NIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRS-- 159 (175)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~---~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad-- 159 (175)
+|+.|+.+.++++....+ ++++..++|+.+...+.+.+.++++++|++. +....+++++++|+||||
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 999999999999987653 5788889999877666666666788999822 224567899999999994
Q ss_pred --CCCHHHHHHHHhh
Q psy1539 160 --GGWWLDLEALILS 172 (175)
Q Consensus 160 --~~f~~~v~~il~~ 172 (175)
.+|..+++.++..
T Consensus 163 ~~~~~~~~l~~i~~~ 177 (219)
T 1q0u_A 163 LDMGFITDVDQIAAR 177 (219)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred hhhChHHHHHHHHHh
Confidence 6899999888754
No 11
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=1.2e-31 Score=201.04 Aligned_cols=165 Identities=52% Similarity=0.733 Sum_probs=138.8
Q ss_pred CcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEE
Q psy1539 7 MFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 86 (175)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~l 86 (175)
.+.+.....|+++++++++++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+....++.+++
T Consensus 7 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~l 86 (220)
T 1t6n_A 7 SYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL 86 (220)
T ss_dssp -------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEE
T ss_pred CcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEE
Confidence 34445556799999999999999999999999999999999999999999999999999999999999887655667999
Q ss_pred EEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcC-CCeEEEee--------cCccCCCCceEEEEeC
Q psy1539 87 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH-NPQIVGLV--------NYETNLSGVVVNVMDV 157 (175)
Q Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~iiv~l~--------~~~~~~~~~~~lVlDE 157 (175)
|++||++|+.|+.+.++++....+++++..++|+.+...+.+.+.++ ++++|++. +....+++++++|+||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 99999999999999999998877789999999999877777777654 58888822 2246788999999999
Q ss_pred CC-----CCCHHHHHHHHh
Q psy1539 158 RS-----GGWWLDLEALIL 171 (175)
Q Consensus 158 ad-----~~f~~~v~~il~ 171 (175)
|| .+|..++..++.
T Consensus 167 ah~~~~~~~~~~~~~~i~~ 185 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFR 185 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHH
T ss_pred HHHHhcccCcHHHHHHHHH
Confidence 94 467788887764
No 12
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=3e-31 Score=199.30 Aligned_cols=161 Identities=27% Similarity=0.332 Sum_probs=134.2
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
+.....|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.....+.+++|++
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 89 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999987666778999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEeCCC--
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMDVRS-- 159 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlDEad-- 159 (175)
||++|+.|+.+.++++.... ++++..++|+.+..++.+.+.+ ++++|++ .+....+++++++|+||||
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 167 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH
Confidence 99999999999999998776 8899999999887666666654 7899982 2235667899999999994
Q ss_pred --CCCHHHHHHHHhh
Q psy1539 160 --GGWWLDLEALILS 172 (175)
Q Consensus 160 --~~f~~~v~~il~~ 172 (175)
.+|..++..++..
T Consensus 168 ~~~~~~~~l~~i~~~ 182 (224)
T 1qde_A 168 LSSGFKEQIYQIFTL 182 (224)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHh
Confidence 6899888888753
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=212.86 Aligned_cols=165 Identities=25% Similarity=0.255 Sum_probs=145.4
Q ss_pred CCcccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC-----
Q psy1539 6 GMFHGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD----- 80 (175)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~----- 80 (175)
+...+.+..+|+++++++.+++++.+.||..|||+|.++||.+++|+|+++++|||||||++|++|+++.+....
T Consensus 7 ~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~ 86 (417)
T 2i4i_A 7 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 86 (417)
T ss_dssp STTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHH
T ss_pred CCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchh
Confidence 344567788899999999999999999999999999999999999999999999999999999999998875422
Q ss_pred -------------CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee------
Q psy1539 81 -------------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV------ 141 (175)
Q Consensus 81 -------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~------ 141 (175)
.+++++|++||++|+.|+++.++++.... ++++..++||.+..++.+.+.++++++|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~ 165 (417)
T 2i4i_A 87 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDM 165 (417)
T ss_dssp HHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHH
T ss_pred hccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHH
Confidence 23689999999999999999999998776 8999999999998888888888899999922
Q ss_pred --cCccCCCCceEEEEeCCC----CCCHHHHHHHHh
Q psy1539 142 --NYETNLSGVVVNVMDVRS----GGWWLDLEALIL 171 (175)
Q Consensus 142 --~~~~~~~~~~~lVlDEad----~~f~~~v~~il~ 171 (175)
.....+++++++|+|||| .+|..+++.++.
T Consensus 166 l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~ 201 (417)
T 2i4i_A 166 MERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 201 (417)
T ss_dssp HHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHT
T ss_pred HHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHH
Confidence 224678899999999994 689999999876
No 14
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=4.9e-31 Score=203.35 Aligned_cols=157 Identities=23% Similarity=0.257 Sum_probs=135.7
Q ss_pred ccccCC--CCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC----CCCeEEEEE
Q psy1539 15 VLSSRN--RREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYVLVM 88 (175)
Q Consensus 15 ~~~~~~--l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil 88 (175)
.|++++ +++++++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... .++.+++|+
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil 132 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLIL 132 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEE
Confidence 455665 99999999999999999999999999999999999999999999999999999987642 246789999
Q ss_pred ecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeec--------C-ccCCCCceEEEEeCC-
Q psy1539 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVN--------Y-ETNLSGVVVNVMDVR- 158 (175)
Q Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~--------~-~~~~~~~~~lVlDEa- 158 (175)
+||++|+.|+++.++++.... +..+..++|+.....+...+.++++++|++.. . ...+++++++|+|||
T Consensus 133 ~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 133 SPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp CSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred eCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 999999999999999998877 88899999999988888888888999999321 1 357889999999999
Q ss_pred ---CCCCHHHHHHHHhh
Q psy1539 159 ---SGGWWLDLEALILS 172 (175)
Q Consensus 159 ---d~~f~~~v~~il~~ 172 (175)
+.+|..+++.|+..
T Consensus 212 ~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKL 228 (262)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHh
Confidence 46899999998754
No 15
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=196.42 Aligned_cols=161 Identities=24% Similarity=0.303 Sum_probs=137.2
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC----CCCeEE
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYV 85 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~ 85 (175)
..+...|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 4567789999999999999999999999999999999999999999999999999999999999887532 346789
Q ss_pred EEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee----c----C-ccCCCCceEEEEe
Q psy1539 86 LVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV----N----Y-ETNLSGVVVNVMD 156 (175)
Q Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~----~----~-~~~~~~~~~lVlD 156 (175)
+|++||++|+.|+.+.++++.... ++++..++|+.+...+.+.+ .+++++|++. + . ...+.+++++|+|
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 999999999999999999998776 78999999998877666666 4689999921 1 1 3567899999999
Q ss_pred CC----CCCCHHHHHHHHhh
Q psy1539 157 VR----SGGWWLDLEALILS 172 (175)
Q Consensus 157 Ea----d~~f~~~v~~il~~ 172 (175)
|| +.+|..++..++..
T Consensus 179 Eah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 179 EADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp THHHHHHTTTHHHHHHHHHT
T ss_pred ChHHHhcCCcHHHHHHHHHh
Confidence 99 46899999888754
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=3e-30 Score=191.41 Aligned_cols=155 Identities=27% Similarity=0.346 Sum_probs=135.6
Q ss_pred ccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC---CCCeEEEEEecC
Q psy1539 15 VLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCHT 91 (175)
Q Consensus 15 ~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt 91 (175)
+|+++++++.+++++.+.||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+... ..+++++|++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999987642 356789999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCC----
Q psy1539 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRS---- 159 (175)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad---- 159 (175)
++|+.|+.+.++++.. .+++..++|+.....+.+.+.++++++|++. +....+++++++|+||||
T Consensus 82 ~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 9999999999988864 4678888999887788888888899999922 225678899999999994
Q ss_pred CCCHHHHHHHHhh
Q psy1539 160 GGWWLDLEALILS 172 (175)
Q Consensus 160 ~~f~~~v~~il~~ 172 (175)
.+|..+++.++..
T Consensus 159 ~~~~~~~~~i~~~ 171 (207)
T 2gxq_A 159 MGFEEEVEALLSA 171 (207)
T ss_dssp TTCHHHHHHHHHT
T ss_pred cchHHHHHHHHHh
Confidence 6899999888753
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=1.1e-29 Score=205.79 Aligned_cols=160 Identities=25% Similarity=0.329 Sum_probs=143.4
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.+..+|+++++++.+++++.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+.....+.++||++|
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 45678999999999999999999999999999999999999999999999999999999999998875556779999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEeCC----
Q psy1539 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMDVR---- 158 (175)
Q Consensus 91 t~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlDEa---- 158 (175)
|++|+.|+.+.++++.... ++++..++|+....++.+.+..+++++|++ .+....+.+++++|+|||
T Consensus 114 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHH
Confidence 9999999999999998877 899999999999888888888889999982 222566788999999999
Q ss_pred CCCCHHHHHHHHh
Q psy1539 159 SGGWWLDLEALIL 171 (175)
Q Consensus 159 d~~f~~~v~~il~ 171 (175)
+.+|...+..++.
T Consensus 193 ~~~~~~~~~~i~~ 205 (410)
T 2j0s_A 193 NKGFKEQIYDVYR 205 (410)
T ss_dssp STTTHHHHHHHHT
T ss_pred hhhhHHHHHHHHH
Confidence 4688898888865
No 18
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=197.14 Aligned_cols=166 Identities=22% Similarity=0.249 Sum_probs=135.7
Q ss_pred CCcccccccccccC----CCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-C
Q psy1539 6 GMFHGVTVKVLSSR----NRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-D 80 (175)
Q Consensus 6 ~~~~~~~~~~~~~~----~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-~ 80 (175)
+...+.+...|+++ ++++.+++++.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+... .
T Consensus 17 ~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~ 96 (245)
T 3dkp_A 17 GTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPAN 96 (245)
T ss_dssp SSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCS
T ss_pred CCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhccc
Confidence 34456777888887 899999999999999999999999999999999999999999999999999999988642 4
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH-HHHhcCCCeEEEe-------e-cC--ccCCCC
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE-EYLKTHNPQIVGL-------V-NY--ETNLSG 149 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~-~~l~~~~~iiv~l-------~-~~--~~~~~~ 149 (175)
.+++++|++||++|+.|+.+.++++.... ++++..++|+....... .....+++++|++ . +. ...+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 56789999999999999999999998876 88887777665332221 1223467899982 1 22 367889
Q ss_pred ceEEEEeCCC-------CCCHHHHHHHHhh
Q psy1539 150 VVVNVMDVRS-------GGWWLDLEALILS 172 (175)
Q Consensus 150 ~~~lVlDEad-------~~f~~~v~~il~~ 172 (175)
++++|+|||| .+|.+++..++..
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~ 205 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLA 205 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHH
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHh
Confidence 9999999994 5899999988753
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=2.1e-28 Score=197.48 Aligned_cols=160 Identities=28% Similarity=0.328 Sum_probs=136.3
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
.....+|+++++++.+++++.+.||..|+|+|.++++.+++|+++++.+|||+|||++|++|++..+.....+.+++|++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 96 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMV 96 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEc
Confidence 34556799999999999999999999999999999999999999999999999999999999999887655677899999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCCC-
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRSG- 160 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad~- 160 (175)
||++|+.|+.+.++++.... ++++..++|+.....+...+..+++++|++. +....+++++++|+||||.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 97 PTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 175 (400)
T ss_dssp SSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHh
Confidence 99999999999999998877 8899999999987777777777889999822 2245688999999999953
Q ss_pred ---CCHHHHHHHH
Q psy1539 161 ---GWWLDLEALI 170 (175)
Q Consensus 161 ---~f~~~v~~il 170 (175)
+|...++.++
T Consensus 176 ~~~~~~~~~~~i~ 188 (400)
T 1s2m_A 176 LSRDFKTIIEQIL 188 (400)
T ss_dssp SSHHHHHHHHHHH
T ss_pred hhhchHHHHHHHH
Confidence 4555555554
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.96 E-value=2.1e-28 Score=196.66 Aligned_cols=158 Identities=54% Similarity=0.757 Sum_probs=137.4
Q ss_pred cccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 14 KVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
..|+++++++.++++|.+.||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++..+.....+.++||++||++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 56999999999999999999999999999999999999999999999999999999999998876666779999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcC-CCeEEEee--------cCccCCCCceEEEEeCCC-----
Q psy1539 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH-NPQIVGLV--------NYETNLSGVVVNVMDVRS----- 159 (175)
Q Consensus 94 L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~iiv~l~--------~~~~~~~~~~~lVlDEad----- 159 (175)
|+.|+.+.++++....+++++..++|+.+...+.+.+.++ ++++|++. +....+++++++|+||||
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999998887789999999999887777777665 58888822 224568899999999994
Q ss_pred CCCHHHHHHHHh
Q psy1539 160 GGWWLDLEALIL 171 (175)
Q Consensus 160 ~~f~~~v~~il~ 171 (175)
.+|...+..++.
T Consensus 168 ~~~~~~~~~~~~ 179 (391)
T 1xti_A 168 LDMRRDVQEIFR 179 (391)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchHHHHHHHHh
Confidence 366677776654
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=7.3e-28 Score=194.82 Aligned_cols=161 Identities=27% Similarity=0.309 Sum_probs=141.3
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.....|+++++++.+++.+.+.||..|+++|.++++.+++|+|+++.+|||||||++|++|+++.+.....+.+++|++|
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 116 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAP 116 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeC
Confidence 44577999999999999999999999999999999999999999999999999999999999998876656778999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHh-cCCCeEEEe--------ecCccCCCCceEEEEeCCC--
Q psy1539 91 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK-THNPQIVGL--------VNYETNLSGVVVNVMDVRS-- 159 (175)
Q Consensus 91 t~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~-~~~~iiv~l--------~~~~~~~~~~~~lVlDEad-- 159 (175)
|++|+.|+.+.++++.... +..+...+|+.....+.+.+. .+++++|++ .+....+.+++++|+||||
T Consensus 117 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH
T ss_pred hHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh
Confidence 9999999999999998877 888999999998877777776 567888882 2224567889999999995
Q ss_pred --CCCHHHHHHHHhh
Q psy1539 160 --GGWWLDLEALILS 172 (175)
Q Consensus 160 --~~f~~~v~~il~~ 172 (175)
.+|...+..++..
T Consensus 196 ~~~~~~~~~~~~~~~ 210 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQK 210 (414)
T ss_dssp HHTTTHHHHHHHHTT
T ss_pred hccCcHHHHHHHHHh
Confidence 5888888888754
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=4.5e-28 Score=194.73 Aligned_cols=161 Identities=27% Similarity=0.333 Sum_probs=140.6
Q ss_pred ccccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEE
Q psy1539 9 HGVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 88 (175)
Q Consensus 9 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (175)
.......|+++++++.+++++.+.||..|+|+|.++++.+++|+++++.+|||+|||++|++|++..+.....+++++|+
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 95 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 95 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 34556779999999999999999999999999999999999999999999999999999999999988766667899999
Q ss_pred ecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEeCCC-
Q psy1539 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMDVRS- 159 (175)
Q Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlDEad- 159 (175)
+||++|+.|+.+.++++.... ++++..++|+.+..++...+. +++++|++ .+....+.+++++|+||||
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 96 APTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 999999999999999998776 889999999998777766665 47899982 2224567899999999994
Q ss_pred ---CCCHHHHHHHHh
Q psy1539 160 ---GGWWLDLEALIL 171 (175)
Q Consensus 160 ---~~f~~~v~~il~ 171 (175)
.+|...+..++.
T Consensus 174 ~~~~~~~~~~~~~~~ 188 (394)
T 1fuu_A 174 MLSSGFKEQIYQIFT 188 (394)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred hhCCCcHHHHHHHHH
Confidence 578888888764
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=2.1e-27 Score=190.59 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=131.4
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEE
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 88 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (175)
+..++|+++++++++++++.+.||..|+|+|.++++.+++| +++++++|||+|||++|++|++..+.....+.+++|+
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 81 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL 81 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE
Confidence 45688999999999999999999999999999999999998 9999999999999999999999998766677799999
Q ss_pred ecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe--------ecCccCCCCceEEEEeCCC-
Q psy1539 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL--------VNYETNLSGVVVNVMDVRS- 159 (175)
Q Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l--------~~~~~~~~~~~~lVlDEad- 159 (175)
+||++|+.|+.+.++++.... ++.+...+++...... ..+++++|++ .+....+++++++|+||||
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhh
Confidence 999999999999999998776 7888888877543222 2357899982 2235678899999999995
Q ss_pred ----CCCHHHHHHHHh
Q psy1539 160 ----GGWWLDLEALIL 171 (175)
Q Consensus 160 ----~~f~~~v~~il~ 171 (175)
.+|...+..++.
T Consensus 157 ~~~~~~~~~~~~~~~~ 172 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKR 172 (395)
T ss_dssp HHHSTTHHHHHHHHHH
T ss_pred hcCccccHHHHHHHHH
Confidence 677777776654
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=198.36 Aligned_cols=157 Identities=23% Similarity=0.311 Sum_probs=133.1
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
+..+|++++|++.+++++.++||..|+|+|.+++|.+++| +|+++++|||||||++|++|++..+.....++++||++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 3568999999999999999999999999999999999987 99999999999999999999999988766777999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE----eec-----CccCCCCceEEEEeCCC-
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVN-----YETNLSGVVVNVMDVRS- 159 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~-----~~~~~~~~~~lVlDEad- 159 (175)
||++|+.|+.+.++++....+++.+....++....... ..+++++|+ +.+ ..+.+++++++|+||||
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 99999999999999998877788888888876543322 335689998 211 14566899999999995
Q ss_pred ----CCCHHHHHHHHh
Q psy1539 160 ----GGWWLDLEALIL 171 (175)
Q Consensus 160 ----~~f~~~v~~il~ 171 (175)
.+|...+..++.
T Consensus 247 ~~~~~~~~~~~~~i~~ 262 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQR 262 (479)
T ss_dssp HHTSTTHHHHHHHHHT
T ss_pred HhhcCCcHHHHHHHHh
Confidence 577777776654
No 25
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=4.5e-27 Score=189.88 Aligned_cols=158 Identities=23% Similarity=0.289 Sum_probs=134.6
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEE
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 88 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (175)
...++|+++++++.+++++.+.||..|+|+|.++++.+++| +++++++|||+|||++|++|++..+.....+++++|+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 45678999999999999999999999999999999999987 9999999999999999999999998876677799999
Q ss_pred ecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------c-CccCCCCceEEEEeCCC
Q psy1539 89 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------N-YETNLSGVVVNVMDVRS 159 (175)
Q Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~-~~~~~~~~~~lVlDEad 159 (175)
+||++|+.|+.+.++++....+++.+....|+....... ..+++++|++. + ....+++++++|+||||
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 999999999999999998887788898888887644332 34568888821 1 24556889999999994
Q ss_pred -----CCCHHHHHHHHh
Q psy1539 160 -----GGWWLDLEALIL 171 (175)
Q Consensus 160 -----~~f~~~v~~il~ 171 (175)
.+|...+..++.
T Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQR 195 (412)
T ss_dssp HHHSTTTTHHHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHh
Confidence 578777776654
No 26
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=3.7e-27 Score=199.48 Aligned_cols=161 Identities=21% Similarity=0.269 Sum_probs=133.5
Q ss_pred cccccccCC-CCHHHHHHHhhCCCCCCcHHHHHhHHHHh--cCCcEEEEcCCCChHHHHHHHHHHHhhhcC----CCCeE
Q psy1539 12 TVKVLSSRN-RREKEDRIGESQPFREQTSFQHECIPQAV--LGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVY 84 (175)
Q Consensus 12 ~~~~~~~~~-l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~--~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~----~~~~~ 84 (175)
++..|.+.+ |++++++++.++||..|+|+|.++++.++ .|+|+++++|||+|||++|++|+++.+... ..+++
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 97 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK 97 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCC
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCe
Confidence 333443333 99999999999999999999999999999 789999999999999999999999988653 23568
Q ss_pred EEEEecCHHHHHHHHHHHHHHHhh---CCCeEEEEEECCCchHHhHHHHhc-CCCeEEEeecC---------ccCCCCce
Q psy1539 85 VLVMCHTRELAFQISKEYERFSKY---MSNIKVGVFFGGLPIQKDEEYLKT-HNPQIVGLVNY---------ETNLSGVV 151 (175)
Q Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~---~~~i~v~~~~g~~~~~~~~~~l~~-~~~iiv~l~~~---------~~~~~~~~ 151 (175)
+||++||++|+.|+.+.++++... .+.+.+..++|+.....+.+.+.+ +++|+|++... ...+++++
T Consensus 98 ~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~ 177 (579)
T 3sqw_A 98 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVD 177 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCC
T ss_pred EEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCC
Confidence 999999999999999999998753 246778889999988877777754 78999982221 34678999
Q ss_pred EEEEeCC----CCCCHHHHHHHHhh
Q psy1539 152 VNVMDVR----SGGWWLDLEALILS 172 (175)
Q Consensus 152 ~lVlDEa----d~~f~~~v~~il~~ 172 (175)
++|+||| +.+|.++++.|+..
T Consensus 178 ~lViDEah~l~~~gf~~~~~~i~~~ 202 (579)
T 3sqw_A 178 YKVLDEADRLLEIGFRDDLETISGI 202 (579)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred EEEEEChHHhhcCCCHHHHHHHHHH
Confidence 9999999 57899999988753
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.7e-26 Score=183.54 Aligned_cols=157 Identities=25% Similarity=0.366 Sum_probs=135.7
Q ss_pred ccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 13 VKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 13 ~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
..+|+++++++.+++++.+.||..|+|+|.++++.+++| +++++.+|||+|||++|++|++..+... ++.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 457999999999999999999999999999999999988 7999999999999999999999877543 46689999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCC----C
Q psy1539 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVR----S 159 (175)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEa----d 159 (175)
++|+.|+.+.++++.... ++++..++|+.....+...+. +++++|++. +....+++++++|+||| +
T Consensus 84 ~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp HHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 999999999999998765 888999999998777777666 579999822 22456789999999999 5
Q ss_pred CCCHHHHHHHHhh
Q psy1539 160 GGWWLDLEALILS 172 (175)
Q Consensus 160 ~~f~~~v~~il~~ 172 (175)
.+|...+..++..
T Consensus 162 ~~~~~~~~~~~~~ 174 (367)
T 1hv8_A 162 MGFIKDVEKILNA 174 (367)
T ss_dssp TTTHHHHHHHHHT
T ss_pred hchHHHHHHHHHh
Confidence 6788888887653
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=9.2e-27 Score=196.01 Aligned_cols=151 Identities=21% Similarity=0.272 Sum_probs=128.6
Q ss_pred CCHHHHHHHhhCCCCCCcHHHHHhHHHHh--cCCcEEEEcCCCChHHHHHHHHHHHhhhcCC----CCeEEEEEecCHHH
Q psy1539 21 RREKEDRIGESQPFREQTSFQHECIPQAV--LGMDILCQAKSGMGKTAVFVLATLQQLETTD----SNVYVLVMCHTREL 94 (175)
Q Consensus 21 l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~--~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~L 94 (175)
+++.+++++.+.||..|+|+|.++++.++ .|+|+++++|||||||++|++|+++.+.... .++++||++||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6799999999999999999999999886532 34689999999999
Q ss_pred HHHHHHHHHHHHhh---CCCeEEEEEECCCchHHhHHHHh-cCCCeEEEeecC---------ccCCCCceEEEEeCC---
Q psy1539 95 AFQISKEYERFSKY---MSNIKVGVFFGGLPIQKDEEYLK-THNPQIVGLVNY---------ETNLSGVVVNVMDVR--- 158 (175)
Q Consensus 95 ~~q~~~~~~~~~~~---~~~i~v~~~~g~~~~~~~~~~l~-~~~~iiv~l~~~---------~~~~~~~~~lVlDEa--- 158 (175)
+.|+.+.++++... .+...+..++|+.....+.+.+. .+++|+|++... ...+++++++|+|||
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999998653 23567888899988777777664 478999992222 346789999999999
Q ss_pred -CCCCHHHHHHHHh
Q psy1539 159 -SGGWWLDLEALIL 171 (175)
Q Consensus 159 -d~~f~~~v~~il~ 171 (175)
+.+|.++++.|+.
T Consensus 239 ~~~~f~~~~~~i~~ 252 (563)
T 3i5x_A 239 LEIGFRDDLETISG 252 (563)
T ss_dssp TSTTTHHHHHHHHH
T ss_pred hccchHHHHHHHHH
Confidence 5789999998864
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=1.2e-25 Score=176.88 Aligned_cols=144 Identities=25% Similarity=0.419 Sum_probs=125.1
Q ss_pred CCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHH
Q psy1539 21 RREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 100 (175)
Q Consensus 21 l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 100 (175)
|++++.+++.++||..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999874 4479999999999999999
Q ss_pred HHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCC----CCCHHHHHH
Q psy1539 101 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRS----GGWWLDLEA 168 (175)
Q Consensus 101 ~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad----~~f~~~v~~ 168 (175)
.++++.... +.++..++|+.....+.+.+.+ ++++|++. +....+.+++++|+|||| .+|..++..
T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 152 (337)
T 2z0m_A 75 HIRDIGRYM-DTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKI 152 (337)
T ss_dssp HHHHHTTTS-CCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHH
T ss_pred HHHHHhhhc-CCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHH
Confidence 999998776 8899999999987777777665 79999822 224567889999999994 678888888
Q ss_pred HHhh
Q psy1539 169 LILS 172 (175)
Q Consensus 169 il~~ 172 (175)
++..
T Consensus 153 ~~~~ 156 (337)
T 2z0m_A 153 ILAQ 156 (337)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7653
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.93 E-value=1.4e-25 Score=182.27 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=118.8
Q ss_pred HHHHHHhh-CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHH
Q psy1539 24 KEDRIGES-QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 102 (175)
Q Consensus 24 ~l~~~l~~-~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 102 (175)
++.+.+++ .|| .|+|+|.++++.+++|+|+++++|||||||++|++|++.... .+++++|++||++|+.|+.+.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHH
Confidence 34455555 356 799999999999999999999999999999999999888763 5668999999999999999999
Q ss_pred HHHHhhCCCeEEEEEECCCch---HHhHHHHhcC-CCeEEEeecC------ccCCCCceEEEEeCCC-------------
Q psy1539 103 ERFSKYMSNIKVGVFFGGLPI---QKDEEYLKTH-NPQIVGLVNY------ETNLSGVVVNVMDVRS------------- 159 (175)
Q Consensus 103 ~~~~~~~~~i~v~~~~g~~~~---~~~~~~l~~~-~~iiv~l~~~------~~~~~~~~~lVlDEad------------- 159 (175)
+++.. . ++++..++|+.+. ..+.+.+.++ ++++|++... ...+.+++++|+||||
T Consensus 85 ~~~~~-~-~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 85 QKLAD-E-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHHCC-S-SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHHcc-C-CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHH
Confidence 99877 4 8999999999987 5566777776 8999983322 3567899999999996
Q ss_pred --CCCHHH-HHHHHh
Q psy1539 160 --GGWWLD-LEALIL 171 (175)
Q Consensus 160 --~~f~~~-v~~il~ 171 (175)
.+|.++ ++.++.
