BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15390
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPI--SINKRKKVHM 63
+VPP++ +ST ++ A + ++TL C A+GFP P + W + D +PI N+ K
Sbjct: 9 NVPPSVRARQSTMNATANLSQ-SVTLACDADGFPEPTMTWTK-DGEPIEQEDNEEKYSFN 66
Query: 64 HYGEQLNITKISRTEMGAYLCIA 86
+ G +L I K+ +++ Y+CIA
Sbjct: 67 YDGSELIIKKVDKSDEAEYICIA 89
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 9 PNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ 68
P+ + + T SS V ++ L C A G P P+I W ++ + K ++ +
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG---DLPSDKAKFENFNKA 276
Query: 69 LNITKISRTEMGAYLCIAT-KIGPLK--IFWEIIFHMHYGEQLNITKISRTEMGAYLCIA 125
L IT +S + G Y C+A+ K+G ++ I + ++ ++ ++ E G +C A
Sbjct: 277 LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA 336
Query: 126 TNNVPPSV 133
N P+V
Sbjct: 337 NGNPKPTV 344
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
PP I + V R+ NI + C+A+G PAP W R +++ +I K +V M
Sbjct: 16 PPTITKQSAKDHIVDPRD--NILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMR 69
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 21 VAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEM 79
V V+E +TL C G P+P I W +PI+ +KR V + L + + +M
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR--VSQGHNGDLYFSNVMLQDM 183
Query: 80 GA-YLCIA 86
Y C A
Sbjct: 184 QTDYSCNA 191
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISI---NKRKKVH 62
+VPP + +S ++ A + ++TL C A+GFP P + W + D +PI + K +
Sbjct: 192 NVPPTVQARQSIVNATANLGQ-SVTLVCDADGFPEPTMSWTK-DGEPIENEEEDDEKHIF 249
Query: 63 MHYGEQLNITKISRTEMGAYLCIA 86
+L I + + + Y+CIA
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIA 273
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P +V + + L C A G P P I WRR D +PI+ R+ H G L I +
Sbjct: 211 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR--HKSNG-ILEIPNFQQE 267
Query: 78 EMGAYLCIA 86
+ G+Y C+A
Sbjct: 268 DAGSYECVA 276
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 19 SSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTE 78
+ + V E ++ CKA G P P +W + + ++ R ++ + G LNIT ++ ++
Sbjct: 302 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT---RDRIQIEQG-TLNITIVNLSD 357
Query: 79 MGAYLCIA 86
G Y C+A
Sbjct: 358 AGMYQCVA 365
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 25 EEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLC 84
EE + L+C+ +G P P I+W+ + + I + + G L + G Y C
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 79
Query: 85 IAT 87
IAT
Sbjct: 80 IAT 82
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 108 LNITKISRTEMGAYLCIATNNV 129
L I K+ ++++G Y C+ TN V
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTV 179
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAP---EIKWRREDNQ-PISINKRKKVHMHYGEQLNIT 72
T S+V+VR + L C P P E+ + N+ P + R+ V G L I
Sbjct: 107 TRSTVSVRRGQGMVLLCG----PPPHSGELSYAWIFNEYPSYQDNRRFVSQETG-NLYIA 161
Query: 73 KISRTEMGAYLCIAT 87
K+ ++++G Y C+ T
Sbjct: 162 KVEKSDVGNYTCVVT 176
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P +V + + L C A G P P I WRR D +PI+ R+ H G L I +
Sbjct: 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR--HKSNG-ILEIPNFQQE 268
Query: 78 EMGAYLCIA 86
+ G+Y C+A
Sbjct: 269 DAGSYECVA 277
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 19 SSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTE 78
+ + V E ++ CKA G P P +W + + ++ R ++ + G LNIT ++ ++
Sbjct: 303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT---RDRIQIEQG-TLNITIVNLSD 358
Query: 79 MGAYLCIA 86
G Y C+A
Sbjct: 359 AGMYQCVA 366
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 25 EEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLC 84
EE + L+C+ +G P P I+W+ + + I + + G L + G Y C
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 80
Query: 85 IAT 87
IAT
Sbjct: 81 IAT 83
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 108 LNITKISRTEMGAYLCIATNNV 129
L I K+ ++++G Y C+ TN V
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTV 180
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAP---EIKWRREDNQ-PISINKRKKVHMHYGEQLNIT 72
T S+V+VR + L C P P E+ + N+ P + R+ V G L I
Sbjct: 108 TRSTVSVRRGQGMVLLCG----PPPHSGELSYAWIFNEYPSYQDNRRFVSQETG-NLYIA 162
Query: 73 KISRTEMGAYLCIAT 87
K+ ++++G Y C+ T
Sbjct: 163 KVEKSDVGNYTCVVT 177
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQL-----NIT 72
P+ + V++ TL CK EG P P I+W + D +P+S N++K + + + +
Sbjct: 16 PTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 73 KISRTEMGAYLCIA 86
+ G Y C+A
Sbjct: 75 GKKEQDGGEYWCVA 88
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 13 DTESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRRE-----DNQPISINKRKKVHMHYG 66
D P V + L C +G P P + W ++ D + +S +V + G
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG 169
Query: 67 EQLNITKISRTEMGAYLCIATKI 89
L I+ + + G Y CIA +
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNL 192
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQL-----NIT 72
P+ + V++ TL CK EG P P I+W + D +P+S N++K + + + +
Sbjct: 16 PTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 73 KISRTEMGAYLCIA 86
+ G Y C+A
Sbjct: 75 GKKEQDGGEYWCVA 88
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 13 DTESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRRE-----DNQPISINKRKKVHMHYG 66
D P V + L C +G P P + W ++ D + +S +V + G
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG 169
Query: 67 EQLNITKISRTEMGAYLCIATKI 89
L I+ + + G Y CIA +
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNL 192
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 11 ILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLN 70
I DTE+ S ++ +C A G P P ++W R D QP++ R +V G +L
Sbjct: 301 ITDTEADIGS-------DLRWSCVASGKPRPAVRWLR-DGQPLASQNRIEVS---GGELR 349
Query: 71 ITKISRTEMGAYLCIA 86
+K+ + G Y C+A
Sbjct: 350 FSKLVLEDSGMYQCVA 365
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88
+TL C A G P P+IKWR+ D S + +H I + + G Y C A
Sbjct: 225 VTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLH------IQNVDFEDEGTYECEAEN 278
Query: 89 IGPLKIF-WEIIFHMHYGEQLNITKISRTEMGAYL---CIATNNVPPSV 133
I + II H + L++ + ++G+ L C+A+ P+V
Sbjct: 279 IKGRDTYQGRIIIHAQ-PDWLDVITDTEADIGSDLRWSCVASGKPRPAV 326
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCI 85
E +TLTC+A P +W+ + + + + + G+ + + + G+Y C+
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTE-LKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCV 80
Query: 86 AT 87
AT
Sbjct: 81 AT 82
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 25 EEFNITLTCKAEGFPAPEIKWRREDN------QPISINKRKKVHMHYG-EQLNITKISRT 77
E +TL C AEG P PEI W+R + S++ R +V +G L+I + +
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 78 EMGAYLC-IATKIG 90
+ G Y C A++IG
Sbjct: 74 DSGRYDCEAASRIG 87
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 25 EEFNITLTCKAEGFPAPEIKWRR--------EDNQPISINKRKKVHMHYG-EQLNITKIS 75
E +TL C AEG P PEI W+R E ++ S++ R +V +G L+I +
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDK--SLDGRIEVKGQHGSSSLHIKDVK 71
Query: 76 RTEMGAYLC-IATKIG 90
++ G Y C A++IG
Sbjct: 72 LSDSGRYDCEAASRIG 87
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 25 EEFNITLTCKAEGFPAPEIKWRREDN------QPISINKRKKVHMHYG-EQLNITKISRT 77
