Query psy15390
Match_columns 142
No_of_seqs 125 out of 1173
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 19:47:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 3.7E-23 8.1E-28 152.2 15.3 134 4-142 327-514 (1051)
2 KOG3513|consensus 99.9 3.2E-20 7E-25 137.0 14.2 131 6-142 238-421 (1051)
3 cd05762 Ig8_MLCK Eighth immuno 99.8 1.6E-17 3.5E-22 94.1 11.5 90 9-141 1-90 (98)
4 cd05851 Ig3_Contactin-1 Third 99.8 1.8E-17 3.9E-22 92.2 11.1 88 8-142 1-88 (88)
5 PHA02826 IL-1 receptor-like pr 99.7 2.4E-16 5.3E-21 101.5 12.5 122 19-141 30-226 (227)
6 cd05747 Ig5_Titin_like M5, fif 99.7 2.9E-16 6.4E-21 88.1 11.4 90 7-139 2-91 (92)
7 cd05737 Ig_Myomesin_like_C C-t 99.7 2.8E-16 6.1E-21 88.1 10.8 86 17-141 7-92 (92)
8 cd07693 Ig1_Robo First immunog 99.7 6.2E-16 1.4E-20 87.9 11.9 96 8-141 1-99 (100)
9 cd04975 Ig4_SCFR_like Fourth i 99.7 8.5E-16 1.8E-20 87.3 11.4 91 17-142 9-100 (101)
10 cd05865 Ig1_NCAM-1 First immun 99.7 6.8E-16 1.5E-20 87.0 10.9 89 17-141 6-95 (96)
11 PF07679 I-set: Immunoglobulin 99.7 5.7E-16 1.2E-20 86.5 10.5 90 9-141 1-90 (90)
12 cd04968 Ig3_Contactin_like Thi 99.7 1.7E-15 3.6E-20 84.3 12.0 88 8-142 1-88 (88)
13 cd05870 Ig5_NCAM-2 Fifth immun 99.7 1.6E-15 3.4E-20 86.1 11.6 97 7-141 1-98 (98)
14 cd05730 Ig3_NCAM-1_like Third 99.7 1.8E-15 3.9E-20 85.3 11.5 83 18-141 10-92 (95)
15 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 2.1E-15 4.7E-20 83.4 11.4 84 19-141 3-86 (86)
16 cd05869 Ig5_NCAM-1 Fifth immun 99.7 2.6E-15 5.7E-20 85.0 11.9 97 7-141 1-97 (97)
17 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.7E-15 3.7E-20 84.6 10.8 83 17-142 9-91 (91)
18 KOG4194|consensus 99.7 9.9E-16 2.2E-20 108.1 11.5 131 6-141 501-703 (873)
19 cd05745 Ig3_Peroxidasin Third 99.7 4.7E-16 1E-20 83.8 7.8 74 25-141 1-74 (74)
20 cd05722 Ig1_Neogenin First imm 99.7 2.9E-15 6.4E-20 84.5 11.3 90 17-141 5-95 (95)
21 cd05866 Ig1_NCAM-2 First immun 99.7 2.1E-15 4.6E-20 84.2 10.5 86 17-141 6-91 (92)
22 KOG4221|consensus 99.7 4.3E-15 9.2E-20 111.0 14.2 109 17-128 146-313 (1381)
23 cd05728 Ig4_Contactin-2-like F 99.7 1.9E-15 4.1E-20 83.5 9.6 81 17-141 5-85 (85)
24 cd05732 Ig5_NCAM-1_like Fifth 99.7 5.1E-15 1.1E-19 83.6 11.5 96 7-141 1-96 (96)
25 KOG4194|consensus 99.7 1.7E-15 3.6E-20 107.0 11.2 124 4-131 608-786 (873)
26 cd05867 Ig4_L1-CAM_like Fourth 99.7 3.6E-15 7.9E-20 80.7 10.0 74 26-141 1-75 (76)
27 cd05848 Ig1_Contactin-5 First 99.7 5.1E-15 1.1E-19 83.3 10.9 87 9-139 2-92 (94)
28 cd04977 Ig1_NCAM-1_like First 99.7 6.5E-15 1.4E-19 82.5 11.1 87 17-141 6-92 (92)
29 cd05892 Ig_Myotilin_C C-termin 99.7 3E-15 6.4E-20 80.6 9.2 75 29-141 1-75 (75)
30 cd04972 Ig_TrkABC_d4 Fourth do 99.7 7.3E-15 1.6E-19 82.0 11.1 85 17-141 6-90 (90)