T Consensus 163 ~~~~~~~~~~~~i~~ 177 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFS 177 (414)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHH
Confidence 899999 777764
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.90 E-value=8.3e-24 Score=183.00 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=125.1
Q ss_pred ccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 15 VLSSRNRREKEDRIGESQPFREQTSFQHECIPQ-AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 15 ~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~-~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
.|+++++++.+.+.+++.||..|+|+|.++++. +.+|+|+++++|||||||++|.+|+++.+.. ++.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--QGGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--HCSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCCEEEEEcCcHH
Confidence 488999999999999999999999999999998 8899999999999999999999999988764 2458999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCC----CC
Q psy1539 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRS----GG 161 (175)
Q Consensus 94 L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad----~~ 161 (175)
|+.|+.+.++++.. . ++++..++|+...... . ...++++|++. +....+++++++|+||++ ..
T Consensus 80 La~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK-I-GLRVAMATGDYDSKDE--W-LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD 154 (720)
T ss_dssp GHHHHHHHTGGGGG-G-TCCEEEECSCSSCCCG--G-GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT
T ss_pred HHHHHHHHHHHHHh-c-CCEEEEecCCCCcccc--c-cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc
Confidence 99999999976554 3 8899999998764432 1 23578999822 123447899999999996 36
Q ss_pred CHHHHHHHHhh
Q psy1539 162 WWLDLEALILS 172 (175)
Q Consensus 162 f~~~v~~il~~ 172 (175)
+...++.++..
T Consensus 155 r~~~~~~ll~~ 165 (720)
T 2zj8_A 155 RGATLEVILAH 165 (720)
T ss_dssp THHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 77777777643
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.90 E-value=1.9e-23 Score=187.37 Aligned_cols=135 Identities=15% Similarity=0.113 Sum_probs=116.0
Q ss_pred hCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
..|| .|||+|.+++|.+++|+|++++||||||||++|++|++..+. +++++||++||++|+.|+.+.++++. ..
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~~- 147 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-DE- 147 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-CT-
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-CC-
Confidence 4678 699999999999999999999999999999999888888763 56789999999999999999999976 44
Q ss_pred CeEEEEEECCCch---HHhHHHHhcC-CCeEEEeecC------ccCCCCceEEEEeCCC---------------CCCHHH
Q psy1539 111 NIKVGVFFGGLPI---QKDEEYLKTH-NPQIVGLVNY------ETNLSGVVVNVMDVRS---------------GGWWLD 165 (175)
Q Consensus 111 ~i~v~~~~g~~~~---~~~~~~l~~~-~~iiv~l~~~------~~~~~~~~~lVlDEad---------------~~f~~~ 165 (175)
++++..++|+.+. .++.+.+.++ ++++|++... ...+++++++|+|||| .||.++
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 8999999999987 6677788877 8999983332 3557899999999994 789999
Q ss_pred -HHHHHh
Q psy1539 166 -LEALIL 171 (175)
Q Consensus 166 -v~~il~ 171 (175)
++.|+.
T Consensus 228 ~i~~il~ 234 (1104)
T 4ddu_A 228 IIRKAFS 234 (1104)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 787775
No 33
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=3e-23 Score=179.27 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=125.4
Q ss_pred ccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 13 VKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQ-AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 13 ~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~-~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
..+|+++++++.+.+.+.+.||..|+|+|.++++. +.+|+|+++++|||||||++|.+|+++.+.. ++.+++|++|+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~il~i~P~ 84 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--NGGKAIYVTPL 84 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--SCSEEEEECSC
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--CCCeEEEEeCc
Confidence 35699999999999999999999999999999999 7789999999999999999999999988764 24599999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCCC---
Q psy1539 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRSG--- 160 (175)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad~--- 160 (175)
|+|+.|+.+.++.+.. . ++++..++|+....+. .+ .+++++|++. +....+++++++|+||+|.
T Consensus 85 r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~ 159 (715)
T 2va8_A 85 RALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND 159 (715)
T ss_dssp HHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC
T ss_pred HHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC
Confidence 9999999999865543 3 8899999998765433 12 3578999822 1234478999999999954
Q ss_pred -CCHHHHHHHHh
Q psy1539 161 -GWWLDLEALIL 171 (175)
Q Consensus 161 -~f~~~v~~il~ 171 (175)
.+...++.++.
T Consensus 160 ~~~~~~l~~i~~ 171 (715)
T 2va8_A 160 PERGPVVESVTI 171 (715)
T ss_dssp TTTHHHHHHHHH
T ss_pred cccchHHHHHHH
Confidence 67777777764
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.90 E-value=2.4e-23 Score=179.01 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=110.2
Q ss_pred HHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC--CCeEEEEEecCHHHHHHHHHHHH
Q psy1539 26 DRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD--SNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 26 ~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
.+++..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... .+.++||++||++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999998876543 23689999999999999999999
Q ss_pred HHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeec--------Ccc-CCCCceEEEEeCCCC
Q psy1539 104 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVN--------YET-NLSGVVVNVMDVRSG 160 (175)
Q Consensus 104 ~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~--------~~~-~~~~~~~lVlDEad~ 160 (175)
++.... ++++..++|+.+...+.+.+..+++++|++.. ... .+++++++|+||||.
T Consensus 83 ~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~ 147 (696)
T 2ykg_A 83 KYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 147 (696)
T ss_dssp HHTTTT-TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGG
T ss_pred HHhccC-CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCc
Confidence 998765 88999999998766677777778899999221 123 578899999999965
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.89 E-value=7e-24 Score=177.05 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=103.5
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g--~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
....+...++++.+++.+.+.||..|+++|.++++.+++| +++++++|||||||++|++|++..+.....+.++||++
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~ 196 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLA 196 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEEC
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 3444667788999999999999999999999999999998 99999999999999999999999987766677999999
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCC--
Q psy1539 90 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRS-- 159 (175)
Q Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad-- 159 (175)
|+++|+.|+.+.++++.... ++.+....++..... ...+++++|++. +....+++++++|+||+|
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~ 271 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNM 271 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTS-SCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHH
T ss_pred CcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhh
Confidence 99999999999999998765 666666555543221 233678999822 224568899999999994
Q ss_pred ---CCCHHHHHHHHh
Q psy1539 160 ---GGWWLDLEALIL 171 (175)
Q Consensus 160 ---~~f~~~v~~il~ 171 (175)
.+|...+..++.
T Consensus 272 ~~~~~~~~~~~~i~~ 286 (508)
T 3fho_A 272 LDQQGLGDQSMRIKH 286 (508)
T ss_dssp TTC--CHHHHHHHHH
T ss_pred cccCCcHHHHHHHHH
Confidence 577777777664
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.89 E-value=5.5e-23 Score=171.83 Aligned_cols=127 Identities=18% Similarity=0.119 Sum_probs=103.3
Q ss_pred CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC--CCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 33 PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD--SNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
+...|+|+|.++++.+++|+|+++++|||+|||++|++|+++.+.... .+.++||++||++|+.|+.+.++++....
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ- 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 345799999999999999999999999999999999999999887543 26789999999999999999999998877
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEEeec--------Ccc-CCCCceEEEEeCCCC
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVN--------YET-NLSGVVVNVMDVRSG 160 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~--------~~~-~~~~~~~lVlDEad~ 160 (175)
++++..++|+.+...+.+.+..+++++|++.. ... .+++++++|+||||.
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 141 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN 141 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGG
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcc
Confidence 89999999999877777777777899999222 234 688999999999953
No 37
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.89 E-value=7.6e-24 Score=182.79 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=120.2
Q ss_pred ccccCC--CCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 15 VLSSRN--RREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 15 ~~~~~~--l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
+|++++ +++.+.+.+++.||..|+|+|.++++.+.+|+|+++++|||||||++|.+|+++.+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 477888 9999999999999999999999999999999999999999999999999999988763 45899999999
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEee-------cC-ccCCCCceEEEEeCCCC----
Q psy1539 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV-------NY-ETNLSGVVVNVMDVRSG---- 160 (175)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~-------~~-~~~~~~~~~lVlDEad~---- 160 (175)
+|+.|+.+.++++.. . ++++..++|+....+. .+ .+++++|++. +. ...+++++++|+||++.
T Consensus 79 ~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~ 153 (702)
T 2p6r_A 79 ALAGEKYESFKKWEK-I-GLRIGISTGDYESRDE--HL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE 153 (702)
T ss_dssp HHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSS--CS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT
T ss_pred HHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchh--hc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCC
Confidence 999999999865543 3 8899999998764432 12 3578998832 22 33478999999999964
Q ss_pred CCHHHHHHHHh
Q psy1539 161 GWWLDLEALIL 171 (175)
Q Consensus 161 ~f~~~v~~il~ 171 (175)
++...++.++.
T Consensus 154 ~r~~~~~~ll~ 164 (702)
T 2p6r_A 154 KRGATLEILVT 164 (702)
T ss_dssp TTHHHHHHHHH
T ss_pred CcccHHHHHHH
Confidence 67777777654
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.89 E-value=8.4e-23 Score=170.40 Aligned_cols=124 Identities=17% Similarity=0.161 Sum_probs=107.8
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC--CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD--SNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
.|+|+|.++++.+++|+|+++++|||+|||++|++|+++.+.... .+.++||++||++|+.|+.+.++++.... +++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-CcE
Confidence 699999999999999999999999999999999999999887543 26789999999999999999999998877 899
Q ss_pred EEEEECCCchHHhHHHHhcCCCeEEEeecC--------cc-CCCCceEEEEeCCCC
Q psy1539 114 VGVFFGGLPIQKDEEYLKTHNPQIVGLVNY--------ET-NLSGVVVNVMDVRSG 160 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~--------~~-~~~~~~~lVlDEad~ 160 (175)
+..++|+.+...+.+.+..+++++|++... .. .+.+++++|+||||.
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 999999998777777777778999992221 23 678899999999964
No 39
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.89 E-value=1.8e-22 Score=169.16 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=116.9
Q ss_pred cccccCCCCHHHHHHHhh-CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 14 KVLSSRNRREKEDRIGES-QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~-~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
..|+++++++.+.+.|++ +||..|+|+|.++|+.+++|+|+++.+|||+|||++|.+|++.. ...++|++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 578999999999999998 89999999999999999999999999999999999999999853 23799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEEeec----C----ccCCCCceEEEEeCCC-
Q psy1539 93 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVGLVN----Y----ETNLSGVVVNVMDVRS- 159 (175)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~l~~----~----~~~~~~~~~lVlDEad- 159 (175)
+|+.|+.+.++.+ ++.+..+.|+.+..+... .+.+ ..+++++... . .+...++.++|+||||
T Consensus 76 aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~ 150 (523)
T 1oyw_A 76 SLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC 150 (523)
T ss_dssp HHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred HHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccc
Confidence 9999988888764 778888888877554432 2333 4677777221 1 3455799999999994
Q ss_pred ---CC--CHHHHHHH
Q psy1539 160 ---GG--WWLDLEAL 169 (175)
Q Consensus 160 ---~~--f~~~v~~i 169 (175)
.| |.++...+
T Consensus 151 i~~~g~~fr~~~~~l 165 (523)
T 1oyw_A 151 ISQWGHDFRPEYAAL 165 (523)
T ss_dssp GCTTSSCCCHHHHGG
T ss_pred cCcCCCccHHHHHHH
Confidence 23 77766543
No 40
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.88 E-value=1.3e-22 Score=172.18 Aligned_cols=141 Identities=15% Similarity=0.117 Sum_probs=115.1
Q ss_pred ccCCCCHHHHHHHhh-CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHH
Q psy1539 17 SSRNRREKEDRIGES-QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95 (175)
Q Consensus 17 ~~~~l~~~l~~~l~~-~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (175)
.++++++.+.+.|++ +||..|+|+|.++|+.+++|+|+++.+|||+|||++|.+|++.. ..++||++|+++|+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L~ 97 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISLM 97 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHHH
Confidence 458899999999998 69999999999999999999999999999999999999999753 23899999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHH------hcCCCeEEEeecC-------------ccCCCCceEEEEe
Q psy1539 96 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL------KTHNPQIVGLVNY-------------ETNLSGVVVNVMD 156 (175)
Q Consensus 96 ~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l------~~~~~iiv~l~~~-------------~~~~~~~~~lVlD 156 (175)
.|+.+.++++ ++++..+.|+.+..+....+ ..+.+++++.... ...+.++.++|+|
T Consensus 98 ~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViD 172 (591)
T 2v1x_A 98 EDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 172 (591)
T ss_dssp HHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEE
Confidence 9999988876 67888899988765443322 2457888882221 2346799999999
Q ss_pred CCC----CC--CHHHHHH
Q psy1539 157 VRS----GG--WWLDLEA 168 (175)
Q Consensus 157 Ead----~~--f~~~v~~ 168 (175)
||| .| |.+++..
T Consensus 173 EAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 173 EVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp TGGGGSTTCTTCCGGGGG
T ss_pred CcccccccccccHHHHHH
Confidence 994 34 7777654
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.88 E-value=2.5e-22 Score=173.61 Aligned_cols=133 Identities=13% Similarity=0.087 Sum_probs=111.2
Q ss_pred hCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
..|| .|||+|..++|.+++|+ +..++||+|||++|.+|++.... .+.+++|++||++||.|+.+++..+.+..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~l- 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFL- 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 5799 99999999999999999 89999999999999999985433 35589999999999999999999999988
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEEe---------ecC------ccCCCCceEEEEeCCC-----CC---------
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVGL---------VNY------ETNLSGVVVNVMDVRS-----GG--------- 161 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l---------~~~------~~~~~~~~~lVlDEad-----~~--------- 161 (175)
++++.+++||.+... +....+++|++|+ .++ ...++++.++|+|||| .+
T Consensus 152 gl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~ 229 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQ 229 (844)
T ss_dssp TCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEE
T ss_pred CCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCC
Confidence 999999999987543 3344578999992 222 3567899999999994 43
Q ss_pred ------CHHHHHHHHhh
Q psy1539 162 ------WWLDLEALILS 172 (175)
Q Consensus 162 ------f~~~v~~il~~ 172 (175)
|..+++.|+..
T Consensus 230 ~~~~~~~~~~i~~iv~~ 246 (844)
T 1tf5_A 230 AAKSTKLYVQANAFVRT 246 (844)
T ss_dssp EECCCHHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHh
Confidence 56788888754
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.87 E-value=4.7e-22 Score=173.81 Aligned_cols=129 Identities=18% Similarity=0.111 Sum_probs=104.4
Q ss_pred hCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC--CCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD--SNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
-.|+..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.... .+.++||++||++|+.|+.+.++++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 44688999999999999999999999999999999999999999887542 2668999999999999999999999887
Q ss_pred CCCeEEEEEECCCchHHhHHHHhcCCCeEEEeec--------Ccc-CCCCceEEEEeCCCC
Q psy1539 109 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVN--------YET-NLSGVVVNVMDVRSG 160 (175)
Q Consensus 109 ~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~--------~~~-~~~~~~~lVlDEad~ 160 (175)
. ++++..++|+.+...+.+.+..+++++|++.. ... .+++++++|+||||.
T Consensus 323 ~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~ 382 (797)
T 4a2q_A 323 Q-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN 382 (797)
T ss_dssp G-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGG
T ss_pred C-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccc
Confidence 7 89999999999877777777788999999221 233 677899999999963
No 43
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.87 E-value=1e-21 Score=170.74 Aligned_cols=132 Identities=23% Similarity=0.270 Sum_probs=111.0
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHH
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 97 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~~g------~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (175)
.+.+.+.+++| .||++|.++++.++++ +|+++++|||||||++|++|++..+.. +.+++|++||++|+.|
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQ 432 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHH
Confidence 44455678899 8999999999999875 699999999999999999999998764 4589999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEEECCCchHHh---HHHHhcC-CCeEEE---eecCccCCCCceEEEEeCCCC
Q psy1539 98 ISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTH-NPQIVG---LVNYETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 98 ~~~~~~~~~~~~~~i~v~~~~g~~~~~~~---~~~l~~~-~~iiv~---l~~~~~~~~~~~~lVlDEad~ 160 (175)
+++.++++.... ++++..++|+.+.++. .+.+.++ ++++|+ ++.....+++++++|+||+|.
T Consensus 433 ~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 433 HYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccch
Confidence 999999998877 8999999999876553 3445555 788888 333357789999999999964
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.87 E-value=1.1e-21 Score=175.65 Aligned_cols=136 Identities=16% Similarity=0.194 Sum_probs=112.2
Q ss_pred HhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 29 GESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
++.+||. | ++|.++||.+++|+|+++++|||||||+ |.+|++..+.. .+++++|++||++|+.|+.+.++++...
T Consensus 51 ~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 51 RKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp HTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3457999 9 9999999999999999999999999998 88999888764 5679999999999999999999999987
Q ss_pred CCCe----EEEEEECCCchHHh---HHHHhcCCCeEEE----eecCccCCCCceEEEEeCCCC--CCHHHHHHHHh
Q psy1539 109 MSNI----KVGVFFGGLPIQKD---EEYLKTHNPQIVG----LVNYETNLSGVVVNVMDVRSG--GWWLDLEALIL 171 (175)
Q Consensus 109 ~~~i----~v~~~~g~~~~~~~---~~~l~~~~~iiv~----l~~~~~~~~~~~~lVlDEad~--~f~~~v~~il~ 171 (175)
. ++ ++..++|+.+...+ .+.+.+ ++|+|+ +.+....+++++++|+||||. .|..+++.++.
T Consensus 126 ~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~~~~~~~~i~~ 199 (1054)
T 1gku_B 126 A-GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLH 199 (1054)
T ss_dssp T-CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHTSTHHHHHHHH
T ss_pred c-CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhhccccHHHHHH
Confidence 7 77 89999999887653 444555 899999 333333377999999999953 35567766654
No 45
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=4.7e-22 Score=147.62 Aligned_cols=130 Identities=21% Similarity=0.217 Sum_probs=100.7
Q ss_pred HhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC---CCCeEEEEEecCHHHHHH-HHHHHHH
Q psy1539 29 GESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCHTRELAFQ-ISKEYER 104 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt~~L~~q-~~~~~~~ 104 (175)
........|+++|.++++.+++++++++.+|||+|||++++.+++..+... ..+.+++|++|+++|+.| +.+.+++
T Consensus 26 ~~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 26 ASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp TCCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 344445689999999999999999999999999999999999998876532 235689999999999999 7788888
Q ss_pred HHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecC--------------ccCCCCceEEEEeCCCC
Q psy1539 105 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY--------------ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 105 ~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~--------------~~~~~~~~~lVlDEad~ 160 (175)
+... ++++..+.|+.........+.++++++|+..+. ...+.+++++|+||||.
T Consensus 106 ~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~ 173 (216)
T 3b6e_A 106 FLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 173 (216)
T ss_dssp HHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--
T ss_pred Hhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchh
Confidence 8764 678888888877666665565678999982222 14567899999999964
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.85 E-value=1.9e-21 Score=172.52 Aligned_cols=129 Identities=19% Similarity=0.128 Sum_probs=102.8
Q ss_pred hCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC--CCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD--SNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
-.|+..|+|+|.++++.+++|+|+++.+|||+|||++|++|++..+.... .+.++||++||++|+.|+.+.++++...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 34677899999999999999999999999999999999999998876542 1568999999999999999999999887
Q ss_pred CCCeEEEEEECCCchHHhHHHHhcCCCeEEEe----e----cCcc-CCCCceEEEEeCCCC
Q psy1539 109 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL----V----NYET-NLSGVVVNVMDVRSG 160 (175)
Q Consensus 109 ~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l----~----~~~~-~~~~~~~lVlDEad~ 160 (175)
. ++++..++|+.+...+.+.+..+++++|++ . +... .+++++++|+||||.
T Consensus 323 ~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~ 382 (936)
T 4a2w_A 323 Q-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN 382 (936)
T ss_dssp T-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGG
T ss_pred c-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccc
Confidence 6 899999999987766666676778999992 1 1223 577899999999963
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.85 E-value=1.7e-21 Score=168.24 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=101.3
Q ss_pred CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.|. .|+++|..++|.+++|+ +..++||||||++|.+|++.... .+.+++|++||++||.|+.+++..+.+.+ +
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~l-g 143 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEFL-G 143 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHhc-C
Confidence 454 79999999999999998 89999999999999999986544 35689999999999999999999999998 9
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEEee---------cC------ccCCCCceEEEEeCCC
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVGLV---------NY------ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~---------~~------~~~~~~~~~lVlDEad 159 (175)
+++..++||.+.. .+.+..+++|+||+. ++ ...+++++++|+||||
T Consensus 144 l~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD 204 (853)
T 2fsf_A 144 LTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVD 204 (853)
T ss_dssp CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHH
T ss_pred CeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchH
Confidence 9999999998753 444555789999932 11 2566899999999994
No 48
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-21 Score=175.47 Aligned_cols=143 Identities=19% Similarity=0.105 Sum_probs=116.8
Q ss_pred cccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 14 KVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 14 ~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
..|+..++++.+...+.+.++..|+|+|.++++.+.+|+|+++++|||||||++|.+|++..+. .+.+++|++||++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHH
Confidence 3567788888888888777777899999999999999999999999999999999999999875 3558999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeec--------CccCCCCceEEEEeCCCC----C
Q psy1539 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVN--------YETNLSGVVVNVMDVRSG----G 161 (175)
Q Consensus 94 L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~--------~~~~~~~~~~lVlDEad~----~ 161 (175)
|+.|+++.++++.. .++.++|+.+.. .+++++|++.. ....+++++++|+||||+ +
T Consensus 239 La~Q~~~~l~~~~~-----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~ 306 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE 306 (1108)
T ss_dssp HHHHHHHHHHHHTS-----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH
T ss_pred HHHHHHHHHHHHhC-----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc
Confidence 99999999888753 577788988743 34789998322 234477899999999964 5
Q ss_pred CHHHHHHHHh
Q psy1539 162 WWLDLEALIL 171 (175)
Q Consensus 162 f~~~v~~il~ 171 (175)
|...++.++.
T Consensus 307 rg~~~e~ii~ 316 (1108)
T 3l9o_A 307 RGVVWEETII 316 (1108)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 6666776654
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.84 E-value=8.5e-21 Score=175.80 Aligned_cols=145 Identities=19% Similarity=0.122 Sum_probs=114.5
Q ss_pred CCHHHHHHHhhCCCCCCcHHHHHhHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH
Q psy1539 21 RREKEDRIGESQPFREQTSFQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99 (175)
Q Consensus 21 l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~-g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (175)
|+++..+++.+.+|+.++|+|.++++.+++ ++|++++||||||||++|.+|+++.+... ++.+++|++|+|+||.|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHHHH
Confidence 456788899999999999999999999986 58899999999999999999999998764 3458999999999999999
Q ss_pred HHHHHH-HhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEe-------ecC---ccCCCCceEEEEeCCCC---CCHHH
Q psy1539 100 KEYERF-SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGL-------VNY---ETNLSGVVVNVMDVRSG---GWWLD 165 (175)
Q Consensus 100 ~~~~~~-~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l-------~~~---~~~~~~~~~lVlDEad~---~f~~~ 165 (175)
+.+++. .+.. ++++..++|+.+. +.+.+. +++|+|++ .++ ...+++++++|+||+|+ .....
T Consensus 990 ~~~~~~f~~~~-g~~V~~ltGd~~~--~~~~~~-~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRL-NKKVVLLTGETST--DLKLLG-KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPV 1065 (1724)
T ss_dssp HHHHHHHTTTS-CCCEEECCSCHHH--HHHHHH-HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHH
T ss_pred HHHHHHhchhc-CCEEEEEECCCCc--chhhcC-CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCcc
Confidence 998764 4445 8999999998753 333343 46999992 222 23467899999999952 34444
Q ss_pred HHHHH
Q psy1539 166 LEALI 170 (175)
Q Consensus 166 v~~il 170 (175)
++.++
T Consensus 1066 le~il 1070 (1724)
T 4f92_B 1066 LEVIC 1070 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.84 E-value=6e-21 Score=165.34 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=110.1
Q ss_pred hCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
..|+ .|+++|..++|.+++|+ +..++||+|||++|.+|++..... +.+++|++||++||.|..+++..+.+.+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~l- 179 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFL- 179 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 4688 89999999999999998 999999999999999999754432 4579999999999999999999999998
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEEee---------cC------ccCCCCceEEEEeCCCC---------------
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV---------NY------ETNLSGVVVNVMDVRSG--------------- 160 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~---------~~------~~~~~~~~~lVlDEad~--------------- 160 (175)
++++++++||.+... +....+++|++|+. ++ ...++++.++|+||||.
T Consensus 180 GLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~ 257 (922)
T 1nkt_A 180 GLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGP 257 (922)
T ss_dssp TCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEE
T ss_pred CCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCC
Confidence 999999999987543 33444689999922 22 35678999999999952
Q ss_pred -----CCHHHHHHHHhh
Q psy1539 161 -----GWWLDLEALILS 172 (175)
Q Consensus 161 -----~f~~~v~~il~~ 172 (175)
+|..+++.|+..
T Consensus 258 ~~~~~~~y~~i~~iv~~ 274 (922)
T 1nkt_A 258 ADGASNWYTEFARLAPL 274 (922)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHh
Confidence 466788888754
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.83 E-value=2e-20 Score=173.32 Aligned_cols=123 Identities=19% Similarity=0.238 Sum_probs=103.1
Q ss_pred CCCCCcHHHHHhHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHhhhcC--------CCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 33 PFREQTSFQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLETT--------DSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~~-g~~~ii~a~TGsGKT~~~~~~~l~~l~~~--------~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
||++++++|++++|.+++ ++|++++||||||||++|.+|+++.+... .++.+++|++|+|+|++|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999998875 79999999999999999999999988642 346799999999999999999999
Q ss_pred HHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-------eecC---ccCCCCceEEEEeCCC
Q psy1539 104 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-------LVNY---ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 104 ~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-------l~~~---~~~~~~~~~lVlDEad 159 (175)
+..+.. |++|..++|+.+..... ..+++|+|+ +.++ ...+++++++|+||++
T Consensus 156 ~~~~~~-gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH 217 (1724)
T 4f92_B 156 KRLATY-GITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIH 217 (1724)
T ss_dssp HHHTTT-TCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGG
T ss_pred HHHhhC-CCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecch
Confidence 888877 99999999998754321 245799999 2332 2246799999999993
No 52
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=5e-20 Score=159.57 Aligned_cols=120 Identities=17% Similarity=0.023 Sum_probs=101.1
Q ss_pred hCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
..|+ .|+++|..++|.+++|+ +..+.||+|||++|.+|++.... .+.+++|++||++||.|.++++..+.+.+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 3688 89999999999999999 89999999999999999965443 24579999999999999999999999988
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEEee---------cC------ccCCC---CceEEEEeCCC
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV---------NY------ETNLS---GVVVNVMDVRS 159 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~---------~~------~~~~~---~~~~lVlDEad 159 (175)
++++.+++||.+.+ .+....+++|++|+. ++ ...++ ++.++|+||+|
T Consensus 148 GLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 148 GLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp TCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred CCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 99999999998743 344445789999921 11 24577 89999999996
No 53
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.82 E-value=6.1e-20 Score=152.76 Aligned_cols=132 Identities=15% Similarity=0.199 Sum_probs=108.3
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEE
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 114 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v 114 (175)
..|+|+|.++++.+++++++++++|||+|||++|+.++...+.. ...+++|++||++|+.|+.+.++++... ++.++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v 188 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLF-SHAMI 188 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSS-CGGGE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcC-Cccce
Confidence 37999999999999999999999999999999999999887754 2348999999999999999999888544 36788
Q ss_pred EEEECCCchHHhHHHHhcCCCeEEEeecC-----ccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 115 GVFFGGLPIQKDEEYLKTHNPQIVGLVNY-----ETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 115 ~~~~g~~~~~~~~~~l~~~~~iiv~l~~~-----~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
..++|+.+..++ +..+.+++|++.+. ...+++++++|+||++.....+.+.++..