E +TL C AEG P PEI W+R + S++ R +V +G L+I + +
Sbjct: 108 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 167
Query: 78 EMGAYLC-IATKIG 90
+ G Y C A++IG
Sbjct: 168 DSGRYDCEAASRIG 181
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT- 87
+T +C+A G P P I W R N + K + +L + I ++ G Y+C AT
Sbjct: 22 MTFSCRASGSPEPAISWFR--NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 79
Query: 88 KIG--PLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVD 140
K G + F ++ H + N T ++ +C A P ++ + VD
Sbjct: 80 KAGEDEKQAFLQVFVQPHIIQLKNETTYENGQV-TLVCDAEGEPIPEITWKRAVD 133
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 7 VPPN-ILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRE----DNQPISINKRKKV 61
VPP IL+ P+ A + + + CKA+GFP P++ W++ + + K +
Sbjct: 713 VPPRWILE----PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNI 768
Query: 62 HMHYGEQLNITKISRTEMGAYLCIA 86
+ G L++ I +T G YLC A
Sbjct: 769 RVEEG-TLHVDNIQKTNEGYYLCEA 792
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY---GE---QLNITKISRTEMGA 81
++ L C A G P PEI W D + I+ N R +V + G+ LNIT + + G
Sbjct: 446 SVFLKCVAGGNPTPEISWEL-DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504
Query: 82 YLCIA-TKIG 90
Y CIA +K+G
Sbjct: 505 YKCIAKSKVG 514
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR-TEMGAYLCIA 86
+ +TC G+P I W R DN+ + IN+++KV + L I + R ++ Y C+A
Sbjct: 544 LIVTCPVAGYPIDSIVWER-DNRALPINRKQKVFPN--GTLIIENVERNSDQATYTCVA 599
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 29 ITLTCKAEGFPAPEIKWRR-----EDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYL 83
+ L C A+G+P P +W + Q + +N R K L I + G YL
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVK---QVSGTLIIKDAVVEDSGKYL 322
Query: 84 CI 85
C+
Sbjct: 323 CV 324
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 31 LTCKAEGFPAPEIKWRREDNQPIS 54
+ CKA G P PEI W R D +
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVG 82
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 11 ILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ-- 68
ILD E S A CK EG+P PE+ W ++DN + + + + Y E+
Sbjct: 48 ILDMEVVEGSAA-------RFDCKVEGYPDPEVMWFKDDN---PVKESRHFQIDYDEEGN 97
Query: 69 --LNITKISRTEMGAYLCIA 86
L I+++ + Y C A
Sbjct: 98 CSLTISEVCGDDDAKYTCKA 117
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 23 VREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG--EQLNITKISRTEMG 80
VR + N TL CK G P P +KW R+ + I+ + ++ G QL I ++ +
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 81 AYLCIATKIG 90
Y AT G
Sbjct: 76 VYQVRATNQG 85
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 23 VREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG--EQLNITKISRTEMG 80
VR + N TL CK G P P +KW R+ + I+ + ++ G QL I ++ +
Sbjct: 14 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 73
Query: 81 AYLCIATKIG 90
Y AT G
Sbjct: 74 VYQVRATNQG 83
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
PS+V E + L C G+P P W R + + + KK + G L I+ ++
Sbjct: 228 PSNVIAIEGKDAVLECCVSGYPPPSFTWLR--GEEVIQLRSKKYSLLGGSNLLISNVTDD 285
Query: 78 EMGAYLCIAT 87
+ G Y C+ T
Sbjct: 286 DSGTYTCVVT 295
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
VPP L+ PS++ E +I C G P P + W + + I + + V G
Sbjct: 311 VPPWFLNH---PSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG---G 364
Query: 67 EQLNITKISRTEMGAYLCIA 86
L I + +++ G Y C+A
Sbjct: 365 SNLRILGVVKSDEGFYQCVA 384
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86
+ L C+ G P P I W++ I +V + L I+++ + G Y C A
Sbjct: 139 VLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSA 196
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 23 VREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG--EQLNITKISRTEMG 80
VR + N TL CK G P P +KW R+ + I+ + ++ G QL I ++ +
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 81 AYLCIATKIG 90
Y AT G
Sbjct: 76 VYQVRATNQG 85
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+VPP I + + ++ A R E +T +C+A G P P I W R N + K +
Sbjct: 94 NVPPAISMPQKSFNATAERGE-EMTFSCRASGSPEPAISWFR--NGKLIEENEKYILKGS 150
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
+L + I ++ G Y+C AT
Sbjct: 151 NTELTVRNIINSDGGPYVCRAT 172
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+VPP I + + ++ A R E +T +C+A G P P I W R N + K +
Sbjct: 190 NVPPAISMPQKSFNATAERGE-EMTFSCRASGSPEPAISWFR--NGKLIEENEKYILKGS 246
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
+L + I ++ G Y+C AT
Sbjct: 247 NTELTVRNIINSDGGPYVCRAT 268
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 11 ILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ-- 68
ILD + S A CK EG+P PE+ W ++DN + + + + Y E+
Sbjct: 48 ILDMDVVEGSAA-------RFDCKVEGYPDPEVMWFKDDN---PVKESRHFQIDYDEEGN 97
Query: 69 --LNITKISRTEMGAYLCIA 86
L I+++ + Y C A
Sbjct: 98 CSLTISEVCGDDDAKYTCKA 117
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRE--DNQPISINKRKKVHMH 64
+PP + + P V T+ C A G P PEI W ++ P + N R K
Sbjct: 104 LPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRS 163
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
G L I T+ G Y C+A+
Sbjct: 164 GG--LQIESSEETDQGKYECVAS 184
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 24/123 (19%)
Query: 30 TLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE------QLNITKISRTEMGAYL 83
+ C+A G P P + W ++ + +N ++ + + E ++ + R E Y
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKK---VNSQRFETIEFDESAGAVLRIQPLRTPRDE-NIYE 80
Query: 84 CIA-------TKIGPLKIFWEIIF-----HMHYGEQLNITKISRTEMGAYLCIATNNVPP 131
C+A T L + E ++ G QL + + RT LC A+ N P
Sbjct: 81 CVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKV--VERTRTATMLCAASGNPDP 138
Query: 132 SVS 134
++
Sbjct: 139 EIT 141
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKK--VHMHYGEQLNITKI 74
P + V+E + CK G P P++ W+ D +P+ + K V + L I +
Sbjct: 15 APGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVRPDSAHKMLVRENGVHSLIIEPV 73
Query: 75 SRTEMGAYLCIAT 87
+ + G Y CIAT
Sbjct: 74 TSRDAGIYTCIAT 86
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRE--DNQPISINKRKKVH 62
+ +PP + P V + T+ C A G P PEI W ++ P + N R K
Sbjct: 102 EQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIK-Q 160
Query: 63 MHYGEQLNITKISRTEMGAYLCIAT 87
+ G L I ++ G Y C+AT
Sbjct: 161 LRSG-ALQIESSEESDQGKYECVAT 184
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 20/121 (16%)
Query: 30 TLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE----QLNITKISRTEMGAYLCI 85
+ C+A G P P I W ++ + +S + + + G ++ ++ R E Y C
Sbjct: 25 SFVCQATGEPKPRITWMKKGKK-VSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IYECT 82
Query: 86 AT-KIGPLKIFWEIIF-----------HMHYGEQLNITKISRTEMGAYLCIATNNVPPSV 133
AT +G + ++ + G QL + + +RT LC A N P +
Sbjct: 83 ATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKART--ATMLCAAGGNPDPEI 140
Query: 134 S 134
S
Sbjct: 141 S 141
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 20 SVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE---QLNITKISR 76
SV V E T GFP PE+ W R D Q IS + V + + + +L I +++
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 77 TEMGAYLCIAT 87
G Y AT
Sbjct: 73 ANSGRYSLKAT 83
