RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1539
(175 letters)
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 60.3 bits (145), Expect = 4e-12
Identities = 14/138 (10%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
E + Q + + A +G+GKT+ + +L V+ T
Sbjct: 41 VGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSL 97
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVGLVNYETNLSGVVVN 153
L Q ++ ++++ + G + + + + T + +
Sbjct: 98 LVIQAAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKH 156
Query: 154 VMDVRSGGWWLDLEALIL 171
+ + +
Sbjct: 157 YR------ELGHFDFIFV 168
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 55.7 bits (133), Expect = 1e-10
Identities = 81/105 (77%), Positives = 87/105 (82%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + QHECIPQA+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRE
Sbjct: 21 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 80
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
LAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IV
Sbjct: 81 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 125
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 49.1 bits (116), Expect = 4e-08
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 110
+ G GKT ++ A +++ + L++ TR +A ++ +
Sbjct: 9 KRLTIMDLHPGAGKTKRYLPAIVREA--IKRGLRTLILAPTRVVAAEMEEALRGLPIRYQ 66
Query: 111 NIKV 114
+
Sbjct: 67 TPAI 70
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 45.0 bits (105), Expect = 8e-07
Identities = 34/106 (32%), Positives = 58/106 (54%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
+ + + Q E IP A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRE
Sbjct: 23 WEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
LA Q+S+ + SK+M KV GG ++ D L ++
Sbjct: 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 128
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 44.2 bits (103), Expect = 1e-06
Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 30 ESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 89
+ + E Q E + + G ++L + GKT + +A +++ ++Y +
Sbjct: 19 KEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLY---VV 75
Query: 90 HTRELAFQISKEYERFSKYMSNIKV 114
R LA + + ++++ K I +
Sbjct: 76 PLRALAGEKYESFKKWEKIGLRIGI 100
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 40.7 bits (94), Expect = 3e-05
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN---------VY 84
++ T Q IP + DI+ A++G GKTA F++ + L D N
Sbjct: 41 YQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPK 100
Query: 85 VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVG 139
L++ TRELA QI E ++FS ++ V +GG ++ +V
Sbjct: 101 CLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVA 154
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 38.1 bits (87), Expect = 2e-04
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 10/104 (9%)
Query: 16 LSSRNRREKEDRIGESQPFREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 75
L S ++ ++ G Q Q E I + G D L +G GK+ + + L
Sbjct: 9 LESGAKQVLQETFGYQQF----RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL 64
Query: 76 LETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 119
T +V+ L + + + +
Sbjct: 65 NGLT------VVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE 102
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 36.7 bits (83), Expect = 5e-04
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 36 EQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90
+ +Q + + L +G+GKT + ++ +L V +L
Sbjct: 9 QPRIYQEVIYAKC-KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTK 62
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 32.6 bits (73), Expect = 0.015
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 34 FREQTSFQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 93
F + + Q E IP A+ G DIL +AK+G GKTA FV+ + N ++
Sbjct: 21 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP-TLEKVKPKLNKIQALIMVPTR 79
Query: 94 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 138
+ + R I V GG ++ D L +V
Sbjct: 80 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILV 124
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 26.6 bits (57), Expect = 1.1
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 51 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 90
GM + G GKT F+ L + VL
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTR 46
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 25.1 bits (54), Expect = 5.4
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 46 PQAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 105
Q +LG +G GKT F ++ + N LV+ H + LA Q+ E + F
Sbjct: 33 HQTLLGA-------TGTGKT--FTISNVIA----QVNKPTLVIAHNKTLAGQLYSELKEF 79
>d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium
[TaxId: 90371]}
Length = 172
Score = 24.5 bits (53), Expect = 6.7
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 92 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 126
EL QI++ Y+ M + VG+ G D
Sbjct: 17 AELGRQITERYKDSGSEM--VLVGLLRGSFMFMAD 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.399
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 634,372
Number of extensions: 26696
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 15
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)