T Consensus 189 ~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~~~il~~ 248 (510)
T 2oca_A 189 KKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISG 248 (510)
T ss_dssp EECGGGCCTTGG---GCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHGGG
T ss_pred EEEecCCccccc---cccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcccHHHHHHh
Confidence 888888775544 34567899983332 35578899999999988777888887654
No 54
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.81 E-value=5.9e-20 Score=142.45 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=103.4
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.|+++|.++++.++++.+.++++|||+|||++++.++...+.. +..++||++||++|+.|+.+.++++.... ...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~ 189 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhcccc-cceEE
Confidence 7999999999999988889999999999999998888776653 23389999999999999999999886543 66777
Q ss_pred EEECCCchHHhHHHHhcCCCeEEEeecC-----ccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVGLVNY-----ETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~l~~~-----~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
.++||..... ....+.+++|++.+. ...+++++++|+||||....+.++.++..
T Consensus 190 ~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~il~~ 248 (282)
T 1rif_A 190 KIGGGASKDD---KYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISG 248 (282)
T ss_dssp ECSTTCSSTT---CCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTT
T ss_pred EEeCCCcchh---hhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcccHHHHHHH
Confidence 7888765332 122357888883322 33567899999999987777778777664
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.81 E-value=6.8e-19 Score=158.69 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=114.6
Q ss_pred CCCCHHHHHHH-hhCCCCCCcHHHHHhHHHHhc----CC--cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 19 RNRREKEDRIG-ESQPFREQTSFQHECIPQAVL----GM--DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 19 ~~l~~~l~~~l-~~~g~~~~t~~Q~~~i~~~~~----g~--~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
++.++...+.+ ..++|. +||+|.++++.+++ |+ |+++++|||+|||++|+.+++..+. .+.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEech
Confidence 45566666665 455775 69999999999886 65 9999999999999999988887654 35599999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHh---HHHHhcC-CCeEEE---eecCccCCCCceEEEEeCCCCCCHH
Q psy1539 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTH-NPQIVG---LVNYETNLSGVVVNVMDVRSGGWWL 164 (175)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~---~~~l~~~-~~iiv~---l~~~~~~~~~~~~lVlDEad~~f~~ 164 (175)
++|+.|+++.+++..... ++++..+.|..+.++. .+.+.++ ++++|+ +++....+++++++|+||+|. |..
T Consensus 662 ~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~-~g~ 739 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHR-FGV 739 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGG-SCH
T ss_pred HHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHh-cCh
Confidence 999999999999887766 7888888887664443 3445554 788988 444567889999999999975 444
Q ss_pred HHHHHHh
Q psy1539 165 DLEALIL 171 (175)
Q Consensus 165 ~v~~il~ 171 (175)
+.+.++.
T Consensus 740 ~~~~~l~ 746 (1151)
T 2eyq_A 740 RHKERIK 746 (1151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=161.33 Aligned_cols=123 Identities=22% Similarity=0.233 Sum_probs=100.0
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC---CCCeEEEEEecCHHHHHHH-HHHHHHHHhhCCC
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCHTRELAFQI-SKEYERFSKYMSN 111 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt~~L~~q~-~~~~~~~~~~~~~ 111 (175)
.|+|+|.++++.+++|+|+++.+|||+|||++|++|++..+... ..+.++||++|+++|+.|+ .+.++++... +
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--~ 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--W 84 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--T
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--C
Confidence 68999999999999999999999999999999999999887643 2235899999999999999 9999998764 4
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEE----ee----------cCccCCCCceEEEEeCCCC
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVG----LV----------NYETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~----------~~~~~~~~~~~lVlDEad~ 160 (175)
+++..++|+....+....+..+.+++|+ +. .....+.+++++|+||||.
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~ 147 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 147 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc
Confidence 8899999998777666777778899998 21 1235678899999999963
No 57
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.7e-19 Score=158.58 Aligned_cols=127 Identities=22% Similarity=0.212 Sum_probs=102.9
Q ss_pred HhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 29 GESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
....+|. |+|+|.++++.+.+|+++++++|||||||++|.+|++..+. .+.+++|++||++|+.|+++.++++..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 4455675 99999999999999999999999999999999999998875 346999999999999999999888763
Q ss_pred CCCeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCC----CCCHHHHHHHHh
Q psy1539 109 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRS----GGWWLDLEALIL 171 (175)
Q Consensus 109 ~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad----~~f~~~v~~il~ 171 (175)
+++.++|+.+... .++++|++. +....+++++++|+||+| .++....+.++.
T Consensus 155 ----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 155 ----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp ----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred ----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 5778889886543 468888832 224567899999999995 456666665543
No 58
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=1.5e-18 Score=141.57 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=98.2
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.|+|+|.++++.++++ ++++.+|||+|||++++.+++..+. ..+.++||++|+++|+.|+.+.++++... +..++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~ 84 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIV 84 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCc-chhheE
Confidence 6899999999999999 9999999999999999999988776 24558999999999999999999988632 255888
Q ss_pred EEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCCC
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad~ 160 (175)
.++|+....+....+ .+++++|+.. .....+.+++++|+|||+.
T Consensus 85 ~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~ 136 (494)
T 1wp9_A 85 ALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136 (494)
T ss_dssp EECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGG
T ss_pred EeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcc
Confidence 999988765544443 3578999822 2245678999999999964
No 59
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.78 E-value=5e-19 Score=157.60 Aligned_cols=127 Identities=18% Similarity=0.235 Sum_probs=100.7
Q ss_pred hCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 31 SQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 31 ~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
..+| .|+++|.++++.+++|+|+++.+|||||||++|.+|+...+. .+.+++|++|+++|+.|+++.++++. +
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~---~ 107 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETF---D 107 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHc---C
Confidence 4456 489999999999999999999999999999999999987754 45689999999999999988887654 3
Q ss_pred CeEEEEEECCCchHHhHHHHhcCCCeEEEee--------cCccCCCCceEEEEeCCC----CCCHHHHHHHHh
Q psy1539 111 NIKVGVFFGGLPIQKDEEYLKTHNPQIVGLV--------NYETNLSGVVVNVMDVRS----GGWWLDLEALIL 171 (175)
Q Consensus 111 ~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~--------~~~~~~~~~~~lVlDEad----~~f~~~v~~il~ 171 (175)
++++..++|+.+... ..+++|++. .....+++++++|+|||| .+|....+.++.
T Consensus 108 ~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 108 DVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp -CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred CCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 678999999886443 368888822 224457899999999994 456666666654
No 60
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=128.50 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=90.2
Q ss_pred CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCC--CeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS--NVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
...++++|.++++.+.+|++++++||||||||+++.++++........ +.++++++|+++++.|+.+.+........+
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 345799999999999999999999999999999999999887654332 458999999999999998877665432213
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEEee----cC-ccCCCCceEEEEeCCCC-CCHHH
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVGLV----NY-ETNLSGVVVNVMDVRSG-GWWLD 165 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~----~~-~~~~~~~~~lVlDEad~-~f~~~ 165 (175)
..++.-...... ....+++++|++. +. ...+++++++|+||||. ++..+
T Consensus 139 ~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~ 193 (235)
T 3llm_A 139 KSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTD 193 (235)
T ss_dssp SSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHH
T ss_pred ceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchH
Confidence 344332221110 0113467888833 22 22589999999999975 34433
No 61
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.73 E-value=1.2e-17 Score=137.62 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=85.8
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE-E
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK-V 114 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~-v 114 (175)
.|+|+|.++++.+++++++++++|||+|||++|+.++... +.++||++|+++|+.|+.+.++++ +++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v 161 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYV 161 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG-----CGGGE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC-----CCcce
Confidence 5899999999999999999999999999999999988764 347999999999999988888773 677 8
Q ss_pred EEEECCCchHHhHHHHhcCCCeEEEeecC----c-cCCCCceEEEEeCCCC
Q psy1539 115 GVFFGGLPIQKDEEYLKTHNPQIVGLVNY----E-TNLSGVVVNVMDVRSG 160 (175)
Q Consensus 115 ~~~~g~~~~~~~~~~l~~~~~iiv~l~~~----~-~~~~~~~~lVlDEad~ 160 (175)
..++|+.+. ..+++|++.+. . ....+++++|+||++.
T Consensus 162 ~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 162 GEFSGRIKE---------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHH 203 (472)
T ss_dssp EEBSSSCBC---------CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGG
T ss_pred EEECCCcCC---------cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcC
Confidence 888887652 36888883332 1 1125699999999954
No 62
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=4.7e-17 Score=123.45 Aligned_cols=115 Identities=18% Similarity=0.122 Sum_probs=88.3
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE-E
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK-V 114 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~-v 114 (175)
.|+++|.++++.+++++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.++++ +++ +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~-----~~~~v 161 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYV 161 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG-----CGGGE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC-----CCCeE
Confidence 6899999999999999999999999999999988877653 347999999999999988887763 566 7
Q ss_pred EEEECCCchHHhHHHHhcCCCeEEEeecC-----ccCCCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 115 GVFFGGLPIQKDEEYLKTHNPQIVGLVNY-----ETNLSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 115 ~~~~g~~~~~~~~~~l~~~~~iiv~l~~~-----~~~~~~~~~lVlDEad~~f~~~v~~il 170 (175)
..+.|+... ..+++|++.+. .....+++++|+||++.......+.++
T Consensus 162 ~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~ 213 (237)
T 2fz4_A 162 GEFSGRIKE---------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIA 213 (237)
T ss_dssp EEESSSCBC---------CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHHHH
T ss_pred EEEeCCCCC---------cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHHHH
Confidence 777776642 46888883332 112256899999999765444444443
No 63
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.71 E-value=1.1e-18 Score=148.76 Aligned_cols=135 Identities=11% Similarity=0.015 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHH
Q psy1539 19 RNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 98 (175)
Q Consensus 19 ~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (175)
+++++.+.+++... ...++|+|+.++|.+++|+|+++++|||||||++|++|+++.+.. ++.++||++|||+|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHH
Confidence 56777777777764 478999999999999999999999999999999999999998765 457899999999999998
Q ss_pred HHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-eecC--------ccCCCCceEEEEeCCCCC---CHHHH
Q psy1539 99 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-LVNY--------ETNLSGVVVNVMDVRSGG---WWLDL 166 (175)
Q Consensus 99 ~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-l~~~--------~~~~~~~~~lVlDEad~~---f~~~v 166 (175)
.+.++ +..+. +.++. .. .. ..+.-++- +... ...+++++++|+||||.. |..++
T Consensus 232 ~~~l~-------~~~v~-~~~~~-l~----~~-~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~ 297 (618)
T 2whx_A 232 EEALR-------GLPIR-YQTPA-VK----SD-HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAAR 297 (618)
T ss_dssp HHHTT-------TSCEE-ECCTT-SS----CC-CCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHH
T ss_pred HHHhc-------CCcee-Eeccc-ce----ec-cCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHH
Confidence 87765 22232 22211 00 00 11111221 1111 234789999999999753 55555
Q ss_pred HHHH
Q psy1539 167 EALI 170 (175)
Q Consensus 167 ~~il 170 (175)
..|+
T Consensus 298 ~~i~ 301 (618)
T 2whx_A 298 GYIS 301 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 64
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.70 E-value=4.1e-18 Score=140.36 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=81.5
Q ss_pred CCCCCcHHHHHhHHHHhcCCcE-EEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 33 PFREQTSFQHECIPQAVLGMDI-LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~~g~~~-ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
|+..|+|+|+ ++|.+++|+++ ++++|||||||++|++|++..+.. .+.+++|++|||+|+.|+.+.+. +
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~-------g 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALR-------G 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT-------T
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhc-------C
Confidence 7889999985 79999999877 999999999999999999987664 45689999999999999988774 3
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEE----eecC---ccCCCCceEEEEeCCCCC
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVG----LVNY---ETNLSGVVVNVMDVRSGG 161 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~----l~~~---~~~~~~~~~lVlDEad~~ 161 (175)
..+....+... . ....+..+.++ +.+. ...+++++++|+||||..
T Consensus 71 ~~v~~~~~~~~--~---~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 71 LPIRYQTPAVK--S---DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp SCEEECCTTCS--C---CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC
T ss_pred ceeeeeecccc--c---cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC
Confidence 33322111111 0 01112234443 1111 245789999999999853
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.67 E-value=1e-17 Score=142.95 Aligned_cols=118 Identities=14% Similarity=0.019 Sum_probs=90.1
Q ss_pred CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEE
Q psy1539 37 QTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 116 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~ 116 (175)
+.++|.++++.+.++++++++||||||||.+|.+|+++. +.+++|++|||+|+.|+.+.+.+.. +..+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~----g~~vg~ 287 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH----GIDPNI 287 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH----SCCCEE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh----CCCeeE
Confidence 445666666666688999999999999999999998762 4589999999999999988766554 555667
Q ss_pred EECCCchHHhHHHHhcCCCeEEE-----eecCccCCCCceEEEEeCC---CCCCHHHHHHHHh
Q psy1539 117 FFGGLPIQKDEEYLKTHNPQIVG-----LVNYETNLSGVVVNVMDVR---SGGWWLDLEALIL 171 (175)
Q Consensus 117 ~~g~~~~~~~~~~l~~~~~iiv~-----l~~~~~~~~~~~~lVlDEa---d~~f~~~v~~il~ 171 (175)
.+|+.. +..+.+++|+ +.+..+.+++++++|+||| +.+|..++..|+.
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~ 343 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLD 343 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHH
T ss_pred EECcEe-------ccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHHHHHHHHH
Confidence 777764 2346789998 3333677889999999999 3456666666654
No 66
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.67 E-value=2.3e-16 Score=132.86 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=68.4
Q ss_pred CCCCCcHHHHHhHHH----HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhh
Q psy1539 33 PFREQTSFQHECIPQ----AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 108 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~----~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (175)
|| .++|.|.+.+.. +.+|+++++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+.+..+.+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~ 73 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREK 73 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCS
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 45 689999997764 457899999999999999999999997 2458999999999999999999888766
Q ss_pred CCCeEEEEEECC
Q psy1539 109 MSNIKVGVFFGG 120 (175)
Q Consensus 109 ~~~i~v~~~~g~ 120 (175)
. ++++..+.|.
T Consensus 74 ~-~~~~~~l~gr 84 (551)
T 3crv_A 74 R-NITFSFLVGK 84 (551)
T ss_dssp S-CCCEEECCCH
T ss_pred c-CccEEEEccc
Confidence 6 7888877774
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.67 E-value=3.3e-18 Score=146.88 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred HHhhCCCC-----CCcHHHH-----HhHHHHh------cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 28 IGESQPFR-----EQTSFQH-----ECIPQAV------LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 28 ~l~~~g~~-----~~t~~Q~-----~~i~~~~------~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
++...||. .||++|+ ++||.++ +|+|+++++|||||||++|++|+++.+.. ++.+++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEccH
Confidence 56677777 8999999 9999888 89999999999999999999999988765 45789999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE-eecC--------ccCCCCceEEEEeCCCCC
Q psy1539 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG-LVNY--------ETNLSGVVVNVMDVRSGG 161 (175)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~-l~~~--------~~~~~~~~~lVlDEad~~ 161 (175)
++|+.|+++.++.+ ++. ...+.. . .. ..+.-++. +.+. ...+++++++|+||||..
T Consensus 280 r~La~Q~~~~l~~~-----~i~--~~~~~l--~----~v-~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 280 RVVAAEMAEALRGL-----PVR--YLTPAV--Q----RE-HSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp HHHHHHHHHHTTTS-----CCE--ECCC---------CC-CCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC
T ss_pred HHHHHHHHHHHhcC-----Cee--eecccc--c----cc-CCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc
Confidence 99999998877643 222 111100 0 01 11222222 1111 136889999999999864
No 68
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.60 E-value=4.5e-15 Score=129.32 Aligned_cols=143 Identities=13% Similarity=0.074 Sum_probs=98.6
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHhhh--cCCCCeEEEE
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLE--TTDSNVYVLV 87 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~-g~~~ii~a~TGsGKT~~~~~~~l~~l~--~~~~~~~~li 87 (175)
.+...|+++++++.+.+.+.+.+ ..|++.|+++|+.++. |+++++++|||||||+ ++|++.... ....+.++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEe
Confidence 34667999999999999999988 7899999999988775 5789999999999998 455552221 1122568999
Q ss_pred EecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCC-chHHhHHHHhcCCCeEEEe----ec---CccCCCCceEEEEeCCC
Q psy1539 88 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL-PIQKDEEYLKTHNPQIVGL----VN---YETNLSGVVVNVMDVRS 159 (175)
Q Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~-~~~~~~~~l~~~~~iiv~l----~~---~~~~~~~~~~lVlDEad 159 (175)
++|+|+|+.|+.+.+.... +..+...+|.. ..... ...+.++++++ .+ ....+.+++++|+||++
T Consensus 146 l~P~r~La~q~~~~l~~~~----~~~v~~~vG~~i~~~~~---~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEM----DVKLGEEVGYSIRFENK---TSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAH 218 (773)
T ss_dssp EESCHHHHHHHHHHHHHHT----TCCBTTTEEEEETTEEE---CCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGG
T ss_pred cCchHHHHHHHHHHHHHHh----CCchhheecceeccccc---cCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCcc
Confidence 9999999999887665443 22222222211 00000 11245777772 11 13568899999999997
Q ss_pred C-CCH
Q psy1539 160 G-GWW 163 (175)
Q Consensus 160 ~-~f~ 163 (175)
. +..
T Consensus 219 ~R~ld 223 (773)
T 2xau_A 219 ERTLA 223 (773)
T ss_dssp GCCHH
T ss_pred ccccc
Confidence 4 443
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.58 E-value=3.9e-15 Score=132.78 Aligned_cols=122 Identities=19% Similarity=0.162 Sum_probs=90.1
Q ss_pred CCcHHHHHhHHHHhc--------------CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVL--------------GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~--------------g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
.|+|+|.+|++.+++ +++.+++++||||||+++ ++++..+.......++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998875 378999999999999997 66666554433446999999999999999998
Q ss_pred HHHHHhhCCCeEEEEEECCCchHHhHHHHh-cCCCeEEEeecC----------ccCCCCceEEEEeCCCCCCHHH
Q psy1539 102 YERFSKYMSNIKVGVFFGGLPIQKDEEYLK-THNPQIVGLVNY----------ETNLSGVVVNVMDVRSGGWWLD 165 (175)
Q Consensus 102 ~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~-~~~~iiv~l~~~----------~~~~~~~~~lVlDEad~~f~~~ 165 (175)
++.+... . +.++.+.....+.+. .+.+++|++.+. ...+++..++|+||||.+...+
T Consensus 350 f~~f~~~--~-----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~ 417 (1038)
T 2w00_A 350 YQRFSPD--S-----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGE 417 (1038)
T ss_dssp HHTTSTT--C-----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHH
T ss_pred HHHhccc--c-----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchH
Confidence 8877542 1 234455455555664 467888884333 1135678999999998765443
No 70
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.57 E-value=2.5e-15 Score=127.23 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=68.6
Q ss_pred CCcHHHHHhHHHHhc----C-CcEEEEcCCCChHHHHHHHHHHHhhhcCC-------CCeEEEEEecCHHHHHHHH-HHH
Q psy1539 36 EQTSFQHECIPQAVL----G-MDILCQAKSGMGKTAVFVLATLQQLETTD-------SNVYVLVMCHTRELAFQIS-KEY 102 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~----g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~-------~~~~~lil~Pt~~L~~q~~-~~~ 102 (175)
.|+++|.++++.+++ | +++++++|||||||++++. ++..+.... .+.++||++||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998876 4 6799999999999999654 444443333 5679999999999999988 666
Q ss_pred HHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecC------------ccCCCCceEEEEeCCCCCC
Q psy1539 103 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY------------ETNLSGVVVNVMDVRSGGW 162 (175)
Q Consensus 103 ~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~------------~~~~~~~~~lVlDEad~~f 162 (175)
+.+. ..+..+.++. ...+.+++|++.+. .+...+++++|+||||...
T Consensus 257 ~~~~-----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~ 315 (590)
T 3h1t_A 257 TPFG-----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGS 315 (590)
T ss_dssp TTTC-----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---
T ss_pred Hhcc-----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccc
Confidence 6443 2333333332 12356888883322 2345678999999997554
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.56 E-value=9.9e-15 Score=125.31 Aligned_cols=133 Identities=12% Similarity=0.010 Sum_probs=89.9
Q ss_pred CHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH
Q psy1539 22 REKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 22 ~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
..+.++++.++.+ |.|.......++|++++++||||||||+ +++..+.... +++|++|||+||.|+++.
T Consensus 130 ~~d~l~~i~dl~~----p~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~---~gl~l~PtR~LA~Qi~~~ 198 (677)
T 3rc3_A 130 CKDDLRKISDLRI----PPNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK---SGVYCGPLKLLAHEIFEK 198 (677)
T ss_dssp CHHHHHHHTBCCC----GGGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS---SEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHhhccC----hhhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC---CeEEEeCHHHHHHHHHHH
Confidence 3344455544332 3444444566789999999999999998 3444444332 459999999999999998
Q ss_pred HHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCC----CCCHHHHHHHHhh
Q psy1539 102 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRS----GGWWLDLEALILS 172 (175)
Q Consensus 102 ~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad----~~f~~~v~~il~~ 172 (175)
+++. ++++..++|+...-.. .-....+++++........++++++|+||+| .+|..+++.++..
T Consensus 199 l~~~-----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~ 266 (677)
T 3rc3_A 199 SNAA-----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLG 266 (677)
T ss_dssp HHHT-----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHH
T ss_pred HHhc-----CCcEEEEECCeeEEec--CCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHc
Confidence 7764 7788899998754100 0001145666654443445788999999994 5788888877764
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.56 E-value=4.6e-15 Score=124.69 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCCCCCcHHHHHhHHH----HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 32 QPFREQTSFQHECIPQ----AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~----~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
.|| .|+|+|.+++.. +.+|+++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+.++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 467 799999998654 4578999999999999999999999764 358999999999999998877664
No 73
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.55 E-value=2.4e-15 Score=124.10 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=66.4
Q ss_pred HHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHh
Q psy1539 47 QAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 126 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~ 126 (175)
.+.+|+++++++|||||||++|++|+++.+.. .+.++||++|||+|+.|+.+.++ +..+....+.....
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~-- 85 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE-- 85 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC--------
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccC--
Confidence 45678999999999999999999999988764 45689999999999999888776 22222211111100
Q ss_pred HHHHhcCCCeEEEeecC--------ccCCCCceEEEEeCCCC
Q psy1539 127 EEYLKTHNPQIVGLVNY--------ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 127 ~~~l~~~~~iiv~l~~~--------~~~~~~~~~lVlDEad~ 160 (175)
.....++..+... ...+++++++|+||||.
T Consensus 86 ----~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~ 123 (459)
T 2z83_A 86 ----HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHF 123 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTC
T ss_pred ----CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCcc
Confidence 1111222211111 24578999999999985
No 74
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.55 E-value=3.5e-15 Score=122.50 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=69.2
Q ss_pred HHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHh
Q psy1539 47 QAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 126 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~ 126 (175)
.+++|+|+++++|||||||++|++|+++.+.. ++.+++|++||++|+.|+++.++.+ + +....+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--~~~~~lil~Ptr~La~Q~~~~l~~~-----~--v~~~~~~~~~--- 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHGL-----D--VKFHTQAFSA--- 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTS-----C--EEEESSCCCC---
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--cCCeEEEEcchHHHHHHHHHHHhcC-----C--eEEeccccee---
Confidence 35689999999999999999999999998765 4578999999999999998877633 2 2222221110
Q ss_pred HHHHhcCCCeEEE-eecC--------ccCCCCceEEEEeCCCCC
Q psy1539 127 EEYLKTHNPQIVG-LVNY--------ETNLSGVVVNVMDVRSGG 161 (175)
Q Consensus 127 ~~~l~~~~~iiv~-l~~~--------~~~~~~~~~lVlDEad~~ 161 (175)
...+..++. +.+. ...+++++++|+||+|..
T Consensus 72 ----v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~ 111 (440)
T 1yks_A 72 ----HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 111 (440)
T ss_dssp ----CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC
T ss_pred ----ccCCccceeeecccchhHhhhCcccccCccEEEEECcccc
Confidence 111222222 2211 234789999999999864
No 75
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.53 E-value=8.3e-15 Score=119.97 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=65.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 129 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~ 129 (175)
+|+++++++|||||||++|++|+++.+.. ++.+++|++||++|+.|+++.++ ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~------ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS------ 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc------
Confidence 47899999999999999999999976654 45689999999999999887664 4445544443221
Q ss_pred HhcCCCeEEEeecC--------ccCCCCceEEEEeCCCCC
Q psy1539 130 LKTHNPQIVGLVNY--------ETNLSGVVVNVMDVRSGG 161 (175)
Q Consensus 130 l~~~~~iiv~l~~~--------~~~~~~~~~lVlDEad~~ 161 (175)
......++..+... ...+++++++|+||+|..
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL 105 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC
T ss_pred cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC
Confidence 11111222221111 334889999999999753
No 76
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.41 E-value=3.9e-13 Score=114.60 Aligned_cols=83 Identities=24% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCcHHHHHhHH----HHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 36 EQTSFQHECIP----QAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 36 ~~t~~Q~~~i~----~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.|+|.|.+.+. .+.+|+++++.||||+|||++|++|++..+.. .+.+++|++||++++.|+.+.++.+.... +
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--~~~kvli~t~T~~l~~Qi~~el~~l~~~~-~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--RKLKVLYLVRTNSQEEQVIKELRSLSSTM-K 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHHHHHHHHS-C
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--cCCeEEEECCCHHHHHHHHHHHHHHhhcc-C
Confidence 57999999885 44579999999999999999999999998764 34689999999999999999999998876 7
Q ss_pred eEEEEEECCC
Q psy1539 112 IKVGVFFGGL 121 (175)
Q Consensus 112 i~v~~~~g~~ 121 (175)
+++..+.|+.