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 20 SVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE---QLNITKISR 76
SV V E T GFP PE+ W R D Q IS + V + + + +L I +++
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 77 TEMGAYLCIAT 87
G Y AT
Sbjct: 73 ANSGRYSLKAT 83
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S+ S PP IL P++ + + L CKA G P P I W +E + R +
Sbjct: 2 SSGSSGPPIILQG---PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI 58
Query: 62 HMHYGEQLNITKISRTEMGAYLCIAT 87
Q+ +IS T G Y C+AT
Sbjct: 59 QEQGTLQIKNLRISDT--GTYTCVAT 82
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 11 ILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLN 70
I DTE+ S N+ C A G P P ++W R + +P++ R +V L
Sbjct: 300 ISDTEADIGS-------NLRWGCAAAGKPRPTVRWLR-NGEPLASQNRVEV---LAGDLR 348
Query: 71 ITKISRTEMGAYLCIA 86
+K+S + G Y C+A
Sbjct: 349 FSKLSLEDSGMYQCVA 364
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
+TL C A G P P IKWR+ D S++ + L I +S + G Y C A
Sbjct: 223 QVTLECFAFGNPVPRIKWRKVDG---SLSPQWTTAE---PTLQIPSVSFEDEGTYECEAE 276
Query: 88 KIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYL---CIATNNVPPSV 133
I E L + + ++G+ L C A P+V
Sbjct: 277 NSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTV 325
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 35/137 (25%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ PP I++ PS + V + TL CKAEG P P I+W +
Sbjct: 6 EDFPPRIVEH---PSDLIVSKGEPATLNCKAEGRPTPTIEWYKG---------------- 46
Query: 65 YGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCI 124
GE++ K L + +F+ I H + SR + G Y+C+
Sbjct: 47 -GERVETDKDDPRSHRMLLPSGS------LFFLRIVH---------GRKSRPDEGVYVCV 90
Query: 125 ATNNVPPSVSKRITVDV 141
A N + +VS +++V
Sbjct: 91 ARNYLGEAVSHDASLEV 107
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 13 DTESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNI 71
D PS V V + C+ G P P I W++ D P+ +K +++ + G +L I
Sbjct: 113 DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLD-DKDERITIRGG-KLMI 169
Query: 72 TKISRTEMGAYLCIATKI 89
T +++ G Y+C+ T +
Sbjct: 170 TYTRKSDAGKYVCVGTNM 187
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 35/137 (25%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ PP I++ PS + V + TL CKAEG P P I+W +
Sbjct: 6 EDFPPRIVEH---PSDLIVSKGEPATLNCKAEGRPTPTIEWYK----------------- 45
Query: 65 YGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCI 124
GE++ K L + +F+ I H + SR + G Y+C+
Sbjct: 46 GGERVETDKDDPRSHRMLLPSGS------LFFLRIVH---------GRKSRPDEGVYVCV 90
Query: 125 ATNNVPPSVSKRITVDV 141
A N + +VS +++V
Sbjct: 91 ARNYLGEAVSHDASLEV 107
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
+ + +PP I E+ PS +++ E +T+ C G P PE+ W + I ++ +
Sbjct: 1 GSSRGIPPKI---EALPSDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQEQGRF 56
Query: 62 HMHYGEQLN---ITKISRTEMGAY-LCIATKIG 90
H+ + L I + + + G Y L + + G
Sbjct: 57 HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFG 89
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.012, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMG 80
V V E + C+A+G P P I W +S ++ + L + + G
Sbjct: 395 VFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNG 454
Query: 81 AYLCIATKIG 90
YLCIA G
Sbjct: 455 TYLCIAANAG 464
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRE--DNQPISINKRKKVHMH 64
+P + + P V T+ C A G P PEI W ++ P + N R K +
Sbjct: 104 LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK-QLR 162
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
G L I T+ G Y C+AT
Sbjct: 163 SG-ALQIESSEETDQGKYECVAT 184
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 30 TLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE------QLNITKISRTEMGAYL 83
+ C+A G P P + W ++ + +N ++ + + E ++ + R E Y
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKK---VNSQRFETIEFDESAGAVLRIQPLRTPRDE-NVYE 80
Query: 84 CIA-TKIGPLKIFWEIIF-----------HMHYGEQLNITKISRTEMGAYLCIATNNVPP 131
C+A +G + + ++ ++ G QL + + RT LC A+ N P
Sbjct: 81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV--VERTRTATMLCAASGNPDP 138
Query: 132 SVS 134
++
Sbjct: 139 EIT 141
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 28 NITLTCKAEGFPAPEIKWRR-------EDNQPISINKRKKVHMHYGEQLNITKISRTEMG 80
N+ +TC A G P P +KW + ED+ P+ N + + + N T ++ + +G
Sbjct: 222 NVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLG 279
Query: 81 AYLCIA 86
+A
Sbjct: 280 VIEAVA 285
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 29 ITLTCKAEGFPAPEIKWRR-----EDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYL 83
I+L C A+GFPAP +W + Q + +N R K L I + G YL
Sbjct: 230 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK---QVSGTLIIKDAVVEDSGKYL 286
Query: 84 CI 85
C+
Sbjct: 287 CV 288
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 31 LTCKAEGFPAPEIKWRREDNQPIS 54
+ CKA G P PEI W R D +
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVG 47
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 29 ITLTCKAEGFPAPEIKWRR-----EDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYL 83
I+L C A+GFPAP +W + Q + +N R K L I + G YL
Sbjct: 236 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK---QVSGTLIIKDAVVEDSGKYL 292
Query: 84 CI 85
C+
Sbjct: 293 CV 294
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 31 LTCKAEGFPAPEIKWRREDNQPIS 54
+ CKA G P PEI W R D +
Sbjct: 30 IECKASGNPMPEIIWIRSDGTAVG 53
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRE--DNQPISINKRKKVHMH 64
+P + + P V T+ C A G P PEI W ++ P + N R K +
Sbjct: 104 LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK-QLR 162
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
G L I T+ G Y C+AT
Sbjct: 163 SG-ALQIESSEETDQGKYECVAT 184
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 30 TLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE------QLNITKISRTEMGAYL 83
+ C+A G P P + W ++ + +N ++ + + E ++ + R E Y
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKK---VNSQRFETIEFDESAGAVLRIQPLRTPRDE-NVYE 80
Query: 84 CIA-TKIGPLKIFWEIIF-----------HMHYGEQLNITKISRTEMGAYLCIATNNVPP 131
C+A +G + + ++ ++ G QL + + RT LC A+ N P
Sbjct: 81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV--VERTRTATMLCAASGNPDP 138
Query: 132 SVS 134
++
Sbjct: 139 EIT 141
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRE--DNQPISINKRKKVHMH 64
+P + + P V T+ C A G P PEI W ++ P + N R K +
Sbjct: 104 LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK-QLR 162
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
G L I T+ G Y C+AT
Sbjct: 163 SG-ALQIESSEETDQGKYECVAT 184
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 30 TLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE------QLNITKISRTEMGAYL 83
+ C+A G P P + W ++ + +N ++ + + E ++ + R E Y
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKK---VNSQRFETIEFDESAGAVLRIQPLRTPRDE-NVYE 80
Query: 84 CIA-TKIGPLKIFWEIIF-----------HMHYGEQLNITKISRTEMGAYLCIATNNVPP 131
C+A +G + + ++ ++ G QL + + RT LC A+ N P
Sbjct: 81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV--VERTRTATMLCAASGNPDP 138
Query: 132 SVS 134
++
Sbjct: 139 EIT 141
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 26/101 (25%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
++ L C+A G P PEI+W E P I + + G +L+ I T