T Consensus 80 ~~~~~l~gr~ 89 (620)
T 4a15_A 80 IRAIPMQGRV 89 (620)
T ss_dssp CCEEECCCHH
T ss_pred eEEEEEECCC
Confidence 8888777753
No 77
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.38 E-value=7.5e-13 Score=109.71 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=81.9
Q ss_pred CCcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 36 EQTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.|+|+|.++++.+. .+.+.++..+||+|||+.++..+ ..+.......++||+||+ +|+.|+.+.++++. |+
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~---~~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKENELTPSLVICPL-SVLKNWEEELSKFA---PH 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHC---TT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHC---CC
Confidence 68999999998763 57899999999999999875444 444433344579999995 68899999988875 35
Q ss_pred eEEEEEECCCchHHhHHHHhcCCCeEEEeecC-----ccCCCCceEEEEeCCC
Q psy1539 112 IKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNY-----ETNLSGVVVNVMDVRS 159 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~-----~~~~~~~~~lVlDEad 159 (175)
.++..+.|+.... ...+.+++|+..+. .+...+.+++|+|||+
T Consensus 112 ~~v~~~~g~~~~~-----~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH 159 (500)
T 1z63_A 112 LRFAVFHEDRSKI-----KLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQ 159 (500)
T ss_dssp SCEEECSSSTTSC-----CGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGG
T ss_pred ceEEEEecCchhc-----cccCCcEEEeeHHHHhccchhcCCCcCEEEEeCcc
Confidence 6777776665321 12346788882222 2334578999999995
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.26 E-value=5.1e-12 Score=112.56 Aligned_cols=118 Identities=16% Similarity=0.052 Sum_probs=82.0
Q ss_pred CCcHHHHHhHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 36 EQTSFQHECIPQAVL--GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~--g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
.|+|+|.+++..++. +.+++++.+||+|||+.++..+...+... ...++||+||+ +|+.|+.+.+.+.. ++.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l~ 226 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF----NLR 226 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS----CCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh----CCC
Confidence 689999999988876 46899999999999999877776665443 33479999999 99999888776543 556
Q ss_pred EEEEECCCchHHhHHH---HhcCCCeEEE----eecC-----ccCCCCceEEEEeCCCC
Q psy1539 114 VGVFFGGLPIQKDEEY---LKTHNPQIVG----LVNY-----ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~---l~~~~~iiv~----l~~~-----~~~~~~~~~lVlDEad~ 160 (175)
+..+.|+... ..... .....+++|+ +.+. .+...++.++|+|||+.
T Consensus 227 v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 227 FALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp CEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred EEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 6555543321 11110 1123578888 2121 24456899999999953
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.26 E-value=6.9e-11 Score=101.32 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=71.2
Q ss_pred CCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 32 QPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 32 ~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.|. .|+++|......+.+|+ +....||+|||+++.+|++-... .|..+.|++|++.||.|-.+++..+.+.+ |
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL---~G~~vhVvT~ndyLA~rdae~m~~l~~~L-g 144 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL---IGKGVHLVTVNDYLARRDALWMGPVYLFL-G 144 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh---cCCceEEEeccHHHHHhHHHHHHHHHHHh-C
Confidence 455 58999999998888888 89999999999999999975544 34579999999999999999999999999 9
Q ss_pred eEEEEEEC
Q psy1539 112 IKVGVFFG 119 (175)
Q Consensus 112 i~v~~~~g 119 (175)
+++++++.
T Consensus 145 lsvg~i~~ 152 (822)
T 3jux_A 145 LRVGVINS 152 (822)
T ss_dssp CCEEEEET
T ss_pred CEEEEEcC
Confidence 99999988
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.19 E-value=3.9e-11 Score=105.03 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=85.4
Q ss_pred CCcHHHHHhHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCC
Q psy1539 36 EQTSFQHECIPQAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 111 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~----~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (175)
.++|+|.+++..+. .+.+.++..++|+|||+..+..+...+........+||||| .+|+.|+.+.+.++. |+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~---p~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA---PD 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS---TT
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC---CC
Confidence 68899999998665 78999999999999998876655544433333446899999 678889888888775 57
Q ss_pred eEEEEEECCCchHHhHHHHh------------cCCCeEEEeecC------ccCCCCceEEEEeCCCC
Q psy1539 112 IKVGVFFGGLPIQKDEEYLK------------THNPQIVGLVNY------ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 112 i~v~~~~g~~~~~~~~~~l~------------~~~~iiv~l~~~------~~~~~~~~~lVlDEad~ 160 (175)
+++..++|+.......+... ...+++|+..+. .+.-.+..++|+|||+.
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHR 378 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGG
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhh
Confidence 78888888765444433321 234677772221 22223678999999953
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.17 E-value=5.3e-11 Score=101.30 Aligned_cols=126 Identities=18% Similarity=0.143 Sum_probs=83.3
Q ss_pred cHHHHHhHHHHhcCCcEEEEcCCCChHH--HHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 38 TSFQHECIPQAVLGMDILCQAKSGMGKT--AVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 38 t~~Q~~~i~~~~~g~~~ii~a~TGsGKT--~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
++.|++|++.++.++++++.+++||||| ++++++.+..+.. ..+.++++++||.+.+.++.+.+....... ++...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~ 228 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDE 228 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHH
Confidence 7899999999999999999999999999 6677887776532 245689999999999999988887766554 32110
Q ss_pred EEECCCchHHhHHHHhcCCCeEEE-------eecCccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVG-------LVNYETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~-------l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
.. .+.. ... ...+-+++ +........+++++|+|||++.-.++++.++..
T Consensus 229 ~~-~~~~--~~~----~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~ 285 (608)
T 1w36_D 229 QK-KRIP--EDA----STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 (608)
T ss_dssp CC-CSCS--CCC----BTTTSCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHT
T ss_pred HH-hccc--hhh----hhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHh
Confidence 00 0000 000 00011111 111112223789999999987777788887753
No 82
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.15 E-value=4.1e-10 Score=96.38 Aligned_cols=122 Identities=13% Similarity=0.055 Sum_probs=83.8
Q ss_pred CCcHHHHHhHHHHh---------cCCcEEEEcCCCChHHHHHHHHHHHhhhcCC----CCeEEEEEecCHHHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAV---------LGMDILCQAKSGMGKTAVFVLATLQQLETTD----SNVYVLVMCHTRELAFQISKEY 102 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~---------~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~ 102 (175)
.+.|+|.+++..+. .+.+.++..++|+|||+..+..+...+.... ...++||++|+ +|+.|+.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 58999999998764 4578999999999999987766655544321 23468999997 8899999999
Q ss_pred HHHHhhCCCeEEEEEECCCchHH--hHHHHhc------CCCeEEEeecC------ccCCCCceEEEEeCCCC
Q psy1539 103 ERFSKYMSNIKVGVFFGGLPIQK--DEEYLKT------HNPQIVGLVNY------ETNLSGVVVNVMDVRSG 160 (175)
Q Consensus 103 ~~~~~~~~~i~v~~~~g~~~~~~--~~~~l~~------~~~iiv~l~~~------~~~~~~~~~lVlDEad~ 160 (175)
.++... .+.+..++||..... ....+.. ..+++|+..+. .+.-.+..++|+|||+.
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ 203 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHR 203 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGG
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECcee
Confidence 998754 456666777654221 1222221 35777772221 23335788999999954
No 83
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.55 E-value=1.1e-06 Score=74.88 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=53.7
Q ss_pred CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHH
Q psy1539 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 104 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (175)
...+++.|.+|+..++.+.-.+|.||+|+|||.+.. .++..+... .+.++++.+||..-+.++.+.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 346799999999998888889999999999997643 333444321 345899999999999888777654
No 84
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.47 E-value=1.2e-06 Score=75.06 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=51.5
Q ss_pred CCcHHHHHhHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 104 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~-~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (175)
.+++-|.+|+..++..+ -.+|+||+|||||.+..-.+.+.+. .+.++|+.+||..=+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~---~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK---QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEcCchHHHHHHHHHHHh
Confidence 57899999999888765 4689999999999875544444443 345899999999988887776654
No 85
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.7e-06 Score=74.51 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=53.9
Q ss_pred CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHH
Q psy1539 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (175)
+..+++.|.+|+..++.+.-.+|.||+|||||.+..- ++..+... .+.++++++||..-+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 3457899999999998888899999999999976543 33333221 2347999999999999988877654
No 86
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.39 E-value=3.4e-06 Score=73.86 Aligned_cols=68 Identities=19% Similarity=0.138 Sum_probs=53.1
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHH
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 104 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (175)
..+++.|.+|+..++.+.-.+|.||+|+|||.+.. .++..+... .+.++++++||..-+.++.+.+.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 45799999999999888889999999999997643 344444332 345899999999999887776654
No 87
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.31 E-value=5.5e-06 Score=70.05 Aligned_cols=113 Identities=13% Similarity=0.000 Sum_probs=72.1
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.+++.|.+++..++.+..+++.++.|+|||... ..++..+.. .+.++++++||...+..+.+.. +....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~--------~~~a~ 257 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--LGLEVGLCAPTGKAARRLGEVT--------GRTAS 257 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--TTCCEEEEESSHHHHHHHHHHH--------TSCEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--cCCeEEEecCcHHHHHHhHhhh--------cccHH
Confidence 579999999999999999999999999999653 334444433 3457899999998887765432 11111
Q ss_pred EEECCCchHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHh
Q psy1539 116 VFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALIL 171 (175)
Q Consensus 116 ~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~ 171 (175)
.++ +.+..... ............+++|+||+.+.-...+..++.
T Consensus 258 Tih---------~ll~~~~~---~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~ 301 (574)
T 3e1s_A 258 TVH---------RLLGYGPQ---GFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLA 301 (574)
T ss_dssp EHH---------HHTTEETT---EESCSSSSCCSCSEEEECCGGGCCHHHHHHHHT
T ss_pred HHH---------HHHcCCcc---hhhhhhcccccCCEEEEcCccCCCHHHHHHHHH
Confidence 100 00000000 111112233467899999998777777777664
No 88
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.19 E-value=2.7e-05 Score=63.89 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=50.0
Q ss_pred hhCCCCCCcHHHHHhHHHHhc----C-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHH
Q psy1539 30 ESQPFREQTSFQHECIPQAVL----G-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 101 (175)
Q Consensus 30 ~~~g~~~~t~~Q~~~i~~~~~----g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 101 (175)
..+.|..+++-|++++..++. + ..+++.|+.|||||... ..++..+.... ...+++++||..-+..+.+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-CCCEEEEESSHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-CceEEEecCcHHHHHHHHhh
Confidence 445688999999999987653 2 39999999999999543 44555554322 23689999998887665543
No 89
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.75 E-value=8.9e-05 Score=63.01 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=54.6
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-CCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
..+++-|.+++. ..+..++|.|+.|||||.+..--+...+... ....+++++++|+..+.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 468999999996 2357899999999999987655555444432 1234799999999999999999887743
No 90
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.61 E-value=0.00015 Score=62.36 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=52.3
Q ss_pred CCCCCcHHHHHhHHHHhc----C-CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 33 PFREQTSFQHECIPQAVL----G-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 33 g~~~~t~~Q~~~i~~~~~----g-~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
+| .|++.|..++..+.+ | +...+.+.||||||+++.- ++.... ..+|||+|+..+|.|+++.++.+..
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~~-----~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEALG-----RPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHT-----CCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHhC-----CCEEEEecCHHHHHHHHHHHHHHCC
Confidence 56 799999999876653 4 3567899999999976643 233321 1489999999999999999998853
No 91
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.60 E-value=0.00013 Score=62.65 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=57.8
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEecCHHHHHHHHHHHHHHHhhC--CCe
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSKYM--SNI 112 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~i 112 (175)
.+++-|++++.. .+.+++|.|+.|||||.+..--+...+.. .-...++++++.|+..+.++.+.+.+..... .++
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 478999999875 36789999999999998765555444433 2233479999999999999999888764321 235
Q ss_pred EEEEE
Q psy1539 113 KVGVF 117 (175)
Q Consensus 113 ~v~~~ 117 (175)
.+..+
T Consensus 80 ~v~Tf 84 (673)
T 1uaa_A 80 MISTF 84 (673)
T ss_dssp EEEEH
T ss_pred EEEeH
Confidence 55443
No 92
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.46 E-value=0.00032 Score=64.18 Aligned_cols=69 Identities=28% Similarity=0.315 Sum_probs=55.7
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCC---CCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD---SNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.+|+-|.++|..- +.+++|.|+.|||||.+.+--++..+.... ..-+.+++++|+..+.++.+.+....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 5799999998653 889999999999999887666666665432 33479999999999999998887743
No 93
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.39 E-value=0.00074 Score=58.48 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=58.2
Q ss_pred CCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcC-CCCeEEEEEecCHHHHHHHHHHHHHHHhh-CCCe
Q psy1539 35 REQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKY-MSNI 112 (175)
Q Consensus 35 ~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~i 112 (175)
..+++-|++|+.. .+..++|.|+.|||||.+...-+...+... -...++++++.|+..+.++.+.+.++... ..++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 4689999999865 356899999999999987665555544432 23347999999999999999888776432 1244
Q ss_pred EEEEE
Q psy1539 113 KVGVF 117 (175)
Q Consensus 113 ~v~~~ 117 (175)
.+..+
T Consensus 88 ~v~Tf 92 (724)
T 1pjr_A 88 WISTF 92 (724)
T ss_dssp EEEEH
T ss_pred EEeeH
Confidence 44443
No 94
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.02 E-value=0.001 Score=54.32 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=53.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhC-CCeEEEEEECCCchHHhHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM-SNIKVGVFFGGLPIQKDEEYL 130 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~i~v~~~~g~~~~~~~~~~l 130 (175)
+=.++.|+.|+|||.... +.+.. ...++++||++++..+.+.+.+..... .+.++.. -...+
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T---------~dsfL 224 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASGIIVATKDNVRT---------VDSFL 224 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEE---------HHHHH
T ss_pred cEEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcCccccccceEEE---------eHHhh
Confidence 346899999999997542 22221 246999999999988777664321000 0111111 11122
Q ss_pred hcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHH
Q psy1539 131 KTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALI 170 (175)
Q Consensus 131 ~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il 170 (175)
.+.. .......+.+|+||+.+.....+..++
T Consensus 225 ~~~~---------~~~~~~~d~liiDE~sm~~~~~l~~l~ 255 (446)
T 3vkw_A 225 MNYG---------KGARCQFKRLFIDEGLMLHTGCVNFLV 255 (446)
T ss_dssp HTTT---------SSCCCCCSEEEEETGGGSCHHHHHHHH
T ss_pred cCCC---------CCCCCcCCEEEEeCcccCCHHHHHHHH
Confidence 2210 111124789999999777777776654
No 95
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.82 E-value=0.008 Score=50.85 Aligned_cols=74 Identities=11% Similarity=0.186 Sum_probs=58.8
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
.++|+|...+..+...+.+++..+-|+|||.....-++..+... .+..+++++|+++.+..+.+.++.+.+..|
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 47999999998775668899999999999987664444444332 355899999999999999988888887664
No 96
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.80 E-value=0.0099 Score=47.73 Aligned_cols=74 Identities=11% Similarity=0.193 Sum_probs=58.6
Q ss_pred CCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCC
Q psy1539 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (175)
.++|+|...+..+...+-+++..+-+.|||.....-++..+.. ..+..+++++|+++-|..+.+.++.+.+..|
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 6799999999876555778999999999998766555543333 2456899999999999999988888877664
No 97
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.72 E-value=0.0037 Score=53.65 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=50.0
Q ss_pred CCcHHHHHhHHHHhc----CC-cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHh
Q psy1539 36 EQTSFQHECIPQAVL----GM-DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 107 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~----g~-~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (175)
.|+..|..++..+.+ |. ...+.+.||||||++..- ++.... . .+|||+|+..+|.|+++.++.|..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~~----~-~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEVN----K-PTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHC----C-CEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHhC----C-CEEEEECCHHHHHHHHHHHHHHcC
Confidence 689999998875543 43 477889999999976543 233321 1 489999999999999999999853
No 98
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.065 Score=37.58 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=53.2
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.++++..+..+.+.++.. ++.+..++|+.+..+..+ .++++ ..++|+ +....++++++.++|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi 107 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVV 107 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEE
Confidence 4458999999999998877766543 778999999987654433 34443 567777 555588899999998
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-+.
T Consensus 108 ~~d~ 111 (175)
T 2rb4_A 108 NFDL 111 (175)
T ss_dssp ESSC
T ss_pred EeCC
Confidence 6443
No 99
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.31 E-value=0.031 Score=38.86 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=52.9
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+..+ .++++ ..++|+ .....+++++++++|.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~ 109 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN 109 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE
Confidence 347999999999998887777653 778999999987554433 34444 467777 4555788888998887
Q ss_pred eCC
Q psy1539 156 DVR 158 (175)
Q Consensus 156 DEa 158 (175)
-+.
T Consensus 110 ~~~ 112 (163)
T 2hjv_A 110 YDL 112 (163)
T ss_dssp SSC
T ss_pred eCC
Confidence 655
No 100
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.22 E-value=0.16 Score=42.13 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeE
Q psy1539 62 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQI 137 (175)
Q Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~ii 137 (175)
..+....+-.+...+.....+.++||.++|+.-+..+.+.+++.... ++.+..++|+.+..+..+ .++++ .+++
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGIL 396 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 34443333344444443345668999999999999999888876542 678889999987654433 34444 4677
Q ss_pred EE--eecCccCCCCceEEEEeCCCCCC
Q psy1539 138 VG--LVNYETNLSGVVVNVMDVRSGGW 162 (175)
Q Consensus 138 v~--l~~~~~~~~~~~~lVlDEad~~f 162 (175)
|+ +....+++++++++|.-..-...
T Consensus 397 vaT~~~~~GiDip~v~~VI~~~~p~s~ 423 (563)
T 3i5x_A 397 VCTDVGARGMDFPNVHEVLQIGVPSEL 423 (563)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSST
T ss_pred EEcchhhcCCCcccCCEEEEECCCCch
Confidence 77 56668899999999887764333
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.19 E-value=0.01 Score=41.87 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=33.5
Q ss_pred cHHHHHhHHHHh---------cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH
Q psy1539 38 TSFQHECIPQAV---------LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99 (175)
Q Consensus 38 t~~Q~~~i~~~~---------~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (175)
++.|.+++..+. .|+.+++.+|+|+|||... -.+...+... .+..+++ .+..++..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~-~g~~~~~-~~~~~~~~~~~ 83 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA-VATLKAIYEK-KGIRGYF-FDTKDLIFRLK 83 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH-HHHHHHHHHH-SCCCCCE-EEHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH-HHHHHHHHHH-cCCeEEE-EEHHHHHHHHH
Confidence 456666665443 4789999999999999643 3344443321 2222333 44555554433
No 102
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=95.99 E-value=0.22 Score=41.64 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=61.8
Q ss_pred HHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCcc
Q psy1539 72 TLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYET 145 (175)
Q Consensus 72 ~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~ 145 (175)
+...+.....+.++||.++|+.-+..+.+.+++.... ++.+..++|+.+..+.. +.++++ ..++|+ +....+
T Consensus 278 l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gi 355 (579)
T 3sqw_A 278 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 355 (579)
T ss_dssp HHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSC
T ss_pred HHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCC
Confidence 3333333345568999999999999999988876542 67888999998755443 334444 466777 556688
Q ss_pred CCCCceEEEEeCCC
Q psy1539 146 NLSGVVVNVMDVRS 159 (175)
Q Consensus 146 ~~~~~~~lVlDEad 159 (175)
++++++++|.-..-
T Consensus 356 Dip~v~~VI~~~~p 369 (579)
T 3sqw_A 356 DFPNVHEVLQIGVP 369 (579)
T ss_dssp CCTTCCEEEEESCC
T ss_pred CcccCCEEEEcCCC
Confidence 99999999987763
No 103
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=95.94 E-value=0.068 Score=37.09 Aligned_cols=85 Identities=13% Similarity=0.235 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE
Q psy1539 64 KTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG 139 (175)
Q Consensus 64 KT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~ 139 (175)
|. ..+..++... .+.++||.+++++-+..+.+.++.. ++.+..++|+.+..+..+ .++++ ..++|+
T Consensus 17 K~-~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 86 (165)
T 1fuk_A 17 KY-ECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 86 (165)
T ss_dssp HH-HHHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HH-HHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 54 3344444432 3457999999999998877776653 678889999987554433 33443 467777
Q ss_pred --eecCccCCCCceEEEEeCC
Q psy1539 140 --LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 140 --l~~~~~~~~~~~~lVlDEa 158 (175)
.....+++++++++|.-+.
T Consensus 87 T~~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 87 TDLLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp EGGGTTTCCCCSCSEEEESSC
T ss_pred cChhhcCCCcccCCEEEEeCC
Confidence 4444677778888776544
No 104
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.88 E-value=0.077 Score=37.21 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeE
Q psy1539 62 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQI 137 (175)
Q Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~ii 137 (175)
..|. ..+..++... .+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+..+ .+++ ...++
T Consensus 16 ~~K~-~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vL 85 (172)
T 1t5i_A 16 NEKN-RKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 85 (172)
T ss_dssp GGHH-HHHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred HHHH-HHHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEE
Confidence 4554 3344444432 3447999999999998877777653 778889999987554433 3444 35677
Q ss_pred EE--eecCccCCCCceEEEEeCC
Q psy1539 138 VG--LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 138 v~--l~~~~~~~~~~~~lVlDEa 158 (175)
|+ .....+++++++++|.-+.
T Consensus 86 vaT~~~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 86 VATNLFGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp EESSCCSTTCCGGGCSEEEESSC
T ss_pred EECCchhcCcchhhCCEEEEECC
Confidence 77 4455778888888887655
No 105
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.79 E-value=0.057 Score=39.32 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=52.0
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
+.++||.+++++-+..+.+.+... ++.+..++|+.+..++.+ .++++ ..++|+ +....+++++++++|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH 105 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE
Confidence 348999999999998888777654 778889999987655443 34444 467777 4555788888888775
Q ss_pred eC
Q psy1539 156 DV 157 (175)
Q Consensus 156 DE 157 (175)
=+
T Consensus 106 ~~ 107 (212)
T 3eaq_A 106 YR 107 (212)
T ss_dssp SS
T ss_pred CC
Confidence 33
No 106
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.57 E-value=0.04 Score=47.29 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=65.4
Q ss_pred CCcHHHHHhHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE
Q psy1539 36 EQTSFQHECIPQAVL--GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 113 (175)
Q Consensus 36 ~~t~~Q~~~i~~~~~--g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~ 113 (175)
.+|.-|.+++..+.+ ..-.++.|+-|.|||.+.-+.+.. +.. .++|-+|+.+=+..+.+ +... .++
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~~-----~~~vtAP~~~a~~~l~~----~~~~--~i~ 242 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IAG-----RAIVTAPAKASTDVLAQ----FAGE--KFR 242 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SSS-----CEEEECSSCCSCHHHHH----HHGG--GCC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HHh-----CcEEECCCHHHHHHHHH----HhhC--CeE
Confidence 578999999988876 234789999999999655444433 221 35888999876654333 2221 111
Q ss_pred EEEEECCCchHHhHHHHhcCCCeEEEeecCccCCCCceEEEEeCCCCCCHHHHHHHHhh
Q psy1539 114 VGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVNVMDVRSGGWWLDLEALILS 172 (175)
Q Consensus 114 v~~~~g~~~~~~~~~~l~~~~~iiv~l~~~~~~~~~~~~lVlDEad~~f~~~v~~il~~ 172 (175)
. ...++ .+. ...+.+++|+|||.+.-.+-++.++..
T Consensus 243 ~------~~Pd~---~~~--------------~~~~~dlliVDEAAaIp~pll~~ll~~ 278 (671)
T 2zpa_A 243 F------IAPDA---LLA--------------SDEQADWLVVDEAAAIPAPLLHQLVSR 278 (671)
T ss_dssp B------CCHHH---HHH--------------SCCCCSEEEEETGGGSCHHHHHHHHTT
T ss_pred E------eCchh---hhh--------------CcccCCEEEEEchhcCCHHHHHHHHhh
Confidence 0 01111 111 235689999999988888888877754
No 107
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.40 E-value=0.25 Score=35.29 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=50.3
Q ss_pred eEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEEEe
Q psy1539 83 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNVMD 156 (175)
Q Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lVlD 156 (175)
.++||.+++++-+..+.+.++.. ++.+..++|+.+..+..+ .+++ ...++|+ .....+++++++++|.=
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~ 129 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINY 129 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEES
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEe
Confidence 47999999999999888777654 678889999987554433 3343 3567777 34446677777777664
Q ss_pred CC
Q psy1539 157 VR 158 (175)
Q Consensus 157 Ea 158 (175)
+.
T Consensus 130 d~ 131 (191)
T 2p6n_A 130 DM 131 (191)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.37 E-value=0.17 Score=35.89 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHH
Q psy1539 52 MDILCQAKSGMGKTAV 67 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~ 67 (175)
.++++.||+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999964
No 109
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.28 E-value=0.056 Score=42.15 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=26.2
Q ss_pred cHHHHHhHHHHh----cC---CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 38 TSFQHECIPQAV----LG---MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 38 t~~Q~~~i~~~~----~g---~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.|+|.+++..+. +| +.+++.||.|+|||... ..+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHh
Confidence 577777765544 34 34999999999999654 33444443
No 110
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=95.21 E-value=0.13 Score=36.56 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHh---HHHHhc-CCCe
Q psy1539 61 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKT-HNPQ 136 (175)
Q Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~---~~~l~~-~~~i 136 (175)
.+.|. ..+.-++... ..+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+. .+.+++ ...+
T Consensus 29 ~~~K~-~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 99 (185)
T 2jgn_A 29 ESDKR-SFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPI 99 (185)
T ss_dssp GGGHH-HHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSE
T ss_pred cHHHH-HHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 45664 3344444442 23458999999999998877776653 7788889998764432 334444 3567
Q ss_pred EEE--eecCccCCCCceEEEEeCC
Q psy1539 137 IVG--LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 137 iv~--l~~~~~~~~~~~~lVlDEa 158 (175)
+|+ .....++++++.++|.=+.
T Consensus 100 LvaT~~~~~Gldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 100 LVATAVAARGLDISNVKHVINFDL 123 (185)
T ss_dssp EEEEC------CCCSBSEEEESSC
T ss_pred EEEcChhhcCCCcccCCEEEEeCC
Confidence 777 4444677778877776444
No 111
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.00 E-value=0.34 Score=37.79 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=54.7
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.+++++-+..+.+.++.. ++.+..++|+.+..+..+ .++++ ..++|+ .....+++++++++|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi 323 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 323 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEE
Confidence 3458999999999998887777653 678888999987554433 34443 467777 555688999999999
Q ss_pred EeCCC
Q psy1539 155 MDVRS 159 (175)
Q Consensus 155 lDEad 159 (175)
.-+..
T Consensus 324 ~~~~p 328 (391)
T 1xti_A 324 NYDMP 328 (391)
T ss_dssp ESSCC
T ss_pred EeCCC
Confidence 87663
No 112
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.67 E-value=0.42 Score=37.16 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.+++++-+..+.+.+++. +..+..++|+.+..+.. +.++++ .+++|+ +....+++++++++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 316 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV 316 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE
Confidence 4468999999999998877777653 67788899998755443 344443 467777 556688999999998
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-+.