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDIXSQ----LWDGARLDRVHIHAT---------- 83
Query: 88 KIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNN 128
+H H ++I + + G Y C A+N+
Sbjct: 84 ------------YHQHAASTISIDTLVEEDTGTYECRASND 112
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 31 LTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
L+C+ G P P+IKW R + I K K L + + + G Y CIAT
Sbjct: 27 LSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 83
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 19 SSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPIS-INKRKKVHMHYGEQ-------LN 70
S V V E +I LTC GF +P ++W+ + + ++ Y ++ +
Sbjct: 9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT 68
Query: 71 ITKISRTEMGAYLCIATKIGPLKIFWEIIFHM 102
+ ++R + G Y C+ ++ G + + E+ H+
Sbjct: 69 FSSVTRKDNGEYTCMVSEEGG-QNYGEVSIHL 99
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+PP I E+ PS +++ E +T+ C G P PE+ W + I ++ + H+
Sbjct: 3 GIPPKI---EALPSDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQEQGRFHIEN 58
Query: 66 GEQLN---ITKISRTEMGAY-LCIATKIG 90
+ L I + + + G Y L + + G
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLGNEFG 87
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 22 AVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE--QLNITKISRTEM 79
+VRE ++ ++ + +G P P + W R + QP+ ++R+ G +L I R +
Sbjct: 16 SVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQRRFAEEAEGGLCRLRILAAERGDA 74
Query: 80 GAYLCIAT 87
G Y C A
Sbjct: 75 GFYTCKAV 82
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 30 TLTCKAEGFPAPEIKWRRE--DNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
T+ C A G P PEI W ++ P + N R K + G L I ++ G Y C+AT
Sbjct: 128 TMLCAAGGNPDPEISWFKDFLPVDPAASNGRIK-QLRSG-ALQIESSEESDQGKYECVAT 185
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 30 TLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE----QLNITKISRTEMGAYLCI 85
+ C+A G P P I W ++ + +S + + + G ++ ++ R E Y C
Sbjct: 26 SFVCQATGEPKPRITWMKKGKK-VSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IYECT 83
Query: 86 AT-KIG------PLKIFWEIIFHMHY-----GEQLNITKISRTEMGAYLCIATNNVPPSV 133
AT +G L + E + G QL + + RT LC A N P +
Sbjct: 84 ATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRT--ATMLCAAGGNPDPEI 141
Query: 134 S 134
S
Sbjct: 142 S 142
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 26/101 (25%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
++ L C+A G P PEI+W E P I + + G +L+ I T
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDICSQ----LWDGARLDRVHIHAT---------- 83
Query: 88 KIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNN 128
+H H ++I + + G Y C A+N+
Sbjct: 84 ------------YHQHAASTISIDTLVEEDTGTYECRASND 112
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 30 TLTCKAEGFPAPEIKWRREDNQPISI-NKRKKVHMHYGEQLNITKISRTE---MGAYLCI 85
T+ C A G P PEI W + D P+ N ++ E + +I ++E G Y C+
Sbjct: 127 TMLCAASGNPDPEITWFK-DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 86 AT 87
AT
Sbjct: 186 AT 187
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 30 TLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE----QLNITKISRTEMGAYLCI 85
+ C+A G P P+I W ++ + +S + + + G ++ + R E Y C+
Sbjct: 25 SFICQATGDPRPKIVWNKKGKK-VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEA-IYECV 82
Query: 86 AT-KIGPLKIFWEIIF-----------HMHYGEQLNITKISRTEMGAYLCIATNNVPPSV 133
A+ +G + + + + G QL + + RT LC A+ N P +
Sbjct: 83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKV--VERTRTATMLCAASGNPDPEI 140
Query: 134 S 134
+
Sbjct: 141 T 141
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86
ITL CK +G P I W +E + S K + L I K+ +++G Y C A
Sbjct: 23 ITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKA 80
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P V + ++ L C+ +G P ++ W ++ + S K K + ++ ++I +
Sbjct: 391 PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 450
Query: 78 EMGAYLCIAT 87
++G Y C A+
Sbjct: 451 DIGEYQCKAS 460
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 74 ISRTEMGAYLCIATKIGPLKIFW-----EIIFHMHYG-------EQLNITKISRTEMGAY 121
++ E G + C T P+KI W EI +Y L + K+++ + G Y
Sbjct: 209 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 268
Query: 122 LCIATN 127
C A+N
Sbjct: 269 TCYASN 274
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
VPP D + +A+ E + T C G +I W +++ + K +
Sbjct: 196 VPP-FFDLKPVSVDLALGE--SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 252
Query: 67 EQLNITKISRTEMGAYLCIATKIG 90
L + K+++ + G Y C A+ +
Sbjct: 253 ATLTVLKVTKGDAGQYTCYASNVA 276
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 31 LTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQL-NIT---KISRTEMGAYLCIA 86
LTC+AEG+P E+ W D+Q +S K + E+L N+T +I+ T + C
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLS-GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTF 194
Query: 87 TKIGP 91
++ P
Sbjct: 195 RRLDP 199
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 31 LTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQL-NIT---KISRTEMGAYLCIA 86
LTC+AEG+P E+ W D+Q +S K + E+L N+T +I+ T + C
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLS-GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTF 194
Query: 87 TKIGP 91
++ P
Sbjct: 195 RRLDP 199
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 31 LTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQL-NIT---KISRTEMGAYLCIA 86
LTC+AEG+P E+ W D+Q +S K + E+L N+T +I+ T + C
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLS-GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTF 194
Query: 87 TKIGP 91
++ P
Sbjct: 195 RRLDP 199
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P +V + E L C G P P + W + D+ ++ + ++ + L I + +
Sbjct: 107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDS---ALRENSRIAVLESGSLRIHNVQKE 163
Query: 78 EMGAYLCIA 86
+ G Y C+A
Sbjct: 164 DAGQYRCVA 172
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 30 TLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86
T C E +P PEI W R + R + + G+ L I + ++ G Y C A
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN-GQLLTILSVEDSDDGIYCCTA 81
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I + + + G Y C+A N++ + SK + ++VE
Sbjct: 155 LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 20 SVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE-QLNITKISRTE 78
+VAV F L+C A G P P I WR+ D +S + + G Q+ K+ T
Sbjct: 19 TVAVDGTF--VLSCVATGSPVPTILWRK-DGVLVSTQDSRIKQLENGVLQIRYAKLGDT- 74
Query: 79 MGAYLCIAT 87
G Y CIA+
Sbjct: 75 -GRYTCIAS 82
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 32.3 bits (72), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMG 80
+ V++ ++T+ CK G PAP + W + +P+S + L I + + G
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTD----SGLVIKGVKNGDKG 373
Query: 81 AYLCIATKIGPLKIFWEII 99
Y C AT K F ++
Sbjct: 374 YYGCRATNEHGDKYFETLV 392
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV-HMHYGEQLNITKISR 76
P S+ V E + +C +G P P + W R+ Q +S + R +V Y I+ +
Sbjct: 15 PRSMTVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTSARHQVTTTKYKSTFEISSVQA 73
Query: 77 TEMGAYLCI 85
++ G Y +
Sbjct: 74 SDEGNYSVV 82