T Consensus 317 ~~~~ 320 (395)
T 3pey_A 317 NYDL 320 (395)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 7655
No 113
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.63 E-value=0.03 Score=38.13 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=16.9
Q ss_pred HhcCCcEEEEcCCCChHHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~ 67 (175)
...+.++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34568999999999999964
No 114
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.56 E-value=0.25 Score=42.28 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=60.4
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHH---HhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY---LKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~---l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.++|+.-+..+.+.++.. ++++..++|+.+..+..+. +++| .+++|+ +....+++.+++++|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi 518 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA 518 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEE
Confidence 4558999999999998877766653 7788888988775544443 4444 578888 777899999999999
Q ss_pred EeCCC-CCCHHHH
Q psy1539 155 MDVRS-GGWWLDL 166 (175)
Q Consensus 155 lDEad-~~f~~~v 166 (175)
+=++| .||-.+.
T Consensus 519 ~~d~d~~G~p~s~ 531 (661)
T 2d7d_A 519 ILDADKEGFLRSE 531 (661)
T ss_dssp ETTTTCCTTTTSH
T ss_pred EeCcccccCCCCH
Confidence 99985 4553333
No 115
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.50 E-value=0.037 Score=37.67 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~ 68 (175)
..+.++++.+|+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45689999999999999754
No 116
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.49 E-value=0.56 Score=36.73 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=53.7
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.+++++-+..+.+.+++. ++.+..++|+.+..+.. +.++++ ..++|+ .....+++++++++|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 3458999999999999888877765 67788899998755443 344444 467777 555688889999888
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-+.
T Consensus 332 ~~~~ 335 (400)
T 1s2m_A 332 NFDF 335 (400)
T ss_dssp ESSC
T ss_pred EeCC
Confidence 6554
No 117
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.44 E-value=0.092 Score=36.09 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|+.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688999999999999954
No 118
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.31 E-value=0.49 Score=37.26 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=51.7
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.+++++-+..+.+.+++. +..+..++|+.+..+..+ .+++ ...++|+ +....+++++++++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi 349 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 349 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE
Confidence 4568999999999998887777653 778899999987554433 3444 3567777 555577778888777
Q ss_pred EeC
Q psy1539 155 MDV 157 (175)
Q Consensus 155 lDE 157 (175)
.=+
T Consensus 350 ~~~ 352 (417)
T 2i4i_A 350 NFD 352 (417)
T ss_dssp ESS
T ss_pred EEc
Confidence 543
No 119
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=94.22 E-value=0.52 Score=39.79 Aligned_cols=73 Identities=10% Similarity=0.171 Sum_probs=55.0
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.++|+.-+.++.+.++.. ++.+..++|+.+..+..+ .+.+ ..+++|+ .....+++++++++|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI 340 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVI 340 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEE
Confidence 4568999999999999988877653 788999999987654433 3333 3577787 555588999999998
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.=..
T Consensus 341 ~~~~ 344 (591)
T 2v1x_A 341 HHSM 344 (591)
T ss_dssp ESSC
T ss_pred EeCC
Confidence 7554
No 120
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.09 E-value=0.32 Score=39.69 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=34.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEEEE
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVF 117 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~~~ 117 (175)
.-+++.+++|+|||.... -+...+.. .+.+++++. |.|.-+ .++++.+.... ++.+...
T Consensus 101 ~vIlivG~~G~GKTTt~~-kLA~~l~~--~G~kVllv~~D~~R~aa---~eqL~~~~~~~-gvpv~~~ 161 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA-KLARYFQK--RGYKVGVVCSDTWRPGA---YHQLRQLLDRY-HIEVFGN 161 (443)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHHHHT--TTCCEEEEECCCSSTHH---HHHHHHHHGGG-TCEEECC
T ss_pred eEEEEECcCCCCHHHHHH-HHHHHHHH--CCCeEEEEeCCCcchhH---HHHHHHHHHhc-CCcEEec
Confidence 357889999999997543 23333332 344666665 445443 34566666655 6665443
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.05 E-value=0.31 Score=39.64 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=30.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHHHHHHHHHHHHHhhCCCeEEE
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVG 115 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~i~v~ 115 (175)
.-+++.+++|+|||....- +...+.. .+.+++++. +.|.-+ .+++..+.... ++.+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~k-LA~~l~~--~G~kVllv~~D~~r~~a---~eqL~~~~~~~-gv~~~ 156 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGK-LAYFYKK--RGYKVGLVAADVYRPAA---YDQLLQLGNQI-GVQVY 156 (433)
T ss_dssp EEEEECCCTTSCHHHHHHH-HHHHHHH--TTCCEEEEEECCSCHHH---HHHHHHHHHTT-TCCEE
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHH--cCCeEEEEecCccchhH---HHHHHHHHHhc-CCcee
Confidence 3578889999999975432 2223322 234565555 334333 23455555544 55443
No 122
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=93.91 E-value=0.42 Score=36.79 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=51.6
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
+.++||.+++++-+..+.+.+... ++.+..++|+.+..++.+ .++++ ..++|+ +....+++++++++|.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH 102 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE
Confidence 447999999999988877666532 778999999987655443 33443 567887 5555788888888875
Q ss_pred eCC
Q psy1539 156 DVR 158 (175)
Q Consensus 156 DEa 158 (175)
=+.
T Consensus 103 ~d~ 105 (300)
T 3i32_A 103 YRM 105 (300)
T ss_dssp SSC
T ss_pred cCC
Confidence 333
No 123
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.87 E-value=0.27 Score=38.65 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=53.7
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
+.++||.++++.-+..+.+.+++. +..+..++|+.+..+..+ .++++ ..++|+ +....+++++++++|.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 358999999999999888777654 677888999987554433 34443 467777 6666889999999885
Q ss_pred eCC
Q psy1539 156 DVR 158 (175)
Q Consensus 156 DEa 158 (175)
-..
T Consensus 341 ~~~ 343 (412)
T 3fht_A 341 FDL 343 (412)
T ss_dssp SSC
T ss_pred ECC
Confidence 444
No 124
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.73 E-value=0.14 Score=42.54 Aligned_cols=48 Identities=10% Similarity=-0.080 Sum_probs=29.4
Q ss_pred HHHHhhCCCCCCcHHHHHhHH-HHhcCCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 26 DRIGESQPFREQTSFQHECIP-QAVLGMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 26 ~~~l~~~g~~~~t~~Q~~~i~-~~~~g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+..+.+.|. +++.+..-+. .+..|.++++.+|||||||... -.++..+
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 344555552 3444444443 3457899999999999999643 3344433
No 125
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.67 E-value=0.45 Score=40.74 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=61.0
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHH---HhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY---LKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~---l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.++|+.-+..+.+.+.+. ++++..++|+.+..+..+. +++| .+++|+ +....+++.+++++|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI 512 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA 512 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEE
Confidence 3458999999999998877766653 7788888988775544443 4444 578888 777799999999999
Q ss_pred EeCCC-CCCHHHHHH
Q psy1539 155 MDVRS-GGWWLDLEA 168 (175)
Q Consensus 155 lDEad-~~f~~~v~~ 168 (175)
+=++| .||-.+...
T Consensus 513 ~~d~d~~G~p~s~~~ 527 (664)
T 1c4o_A 513 ILDADKEGFLRSERS 527 (664)
T ss_dssp ETTTTSCSGGGSHHH
T ss_pred EeCCcccCCCCCHHH
Confidence 98885 455444443
No 126
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.63 E-value=0.38 Score=36.84 Aligned_cols=16 Identities=44% Similarity=0.499 Sum_probs=11.9
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+++.+|+|+|||...
T Consensus 50 ~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 50 IILHSPSPGTGKTTVA 65 (324)
T ss_dssp EEEECSSTTSSHHHHH
T ss_pred EEEeeCcCCCCHHHHH
Confidence 3566677999999653
No 127
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.61 E-value=0.035 Score=42.64 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=32.4
Q ss_pred cccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHH-HHhcCCcEEEEcCCCChHHHHH
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIP-QAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~-~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
..+-..|++++-.....+.+.+. ...|......... .+..++.+++.+|+|+|||...
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~-v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQEL-VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHH-HHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHH-HHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34455677776666666666543 1111000011011 1234688999999999999654
No 128
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.60 E-value=0.54 Score=37.01 Aligned_cols=71 Identities=11% Similarity=0.233 Sum_probs=52.3
Q ss_pred eEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEEEe
Q psy1539 83 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNVMD 156 (175)
Q Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lVlD 156 (175)
.++||.+++++-+..+.+.+++. ++.+..++|+.+..+..+ .++++ ..++|+ +....+++++++++|.-
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE
Confidence 48999999999998877776653 678888999987554433 34443 567777 55568889999998875
Q ss_pred CC
Q psy1539 157 VR 158 (175)
Q Consensus 157 Ea 158 (175)
+.
T Consensus 352 ~~ 353 (410)
T 2j0s_A 352 DL 353 (410)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 129
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.47 E-value=0.082 Score=41.93 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
|.-+.+.+|+|+|||.. ++.++..+.. .+..++++.....
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~--~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK--MGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH--TTCCEEEEESSCC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh--cCCeEEEEecccc
Confidence 46789999999999954 4444444333 2336777775443
No 130
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.44 E-value=0.025 Score=42.57 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.+|+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 68999999999999654
No 131
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.42 E-value=0.24 Score=35.21 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+++++.+|+|+|||... -.+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 78999999999999643 34444443
No 132
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.36 E-value=0.1 Score=42.25 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=27.3
Q ss_pred HhhCCCCCCcHHHHHhHHHHh--cCCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 29 GESQPFREQTSFQHECIPQAV--LGMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 29 l~~~g~~~~t~~Q~~~i~~~~--~g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+.+.|+ ++-+..++..++ .|.-+++.+|||||||.. +-.++..+.
T Consensus 146 l~~Lg~---~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l~ 192 (418)
T 1p9r_A 146 LHSLGM---TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQELN 192 (418)
T ss_dssp GGGSCC---CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHHC
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhcC
Confidence 445554 334455555444 355689999999999964 344444443
No 133
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.35 E-value=0.85 Score=36.61 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=50.9
Q ss_pred EEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEEEeC
Q psy1539 84 YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNVMDV 157 (175)
Q Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lVlDE 157 (175)
++||.++++.-+..+.+.+++. ++.+..++|+.+..+..+ .++++ .+++|+ +....+++.+++++|.=+
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d 376 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYD 376 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESS
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEEC
Confidence 3999999999998877776643 778899999987554443 34443 577887 555678888888877644
Q ss_pred C
Q psy1539 158 R 158 (175)
Q Consensus 158 a 158 (175)
.
T Consensus 377 ~ 377 (434)
T 2db3_A 377 M 377 (434)
T ss_dssp C
T ss_pred C
Confidence 3
No 134
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.20 E-value=0.073 Score=50.95 Aligned_cols=46 Identities=11% Similarity=0.017 Sum_probs=31.4
Q ss_pred HHHHhc------CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 45 IPQAVL------GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 45 i~~~~~------g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
+..++. |+++++.+|+|+|||.....-+.+... .+.+++++.....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccc
Confidence 555555 689999999999999765444433332 4557888876543
No 135
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.07 E-value=0.85 Score=37.77 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=54.2
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.++|+.-+.++.+.++.. ++.+..++|+.+..+..+ .+.+ ...++|+ .....+++++++++|
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI 309 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE
Confidence 4457999999999999888777653 778999999987544332 3333 3577777 555588999999998
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-..
T Consensus 310 ~~~~ 313 (523)
T 1oyw_A 310 HFDI 313 (523)
T ss_dssp ESSC
T ss_pred EECC
Confidence 7555
No 136
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.05 E-value=0.034 Score=42.00 Aligned_cols=56 Identities=16% Similarity=0.008 Sum_probs=32.6
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHH--HhcCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQ--AVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~--~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.+...|+++.-.++.++.+.+. ...+.. ..+.+.. +..++++++.+|+|+|||...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREV-VELPLK-HPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHH-THHHHH-CHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHH-HHHHhh-CHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3345677777777777776653 111100 0111111 234588999999999999643
No 137
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.03 E-value=0.088 Score=38.41 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=28.2
Q ss_pred CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 34 ~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
+..-+.-|..++..+..|.-+.+.+|+|+|||..+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34445667788888889999999999999999654
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.88 E-value=0.19 Score=35.75 Aligned_cols=40 Identities=15% Similarity=0.024 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
.|+=.++.+|.|+|||...+-- +.++.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~-~~~~~~--~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSF-VEIYKL--GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH-HHHHHH--TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHH-HHHHHH--CCCeEEEEeecc
Confidence 3566789999999999765433 333322 334788888874
No 139
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.87 E-value=0.14 Score=41.25 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (175)
...++++.|+||||||... -+++..+.. .+..++|+=|..++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~--~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL--RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH--TTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH--CCCcEEEEeCCCchh
Confidence 4589999999999999864 334433332 223455555655553
No 140
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.84 E-value=0.16 Score=37.45 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=26.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
.|.=.++.++-|+|||...+-- +.+... .+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~--~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY--AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH--TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH--cCCceEEEEeccC
Confidence 3566788999999999655443 444433 3457899988653
No 141
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.77 E-value=0.09 Score=39.72 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=17.4
Q ss_pred HhcCCcEEEEcCCCChHHHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~ 68 (175)
+..|.-+.+.+|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446788999999999999643
No 142
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.74 E-value=0.14 Score=40.56 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.8
Q ss_pred HHhcCCcEEEEcCCCChHHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~ 67 (175)
.+..|..+.+.+|||||||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 344789999999999999963
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.041 Score=44.83 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=35.3
Q ss_pred cccccccccCCCCHHHHHHHhhCC---CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQP---FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g---~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
..|-.+|++.+-.++..+.+.+.= +.+|.-++..-+ ..-+.+++.||+|+|||+..
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 355667888887777777776531 112222222211 12389999999999999653
No 144
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.58 E-value=0.17 Score=39.75 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+.++++.+|+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999754
No 145
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.57 E-value=0.25 Score=38.10 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
++++++.||+|+|||... ..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 589999999999999643 34444443
No 146
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.39 E-value=0.16 Score=37.49 Aligned_cols=40 Identities=20% Similarity=0.069 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
.|.-+++.+++|+|||.+.+--+.+... .+.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEecc
Confidence 3567888999999999766444433332 344788887764
No 147
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=91.51 E-value=0.025 Score=39.61 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=48.3
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+..+ .++++ ..++|+ +....+++.++.++|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi 103 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVF 103 (170)
Confidence 3458999999999998877776654 667888888876443332 33333 456666 444467777777776
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-+.
T Consensus 104 ~~~~ 107 (170)
T 2yjt_D 104 NFDM 107 (170)
Confidence 5443
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.24 E-value=0.2 Score=36.57 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=29.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 103 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (175)
.|.-+++.+|+|+|||.....-+..... .+..++++.-.. -..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC-CHHHHHHHHH
Confidence 5688999999999999654333333222 233577766432 2344444443
No 149
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=92.14 E-value=0.57 Score=35.98 Aligned_cols=73 Identities=15% Similarity=0.285 Sum_probs=51.1
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.+++++-+..+.+.+++. +..+..++|+.+..+..+ .++++ ..++|+ .....+++++++++|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 4557999999999998887777654 678888999987554433 34443 467777 333467777788777
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-+.
T Consensus 312 ~~~~ 315 (367)
T 1hv8_A 312 NYHL 315 (367)
T ss_dssp ESSC
T ss_pred EecC
Confidence 6554
No 150
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.10 E-value=0.76 Score=36.44 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEEC--------CCchHHh---HH
Q psy1539 60 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG--------GLPIQKD---EE 128 (175)
Q Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g--------~~~~~~~---~~ 128 (175)
..++|.. .+.-++........+.++||.+++++-+..+.+.++.. ++.+..++| +.+..+. .+
T Consensus 340 ~~~~k~~-~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~ 413 (494)
T 1wp9_A 340 LDHPKMD-KLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILD 413 (494)
T ss_dssp CSCHHHH-HHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHH
T ss_pred CCChHHH-HHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHH
Confidence 4455643 33444444332234568999999999998877776654 678888888 5544333 33
Q ss_pred HHhcC-CCeEEE--eecCccCCCCceEEEEeCCC
Q psy1539 129 YLKTH-NPQIVG--LVNYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 129 ~l~~~-~~iiv~--l~~~~~~~~~~~~lVlDEad 159 (175)
.+.++ ..++|+ .....+++.+++++|.-+..
T Consensus 414 ~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 414 EFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCC
T ss_pred HHhcCCceEEEECCccccCCCchhCCEEEEeCCC
Confidence 44444 467777 44447889999999876653
No 151
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.01 E-value=0.26 Score=38.61 Aligned_cols=42 Identities=7% Similarity=-0.064 Sum_probs=27.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHH
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 95 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (175)
-+.+.+|+|+|||...+..+.+.... ..+.+++++.....+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhh
Confidence 47899999999997655444433322 1244788988765554
No 152
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.99 E-value=0.2 Score=35.97 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=27.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
.|+=.++.++.|||||.+.+- ++.+... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~-~a~r~~~--~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR-RIRRAKI--AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHHH--TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHH-HHHHHHH--CCCEEEEEEecc
Confidence 355678899999999976554 3444332 455789998874
No 153
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.98 E-value=0.35 Score=36.49 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.++++.+|+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999654
No 154
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.72 E-value=0.093 Score=36.98 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~ 68 (175)
..|+-+++.+|+|+|||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778999999999999643
No 155
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.72 E-value=0.037 Score=42.88 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=31.5
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHh-----cCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAV-----LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~-----~g~~~ii~a~TGsGKT~~~ 68 (175)
.+...|+++.-.....+.+.+.= . .|.. .|... ..+++++.+|+|+|||...
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i-~--~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAV-I--LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHT-H--HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHH-H--HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34455777777777777776531 1 1111 11111 2368999999999999654
No 156
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.60 E-value=0.27 Score=40.74 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHH
Q psy1539 25 EDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 25 l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~ 67 (175)
+.+.+.+ ++..-...-..+.-.+..|.++++.||+|+|||..
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3444443 23333444445555667889999999999999964
No 157
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.48 E-value=0.1 Score=36.14 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+.++++.+|+|+|||... -.+.+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 378999999999999653 3334443
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.40 E-value=0.092 Score=40.99 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+.++++.+|+|+|||.+. -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 478999999999999654 33444443
No 159
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.39 E-value=0.9 Score=41.45 Aligned_cols=77 Identities=6% Similarity=0.098 Sum_probs=58.8
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhc-CCCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKT-HNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~-~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.+++|++|+++-+..+.+.+++. .|+.++..++|+.+..+..+ .+.+ ..+++|+ +....+++++++++|
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~---~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI 887 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHH---CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHh---CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE
Confidence 4568999999999888877777765 45788999999987554433 3443 4578888 666689999999999
Q ss_pred EeCCCC
Q psy1539 155 MDVRSG 160 (175)
Q Consensus 155 lDEad~ 160 (175)
+..++.
T Consensus 888 i~~~~~ 893 (1151)
T 2eyq_A 888 IERADH 893 (1151)
T ss_dssp ETTTTS
T ss_pred EeCCCC
Confidence 988853
No 160
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.26 E-value=0.11 Score=37.63 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..+++.+|+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3689999999999999643
No 161
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.07 E-value=0.4 Score=36.83 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
+..+++.||+|+|||... -.+...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~~~~--~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEAKKR--GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHHHHT--TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHHHC--CCEEEEEE
Confidence 468999999999999643 3444444332 33455554
No 162
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.00 E-value=0.15 Score=39.30 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.2
Q ss_pred HHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 45 IPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 45 i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
...+..+.++++.+|+|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 344556899999999999999643
No 163
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.98 E-value=0.24 Score=39.21 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.+..+++.+|||||||... -.++..+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL-~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL-AAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 4568999999999999643 33444443
No 164
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.96 E-value=0.12 Score=36.85 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.++.+++.+++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5789999999999999754
No 165
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.91 E-value=0.12 Score=40.37 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=16.9
Q ss_pred HhcCCcEEEEcCCCChHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTA 66 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~ 66 (175)
+..|..+.+.+|||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3468999999999999996
No 166
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.89 E-value=0.21 Score=37.20 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+.++++.+++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4689999999999999643
No 167
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.87 E-value=1.3 Score=34.12 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
...++.+|.|+|||...
T Consensus 19 ~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 19 ISILINGEDLSYPREVS 35 (305)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47899999999998654
No 168
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.85 E-value=0.4 Score=35.12 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=30.4
Q ss_pred HHHHHHhhCCCCCCcHHHHHhHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 24 KEDRIGESQPFREQTSFQHECIPQAVLG----MDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 24 ~l~~~l~~~g~~~~t~~Q~~~i~~~~~g----~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
.+.+-|+=.|+. +... ..++..+.++ +.+++.+|+|+|||..+ .++++.+
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 555555544432 3333 3445555555 35999999999999543 5566554
No 169
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.77 E-value=0.45 Score=36.62 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcC---------CCC----eEEEEEecCHHH-HHHHHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETT---------DSN----VYVLVMCHTREL-AFQISKEYERF 105 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---------~~~----~~~lil~Pt~~L-~~q~~~~~~~~ 105 (175)
|.-+++.+++|+|||...+.-+.+..... ..+ .+++|+.-...+ ..++.+.++++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 36789999999999965544333322111 122 578888755432 44444444443
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.69 E-value=0.13 Score=36.86 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|+-+.+.+|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999743
No 171
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.63 E-value=0.1 Score=36.50 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~ 68 (175)
..++.+++.+++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 45688999999999999754
No 172
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.56 E-value=0.1 Score=36.13 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
..++++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 478999999999999643
No 173
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.52 E-value=0.54 Score=35.70 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCCCCCcHHHHHh-HHHHhcCC-----cEEEEcCCCChHHHHHHHHHHH
Q psy1539 23 EKEDRIGESQPFREQTSFQHEC-IPQAVLGM-----DILCQAKSGMGKTAVFVLATLQ 74 (175)
Q Consensus 23 ~~l~~~l~~~g~~~~t~~Q~~~-i~~~~~g~-----~~ii~a~TGsGKT~~~~~~~l~ 74 (175)
.++.+-|+-.||. +++-.. +..+++|+ .+++.+|+|+|||+.+. ++..
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~-ala~ 126 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE-AIAH 126 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH-HHHh
Confidence 3778888877764 555443 45566553 59999999999997654 3443
No 174
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=90.47 E-value=0.25 Score=44.95 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=28.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCH
Q psy1539 54 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 92 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (175)
-+|.|+.|||||.+.+--+...+.....+.+++++||..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q 42 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc
Confidence 368899999999877666655555444446889998865
No 175
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.46 E-value=0.15 Score=35.48 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
++-+++.+++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 567899999999999754
No 176
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.44 E-value=0.47 Score=37.31 Aligned_cols=73 Identities=8% Similarity=0.139 Sum_probs=44.8
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
...++||.+++++-+..+.+.+++. ++.+..++|+.+..+..+ .++++ ..++|+ +....+++.+++++|
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi 353 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE
Confidence 3447999999999998877766542 677888999887554433 34443 457777 444567777777776
Q ss_pred EeCC
Q psy1539 155 MDVR 158 (175)
Q Consensus 155 lDEa 158 (175)
.-..
T Consensus 354 ~~~~ 357 (414)
T 3eiq_A 354 NYDL 357 (414)
T ss_dssp ESSC
T ss_pred EeCC
Confidence 5444
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.42 E-value=0.13 Score=39.09 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.++++.+|+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999654
No 178
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.42 E-value=0.14 Score=36.35 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=16.8
Q ss_pred HhcCCcEEEEcCCCChHHHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~ 68 (175)
+..|.-+.+.+|+|||||...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 346788999999999999743
No 179
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.38 E-value=0.79 Score=40.00 Aligned_cols=75 Identities=11% Similarity=0.177 Sum_probs=53.5
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHh------hCCCeEEEEEECCCchHHhHHHHhc--------C-CCeEEE--eecC
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSK------YMSNIKVGVFFGGLPIQKDEEYLKT--------H-NPQIVG--LVNY 143 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~i~v~~~~g~~~~~~~~~~l~~--------~-~~iiv~--l~~~ 143 (175)
.+.++||.+|++.-+.++.+.+++... ...++.+..++|+.+..++.+.+.. | ..+||+ +...
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 345899999999999999888876332 1248899999999986665544432 2 245666 4445
Q ss_pred ccCCCCceEEEE
Q psy1539 144 ETNLSGVVVNVM 155 (175)
Q Consensus 144 ~~~~~~~~~lVl 155 (175)
.+++.++++||-
T Consensus 382 GidIp~v~~VId 393 (773)
T 2xau_A 382 SLTIDGIVYVVD 393 (773)
T ss_dssp TCCCTTEEEEEE
T ss_pred CcCcCCeEEEEe
Confidence 788889987763
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.34 E-value=0.15 Score=36.77 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|+-+++.+|+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677999999999999743
No 181
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.24 E-value=0.72 Score=46.24 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=34.3
Q ss_pred CCCHHHHHHHhhCCCCCCcHHHHH-hH---HHHhcCCcEEEEcCCCChHHHHHH
Q psy1539 20 NRREKEDRIGESQPFREQTSFQHE-CI---PQAVLGMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 20 ~l~~~l~~~l~~~g~~~~t~~Q~~-~i---~~~~~g~~~ii~a~TGsGKT~~~~ 69 (175)
.|...+.+.+.+.|+. +++.+.. ++ ..+...+.+++.||||||||.++-
T Consensus 872 ~l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 872 QLRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 3456777788888875 5554433 22 233346889999999999998874
No 182
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.21 E-value=0.1 Score=36.80 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.7
Q ss_pred HhcCCcEEEEcCCCChHHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~ 67 (175)
+..|.-+++.+|+|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34577899999999999974
No 183
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.19 E-value=0.35 Score=38.34 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~ 70 (175)
.+.++++.++||+|||...-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 567999999999999965433
No 184
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.04 E-value=0.17 Score=35.45 Aligned_cols=18 Identities=33% Similarity=0.230 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
++.+++.+++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 578999999999999754
No 185
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.01 E-value=0.28 Score=35.78 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 102 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 102 (175)
.|.-+++.|++|+|||...+--+.+.... .+..+++++-. +-..++.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E-~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLE-ERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeeccc-CCHHHHHHHH
Confidence 35789999999999996544333332222 12246666533 2234444443
No 186
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.89 E-value=0.17 Score=35.89 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+.+.+|+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5778899999999999743
No 187
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.75 E-value=0.1 Score=39.65 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=27.2
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHH-HhHHHHh--cCCcEEEEcCCCChHHHHH
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQH-ECIPQAV--LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~-~~i~~~~--~g~~~ii~a~TGsGKT~~~ 68 (175)
+-..|++++-..++.+.+.+. +. .|+.. .++..+- -.+.+++.+|+|+|||...
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~-i~--~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA-IL--APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHH-HT--HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HH--HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 345677777767777777653 11 22211 1222211 1255999999999999643
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.75 E-value=0.16 Score=38.46 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
++.+++.||+|+|||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 589999999999999654
No 189
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.71 E-value=0.19 Score=34.67 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
++.+.+.+++|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999743
No 190
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.68 E-value=0.16 Score=40.96 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=31.0
Q ss_pred ccccccccCCCCHHHHHHHhhCC---CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQP---FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g---~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.|-..|++.+=-.+..+.+.+.= +.+|--++..- +..-+.+++.+|+|+|||+.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 34456777765556666565431 11111121111 112389999999999999753
No 191
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=89.63 E-value=4.7 Score=33.53 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=55.9
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHHHHHhhC---CCeEEEEEECCCch--HHhHHHHhcCC---C-eEEE--eecCccCCC
Q psy1539 80 DSNVYVLVMCHTRELAFQISKEYERFSKYM---SNIKVGVFFGGLPI--QKDEEYLKTHN---P-QIVG--LVNYETNLS 148 (175)
Q Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~i~v~~~~g~~~~--~~~~~~l~~~~---~-iiv~--l~~~~~~~~ 148 (175)
..+.++||.|++++-+..+.+.+++..... .+-.+..++|+.+. .+.++.++++. + ++++ +....++++
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 345689999999999999999988764321 12235667777643 23345565532 2 4455 566689999
Q ss_pred CceEEEEeCCCCCC
Q psy1539 149 GVVVNVMDVRSGGW 162 (175)
Q Consensus 149 ~~~~lVlDEad~~f 162 (175)
++.++|++..-.+.
T Consensus 517 ~v~~Vi~~~~~~s~ 530 (590)
T 3h1t_A 517 TCKNVVLARVVNSM 530 (590)
T ss_dssp TEEEEEEESCCCCH
T ss_pred heeEEEEEecCCCh
Confidence 99999998874443
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.51 E-value=0.17 Score=37.35 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
.+++++.+|+|+|||...
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999643
No 193
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.46 E-value=0.13 Score=42.18 Aligned_cols=55 Identities=15% Similarity=-0.023 Sum_probs=33.1
Q ss_pred ccccccccCCCCHHHHHHHhhCC---CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQP---FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g---~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.|-.+|++.+=-.+..+.|.+.= +.+|-.++.. -+.--+.+++.+|+|+|||+..
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~---Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATL---GIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHH---TCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHC---CCCCCCceEeeCCCCCcHHHHH
Confidence 44566888877777777776531 1111111111 1112489999999999999653
No 194
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=89.42 E-value=0.73 Score=37.24 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=44.7
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
+.+++|+||+++-+.++.+.++.. +.++..++|+.. .+..+.++++ .+++|+ +....++++ ++++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTF-EREYPTIKQKKPDFILATDIAEMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSC-C--------CCCSEEEESSSTTCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhH-HHHHhhhcCCCceEEEECChhheeeccC-ceEEE
Confidence 458999999999999988777654 678888888543 4455556554 567777 566688888 88877
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.36 E-value=0.18 Score=39.38 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+.+++.||+|+|||... -.+...+
T Consensus 71 ~~vLl~GppGtGKT~la-~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA-MGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHHh
Confidence 58999999999999653 3344443
No 196
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.26 E-value=0.18 Score=34.44 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999744
No 197
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.20 E-value=0.22 Score=35.12 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.++.+++.+++|||||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 198
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.20 E-value=0.22 Score=35.63 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=16.9
Q ss_pred HhcCCcEEEEcCCCChHHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~ 67 (175)
+..|+-+++++|+|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34678899999999999964
No 199
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.17 E-value=0.23 Score=36.18 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=16.6
Q ss_pred HhcCCcEEEEcCCCChHHHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~ 68 (175)
+..|+-+.+.+|+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999643
No 200
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.04 E-value=0.12 Score=42.07 Aligned_cols=55 Identities=15% Similarity=0.046 Sum_probs=30.6
Q ss_pred ccccccccCCCCHHHHHHHhhCC---CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQP---FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g---~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.|-.+|++.+=-.+..+.+.+.= +.+|.-++..- +.--+.+++.+|+|+|||+..
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 34455777765555555554430 11111111111 112389999999999999753
No 201
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.99 E-value=0.23 Score=35.71 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=16.9
Q ss_pred HHhcCCcEEEEcCCCChHHHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..|+-+.+.+|+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667899999999999999743
No 202
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.98 E-value=0.2 Score=37.21 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=30.0
Q ss_pred ccccccccCCCCHHHHHHHhhCC--CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQP--FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g--~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.+...|+++.-.+...+.+.+.- +..+..++.. .....+.+++.+|+|+|||...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 34456777766666666655420 1111111110 0112367999999999999643
No 203
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.96 E-value=0.14 Score=41.67 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=30.3
Q ss_pred ccccccccCCCCHHHHHHHhhCC---CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQP---FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g---~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.|-..|++.+=-.+..+.+.+.= +.+|--++..- +..-+.+++.||+|+|||+..
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 34456777765555555554420 11111111111 112378999999999999653
No 204
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.95 E-value=0.22 Score=34.80 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.+.-+++.+++|||||..
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356799999999999964
No 205
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.95 E-value=0.23 Score=35.01 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+-+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999743
No 206
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.88 E-value=0.43 Score=38.67 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (175)
+..+++.||+|+|||... -.+.+.+.....+..++++.. .++..+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~~v~~v~~-~~~~~~~~ 176 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS-EKFLNDLV 176 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHHHHHCCSSCEEEEEH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeH-HHHHHHHH
Confidence 368999999999999643 344444433222334555543 33444433
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.85 E-value=0.16 Score=40.42 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|..+.+.+|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4578899999999999964
No 208
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.85 E-value=0.19 Score=35.14 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~ 69 (175)
.|.-+.+.+|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 56778999999999997554
No 209
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.72 E-value=0.24 Score=35.90 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~ 68 (175)
..|+-+++.+|+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 46788999999999999643
No 210
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.71 E-value=1.3 Score=36.44 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=38.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.|....+.+-||||||++..- +... .+...|+|+|+...|.|+++.++.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER-----HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH-----SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH-----hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 466788999999999864322 2222 12248999999999999999998875
No 211
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.71 E-value=0.2 Score=39.40 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
++-++|.+|||+|||... ..+..++
T Consensus 40 ~~lIvI~GPTgsGKTtLa-~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS-IDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHTTS
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHC
Confidence 356899999999999543 3444443
No 212
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.70 E-value=0.21 Score=37.38 Aligned_cols=16 Identities=25% Similarity=0.092 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+++.+|+|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4689999999999644
No 213
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=88.69 E-value=1.1 Score=40.90 Aligned_cols=56 Identities=21% Similarity=0.154 Sum_probs=41.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcC---------CCCeEEEEEecCHHHHHHHHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETT---------DSNVYVLVMCHTRELAFQISKEYERFS 106 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (175)
.|.+ +|.|+-|||||.+..-=++..+... -.-.+.|+|+=|++=+.+..+.++...
T Consensus 16 ~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 16 QGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 4555 9999999999988776666666431 122379999999988888888776654
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.68 E-value=0.43 Score=36.63 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
|+-+.+.+++|+|||...
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567899999999999754
No 215
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.65 E-value=0.24 Score=35.31 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+++.+|+|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4788999999999999753
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.63 E-value=0.69 Score=33.54 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~ 70 (175)
.|.-+.+.+|+|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 467899999999999965543
No 217
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.54 E-value=0.25 Score=35.42 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChHHHH
Q psy1539 52 MDILCQAKSGMGKTAV 67 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~ 67 (175)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999964
No 218
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.50 E-value=0.25 Score=36.22 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=16.7
Q ss_pred HHhcCCcEEEEcCCCChHHHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..|+-+++.+|+|+|||...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 3456888999999999999743
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.49 E-value=0.21 Score=36.40 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|+-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 467799999999999843
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.43 E-value=0.36 Score=37.08 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+.++++.+++|+|||...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4689999999999999653
No 221
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.35 E-value=0.82 Score=37.99 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+.+++|.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 3578999999999999654
No 222
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.32 E-value=0.23 Score=38.73 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=16.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQ 75 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~ 75 (175)
+-++|.+|||||||... ..+...
T Consensus 4 ~~i~i~GptgsGKt~la-~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS-VMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHH-HHHHHT
T ss_pred cEEEEECCCcCCHHHHH-HHHHHh
Confidence 45788999999999543 344443
No 223
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.27 E-value=0.94 Score=35.03 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+..+++.||+|+|||... -.+...+
T Consensus 45 ~~~vli~G~~G~GKTtl~-~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV-KFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 578999999999999643 3344443
No 224
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.24 E-value=0.22 Score=34.56 Aligned_cols=19 Identities=32% Similarity=0.162 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|..+++.+++|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999754
No 225
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.18 E-value=0.72 Score=35.66 Aligned_cols=54 Identities=9% Similarity=-0.066 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcC---CCCeEEEEEecCHHH-HHHHHHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCHTREL-AFQISKEYER 104 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt~~L-~~q~~~~~~~ 104 (175)
|.-+++.+++|+|||.....-+.+..... ..+.+++++.-...+ ..++.+.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999965444333322210 013467887754322 3344444433
No 226
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.18 E-value=0.24 Score=38.55 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=15.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHh
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQ 75 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~ 75 (175)
-+++++|||||||... ..+...
T Consensus 12 ~i~i~GptgsGKt~la-~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALA-IELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHH
T ss_pred EEEEECCCccCHHHHH-HHHHHh
Confidence 4788999999999543 334443
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.17 E-value=0.35 Score=34.56 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=22.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.|.-+++.+|+|+|||.....-+. . .+..++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEEC
Confidence 457789999999999965433222 1 2335666653
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.05 E-value=2.9 Score=32.17 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.8
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+-+.+.+++|+|||...
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35789999999999654
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.05 E-value=0.77 Score=32.89 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+.+.+|+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4688999999999999543
No 230
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.80 E-value=0.61 Score=35.31 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=24.0
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 49 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
..|.-+++.+|+|+|||.... -++..+... .+..++++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~-~ia~~~~~~-~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR-QQALQWGTA-MGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH-HHHHHHHHT-SCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHH-HHHHHHHHH-cCCeEEEEe
Confidence 357889999999999996443 333333322 232465654
No 231
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=87.74 E-value=0.42 Score=37.89 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=18.1
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 45 IPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 45 i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
+..+++|.| ++..+.||||||.+.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 345567866 677889999999775
No 232
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.72 E-value=0.26 Score=38.15 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=29.3
Q ss_pred ccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHh-----cCCcEEEEcCCCChHHHHH
Q psy1539 13 VKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAV-----LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 13 ~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~-----~g~~~ii~a~TGsGKT~~~ 68 (175)
-..|++++=.....+.+.+.= . .|.+. |.+. ..+.+++.+|+|+|||...
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v-~--~p~~~---~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV-I--LPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH-H--HHHHC---GGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH-H--HHHhC---HHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 346777766666666665420 0 11110 1121 2378999999999999643
No 233
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.70 E-value=0.75 Score=35.84 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
++.+++.+|+|+|||... -.+.+.+
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 367999999999999653 3334433
No 234
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.64 E-value=0.99 Score=31.78 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=16.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
+-+.+.+++|+|||. ++-.++..+.
T Consensus 7 ~~i~i~G~sGsGKTT-l~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTT-LLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHH-HHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHH-HHHHHHHhcc
Confidence 357889999999995 3344444443
No 235
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.61 E-value=0.28 Score=33.90 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+++.+++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999643
No 236
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=87.61 E-value=2 Score=34.93 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEEC--------CCchHHh---HHHH
Q psy1539 62 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG--------GLPIQKD---EEYL 130 (175)
Q Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g--------~~~~~~~---~~~l 130 (175)
++|.. .+.-++........+.++||.+++++-+..+.+.++...... .+++..++| +.+..+. .+.+
T Consensus 370 ~~k~~-~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 370 NPKLR-DLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALS-FLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp CHHHH-HHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGT-TCCEEECCC----------------------
T ss_pred CHHHH-HHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcC-ceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 55643 334444444333345689999999999999999888764322 455555554 4443332 3345
Q ss_pred hc-C-CCeEEE--eecCccCCCCceEEEEeCC
Q psy1539 131 KT-H-NPQIVG--LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 131 ~~-~-~~iiv~--l~~~~~~~~~~~~lVlDEa 158 (175)
++ + .+++|+ .....+++.+++++|.=+.
T Consensus 448 ~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 448 RASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp ----CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred hcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 54 3 478887 5555788888888876544
No 237
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.60 E-value=0.28 Score=33.64 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.59 E-value=0.25 Score=37.70 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=17.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
+.+++.+|+|+|||... -.+...+
T Consensus 37 ~~lLl~GppGtGKT~la-~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC-ELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHH-HHHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHh
Confidence 57899999999999643 3344443
No 239
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.57 E-value=0.52 Score=33.63 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999643
No 240
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.53 E-value=0.21 Score=34.97 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|..+++.+++|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567899999999999753
No 241
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.40 E-value=0.46 Score=34.13 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=22.6
Q ss_pred CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 37 QTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.++.++.. .....|..+++.+++|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 34555555 34556888999999999999643
No 242
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=87.35 E-value=0.79 Score=33.11 Aligned_cols=39 Identities=13% Similarity=-0.036 Sum_probs=28.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
.|+=.++.+|.|||||...+-.+-+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 36778999999999996655544444332 3578999887
No 243
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.33 E-value=0.84 Score=32.12 Aligned_cols=24 Identities=13% Similarity=-0.055 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
-+.+.+++|||||.. +.-++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 467899999999953 334444444
No 244
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.29 E-value=0.87 Score=33.39 Aligned_cols=40 Identities=10% Similarity=-0.018 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
|+=.++.++-|||||.+.+--+.+... .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccC
Confidence 444567888899999765544444333 3457999998764
No 245
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.13 E-value=0.29 Score=38.07 Aligned_cols=19 Identities=37% Similarity=0.331 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+.++++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3578999999999999643
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.05 E-value=0.3 Score=36.07 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=30.8
Q ss_pred ccccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHh--cCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAV--LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~--~g~~~ii~a~TGsGKT~~~ 68 (175)
.+...|+++.-.+...+.+++.-.. .. ...++..+. -.+.+++.+|+|+|||...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3455677776666666666543110 00 012222221 1256999999999999643
No 247
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.99 E-value=1.4 Score=33.27 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATA 55 (319)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CeEEEECcCCcCHHHHH
Confidence 36999999999999643
No 248
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=86.96 E-value=0.52 Score=36.81 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 34567866 677889999999875
No 249
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.91 E-value=0.37 Score=36.52 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
..+++.+|+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 47999999999999654
No 250
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.91 E-value=0.19 Score=40.83 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
.+.+++.+|+|+|||...
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 378999999999999654
No 251
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.76 E-value=0.32 Score=39.53 Aligned_cols=25 Identities=44% Similarity=0.581 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
++++++.+|+|+|||... -.+...+
T Consensus 63 ~~~iLl~GppGtGKT~la-~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA-LAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCcCCHHHHH-HHHHHHh
Confidence 368999999999999654 3344433
No 252
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.76 E-value=0.36 Score=35.22 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.9
Q ss_pred HhcCCcEEEEcCCCChHHHHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~~ 69 (175)
+..|.-+.+.+|+|+|||...-
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 4467889999999999996543
No 253
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.74 E-value=0.88 Score=35.07 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.|.-+++.|++|+|||...+ -++..... ++..+++++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l-~ia~~~a~--~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFAL-KQAKNMSD--NDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHH-HHHHHHHT--TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH--cCCeEEEEEC
Confidence 45779999999999995443 33333222 2346777764
No 254
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.71 E-value=0.36 Score=38.02 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
..++++.+|+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999654
No 255
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.67 E-value=0.35 Score=37.31 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.+|+|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 68999999999999654
No 256
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.67 E-value=0.36 Score=37.93 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
.+++++.+|+|+|||...
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 368999999999999654
No 257
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=86.56 E-value=0.49 Score=37.26 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=17.5
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34567866 577889999999875
No 258
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.50 E-value=0.9 Score=34.98 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
|.-+.+.+|+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 567889999999999743
No 259
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.48 E-value=0.32 Score=34.65 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=21.2
Q ss_pred CcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 37 QTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 37 ~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..+.... ....|.-+.+.+|+|||||...
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 444544433 2345788999999999999653
No 260
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.43 E-value=0.79 Score=35.81 Aligned_cols=42 Identities=7% Similarity=-0.105 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCC---CCeEEEEEecCH
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTD---SNVYVLVMCHTR 92 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~Pt~ 92 (175)
|.-+.+.+|+|+|||.....-+........ .+.+++++....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 356899999999999654433333222210 244678887543
No 261
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=86.39 E-value=1.2 Score=37.92 Aligned_cols=76 Identities=11% Similarity=0.147 Sum_probs=50.3
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHH--HhhCCCeEEEEEECC--------CchHHhHH---HHhcC-CCeEEE--eecCcc
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERF--SKYMSNIKVGVFFGG--------LPIQKDEE---YLKTH-NPQIVG--LVNYET 145 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~--~~~~~~i~v~~~~g~--------~~~~~~~~---~l~~~-~~iiv~--l~~~~~ 145 (175)
+.++||.++++..+..+.+.++.. .... ++++..++|+ .+..++.+ .+++| .+++|+ +....+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~-g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEV-GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCcccccc-CcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 568999999999999988887754 1111 6788889998 66554443 34443 477887 555578
Q ss_pred CCCCceEEEEeCC
Q psy1539 146 NLSGVVVNVMDVR 158 (175)
Q Consensus 146 ~~~~~~~lVlDEa 158 (175)
++++++++|.=+.
T Consensus 479 Dip~v~~VI~~d~ 491 (699)
T 4gl2_A 479 DIKECNIVIRYGL 491 (699)
T ss_dssp CCCSCCCCEEESC
T ss_pred ccccCCEEEEeCC
Confidence 8888888876554
No 262
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.35 E-value=0.44 Score=35.69 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~ 68 (175)
+.|+.+++.+++|||||...
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34999999999999999754
No 263
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=86.31 E-value=1.8 Score=38.77 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHh---HHHHhcC---CCeEEE--eecCccCCCCceE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTH---NPQIVG--LVNYETNLSGVVV 152 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~---~~~l~~~---~~iiv~--l~~~~~~~~~~~~ 152 (175)
.+.+++|.|+++.-+..+.+.++. .. ++++..++|+.+..+. .+.++++ .+++|+ +....+++.++.+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~---~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~ 577 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRE---RE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASH 577 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHT---TT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHH---Hc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcE
Confidence 455899999999988877666653 23 7889999999775433 3456665 566666 4445889999999
Q ss_pred EEEeCCCCCCHHHH
Q psy1539 153 NVMDVRSGGWWLDL 166 (175)
Q Consensus 153 lVlDEad~~f~~~v 166 (175)
+|+-+...+....+
T Consensus 578 VI~~d~p~~~~~~~ 591 (968)
T 3dmq_A 578 MVMFDLPFNPDLLE 591 (968)
T ss_dssp EECSSCCSSHHHHH
T ss_pred EEEecCCCCHHHHH
Confidence 99888765444333
No 264
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.26 E-value=0.21 Score=40.60 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=31.2
Q ss_pred ccccccccCCCCHHHHHHHhhC---CCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQ---PFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~---g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.+-.+|++.+=-.+..+.+.+. -+.+|--++..-+ .--+.+++.+|+|+|||+..
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 4455677775445555555442 1112222222211 12388999999999999743
No 265
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.16 E-value=4.1 Score=31.02 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
++-+.+.+++|+|||...
T Consensus 98 ~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SEEEEEECCTTTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778899999999643
No 266
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=86.13 E-value=0.61 Score=36.71 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=17.5
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34567866 577789999999875
No 267
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.10 E-value=2 Score=42.62 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=32.8
Q ss_pred CCHHHHHHHhhCCCCCCcHHHHHhH----HHHhcCCcEEEEcCCCChHHHHHH
Q psy1539 21 RREKEDRIGESQPFREQTSFQHECI----PQAVLGMDILCQAKSGMGKTAVFV 69 (175)
Q Consensus 21 l~~~l~~~l~~~g~~~~t~~Q~~~i----~~~~~g~~~ii~a~TGsGKT~~~~ 69 (175)
+...+.+.+.+.|+. +++.+..-+ ..+...+.+++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345566777777775 555543322 333456899999999999998763
No 268
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=86.05 E-value=2 Score=36.43 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEEC--------CCchHHhH---HHH
Q psy1539 62 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG--------GLPIQKDE---EYL 130 (175)
Q Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g--------~~~~~~~~---~~l 130 (175)
+.|. ..+.-++........+.++||.+++++-+..+.+.++..... +++++..++| +.+..++. +.+
T Consensus 379 ~~k~-~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~-~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 379 NPKL-EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp CHHH-HHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTC-CSCCEEC-------------------------
T ss_pred CHHH-HHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCc-cccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 4443 233334443322234568999999999999988888765322 1367777755 55443333 334
Q ss_pred hc--CCCeEEE--eecCccCCCCceEEEEeCC
Q psy1539 131 KT--HNPQIVG--LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 131 ~~--~~~iiv~--l~~~~~~~~~~~~lVlDEa 158 (175)
++ ...++|+ .....+++.+++++|.=+.
T Consensus 457 ~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 457 KASGDHNILIATSVADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp ----CCSCSEEEESSCCC---CCCSEEEEESC
T ss_pred HhcCCccEEEEechhhcCCcCccCCEEEEeCC
Confidence 43 3578888 5555888899999887555
No 269
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=85.96 E-value=0.62 Score=36.86 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=17.2
Q ss_pred HHhcCCc--EEEEcCCCChHHHHH
Q psy1539 47 QAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 47 ~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
.+++|.| ++..+.||||||.+.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 4567865 677889999999875
No 270
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=85.95 E-value=0.62 Score=36.99 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=17.7
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34567865 677889999999875
No 271
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.93 E-value=0.28 Score=34.49 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.-+++.+|+|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45789999999999754
No 272
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=85.90 E-value=0.65 Score=36.62 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=19.1
Q ss_pred hHHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 44 CIPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 44 ~i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
.+..+++|.| ++..+.||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 3455678876 567789999999876
No 273
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=85.90 E-value=0.61 Score=37.16 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=17.4
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34567865 567889999999874
No 274
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=85.89 E-value=0.63 Score=36.73 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=17.2
Q ss_pred HHhcCCc--EEEEcCCCChHHHHH
Q psy1539 47 QAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 47 ~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
.+++|.| ++..+.||||||.+.
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceeEEeecCCCCCCCEEe
Confidence 4567865 677889999999875
No 275
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.83 E-value=0.46 Score=33.31 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~ 68 (175)
..+..+++.+++|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35678999999999999753
No 276
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.83 E-value=0.29 Score=35.73 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=12.7
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~ 68 (175)
..|+-+.+.+|+|||||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999653
No 277
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.82 E-value=0.4 Score=37.65 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
.+.+++.+|+|+|||...
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999654
No 278
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.79 E-value=0.63 Score=37.45 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=19.2
Q ss_pred hHHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 44 CIPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 44 ~i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
.+..+++|.| ++..+.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 3455678876 567789999999876
No 279
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=85.74 E-value=0.63 Score=36.78 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=17.6
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34567865 677889999999875
No 280
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=85.73 E-value=0.71 Score=36.13 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=19.3
Q ss_pred hHHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 44 CIPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 44 ~i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
.+..+++|.| ++..+.||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 3455678876 667889999999775
No 281
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.70 E-value=0.61 Score=35.90 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56999999999999643
No 282
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=85.67 E-value=0.36 Score=33.73 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.-+++.+++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 283
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=85.66 E-value=2.3 Score=34.17 Aligned_cols=65 Identities=9% Similarity=-0.000 Sum_probs=45.8
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcC-CCeEEE--eecCccCCCCceEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH-NPQIVG--LVNYETNLSGVVVN 153 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~iiv~--l~~~~~~~~~~~~l 153 (175)
+.+++|++|+++-+..+.+.+++. +.++..++|+.. .+..+.+++| .+++|+ +....++++ +..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTDISEMGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECchHHcCcccC-CcEE
Confidence 347999999999999888777654 677888998743 3444555554 577887 555667776 4443
No 284
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=85.60 E-value=0.4 Score=37.99 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
.+++++.+|+|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 479999999999999654
No 285
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.58 E-value=0.34 Score=34.82 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467788999999999964
No 286
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.56 E-value=0.93 Score=36.83 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.|.-+++.|++|+|||...+ -++...... +..+++++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal-~ia~~~a~~--g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFAL-KQAKNMSDN--DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHH-HHHHHHHHT--TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHH-HHHHHHHHc--CCEEEEEEC
Confidence 35679999999999996544 333333322 446777764
No 287
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=85.55 E-value=0.71 Score=36.64 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=17.6
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 44567865 677889999999765
No 288
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=85.53 E-value=0.69 Score=37.31 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=17.6
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 34567865 677889999999875
No 289
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.53 E-value=0.18 Score=37.52 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
.+.+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999654
No 290
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.50 E-value=0.37 Score=35.63 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCChHHH
Q psy1539 49 VLGMDILCQAKSGMGKTA 66 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~ 66 (175)
..|.-+.+.+|+|||||.
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 357889999999999996
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.49 E-value=0.38 Score=33.69 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.-+++.+++|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 292
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.48 E-value=0.4 Score=37.75 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-++|.+|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999643
No 293
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=85.48 E-value=0.7 Score=36.44 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=17.7
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 34567865 667889999999876
No 294
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=85.47 E-value=0.7 Score=36.58 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=17.9
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 45 IPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 45 i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
+..+++|.| ++..+.||||||.+.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344567876 566789999999775
No 295
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=85.46 E-value=0.7 Score=36.53 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 45 IPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 45 i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
+..+++|.| ++..+.||||||.+.
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 345567876 577789999999875
No 296
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.40 E-value=1.2 Score=32.26 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=27.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
-.+++..++|.|||.+++--.+..+. .|.+++++-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEE
Confidence 58999999999999888776666665 355777773
No 297
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.36 E-value=0.4 Score=37.48 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+.+++++|||||||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36899999999999643
No 298
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=85.32 E-value=0.45 Score=33.58 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+.+.+|+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999643
No 299
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=85.26 E-value=0.43 Score=33.93 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+-+++.|++|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57999999999999754
No 300
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.17 E-value=0.32 Score=37.15 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
..++++.+|+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 378999999999999653
No 301
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.08 E-value=0.44 Score=35.79 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=30.8
Q ss_pred cccccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHh--cCCcEEEEcCCCChHHHHH
Q psy1539 12 TVKVLSSRNRREKEDRIGESQPFREQTSFQHECIPQAV--LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 12 ~~~~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~--~g~~~ii~a~TGsGKT~~~ 68 (175)
+...|+++.-.++..+.+.+.-.. .. ....+..+. -.+.+++.+|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456677777777776666553110 00 011222211 1246999999999999643
No 302
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.03 E-value=0.4 Score=34.24 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+.+.+|+|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3556789999999999743
No 303
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=84.97 E-value=0.72 Score=36.53 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=17.5
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCCceEE
Confidence 34567865 677889999999765
No 304
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.96 E-value=0.43 Score=33.23 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|..+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677899999999999743
No 305
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=84.81 E-value=0.69 Score=36.46 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=18.1
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 45 IPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 45 i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
+..+++|.| ++..+.||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEec
Confidence 334567866 667889999999875
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.72 E-value=0.52 Score=32.63 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+.+++.+++|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999654
No 307
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.72 E-value=0.54 Score=33.19 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|+.+++.++.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4678999999999999743
No 308
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=84.62 E-value=0.73 Score=37.21 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=19.1
Q ss_pred hHHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 44 CIPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 44 ~i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
.+..+++|.| ++..+.||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 3456678876 577789999999875
No 309
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=84.54 E-value=0.75 Score=36.86 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=17.3
Q ss_pred HHhcCCc--EEEEcCCCChHHHHH
Q psy1539 47 QAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 47 ~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
.+++|.| ++..+.||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 4567866 667889999999875
No 310
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=84.53 E-value=0.68 Score=36.82 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 45 IPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 45 i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
+..+++|.| ++..+.||||||.+.