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P V + ++ L C+ +G P ++ W ++ + S K K + ++ ++I +
Sbjct: 199 PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258
Query: 78 EMGAYLCIAT 87
++G Y C A+
Sbjct: 259 DIGEYQCKAS 268
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 74 ISRTEMGAYLCIATKIGPLKIFW-----EIIFHMHYG-------EQLNITKISRTEMGAY 121
++ E G + C T P+KI W EI +Y L + K+++ + G Y
Sbjct: 17 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76
Query: 122 LCIATN 127
C A+N
Sbjct: 77 TCYASN 82
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
++ P D + +A+ E + T C G +I W +++ + K +
Sbjct: 2 AMAPPFFDLKPVSVDLALGE--SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 66 GEQLNITKISRTEMGAYLCIATKIG 90
L + K+++ + G Y C A+ +
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVA 84
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P V + ++ L C+ +G P ++ W ++ + S K K + ++ ++I +
Sbjct: 199 PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258
Query: 78 EMGAYLCIAT 87
++G Y C A+
Sbjct: 259 DIGEYQCKAS 268
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 74 ISRTEMGAYLCIATKIGPLKIFW-----EIIFHMHYG-------EQLNITKISRTEMGAY 121
++ E G + C T P+KI W EI +Y L + K+++ + G Y
Sbjct: 17 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76
Query: 122 LCIATN 127
C A+N
Sbjct: 77 TCYASN 82
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
++ P D + +A+ E + T C G +I W +++ + K +
Sbjct: 2 AMAPPFFDLKPVSVDLALGE--SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 66 GEQLNITKISRTEMGAYLCIATKIG 90
L + K+++ + G Y C A+ +
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVA 84
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV-HMHYGEQLNITKISR 76
P S+ V E + +C +G P P + W R+ Q +S + R +V Y I+ +
Sbjct: 21 PRSMTVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTSARHQVTTTKYKSTFEISSVQA 79
Query: 77 TEMGAYLCI 85
++ G Y +
Sbjct: 80 SDEGNYSVV 88
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
PP + P ++++ E + K G PAP++ W S + K + G
Sbjct: 5 PPRFI---QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 68 QLNITKISR-TEMGAYLCIA 86
I ++ R ++ GAY C+A
Sbjct: 62 HSLIFEVVRASDAGAYACVA 81
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
N+TL C A G P P+I+WR+ +P+ G L I I + G Y C A
Sbjct: 130 NVTLECFALGNPVPDIRWRKV-LEPMPSTAEISTS---GAVLKIFNIQLEDEGIYECEAE 185
Query: 88 KI 89
I
Sbjct: 186 NI 187
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 19 SSVAVREEFNITLTCKAEGFPAPE-IKW--------RREDNQPISINKRKKVHMHYGEQL 69
++V V + N+ L + E FP PE +W + ++ P S N+ ++ Y +L
Sbjct: 296 TTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES---NIRYVSEL 352
Query: 70 NITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNV 129
++T++ TE G Y + + + I F+++ + I R G C+A
Sbjct: 353 HLTRLKGTEGGTYTFLVSNS---DVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFP 409
Query: 130 PPSVS 134
P++
Sbjct: 410 EPTID 414
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 19 SSVAVREEFNITLTCKAEGFPAPE-IKW--------RREDNQPISINKRKKVHMHYGEQL 69
++V V + N+ L + E FP PE +W + ++ P S N+ ++ Y +L
Sbjct: 321 TTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES---NIRYVSEL 377
Query: 70 NITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNV 129
++T++ TE G Y + + + I F+++ + I R G C+A
Sbjct: 378 HLTRLKGTEGGTYTFLVSNS---DVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFP 434
Query: 130 PPSVS 134
P++
Sbjct: 435 EPTID 439
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ-----LN 70
P + V + + L C EG P+I+W ++ + ++++ EQ L+
Sbjct: 7 GAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDG---AVVQNLDQLYIPVSEQHWIGFLS 63
Query: 71 ITKISRTEMGAYLC 84
+ + R++ G Y C
Sbjct: 64 LKSVERSDAGRYWC 77
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P AV +TLTC+ P+P+I W ++ + G Q
Sbjct: 17 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQ--------- 67
Query: 78 EMGAYLCIAT 87
+ G Y C+AT
Sbjct: 68 DQGTYSCVAT 77
>pdb|2PO6|C Chain C, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|G Chain G, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|3SDX|E Chain E, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDX|G Chain G, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
Length = 204
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 22/113 (19%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDN--QPISI-----NKRKKVHMHYGE 67
E +P S+ + E N TL C P ++W ++D P+S+ ++ K + Y
Sbjct: 4 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTA 63
Query: 68 QLN---------ITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNIT 111
L+ IT ++ +Y+C+ + G + +++G +T
Sbjct: 64 TLDADTKQSSLHITASQLSDSASYICVVSDRG------STLGRLYFGRGTQLT 110
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
+I ++C A G P P+I W + DN+ + + V L I ++ + + G Y C A
Sbjct: 683 SIEVSCTASGNPPPQIMWFK-DNETL-VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 740
Query: 88 KI 89
+
Sbjct: 741 SV 742
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
+ + K G+P PEIKW + + P+ N K G L I ++S + G Y I T
Sbjct: 348 VRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKA----GHVLTIMEVSERDTGNYTVILT 401
>pdb|3TYF|A Chain A, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|C Chain C, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|A Chain A, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|G Chain G, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 213
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 22/113 (19%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDN--QPISI-----NKRKKVHMHYGE 67
E +P S+ + E N TL C P ++W ++D P+S+ ++ K + Y
Sbjct: 7 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTA 66
Query: 68 QLN---------ITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNIT 111
L+ IT ++ +Y+C+ + G + +++G +T
Sbjct: 67 TLDADTKQSSLHITASQLSDSASYICVVSDRG------STLGRLYFGRGTQLT 113
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
+I ++C A G P P+I W + DN+ + + V L I ++ + + G Y C A
Sbjct: 27 SIEVSCTASGNPPPQIMWFK-DNETL-VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 88 KI 89
+
Sbjct: 85 SV 86
>pdb|3HUJ|E Chain E, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|G Chain G, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|C Chain C, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|C Chain C, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 209
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 22/113 (19%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDN--QPISI-----NKRKKVHMHYGE 67
E +P S+ + E N TL C P ++W ++D P+S+ ++ K + Y
Sbjct: 6 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTA 65
Query: 68 QLN---------ITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNIT 111
L+ IT ++ +Y+C+ + G + +++G +T
Sbjct: 66 TLDADTKQSSLHITASQLSDSASYICVVSDRG------STLGRLYFGRGTQLT 112
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P AV +TLTC+ P+P+I W ++ + G Q
Sbjct: 10 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQ--------- 60
Query: 78 EMGAYLCIAT 87
+ G Y C+AT
Sbjct: 61 DQGTYSCVAT 70
>pdb|2CDE|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|C Chain C, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|E Chain E, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 192