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHhhhcCCceEEEEECCCCCCCeEee
Confidence 455678876 566789999999875
No 311
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.51 E-value=0.83 Score=35.26 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=12.7
Q ss_pred cEEEEcCCCChHHHH
Q psy1539 53 DILCQAKSGMGKTAV 67 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~ 67 (175)
-+++.++.|||||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 367899999999964
No 312
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.51 E-value=1.3 Score=34.70 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
|+-+.+.+|+|+|||...+.-+..... .+.+++++...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECC
Confidence 477999999999999654443333322 23357777643
No 313
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.40 E-value=0.52 Score=33.77 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.39 E-value=0.26 Score=35.23 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=17.0
Q ss_pred HHhcCCcEEEEcCCCChHHHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..+.-+.+.+++|||||...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 3445667889999999999643
No 315
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.36 E-value=0.52 Score=36.58 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
..+++.+|+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999653
No 316
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=84.32 E-value=0.6 Score=32.78 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+.-+++.+++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999653
No 317
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.32 E-value=1.9 Score=33.50 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCChHHHH
Q psy1539 51 GMDILCQAKSGMGKTAV 67 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~ 67 (175)
|.-+.+.+|+|+|||..
T Consensus 129 g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56788999999999974
No 318
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.31 E-value=0.7 Score=35.98 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=21.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (175)
.+++.||+|+|||... -.+...+.... +...+.+.
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~~~~~-~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELYKDKT-TARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHTTSC-CCEEEEEE
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhhhc-CeeEEEEe
Confidence 7999999999999654 33444443211 23445544
No 319
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=84.29 E-value=1.8 Score=36.50 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhc-CCCCeEEEEEecC
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHT 91 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt 91 (175)
+.+++|.+.||||||.+.-.-++..+.. .....+.+++=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4689999999999996644333333322 1234445544444
No 320
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.27 E-value=0.41 Score=36.51 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.-++++||+|||||...
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999643
No 321
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=84.23 E-value=0.78 Score=36.51 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHhcCCc--EEEEcCCCChHHHHH
Q psy1539 47 QAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 47 ~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
.+++|.| ++..+.||||||.+.
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 4567865 677889999999764
No 322
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=84.21 E-value=0.78 Score=36.72 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=17.7
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeEe
Confidence 34567865 677889999999875
No 323
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.15 E-value=0.49 Score=38.19 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=15.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHh
Q psy1539 53 DILCQAKSGMGKTAVFVLATLQQ 75 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~~~l~~ 75 (175)
-++|.+|||||||... ..+...
T Consensus 4 ~i~i~GptgsGKttla-~~La~~ 25 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS-IQLAQK 25 (409)
T ss_dssp EEEEEECSSSSHHHHH-HHHHHH
T ss_pred EEEEECcchhhHHHHH-HHHHHH
Confidence 3689999999999543 334443
No 324
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=84.14 E-value=0.59 Score=33.70 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..+++.++.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999653
No 325
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.12 E-value=0.56 Score=34.25 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..+++.+++|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4578999999999999643
No 326
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=84.10 E-value=1.5 Score=37.55 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=47.3
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
+.++||++|+++-++.+.+.+++. ++++..++|+. ..+..+.++++ .+++|+ +....++++ ++++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHH-HHHHHHHHHCCCceEEEECchhhcceeeC-CcEEE
Confidence 458999999999998877766543 77888899853 23344455544 467787 666678888 87766
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.99 E-value=0.64 Score=32.37 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
..+++.+++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999754
No 328
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=83.95 E-value=0.56 Score=33.65 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.+++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 329
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.91 E-value=1.7 Score=36.67 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.1
Q ss_pred HHHhcCCcEEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
..+..|..+++.+|+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 45567899999999999999643
No 330
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=83.84 E-value=0.92 Score=36.97 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 46 PQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 46 ~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
..+++|.| ++..+.||||||.+.
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34567866 677889999999875
No 331
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.81 E-value=0.49 Score=35.02 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999963
No 332
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.74 E-value=1.6 Score=34.46 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
|+-+++.+++|+|||...+.-+.. ... .+..++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~-~~~--~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA-AQR--EGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH-HHH--TTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH--CCCeEEEEeC
Confidence 477999999999999655433333 222 2335777765
No 333
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.66 E-value=1.2 Score=35.98 Aligned_cols=39 Identities=28% Similarity=0.210 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.|.-+++.|++|+|||... +-++...... .+..++++..
T Consensus 199 ~G~l~ii~G~pg~GKT~la-l~ia~~~a~~-~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFA-LTIAQNAALK-EGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHHT-TCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHHh-CCCeEEEEEC
Confidence 3567899999999999544 4343333221 2335777764
No 334
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=83.61 E-value=0.59 Score=33.92 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467999999999999753
No 335
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.54 E-value=1.5 Score=34.36 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=25.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.|.-+++.|++|+|||... +-++..+.. .+..++|++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~a-l~ia~~~a~--~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM-MNMVLSALN--DDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHH--TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH--cCCeEEEEeC
Confidence 4577999999999999544 333333332 3446777764
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=83.52 E-value=0.51 Score=33.47 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+++.++.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4567899999999999643
No 337
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=83.51 E-value=1.2 Score=36.10 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.|.-+++.|++|+|||... +-++..+... .+..++++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~-l~ia~~~~~~-~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFA-LNIAQNVATK-TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHH-HHHHHHHHHH-SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHHHh-CCCcEEEEEC
Confidence 4578999999999999544 4343333221 2335777764
No 338
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=83.50 E-value=0.9 Score=36.00 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.0
Q ss_pred cCCc--EEEEcCCCChHHHHH
Q psy1539 50 LGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~--~ii~a~TGsGKT~~~ 68 (175)
.|.| ++..+.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 689999999999775
No 339
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=83.48 E-value=0.61 Score=31.98 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.++.|||||...
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999754
No 340
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=83.46 E-value=2.6 Score=31.75 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=47.8
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.+++++-+..+.+.++ .+..++|+.+..+..+ .++++ ..++|+ .....+++++++++|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 289 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI 289 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEE
Confidence 45579999999988876554433 3567788877554433 33443 467777 555688899999998
Q ss_pred EeCCC
Q psy1539 155 MDVRS 159 (175)
Q Consensus 155 lDEad 159 (175)
.-...
T Consensus 290 ~~~~~ 294 (337)
T 2z0m_A 290 NFDAP 294 (337)
T ss_dssp ESSCC
T ss_pred EecCC
Confidence 86654
No 341
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=83.46 E-value=1 Score=34.58 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
|.-+.+.+|+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456789999999999753
No 342
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.40 E-value=0.56 Score=32.59 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-.++.+|+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678999999999653
No 343
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.31 E-value=0.55 Score=37.11 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999765
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=83.31 E-value=0.63 Score=33.51 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+..+.+.+|+|||||...
T Consensus 5 ~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC 22 (227)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356889999999999754
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=83.30 E-value=0.55 Score=32.85 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|..+++.++.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4677999999999999654
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.27 E-value=0.67 Score=31.77 Aligned_cols=17 Identities=29% Similarity=0.256 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+.+++.+++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999754
No 347
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=83.26 E-value=0.62 Score=31.81 Aligned_cols=15 Identities=27% Similarity=0.373 Sum_probs=12.6
Q ss_pred cEEEEcCCCChHHHH
Q psy1539 53 DILCQAKSGMGKTAV 67 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~ 67 (175)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357899999999965
No 348
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.20 E-value=0.32 Score=37.55 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
..++++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 467999999999999653
No 349
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.15 E-value=0.56 Score=34.24 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=21.6
Q ss_pred CCCCceEEEEeCC----CCCCHHHHHHHHhh
Q psy1539 146 NLSGVVVNVMDVR----SGGWWLDLEALILS 172 (175)
Q Consensus 146 ~~~~~~~lVlDEa----d~~f~~~v~~il~~ 172 (175)
...+-+++++||. |......+.++|.+
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 178 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 178 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 4567899999999 77788888877764
No 350
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.15 E-value=0.7 Score=32.75 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+..+++.+++|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457999999999999753
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.08 E-value=0.69 Score=33.36 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+..+++.+++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467999999999999754
No 352
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.02 E-value=0.71 Score=32.92 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
|.-+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456789999999999743
No 353
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.97 E-value=0.69 Score=40.58 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=33.4
Q ss_pred ccccccccCCCCHHHHHHHhhCC-CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQP-FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g-~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.+-..|++.+.-.+..+.|.+.= +....|.+..-+ .+...+.+++.+|+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 34456778887888888877652 111111110000 0112378999999999999654
No 354
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=82.91 E-value=0.9 Score=36.22 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=18.0
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 45 IPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 45 i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
+..+++|.| ++..+.||||||.+.
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 345567865 667789999999765
No 355
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=82.82 E-value=0.6 Score=32.48 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.++.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999643
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.78 E-value=0.69 Score=32.85 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+++.++.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999753
No 357
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.73 E-value=0.61 Score=38.46 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
.+++++.+|+|+|||...
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 478999999999999754
No 358
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=82.69 E-value=1.2 Score=38.28 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=47.2
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcCCCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.++|++-++++.+.+++. ++++..++|+.+..+. .+.+.+++|+ +....++++ ++++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~er---~~~~~~VLVATdVaerGIDId-V~~VI 461 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSVI---PTIGDVVVVATDALMTGYTGD-FDSVI 461 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGGS---CSSSCEEEEECTTHHHHCCCC-BSEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHHH---HhCCCcEEEECChHHccCCCC-CcEEE
Confidence 3458999999999998877777642 7889999999875432 2345577777 455567775 88776
No 359
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.65 E-value=0.62 Score=37.93 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.+|+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999654
No 360
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.64 E-value=0.65 Score=33.33 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+.+.+|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999644
No 361
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=82.64 E-value=3.2 Score=32.25 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+.+.||+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999753
No 362
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=82.59 E-value=1.8 Score=32.06 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.2
Q ss_pred cEEEEcCCCChHHHHHHH
Q psy1539 53 DILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~~ 70 (175)
++++.++.|+|||...+-
T Consensus 8 ~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 689999999999976543
No 363
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=82.57 E-value=0.73 Score=32.76 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+.-+++.++.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5678999999999999754
No 364
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.35 E-value=0.99 Score=34.17 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.||+|+|||...
T Consensus 47 ~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 37999999999999653
No 365
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=82.32 E-value=0.57 Score=35.61 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|||||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999973
No 366
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.31 E-value=0.59 Score=34.82 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|||||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 367
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.16 E-value=0.62 Score=35.00 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|||||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 368
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=82.15 E-value=16 Score=29.44 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC--C
Q psy1539 60 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH--N 134 (175)
Q Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~--~ 134 (175)
..++|... +.-++..... .+.+++|.+.+++.+..+.+.++... +..+..++|+.+..+.. +.++++ .
T Consensus 322 ~~s~K~~~-l~~~l~~~~~--~~~k~lvF~~~~~~~~~l~~~l~~~~----~~~~~~~~g~~~~~~R~~~~~~F~~~~~~ 394 (500)
T 1z63_A 322 RRSGKMIR-TMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSV 394 (500)
T ss_dssp TTCHHHHH-HHHHHHHHHT--TTCCEEEECSCHHHHHHHHHHHHHHH----TCCCCEEETTSCHHHHHHHHHHHHHCTTC
T ss_pred hcchhHHH-HHHHHHHHHc--cCCcEEEEEehHHHHHHHHHHHHHhh----CCCeEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 34666533 3333433332 45589999999999888777776532 56677889998754443 345555 3
Q ss_pred C-eEEE--eecCccCCCCceEEEEeCCCCC
Q psy1539 135 P-QIVG--LVNYETNLSGVVVNVMDVRSGG 161 (175)
Q Consensus 135 ~-iiv~--l~~~~~~~~~~~~lVlDEad~~ 161 (175)
. ++++ .....+++...+.+|+=+....
T Consensus 395 ~vil~st~~~~~Glnl~~~~~vi~~d~~~~ 424 (500)
T 1z63_A 395 KFIVLSVKAGGFGINLTSANRVIHFDRWWN 424 (500)
T ss_dssp CCCEEECCCC-CCCCCTTCSEEEESSCCSC
T ss_pred CEEEEecccccCCCchhhCCEEEEeCCCCC
Confidence 3 3444 3344788888988888776433
No 369
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.14 E-value=1.1 Score=32.31 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q psy1539 53 DILCQAKSGMGKTAVFV 69 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~~ 69 (175)
-.++.|+.|||||....
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46899999999997543
No 370
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.12 E-value=0.7 Score=32.76 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+.+.+++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999753
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.10 E-value=0.68 Score=32.18 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+-+++.+++|||||...
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999753
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.07 E-value=0.74 Score=31.42 Aligned_cols=16 Identities=25% Similarity=0.061 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999753
No 373
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=82.04 E-value=1.9 Score=32.01 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=28.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (175)
.|+=.++.++-|+|||.+.+--+.+... .+.+++++-|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeecCC
Confidence 3666778888899999766554444433 4557888888653
No 374
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.03 E-value=0.76 Score=33.80 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.-+.+.+|+|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 578999999999999643
No 375
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=81.96 E-value=2.2 Score=34.50 Aligned_cols=65 Identities=8% Similarity=-0.066 Sum_probs=46.4
Q ss_pred eEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 83 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.++||.+|++.-++++.+.+++. ++.+..++|+.. .+..+.++++ .+++|+ +....+++++ +++|
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEE
Confidence 37999999999998877776543 677888888765 3344445544 467777 6666788888 6665
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=81.91 E-value=0.78 Score=34.08 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|..+.+.+|+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 377
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.86 E-value=0.8 Score=33.62 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|+-+.+.+|+|+|||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999963
No 378
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.61 E-value=0.8 Score=34.39 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=19.3
Q ss_pred HHhcCCcEEEEcCCCChHHHHHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~~~~~ 70 (175)
-+..|.-+.+.+|+|+|||.....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHH
Confidence 455788999999999999965443
No 379
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=81.59 E-value=0.74 Score=32.71 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+.+.++.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999754
No 380
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.58 E-value=1.3 Score=36.65 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+.+++.||+|+|||...
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999654
No 381
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.54 E-value=0.63 Score=35.10 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|||||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3578899999999999973
No 382
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=81.35 E-value=0.82 Score=35.35 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|+-+.+.+|+|+|||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 578999999999999964
No 383
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=81.33 E-value=0.55 Score=34.81 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999974
No 384
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.22 E-value=0.69 Score=34.77 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|+|||..
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999973
No 385
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=81.21 E-value=0.83 Score=33.42 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|+|||..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578889999999999963
No 386
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.18 E-value=2.1 Score=33.81 Aligned_cols=38 Identities=18% Similarity=0.078 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecC
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 91 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (175)
|.-+++.+++|+|||... +.++..... .+..++++...
T Consensus 74 G~li~I~G~pGsGKTtla-l~la~~~~~--~g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLA-LAIVAQAQK--AGGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHHH--TTCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHH-HHHHHHHHH--CCCeEEEEECC
Confidence 467899999999999644 444433322 23356666643
No 387
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=81.14 E-value=0.85 Score=32.86 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+..+++.+++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467899999999999643
No 388
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.13 E-value=1.1 Score=36.51 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
..++++.+|+|+|||... -.+...+
T Consensus 201 ~~~~LL~G~pG~GKT~la-~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA-EGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 478999999999999654 3344444
No 389
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.12 E-value=0.9 Score=35.06 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=25.6
Q ss_pred ccccCCCCHHHHHHHhhCCCCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 15 VLSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 15 ~~~~~~l~~~l~~~l~~~g~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.|+++--++.+.+.+.+.-+.. -...++++.||+|+|||...
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 3555545666666665531010 12245999999999999653
No 390
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.11 E-value=0.88 Score=34.02 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3578899999999999973
No 391
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=81.11 E-value=1.3 Score=34.22 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+.|.||+|||||...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3556889999999999643
No 392
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.09 E-value=0.89 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|+|||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999974
No 393
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=81.08 E-value=0.31 Score=39.56 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=0.0
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
..+++|.||++.-+..+.+.+... +..+..++|+.+..+.. +.++++ .+++|+ +....+++++++++|
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 406 (479)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE
Confidence 357999999999988877776654 56788888887654333 233333 467777 566678888888887
No 394
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.07 E-value=0.58 Score=32.42 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=11.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+.-+++.++.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999754
No 395
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.05 E-value=0.74 Score=37.86 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=30.2
Q ss_pred ccccccccCCCCHHHHHHHhhCC--CCCCcHHHHHhHHHHhcCCcEEEEcCCCChHHHHH
Q psy1539 11 VTVKVLSSRNRREKEDRIGESQP--FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 11 ~~~~~~~~~~l~~~l~~~l~~~g--~~~~t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~~~ 68 (175)
.+...|+++.=..+..+.+.+.- +..+..++... +.-.+.+++.+|+|+|||+..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 34556777766666555554420 11111111100 011267999999999999754
No 396
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.02 E-value=0.7 Score=34.43 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~~ 68 (175)
..|.-+.+.+|+|+|||..+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999743
No 397
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.99 E-value=0.64 Score=35.94 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhh
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLE 77 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~ 77 (175)
.|.-+.+.+|+|||||.. +-++..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTL--l~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI--LRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCchHHHH--HHHHHcCC
Confidence 578899999999999973 34444443
No 398
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.98 E-value=0.8 Score=38.19 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|..+++.+|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999643
No 399
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.97 E-value=0.71 Score=34.80 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|+|||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 400
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=80.92 E-value=0.82 Score=32.34 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+-+++.++.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 401
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.88 E-value=0.73 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3578889999999999974
No 402
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.86 E-value=0.9 Score=33.51 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..+++.+|.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999653
No 403
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=80.84 E-value=5.5 Score=34.18 Aligned_cols=68 Identities=15% Similarity=0.301 Sum_probs=50.9
Q ss_pred EEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchH---HhHHHHhc--C-CCeEEE--eecCccCCCCceEEEEe
Q psy1539 85 VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ---KDEEYLKT--H-NPQIVG--LVNYETNLSGVVVNVMD 156 (175)
Q Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~---~~~~~l~~--~-~~iiv~--l~~~~~~~~~~~~lVlD 156 (175)
.+++++++.-+.++.+.+++. +..+..++|+.+.. +..+.+++ + .+++|+ +....+++ +++++|.-
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~ 396 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFY 396 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEES
T ss_pred CEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEEC
Confidence 477799998887777766652 77899999999866 45556664 3 578888 66668888 89998886
Q ss_pred CC
Q psy1539 157 VR 158 (175)
Q Consensus 157 Ea 158 (175)
..
T Consensus 397 ~~ 398 (677)
T 3rc3_A 397 SL 398 (677)
T ss_dssp CS
T ss_pred Cc
Confidence 65
No 404
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.82 E-value=0.73 Score=34.57 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|+|||..
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 405
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=80.73 E-value=0.72 Score=34.45 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|+|||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3578889999999999964
No 406
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.69 E-value=0.86 Score=32.01 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHH
Q psy1539 53 DILCQAKSGMGKTAV 67 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~ 67 (175)
.+++.+++|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999964
No 407
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.52 E-value=0.86 Score=32.70 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.+++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999653
No 408
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=80.51 E-value=0.76 Score=34.74 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|||||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999963
No 409
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=80.38 E-value=3.9 Score=33.31 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEE--------ECCCchHHh---HHH
Q psy1539 61 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF--------FGGLPIQKD---EEY 129 (175)
Q Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~--------~g~~~~~~~---~~~ 129 (175)
.++|-.. +.-++........+.++||.++++.-+..+.+.+++.... +++++..+ +|+.+..+. .+.
T Consensus 370 ~~~K~~~-L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~ 447 (556)
T 4a2p_A 370 ENPKLEE-LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 447 (556)
T ss_dssp CCHHHHH-HHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGG-GSCCEEC------------------------
T ss_pred CChHHHH-HHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCc-ceeeeeEEEccCCcccccccCHHHHHHHHHH
Confidence 4666533 3334433322234568999999999999988877654211 13344333 344443332 334
Q ss_pred Hhc-C-CCeEEE--eecCccCCCCceEEEEeCCCCC
Q psy1539 130 LKT-H-NPQIVG--LVNYETNLSGVVVNVMDVRSGG 161 (175)
Q Consensus 130 l~~-~-~~iiv~--l~~~~~~~~~~~~lVlDEad~~ 161 (175)
+++ + ..++|+ .....+++.+++++|.=+....
T Consensus 448 F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 483 (556)
T 4a2p_A 448 FKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGN 483 (556)
T ss_dssp ------CCEEEEEC-----------CEEEEETCCSC
T ss_pred hcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCC
Confidence 444 3 477887 5555889999999988666433
No 410
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=80.38 E-value=0.78 Score=36.17 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
=.++.++||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578999999999753
No 411
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=80.30 E-value=0.95 Score=38.23 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHH
Q psy1539 53 DILCQAKSGMGKTAV 67 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~ 67 (175)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999964
No 412
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=80.28 E-value=5.2 Score=33.87 Aligned_cols=65 Identities=8% Similarity=-0.081 Sum_probs=46.0
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcC-CCeEEE--eecCccCCCCceEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH-NPQIVG--LVNYETNLSGVVVN 153 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~iiv~--l~~~~~~~~~~~~l 153 (175)
+.++||.++|++-+..+.+.+++. +.++..++|+.. .+..+.++++ ..++|+ +....++++ ++++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~R-~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTTH-HHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChHHH-HHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 347999999999999888777654 677888888643 3344455544 567787 555677775 7665
No 413
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=80.11 E-value=0.72 Score=31.92 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.4
Q ss_pred hcCCcEEEEcCCCChHHH
Q psy1539 49 VLGMDILCQAKSGMGKTA 66 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~ 66 (175)
..|.-+.+.+|.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457778999999999995
No 414
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=80.05 E-value=0.8 Score=34.52 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|+|||..
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 577889999999999974
No 415
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.04 E-value=1.2 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
++++.||+|+|||...
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3999999999999654
No 416
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.02 E-value=0.88 Score=33.92 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.-++++|++|||||...
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 456899999999999643
No 417
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=79.91 E-value=0.93 Score=36.97 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999654
No 418
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=79.88 E-value=1.6 Score=34.50 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
|.-+.+.+|+|+|||...
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 445789999999999754
No 419
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=79.80 E-value=0.93 Score=31.53 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999643
No 420
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.73 E-value=0.8 Score=34.80 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|+|||..
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 578899999999999973
No 421
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.65 E-value=1.8 Score=35.48 Aligned_cols=39 Identities=21% Similarity=0.059 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
.|.-+++.|++|+|||...+ -++...... .+..++++.-
T Consensus 241 ~G~l~li~G~pG~GKT~lal-~~a~~~a~~-~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVR-QQALQWGTA-MGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHH-HHHHHHTTT-SCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHH-HHHHHHHHh-cCCcEEEEec
Confidence 45779999999999996544 333333221 1346777764
No 422
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=79.58 E-value=9.8 Score=30.80 Aligned_cols=79 Identities=13% Similarity=-0.013 Sum_probs=49.8
Q ss_pred eEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC-CCeEEEe---ecCccCCCCceEEEE
Q psy1539 83 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-NPQIVGL---VNYETNLSGVVVNVM 155 (175)
Q Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-~~iiv~l---~~~~~~~~~~~~lVl 155 (175)
.+.++++..++-+..+.+.+.+ . +.++..++|+.+..+.. +.+.++ .+++|++ ....+++++++++|+
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~----~-~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~ 422 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKN----E-YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL 422 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT----T-CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE
T ss_pred CCeEEEEecHHHHHHHHHHHHH----c-CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE
Confidence 3555666666666554444443 2 44788899988754433 344444 4677774 334789999999999
Q ss_pred eCCCCCCHHHH
Q psy1539 156 DVRSGGWWLDL 166 (175)
Q Consensus 156 DEad~~f~~~v 166 (175)
..++.+...-+
T Consensus 423 ~~~~~s~~~~~ 433 (510)
T 2oca_A 423 AHGVKSKIIVL 433 (510)
T ss_dssp SSCCCSCCHHH
T ss_pred eCCCCCHHHHH
Confidence 99876544433
No 423
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=79.57 E-value=0.97 Score=31.59 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.8
Q ss_pred EEEEcCCCChHHHHH
Q psy1539 54 ILCQAKSGMGKTAVF 68 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~ 68 (175)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999754
No 424
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=79.42 E-value=0.94 Score=32.26 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.-+.+.+++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999643
No 425
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=79.35 E-value=1.1 Score=33.57 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|+|||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp ETTCEEEEECCSSSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578889999999999973
No 426
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=79.09 E-value=0.64 Score=34.50 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+..+++.+++|||||...
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999643
No 427
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=79.03 E-value=0.88 Score=33.50 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+-+.+|+|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 428
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=78.95 E-value=5.5 Score=32.13 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHhHHHHh---cCCcEEEEcCCCChHHHHH
Q psy1539 39 SFQHECIPQAV---LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 39 ~~Q~~~i~~~~---~g~~~ii~a~TGsGKT~~~ 68 (175)
..-..+|.... .|..+.+.+|+|+|||...
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 34445555544 5899999999999999754
No 429
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=78.61 E-value=1 Score=44.62 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=17.7
Q ss_pred HhcCCcEEEEcCCCChHHHHH
Q psy1539 48 AVLGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~ 68 (175)
+..+++++++||||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 346899999999999999643
No 430
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=78.61 E-value=9.5 Score=33.92 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEE--------EEECCCchHHhH---HH
Q psy1539 61 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG--------VFFGGLPIQKDE---EY 129 (175)
Q Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~--------~~~g~~~~~~~~---~~ 129 (175)
.++|... +.-++........+.++||.++++..+..+.+.+++.... +++++. ..+|+.+..++. +.
T Consensus 611 ~~~K~~~-L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l-~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~ 688 (936)
T 4a2w_A 611 ENPKLEE-LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688 (936)
T ss_dssp CCHHHHH-HHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTT-SSCCCEEC-----------------------
T ss_pred CCHHHHH-HHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccc-cccceeEEecCCCcccCCCCCHHHHHHHHHH
Confidence 3666533 3444443332345679999999999999988888764211 133333 334555443333 34
Q ss_pred Hhc-C-CCeEEE--eecCccCCCCceEEEEeCCCCC
Q psy1539 130 LKT-H-NPQIVG--LVNYETNLSGVVVNVMDVRSGG 161 (175)
Q Consensus 130 l~~-~-~~iiv~--l~~~~~~~~~~~~lVlDEad~~ 161 (175)
+++ | .+++|+ .....+++.+++++|.=+....