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 22/113 (19%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDN--QPISI-----NKRKKVHMHYGE 67
E +P S+ + E N TL C P ++W ++D P+S+ ++ K + Y
Sbjct: 4 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTA 63
Query: 68 QLN---------ITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNIT 111
L+ IT ++ +Y+C+ + G + +++G +T
Sbjct: 64 TLDADTKQSSLHITASQLSDSASYICVVSDRG------STLGRLYFGRGTQLT 110
>pdb|2EYR|A Chain A, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
pdb|2EYS|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|C Chain C, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 210
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 22/113 (19%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDN--QPISI-----NKRKKVHMHYGE 67
E +P S+ + E N TL C P ++W ++D P+S+ ++ K + Y
Sbjct: 7 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTA 66
Query: 68 QLN---------ITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNIT 111
L+ IT ++ +Y+C+ + G + +++G +T
Sbjct: 67 TLDADTKQSSLHITASQLSDSASYICVVSDRG------STLGRLYFGRGTQLT 113
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
+ + K G+P PEIKW + + P+ N K G L I ++S + G Y I T
Sbjct: 218 VRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKA----GHVLTIMEVSERDTGNYTVILT 271
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 31 LTCKAEGFPAPEIKWRREDN---QPIS--------INKRKKVHMHYGEQLNITKISRTEM 79
+ CK+ G+P PE WR+++N + IS INK +LNI + TE
Sbjct: 112 MYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT------ELNIVNLQITED 165
Query: 80 -GAYLCIATK-IGPLKI 94
G Y C AT IG +
Sbjct: 166 PGEYECNATNSIGSASV 182
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 18 PSSVAVREEFNITLTCK--AEGFPAPEIKWRREDNQPISINKRKKVHMHYGE-------- 67
P ++ TL C+ +G P PE+ W R D Q + + + + GE
Sbjct: 9 PGNITGARGLTGTLRCQLQVQGEP-PEVHWLR-DGQILELADSTQTQVPLGEDEQDDWIV 66
Query: 68 --QLNITKISRTEMGAYLCI 85
QL IT + ++ G Y C+
Sbjct: 67 VSQLRITSLQLSDTGQYQCL 86
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P + + + +TCKA G P P I W + + N R + + L I
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREE 173
Query: 78 EMGAYLCIA 86
+ G Y C+A
Sbjct: 174 DQGKYECVA 182
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
PP I+ P + VR + C A G P P I WR+ + R V G
Sbjct: 6 PPEII---RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG- 61
Query: 68 QLNITKISRTEMG----AYLCIA 86
++I +I G Y C+A
Sbjct: 62 GISILRIEPVRAGRDDAPYECVA 84
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
P + + + +TCKA G P P I W + + N R + + L I
Sbjct: 119 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREE 175
Query: 78 EMGAYLCIA 86
+ G Y C+A
Sbjct: 176 DQGKYECVA 184
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
PP I+ P + VR + C A G P P I WR+ + R V G
Sbjct: 8 PPEII---RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG- 63
Query: 68 QLNITKISRTEMG----AYLCIA 86
++I +I G Y C+A
Sbjct: 64 GISILRIEPVRAGRDDAPYECVA 86
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPIS-INKRKKVHMHYGEQ-------LNIT 72
V + E + L+C GF +P ++W+ + + K+ Y ++ +
Sbjct: 14 VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73
Query: 73 KISRTEMGAYLCIATKIG 90
++R + G Y C+ ++ G
Sbjct: 74 SVTREDTGTYTCMVSEEG 91
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH---YGEQLNITKI 74
P +V E + +TC+ +P+ I W R D Q + + + ++ L +T
Sbjct: 25 PVAVYTWEGNQVNITCEVFAYPSATISWFR-DGQLLPSSNYSNIKIYNTPSASYLEVTPD 83
Query: 75 SRTEMGAYLCIA-TKIG 90
S + G Y C A +IG
Sbjct: 84 SENDFGNYNCTAVNRIG 100
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ--LNITKIS 75
P V ++E + LTC G P PE+ W + + + ++ + + G I +S
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDDHCNLKFEAGRTAYFTINGVS 287
Query: 76 RTEMGAY-LCIATKIG 90
+ G Y L + K G
Sbjct: 288 TADSGKYGLVVKNKYG 303
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
Length = 104
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPIS-INKRKKVHMHYGEQ------ 68
S+ V + E + L+C GF +P ++W+ + + K+ Y ++
Sbjct: 8 SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 67
Query: 69 -LNITKISRTEMGAYLCIATKIG 90
+ ++R + G Y C+ ++ G
Sbjct: 68 GITFKSVTREDTGTYTCMVSEEG 90
>pdb|2OZ4|A Chain A, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 265
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 12 LDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNI 71
LD P + E T C+A G P PE+K ++ P+ I GE + +
Sbjct: 186 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------GESVTV 235
Query: 72 TKISRTEMGAYLCIA 86
T R G YLC A
Sbjct: 236 T---RDLEGTYLCRA 247
>pdb|1P53|A Chain A, The Crystal Structure Of Icam-1 D3-D5 Fragment
pdb|1P53|B Chain B, The Crystal Structure Of Icam-1 D3-D5 Fragment
Length = 266
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 12 LDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNI 71
LD P + E T C+A G P PE+K ++ P+ I GE + +
Sbjct: 187 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------GESVTV 236
Query: 72 TKISRTEMGAYLCIA 86
T R G YLC A
Sbjct: 237 T---RDLEGTYLCRA 248
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 15 ESTPSSVAVRE-EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITK 73
E+TP S + + +++LTC G +P WR + + P++ K + L +
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---GKVTNEGTTSTLTMNP 60
Query: 74 ISRTEMGAYLCIAT 87
+S +YLC AT
Sbjct: 61 VSFGNEHSYLCTAT 74
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 22 AVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGA 81
AV E + L C G P P I W + QPI R E L+I + G
Sbjct: 22 AVIEGQDFVLQCSVRGTPVPRITWLL-NGQPIQY-ARSTCEAGVAE-LHIQDALPEDHGT 78
Query: 82 YLCIA 86
Y C+A
Sbjct: 79 YTCLA 83
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ--LNITKIS 75
P V ++E + LTC G P PE+ W + + + ++ + G I +S
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE-KALAQTDHCNLKFEAGRTAYFTINGVS 182
Query: 76 RTEMGAY-LCIATKIG 90
+ G Y L + K G
Sbjct: 183 TADSGKYGLVVKNKYG 198
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 15 ESTPSSVAVRE-EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITK 73
E+TP S + + +++LTC G +P WR + + P++ K + L +
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---GKVTNEGTTSTLTMNP 60
Query: 74 ISRTEMGAYLCIAT 87
+S +YLC AT
Sbjct: 61 VSFGNEHSYLCTAT 74
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 15 ESTPSSVAVRE-EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITK 73
E+TP S + + +++LTC G +P WR + + P++ K + L +
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---GKVTNEGTTSTLTMNP 60
Query: 74 ISRTEMGAYLCIAT 87
+S +YLC AT
Sbjct: 61 VSFGNEHSYLCTAT 74
>pdb|1Z7Z|I Chain I, Cryo-Em Structure Of Human Coxsackievirus A21 Complexed
With Five Domain Icam-1kilifi
Length = 450
Score = 29.3 bits (64), Expect = 0.84, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 12 LDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNI 71
LD P + E T C+A G P PE+K ++ P+ I GE + +
Sbjct: 371 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------GESVTV 420
Query: 72 TKISRTEMGAYLCIA 86
T R G YLC A
Sbjct: 421 T---RDLEGTYLCRA 432
>pdb|3O8X|C Chain C, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|C Chain C, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|C Chain C, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|C Chain C, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|C Chain C, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|C Chain C, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|C Chain C, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|C Chain C, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|G Chain G, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|C Chain C, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 209
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQP--ISI-----NKRKKVHMHYGE 67
E +P S+ VR+ N L C P ++W ++D +S+ K K + Y
Sbjct: 6 EQSPQSLVVRQGENCVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRYSA 65
Query: 68 QLN---------ITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105
L+ IT + Y+C+ G + +H+G
Sbjct: 66 TLDKDAKHSTLHITATLLDDTATYICVVGDRG------SALGRLHFG 106
>pdb|1HYR|C Chain C, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
Length = 275
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEI--KWRRE 48
++VPP + T S S E NIT+TC+A GF I WR++
Sbjct: 181 RTVPPMVNVTRSEAS------EGNITVTCRASGFYPWNITLSWRQD 220
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 23 VREEFNITLTCKAEGFPAPEIKWRREDNQ 51
+ E +T TC+ G P P+I W ++ Q
Sbjct: 20 IFEGMPVTFTCRVAGNPKPKIYWFKDGKQ 48
>pdb|1B3J|A Chain A, Structure Of The Mhc Class I Homolog Mic-A, A Gammadelta T
Cell Ligand
Length = 274
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEI--KWRRE 48
++VPP + T S S E NIT+TC+A GF I WR++
Sbjct: 180 RTVPPMVNVTRSEAS------EGNITVTCRASGFYPWNITLSWRQD 219
>pdb|2Q86|A Chain A, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|C Chain C, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 229
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRED 49
E +P S+ VR+ N L C P ++W ++D
Sbjct: 5 EQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQD 39
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 31 LTCKAEGFPAPEIKWRREDNQPIS 54
+ CKA G P PEI W R D +
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVG 47
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 30 TLTCKAEGFPAPEIKWRR-----EDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLC 84
+L C A+ +P P +W + Q + +N R K L I + G YLC
Sbjct: 234 SLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVK---QVSGTLIIKDAVVEDSGKYLC 290
Query: 85 I 85
+
Sbjct: 291 V 291
>pdb|3HE6|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|C Chain C, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3SCM|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
pdb|3TN0|C Chain C, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3QI9|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 207
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQP--ISI-----NKRKKVHMHYGE 67
E +P S+ VR+ N L C P ++W ++D +S+ K K + Y
Sbjct: 4 EQSPQSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRYSA 63
Query: 68 QLN---------ITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105
L+ IT + Y+C+ G + +H+G
Sbjct: 64 TLDKDAKHSTLHITATLLDDTATYICVVGDRG------SALGRLHFG 104
>pdb|3TO4|C Chain C, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 212
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQP--ISI-----NKRKKVHMHYGE 67
E +P S+ VR+ N L C P ++W ++D +S+ K K + Y
Sbjct: 4 EQSPQSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRYSA 63
Query: 68 QLN---------ITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105
L+ IT + Y+C+ G + +H+G
Sbjct: 64 TLDKDAKHSTLHITATLLDDTATYICVVGDRG------SALGRLHFG 104
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRRE----------DNQP-ISINKRKKVHMHYG 66
P++ V N+ CK P P I+W + DN P + I K V+
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK 181
Query: 67 EQ--LNITKISRTEMGAYLCIA 86
E L++ +S + G Y C+A
Sbjct: 182 EMEVLHLRNVSFEDAGEYTCLA 203
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 25 EEFNITLTCKAEGFPAPEIKWRREDNQ 51
E +T TC+ G P P+I W ++ Q
Sbjct: 21 EGMPVTFTCRVAGNPKPKIYWFKDGKQ 47
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 22 AVREEFNITL--TCKAEGFPAPEIKWRRE 48
A+ E +TL +C AEG PAP + W E
Sbjct: 127 ALEEGQGLTLAASCTAEGSPAPSVTWDTE 155
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRRE----------DNQP-ISINKRKKVHMHYG 66
P++ V N+ CK P P I+W + DN P + I K V+
Sbjct: 123 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK 182
Query: 67 EQ--LNITKISRTEMGAYLCIA 86
E L++ +S + G Y C+A
Sbjct: 183 EMEVLHLRNVSFEDAGEYTCLA 204
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRRE----------DNQP-ISINKRKKVHMHYG 66
P++ V N+ CK P P I+W + DN P + I K V+
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK 181
Query: 67 EQ--LNITKISRTEMGAYLCIA 86
E L++ +S + G Y C+A
Sbjct: 182 EMEVLHLRNVSFEDAGEYTCLA 203
>pdb|2AXJ|A Chain A, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
pdb|2AXJ|B Chain B, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
Length = 242
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 32/148 (21%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRRED-NQPIS-------INKRKKVHMHYGEQ 68
+P + +E N+TL+C+ + + W R+D Q + +N +K + G
Sbjct: 7 SPKYLFRKEGQNVTLSCE-QNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYS 65
Query: 69 ----------LNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNI-------- 110
L +T + YLC + G K+F+ + E LN
Sbjct: 66 VSREKKESFPLTVTSAQKNPTAFYLCASRDRGTEKLFFGSGTQLSVLEDLNKVFPPEVAV 125
Query: 111 -----TKISRTEMGAYLCIATNNVPPSV 133
+IS T+ +C+AT P V
Sbjct: 126 FEPSEAEISHTQKATLVCLATGFYPDHV 153
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 29 ITLTCKAEGFPAPEIKWR 46
+ LTC+A G+P E+ W+
Sbjct: 121 VQLTCQARGYPLAEVSWQ 138
>pdb|1WT5|C Chain C, The Crystal Structure Of A Humanized Antibody Fv 528
pdb|1WT5|D Chain D, The Crystal Structure Of A Humanized Antibody Fv 528
Length = 122
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C +++PP+ + V+++
Sbjct: 78 LKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIK 112
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 29 ITLTCKAEGFPAPEIKWR 46
+ LTC+A G+P E+ W+
Sbjct: 120 VQLTCQARGYPLAEVSWQ 137
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
N+ L+C + P+P+ WR IN + H + L I KI+ G Y C +
Sbjct: 576 NLNLSCHSASNPSPQYSWR--------INGIPQQHT---QVLFIAKITPNNNGTYACFVS 624
Query: 88 KIG 90
+
Sbjct: 625 NLA 627
Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 13 DTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNIT 72
D +PS R N++L+C A P + W + N + H ++L I+
Sbjct: 383 DPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN----------IQQH-TQELFIS 431
Query: 73 KISRTEMGAYLCIA 86
I+ G Y C A
Sbjct: 432 NITEKNSGLYTCQA 445
>pdb|1MAJ|A Chain A, Solution Structure Of An Isolated Antibody Vl Domain
pdb|1MAK|A Chain A, Solution Structure Of An Isolated Antibody Vl Domain
Length = 113
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C T +VPP+ ++++
Sbjct: 78 LKISRVEAEDLGIYFCSQTTHVPPTFGGGTKLEIK 112
>pdb|1AFV|H Chain H, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1AFV|K Chain K, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
Length = 220
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 18 PSSVAVREEFNITLTCKAEG--FPAPEIKWRRE 48