T Consensus 689 Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s 724 (936)
T 4a2w_A 689 FKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGN 724 (936)
T ss_dssp -----CCSEEEEECC------CCCCSEEEEESCCSC
T ss_pred hhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCC
Confidence 444 3 477887 5556889999999998766433
No 431
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.41 E-value=1.5 Score=37.90 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHhh
Q psy1539 51 GMDILCQAKSGMGKTAVFVLATLQQL 76 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~~~~~l~~l 76 (175)
..++++.+|+|+|||... -.+...+
T Consensus 201 ~~~vLL~G~pGtGKT~la-~~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA-EGLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 479999999999999654 3344444
No 432
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=78.23 E-value=1.1 Score=31.57 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
..+.+.+++|||||...
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999754
No 433
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=78.19 E-value=1.1 Score=32.12 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-.++.+|+|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4578899999999653
No 434
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.99 E-value=22 Score=28.62 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=13.5
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+-+.+.+++|+|||...
T Consensus 99 ~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34778899999999654
No 435
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.82 E-value=1.9 Score=34.51 Aligned_cols=26 Identities=8% Similarity=-0.028 Sum_probs=20.5
Q ss_pred cccccccccCCCCHHHHHHHhhCCCC
Q psy1539 10 GVTVKVLSSRNRREKEDRIGESQPFR 35 (175)
Q Consensus 10 ~~~~~~~~~~~l~~~l~~~l~~~g~~ 35 (175)
..+...+...|+++..++.|++.||.
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 34566677788999999999888886
No 436
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=77.77 E-value=0.99 Score=34.52 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|+|||..
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467889999999999974
No 437
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=77.73 E-value=20 Score=26.79 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=57.6
Q ss_pred CCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhH---HHHhcC--
Q psy1539 59 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTH-- 133 (175)
Q Consensus 59 ~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~---~~l~~~-- 133 (175)
...+||.. .+.-++..+.. .+.++||.+.++..+..+.+.+.+.. ++.+..++|+.+..+.. +.+.++
T Consensus 92 ~~~s~K~~-~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 164 (271)
T 1z5z_A 92 VRRSGKMI-RTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPS 164 (271)
T ss_dssp STTCHHHH-HHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTT
T ss_pred cccCHHHH-HHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCC
Confidence 34577753 34444544432 34589999999998888777776532 56677889998754433 345554
Q ss_pred CCeEE-E--eecCccCCCCceEEEEeCC
Q psy1539 134 NPQIV-G--LVNYETNLSGVVVNVMDVR 158 (175)
Q Consensus 134 ~~iiv-~--l~~~~~~~~~~~~lVlDEa 158 (175)
+++++ + .....+++.....+|+=+.
T Consensus 165 ~~v~L~st~~~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 165 VKFIVLSVKAGGFGINLTSANRVIHFDR 192 (271)
T ss_dssp CCEEEEECCTTCCCCCCTTCSEEEECSC
T ss_pred CCEEEEehhhhcCCcCcccCCEEEEECC
Confidence 34333 3 2223677777777776555
No 438
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=77.57 E-value=1.2 Score=32.00 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.-+.+.++.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 439
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=77.53 E-value=0.92 Score=31.83 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=12.9
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999643
No 440
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=77.38 E-value=1.2 Score=32.21 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999743
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=77.33 E-value=1.1 Score=32.39 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
.+++.+|+||||+.-.
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999998643
No 442
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.24 E-value=2.3 Score=33.32 Aligned_cols=19 Identities=21% Similarity=0.036 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~ 70 (175)
.-+.+.+|+|+|||.....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5688999999999965443
No 443
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=77.19 E-value=1.1 Score=36.98 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+.+++.+|+|+|||+..
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999654
No 444
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.01 E-value=2.2 Score=35.39 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
|.-+.+.+++|+|||...
T Consensus 293 GeVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTI 310 (503)
T ss_dssp TEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCcccHHHHH
Confidence 345789999999999753
No 445
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=76.78 E-value=2.8 Score=34.00 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=44.1
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
+.++||.+|++.-+..+.+.+++. ++.+..++|+.. .+..+.++++ ..++|+ +....+++++ +++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTDISEMGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESSCC---CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHH-HHHHhhccCCCceEEEECChHHhCeecCC-CEEE
Confidence 347999999999998888777654 677888888643 2333444444 467777 5566788888 6555
No 446
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=76.75 E-value=1.2 Score=33.93 Aligned_cols=17 Identities=24% Similarity=0.299 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.-+.|.+++|||||...
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999653
No 447
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=76.62 E-value=1.8 Score=33.51 Aligned_cols=17 Identities=29% Similarity=0.469 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+.+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999654
No 448
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.61 E-value=2.6 Score=34.80 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEec
Q psy1539 48 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90 (175)
Q Consensus 48 ~~~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (175)
+..|.-+.+.+++|+||| .++..++...... +.+++++++
T Consensus 278 i~~G~i~~i~G~~GsGKS-TLl~~l~g~~~~~--G~~vi~~~~ 317 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKT-LLVSRFVENACAN--KERAILFAY 317 (525)
T ss_dssp EESSCEEEEEECTTSSHH-HHHHHHHHHHHTT--TCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHH-HHHHHHHHHHHhC--CCCEEEEEE
No 449
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=76.59 E-value=10 Score=32.29 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=51.0
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhh--CC-----------------------------CeEEEEEECCCchHHhHHH
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKY--MS-----------------------------NIKVGVFFGGLPIQKDEEY 129 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~-----------------------------~i~v~~~~g~~~~~~~~~~ 129 (175)
.+.++||.+|++.-+..+.+.+.+.... .+ ...+..++|+.+..++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3458999999999999988887764221 00 1237788999886554433
Q ss_pred ---HhcC-CCeEEE--eecCccCCCCceEEEE
Q psy1539 130 ---LKTH-NPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 130 ---l~~~-~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
+.+| ..++|+ +....+++++++++|-
T Consensus 331 ~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPTLAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHHTTCSCEEEECGGGGGSSCCCBSEEEEC
T ss_pred HHHHHcCCCeEEEEChHHhcccCCCceEEEEe
Confidence 3333 467777 5556888999988764
No 450
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=76.55 E-value=1.1 Score=39.30 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.++.+++.+|+|+|||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999643
No 451
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=76.51 E-value=0.69 Score=38.03 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchH---HhHHHHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ---KDEEYLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~---~~~~~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.++++.-+..+.+.+.+ . +..+..++|+.+.. ...+.++++ .+++|+ +....+++.+++++|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~----~-~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTA----D-GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTT----T-TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----C-CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE
Confidence 345899999999999887766654 2 66778888876532 334455554 467777 566688888888888
Q ss_pred EeC
Q psy1539 155 MDV 157 (175)
Q Consensus 155 lDE 157 (175)
...
T Consensus 431 ~~~ 433 (508)
T 3fho_A 431 NYD 433 (508)
T ss_dssp C--
T ss_pred EEC
Confidence 543
No 452
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=76.42 E-value=1.4 Score=33.19 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
|.-+.+.+|+|+|||..+
T Consensus 30 Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp SSEEEEECCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 778899999999999743
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.32 E-value=1.3 Score=33.43 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+++.+++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 454
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=76.17 E-value=1.2 Score=32.34 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.++.|||||..
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 456789999999999973
No 455
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=76.15 E-value=15 Score=28.22 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=52.1
Q ss_pred cEEEEc---CCCChHHHHHHHHHHHhhhcC----------CCCeEEEEEecCHH---HHHHHHHHHHHHHhhCCCeEEEE
Q psy1539 53 DILCQA---KSGMGKTAVFVLATLQQLETT----------DSNVYVLVMCHTRE---LAFQISKEYERFSKYMSNIKVGV 116 (175)
Q Consensus 53 ~~ii~a---~TGsGKT~~~~~~~l~~l~~~----------~~~~~~lil~Pt~~---L~~q~~~~~~~~~~~~~~i~v~~ 116 (175)
-+++.+ --|+|||=. .+.+.+.+... .+....+++.+... -+.++.++-..+.+..++..+.+
T Consensus 37 PVI~VGNitvGGTGKTP~-vi~L~~~L~~~~~~ilsRGYg~~~~~~~~v~~~~~~~~~~~~~GDEp~lla~~~~~~~v~v 115 (315)
T 4ehx_A 37 PVISVGNLSVGGSGKTSF-VMYLADLLKDKRVCILSRGYKRKSKGTLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVA 115 (315)
T ss_dssp CEEEEEESBSSCCSHHHH-HHHHHHHTTTSCEEEEECCCSCSSCSEEEEEETTEECSCHHHHCHHHHHHHHHCTTSEEEE
T ss_pred CEEEECCEEeCCCChHHH-HHHHHHHHhhcCceEEeecccccccCceEEeecccccCCcccccCHHHHHHHhCCCceEEE
Confidence 345554 568999942 34444444321 01111233333221 35666777666666655555443
Q ss_pred EECCCchHHhHHHH-hcCCCeEEE--eecCccCCCCceEEEEeC
Q psy1539 117 FFGGLPIQKDEEYL-KTHNPQIVG--LVNYETNLSGVVVNVMDV 157 (175)
Q Consensus 117 ~~g~~~~~~~~~~l-~~~~~iiv~--l~~~~~~~~~~~~lVlDE 157 (175)
+..........+ ..++++||. =.++...-.++..+++|.
T Consensus 116 --~~~R~~~~~~~~~~~~~dviIlDDGfQh~~l~rDl~Ivv~d~ 157 (315)
T 4ehx_A 116 --SEDRYKGGLLALEKLSPEVFILDDGFQHRKLHRDLNILLLKK 157 (315)
T ss_dssp --ESSHHHHHHHHHHHHCCSEEEEETCTTCTTBCCSEEEEEEEH
T ss_pred --ecchHHHHHHHhhccCCcEEEecCccccccccccceEEEeee
Confidence 333322222222 246788886 333333447888999883
No 456
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=76.01 E-value=1.3 Score=34.39 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHHH
Q psy1539 54 ILCQAKSGMGKTAVFV 69 (175)
Q Consensus 54 ~ii~a~TGsGKT~~~~ 69 (175)
.++.+|+|+|||..+-
T Consensus 26 ~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4689999999997643
No 457
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=75.57 E-value=2.4 Score=35.48 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|+-+.+.+|+|||||..
T Consensus 368 ~G~~~~ivG~sGsGKSTl 385 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTI 385 (582)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999963
No 458
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=75.44 E-value=1.5 Score=31.28 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
..+.+.++.|||||.+.
T Consensus 13 ~iIgltG~~GSGKSTva 29 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 459
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=75.38 E-value=15 Score=32.40 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=46.7
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHHHHh-c--CCCeEEE--eecCccCCC--------
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK-T--HNPQIVG--LVNYETNLS-------- 148 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~~l~-~--~~~iiv~--l~~~~~~~~-------- 148 (175)
+..+||.|.|++-+..+.+.+++ . ++.+..++|+....+. .... . ...++|+ +..+..++.
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~----~-gi~~~vLhg~~~~rEr-~ii~~ag~~g~VlIATdmAgRG~DI~l~~~V~~~ 505 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKN----K-GIPHQVLNAKNHEREA-QIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKEL 505 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHT----T-TCCCEEECSSCHHHHH-HHHTTTTSTTCEEEEETTSSTTCCCCCCTTSGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----C-CCCEEEeeCCccHHHH-HHHHHcCCCCeEEEeCCccccCcCccccchhhhc
Confidence 33599999999999887666553 3 7888899998753332 2222 2 2467887 444566665
Q ss_pred CceEEEEeCCC
Q psy1539 149 GVVVNVMDVRS 159 (175)
Q Consensus 149 ~~~~lVlDEad 159 (175)
+..+||-=|..
T Consensus 506 ggl~VIn~d~p 516 (844)
T 1tf5_A 506 GGLAVVGTERH 516 (844)
T ss_dssp TSEEEEESSCC
T ss_pred CCcEEEEecCC
Confidence 55666665553
No 460
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=75.29 E-value=3 Score=34.89 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHhhCCCCCC----cHHHHHhHH-----HHhcCCcEEEEcCCCChHHHH
Q psy1539 19 RNRREKEDRIGESQPFREQ----TSFQHECIP-----QAVLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 19 ~~l~~~l~~~l~~~g~~~~----t~~Q~~~i~-----~~~~g~~~ii~a~TGsGKT~~ 67 (175)
.+++..-++.+-..|-..| ++.-...+. .+..|..+++.+++|||||..
T Consensus 328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTL 385 (552)
T 3cr8_A 328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTL 385 (552)
T ss_dssp ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHH
Confidence 4666665665555554332 122222222 344688999999999999964
No 461
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=75.06 E-value=1.5 Score=32.47 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.4
Q ss_pred CcEEEEcCCCChHHHH
Q psy1539 52 MDILCQAKSGMGKTAV 67 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~ 67 (175)
.-+.+.+|+|+|||..
T Consensus 25 e~~~liG~nGsGKSTL 40 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4577999999999974
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=74.92 E-value=1.8 Score=31.58 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.+..+.+.++.|||||...
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999754
No 463
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=74.75 E-value=1.5 Score=31.19 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|+.+++.+++|+|||...
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 5788999999999999544
No 464
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=74.70 E-value=2.1 Score=36.92 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=19.6
Q ss_pred hHHHHhcCCc--EEEEcCCCChHHHHH
Q psy1539 44 CIPQAVLGMD--ILCQAKSGMGKTAVF 68 (175)
Q Consensus 44 ~i~~~~~g~~--~ii~a~TGsGKT~~~ 68 (175)
.+..+++|.| ++..+.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 4667788876 566789999999764
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=74.63 E-value=1.7 Score=34.55 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|+.+.+.+|+|+|||..
T Consensus 168 ~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp TCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999964
No 466
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=74.47 E-value=1.4 Score=32.30 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
..+-+++.+|+||||+.-.
T Consensus 28 k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp SCEEEEEECCTTCCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456788999999998643
No 467
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=74.42 E-value=1.6 Score=37.71 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+.++++.+|+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 578999999999999653
No 468
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.38 E-value=2.5 Score=36.55 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
++++.+|||+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999654
No 469
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=74.33 E-value=6.9 Score=30.28 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHhhCCCCC-----CcHHHHHhH-HHHhc----------------CCcEEEEcCCCChHHHH
Q psy1539 19 RNRREKEDRIGESQPFRE-----QTSFQHECI-PQAVL----------------GMDILCQAKSGMGKTAV 67 (175)
Q Consensus 19 ~~l~~~l~~~l~~~g~~~-----~t~~Q~~~i-~~~~~----------------g~~~ii~a~TGsGKT~~ 67 (175)
...++++++..++.|..- .|.--...+ ..+.. |+.+++.+++|+|||..
T Consensus 90 ~~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~ 160 (314)
T 1ko7_A 90 LEPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSET 160 (314)
T ss_dssp CCCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHH
T ss_pred CCCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHH
Confidence 345788999988888652 222211222 22332 78999999999999744
No 470
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=74.22 E-value=1.7 Score=30.62 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+.+.++.|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 471
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.18 E-value=1.6 Score=32.15 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
-+.+.++.|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999754
No 472
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=74.16 E-value=0.65 Score=36.15 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeEEEEEECCCchHHhHH---HHhcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 81 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YLKTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~v~~~~g~~~~~~~~~---~l~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
.+.++||.+++++-+..+.+.+++. +..+..++|+.+..+..+ .++++ ..++|+ .....+++++++++|
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE
Confidence 3457999999999988877766543 667788888866443332 33333 356666 444466777777776
Q ss_pred EeC
Q psy1539 155 MDV 157 (175)
Q Consensus 155 lDE 157 (175)
.-+
T Consensus 333 ~~~ 335 (394)
T 1fuu_A 333 NYD 335 (394)
T ss_dssp ---
T ss_pred EeC
Confidence 543
No 473
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=74.11 E-value=0.76 Score=32.68 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=12.3
Q ss_pred EEEEcCCCChHHHH
Q psy1539 54 ILCQAKSGMGKTAV 67 (175)
Q Consensus 54 ~ii~a~TGsGKT~~ 67 (175)
+++.|++|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999964
No 474
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=73.94 E-value=1.4 Score=34.82 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|+|||..
T Consensus 29 ~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTL 46 (359)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 578889999999999963
No 475
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=73.83 E-value=1.5 Score=32.99 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=12.7
Q ss_pred cEEEEcCCCChHHHH
Q psy1539 53 DILCQAKSGMGKTAV 67 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~ 67 (175)
++.+.||+|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999953
No 476
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.43 E-value=1.9 Score=32.53 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.++++.||+|+|||...
T Consensus 43 ~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 35999999999999643
No 477
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=73.42 E-value=1.5 Score=33.56 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.|.-+.+.+|+|||||...
T Consensus 79 ~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCEEEEEEECTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3456789999999999743
No 478
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=73.38 E-value=7 Score=33.92 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHHHHHHHHHhhCCCeE--------EEEEECCCchHHh---HHH
Q psy1539 61 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK--------VGVFFGGLPIQKD---EEY 129 (175)
Q Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~i~--------v~~~~g~~~~~~~---~~~ 129 (175)
.++|-.. +.-++........+.++||.++++..+..+.+.++..... ++++ ....+|+.+..+. .+.
T Consensus 611 ~~~K~~~-L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~-~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~ 688 (797)
T 4a2q_A 611 ENPKLEE-LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688 (797)
T ss_dssp CCHHHHH-HHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTT-CSCCCEEC-----------------------
T ss_pred CChHHHH-HHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCccc-ccccceEEEecCCcccCCCCCHHHHHHHHHH
Confidence 4667543 3334433222234568999999999999988888753211 1233 3333455543333 334
Q ss_pred Hhc-C-CCeEEE--eecCccCCCCceEEEEeCCC
Q psy1539 130 LKT-H-NPQIVG--LVNYETNLSGVVVNVMDVRS 159 (175)
Q Consensus 130 l~~-~-~~iiv~--l~~~~~~~~~~~~lVlDEad 159 (175)
+++ + .+++|+ .....+++.+++++|.=+..
T Consensus 689 F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p 722 (797)
T 4a2q_A 689 FKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (797)
T ss_dssp -----CCSEEEEECC-------CCCSEEEEESCC
T ss_pred hhccCCceEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 454 3 477887 55558899999999876653
No 479
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=73.30 E-value=1.4 Score=32.26 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+++.++.|||||..
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 567899999999999964
No 480
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=72.97 E-value=1.5 Score=35.01 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|+|||..
T Consensus 45 ~~Ge~~~llGpsGsGKSTL 63 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTL 63 (390)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCChHHHH
Confidence 3578899999999999974
No 481
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=72.95 E-value=2.8 Score=36.20 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHH
Q psy1539 53 DILCQAKSGMGKTAVF 68 (175)
Q Consensus 53 ~~ii~a~TGsGKT~~~ 68 (175)
++++.+|+|+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999754
No 482
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=72.87 E-value=1.7 Score=32.84 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
.-+.+.|+.|||||...
T Consensus 76 ~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35899999999999754
No 483
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.47 E-value=1.7 Score=38.08 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q psy1539 52 MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~ 68 (175)
+.+++.+|+|+|||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999743
No 484
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=72.30 E-value=2.1 Score=33.76 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|+|||..
T Consensus 39 ~~Ge~~~llGpnGsGKSTL 57 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTI 57 (355)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCcHHHH
Confidence 3578899999999999974
No 485
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=72.19 E-value=13 Score=31.71 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=49.6
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhC-------------CC---------------eEEEEEECCCchHHhHH---HH
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYM-------------SN---------------IKVGVFFGGLPIQKDEE---YL 130 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-------------~~---------------i~v~~~~g~~~~~~~~~---~l 130 (175)
+.++||.+|++.-+..+.+.+.+..... .+ ..+...+|+.+..++.. .+
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 3589999999999999888887643210 01 13788899987655443 33
Q ss_pred hcC-CCeEEE--eecCccCCCCceEEE
Q psy1539 131 KTH-NPQIVG--LVNYETNLSGVVVNV 154 (175)
Q Consensus 131 ~~~-~~iiv~--l~~~~~~~~~~~~lV 154 (175)
++| ..++|+ +....++++.++++|
T Consensus 317 ~~g~~~vlvaT~~l~~Gvdip~~~~VI 343 (720)
T 2zj8_A 317 RKGIIKAVVATPTLSAGINTPAFRVII 343 (720)
T ss_dssp HTTSSCEEEECSTTGGGCCCCBSEEEE
T ss_pred HCCCCeEEEECcHhhccCCCCceEEEE
Confidence 444 467777 455578888888755
No 486
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=72.08 E-value=2.3 Score=30.29 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
+..+.+.+++|||||...
T Consensus 3 ~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 487
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=72.08 E-value=2.5 Score=33.06 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVL 70 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~ 70 (175)
.|..+++.+|+|+|||.....
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456689999999999965443
No 488
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=71.98 E-value=2.2 Score=33.74 Aligned_cols=18 Identities=33% Similarity=0.290 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|+|||..
T Consensus 28 ~Ge~~~llGpnGsGKSTL 45 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTT 45 (359)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCchHHHH
Confidence 577889999999999974
No 489
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=71.93 E-value=1.9 Score=37.87 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHhHHHHhcC--------CcEEEEcCCCChHHHHH
Q psy1539 42 HECIPQAVLG--------MDILCQAKSGMGKTAVF 68 (175)
Q Consensus 42 ~~~i~~~~~g--------~~~ii~a~TGsGKT~~~ 68 (175)
..++.....| ..+++.+|||+|||...
T Consensus 571 ~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 571 ADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp HHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred HHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
No 490
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=71.75 E-value=2 Score=33.78 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|.-+.+.+|+|+|||..
T Consensus 24 ~~Ge~~~llGpnGsGKSTL 42 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLF 42 (348)
T ss_dssp CTTCEEEEECCCTHHHHHH
T ss_pred cCCCEEEEECCCCccHHHH
Confidence 3578889999999999974
No 491
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=71.65 E-value=1.8 Score=30.45 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCChHHHH
Q psy1539 49 VLGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 49 ~~g~~~ii~a~TGsGKT~~ 67 (175)
..|..+.+.+++|+|||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp SCSEEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3567899999999999953
No 492
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.58 E-value=1.8 Score=43.60 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=17.1
Q ss_pred HHhcCCcEEEEcCCCChHHH
Q psy1539 47 QAVLGMDILCQAKSGMGKTA 66 (175)
Q Consensus 47 ~~~~g~~~ii~a~TGsGKT~ 66 (175)
.+..|+.++++||||+|||.
T Consensus 1300 ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1300 WLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHHTTCCCEEESSTTSSHHH
T ss_pred HHHCCCcEEEECCCCCCHHH
Confidence 34468999999999999995
No 493
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=71.50 E-value=23 Score=28.51 Aligned_cols=42 Identities=26% Similarity=0.179 Sum_probs=23.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEe--cCHHHH
Q psy1539 52 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELA 95 (175)
Q Consensus 52 ~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~ 95 (175)
+.+++.+++|+|||....- +...+.. ..+.+++++. |.+..+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~-LA~~l~~-~~G~kVllvd~D~~r~~a 144 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGK-LGKFLRE-KHKKKVLVVSADVYRPAA 144 (433)
T ss_dssp EEEEEECSTTSSHHHHHHH-HHHHHHH-TSCCCEEEEECCCSSTTH
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHH-hcCCeEEEEecCCCCccH
Confidence 3577889999999975432 2223322 1144666665 444433
No 494
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=71.49 E-value=0.88 Score=39.86 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~ 68 (175)
.++.+++.+|+|+|||...
T Consensus 510 ~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHH
T ss_pred CCceeEEECCCCCCHHHHH
Confidence 4678999999999999743
No 495
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=71.48 E-value=1.8 Score=34.53 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|+|||..
T Consensus 28 ~Ge~~~llGpsGsGKSTL 45 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTL 45 (381)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCchHHHH
Confidence 578889999999999973
No 496
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=71.48 E-value=5.6 Score=31.37 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=26.1
Q ss_pred HHHHhhCCCCCC-----cHHHHHhHHHHhcCCcEEEEcCCCChHHH
Q psy1539 26 DRIGESQPFREQ-----TSFQHECIPQAVLGMDILCQAKSGMGKTA 66 (175)
Q Consensus 26 ~~~l~~~g~~~~-----t~~Q~~~i~~~~~g~~~ii~a~TGsGKT~ 66 (175)
++.+.+.||... +..-...+.....|.-+.+.+|+|+|||.
T Consensus 185 ~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKST 230 (358)
T 2rcn_A 185 MDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSS 230 (358)
T ss_dssp HHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTSSHHH
T ss_pred HHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCccHHH
Confidence 344556677521 11112334445688999999999999995
No 497
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=71.44 E-value=2.1 Score=31.68 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy1539 51 GMDILCQAKSGMGKTAVF 68 (175)
Q Consensus 51 g~~~ii~a~TGsGKT~~~ 68 (175)
...+.+.+|+|||||...
T Consensus 9 ~~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999654
No 498
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=71.23 E-value=2.3 Score=33.65 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAV 67 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~ 67 (175)
.|.-+.+.+|+|+|||..
T Consensus 28 ~Ge~~~llGpnGsGKSTL 45 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTL 45 (362)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 577889999999999974
No 499
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=71.19 E-value=8.4 Score=32.83 Aligned_cols=74 Identities=19% Similarity=0.088 Sum_probs=49.5
Q ss_pred CeEEEEEecCHHHHHHHHHHHHHHHhhC-C------------------------CeEEEEEECCCchHHhHHH---HhcC
Q psy1539 82 NVYVLVMCHTRELAFQISKEYERFSKYM-S------------------------NIKVGVFFGGLPIQKDEEY---LKTH 133 (175)
Q Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~------------------------~i~v~~~~g~~~~~~~~~~---l~~~ 133 (175)
+.++||.+|++.-+..+.+.+......+ + +..+..++|+.+..++... +.+|
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 4479999999999999888877643210 0 1236678999886544432 3344
Q ss_pred -CCeEEE--eecCccCCCCceEEEE
Q psy1539 134 -NPQIVG--LVNYETNLSGVVVNVM 155 (175)
Q Consensus 134 -~~iiv~--l~~~~~~~~~~~~lVl 155 (175)
..++|+ +....++++.++++|-
T Consensus 322 ~~~vlvaT~~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATPTLAAGVNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECSTTTSSSCCCBSEEEEC
T ss_pred CCeEEEECcHHhccCCCCceEEEEc
Confidence 467777 5555888888887654
No 500
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=70.66 E-value=4.8 Score=38.96 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=29.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHhhhcCCCCeEEEEEecCHHHHHHHH
Q psy1539 50 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 99 (175)
Q Consensus 50 ~g~~~ii~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (175)
.|+++++.+|+|+|||.....-+.+.+. .+-+++++. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k---~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE-ccccHHHHH
Confidence 5689999999999999766554544443 244677765 333334433
Done!