P SV VR ++ L+CKA G F + I W ++
Sbjct: 7 PGSVLVRPGASVKLSCKASGYTFTSSWIHWAKQ 39
>pdb|3UTZ|A Chain A, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|D Chain D, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|E Chain E, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
Length = 219
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C ++VPP+ ++++
Sbjct: 78 LKISRVEAEDLGVYYCFQASHVPPTFGSGTKLEIK 112
>pdb|1RJL|B Chain B, Structure Of The Complex Between Ospb-Ct And
Bactericidal Fab-H6831
Length = 221
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 18 PSSVAVREEFNITLTCKAEGF 38
P SV VR ++ L+CKA GF
Sbjct: 7 PGSVLVRPGASVKLSCKASGF 27
>pdb|1IGI|L Chain L, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|A Chain A, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|C Chain C, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 219
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C T +VPP+ ++++
Sbjct: 78 LKISRVEAEDLGIYFCSQTTHVPPTFGGGTKLEIK 112
>pdb|1A4J|L Chain L, Diels Alder Catalytic Antibody Germline Precursor
pdb|1A4J|A Chain A, Diels Alder Catalytic Antibody Germline Precursor
Length = 217
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C + +VPP+ ++++
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPPTFGGGTKLEIK 112
>pdb|1HDM|B Chain B, Histocompatibility Antigen Hla-Dm
Length = 193
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE 42
SA+K+ PN T T S +A+ + T TC E APE
Sbjct: 136 SAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPE 176
>pdb|4I0P|B Chain B, Hla-do In Complex With Hla-dm
pdb|4I0P|F Chain F, Hla-do In Complex With Hla-dm
Length = 191
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE 42
SA+K+ PN T T S +A+ + T TC E APE
Sbjct: 141 SAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPE 181
>pdb|2BC4|B Chain B, Crystal Structure Of Hla-Dm
pdb|2BC4|D Chain D, Crystal Structure Of Hla-Dm
Length = 211
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE 42
SA+K+ PN T T S +A+ + T TC E APE
Sbjct: 143 SAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPE 183
>pdb|4FQX|D Chain D, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|D Chain D, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 199
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE 42
SA+K+ PN T T S +A+ + T TC E APE
Sbjct: 143 SAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPE 183
>pdb|1DBA|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBB|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBJ|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBK|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBM|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|2DBL|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
Length = 216
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C +++VPP+ ++++
Sbjct: 78 LKISRVEAEDLGIYFCSQSSHVPPTFGGGTKLEIK 112
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain
Of Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISIN 56
P S V E ++ L C+ P P++ W+R +N+ + N
Sbjct: 22 PQSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQFN 59
>pdb|2DQT|L Chain L, High Resolution Crystal Structure Of The Complex Of The
Hydrolytic Antibody Fab 6d9 And A Transition-State
Analog
pdb|2DQU|L Chain L, Crystal Form Ii: High Resolution Crystal Structure Of The
Complex Of The Hydrolytic Antibody Fab 6d9 And A
Transition-State Analog
pdb|2DTM|L Chain L, Thermodynamic And Structural Analyses Of Hydrolytic
Mechanism By Catalytic Antibodies
Length = 219
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C ++VPP+ ++++
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEIK 112
>pdb|1IGF|L Chain L, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|1IGF|M Chain M, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|2IGF|L Chain L, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
Length = 219
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C ++VPP+ ++++
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEIK 112
>pdb|1I9I|L Chain L, Native Crystal Structure Of The Recombinant Monoclonal
Wild Type Anti-Testosterone Fab Fragment
pdb|1I9J|L Chain L, Testosterone Complex Structure Of The Recombinant
Monoclonal Wild Type Anti-Testosterone Fab Fragment
Length = 219
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C ++VPP+ ++++
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEIK 112
>pdb|2V7X|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
pdb|2V7X|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
pdb|2V7X|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
Length = 299
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 1 MSAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINK 57
+ AY+ P ++ + P+ A RE I A GFP E+ ED++ + N+
Sbjct: 137 LEAYEVTSPKVIPEQPEPTFYA-REMVAIPSAHLAAGFPLSEVGRPLEDHEIVRFNR 192
>pdb|1A4K|L Chain L, Diels Alder Catalytic Antibody With Transition State
Analogue
pdb|1A4K|A Chain A, Diels Alder Catalytic Antibody With Transition State
Analogue
Length = 217
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I+++ ++G Y C +VPP+ ++++
Sbjct: 78 LKISRVEAEDLGVYFCSQVTHVPPTFGGGTKLEIK 112
>pdb|1JGV|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
pdb|1JGU|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 220
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 108 LNITKISRTEMGAYLCIATNNVPP 131
L I+++ ++G Y C + +VPP
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPP 101
>pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
Length = 364
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 45 WRREDNQPISINKRKKVHMHYGEQLNITKISR 76
WR+++N I ++H+ GE L I+++ +
Sbjct: 49 WRKQNNITAEIKSTDELHLENGEALEISQLLK 80
>pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 364
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 45 WRREDNQPISINKRKKVHMHYGEQLNITKISR 76
WR+++N I ++H+ GE L I+++ +
Sbjct: 49 WRKQNNITAEIKSTDELHLENGEALEISQLLK 80
>pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 360
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 45 WRREDNQPISINKRKKVHMHYGEQLNITKISR 76
WR+++N I ++H+ GE L I+++ +
Sbjct: 49 WRKQNNITAEIKSTDELHLENGEALEISQLLK 80
>pdb|1JLJ|A Chain A, 1.6 Angstrom Crystal Structure Of The Human
Neuroreceptor Anchoring And Molybdenum Cofactor
Biosynthesis Protein Gephyrin
pdb|1JLJ|B Chain B, 1.6 Angstrom Crystal Structure Of The Human
Neuroreceptor Anchoring And Molybdenum Cofactor
Biosynthesis Protein Gephyrin
pdb|1JLJ|C Chain C, 1.6 Angstrom Crystal Structure Of The Human
Neuroreceptor Anchoring And Molybdenum Cofactor
Biosynthesis Protein Gephyrin
Length = 189
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 1 MSAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGF 38
+SAYK VP I + + T +E N+ LT GF
Sbjct: 53 ISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGF 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,167,762
Number of Sequences: 62578
Number of extensions: 155018
Number of successful extensions: 932
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 257
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)