31 cd05852 Ig5_Contactin-1 Fifth 99.7 1.7E-15 3.6E-20 81.3 8.1 73 26-141 1-73 (73)
32 cd05891 Ig_M-protein_C C-termi 99.7 8.9E-15 1.9E-19 82.0 11.3 86 17-141 7-92 (92)
33 cd05868 Ig4_NrCAM Fourth immun 99.6 3.9E-15 8.4E-20 80.6 9.5 75 26-141 1-75 (76)
34 cd05859 Ig4_PDGFR-alpha Fourth 99.6 6E-15 1.3E-19 83.9 10.4 88 20-141 12-99 (101)
35 cd05850 Ig1_Contactin-2 First 99.6 1.4E-14 3.1E-19 81.5 11.7 88 9-140 2-93 (94)
36 PHA02785 IL-beta-binding prote 99.6 7.4E-15 1.6E-19 99.7 12.5 105 22-131 37-202 (326)
37 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 4.2E-15 9E-20 80.1 8.9 74 29-142 1-74 (74)
38 cd05724 Ig2_Robo Second immuno 99.6 9.7E-15 2.1E-19 80.8 10.1 84 17-141 2-86 (86)
39 KOG4221|consensus 99.6 2.5E-15 5.4E-20 112.2 9.5 120 17-139 243-413 (1381)
40 cd05893 Ig_Palladin_C C-termin 99.6 6.1E-15 1.3E-19 79.5 8.5 75 29-141 1-75 (75)
41 cd05723 Ig4_Neogenin Fourth im 99.6 1.2E-14 2.5E-19 77.7 9.5 71 28-141 1-71 (71)
42 cd04973 Ig1_FGFR First immunog 99.6 1.5E-14 3.3E-19 78.8 10.0 78 19-141 2-79 (79)
43 cd05748 Ig_Titin_like Immunogl 99.6 1.7E-14 3.7E-19 77.7 9.7 74 28-141 1-74 (74)
44 cd05857 Ig2_FGFR Second immuno 99.6 2.1E-14 4.4E-19 79.4 10.1 82 21-141 4-85 (85)
45 cd04978 Ig4_L1-NrCAM_like Four 99.6 1.5E-14 3.2E-19 78.3 9.4 75 26-141 1-75 (76)
46 cd05735 Ig8_DSCAM Eight immuno 99.6 3.5E-14 7.7E-19 78.9 10.8 82 26-142 1-82 (88)
47 cd05863 Ig2_VEGFR-3 Second imm 99.6 9.7E-15 2.1E-19 76.8 7.9 64 29-140 1-64 (67)
48 cd05744 Ig_Myotilin_C_like Imm 99.6 3.4E-14 7.4E-19 76.6 9.5 75 29-141 1-75 (75)
49 cd04969 Ig5_Contactin_like Fif 99.6 2.1E-14 4.5E-19 77.1 8.5 73 26-141 1-73 (73)
50 cd05876 Ig3_L1-CAM Third immun 99.6 1.6E-14 3.4E-19 77.2 7.9 71 29-142 1-71 (71)
51 cd05749 Ig2_Tyro3_like Second 99.6 3.8E-14 8.2E-19 77.4 9.1 76 17-139 4-80 (81)
52 cd05773 Ig8_hNephrin_like Eigh 99.6 1.2E-13 2.6E-18 79.7 11.5 99 5-141 1-104 (109)
53 PHA02785 IL-beta-binding prote 99.6 7.5E-14 1.6E-18 94.8 12.2 107 21-132 131-318 (326)
54 KOG4222|consensus 99.6 1.6E-14 3.5E-19 107.4 9.5 124 17-142 137-313 (1281)
55 cd04974 Ig3_FGFR Third immunog 99.6 6.3E-14 1.4E-18 78.2 9.7 86 26-142 1-90 (90)
56 KOG4222|consensus 99.6 2.6E-14 5.6E-19 106.4 10.3 131 7-142 30-223 (1281)
57 cd05849 Ig1_Contactin-1 First 99.6 9.2E-14 2E-18 77.9 10.3 86 9-139 2-91 (93)
58 cd05856 Ig2_FGFRL1-like Second 99.6 4.3E-14 9.4E-19 77.4 8.7 79 21-141 4-82 (82)
59 cd05743 Ig_Perlecan_D2_like Im 99.6 4.7E-14 1E-18 76.7 8.5 67 26-131 1-67 (78)
60 cd05763 Ig_1 Subgroup of the i 99.6 8.5E-14 1.8E-18 75.1 9.0 73 29-141 1-74 (75)
61 cd05764 Ig_2 Subgroup of the i 99.6 7.2E-14 1.6E-18 75.2 8.6 74 26-141 1-74 (74)
62 cd05756 Ig1_IL1R_like First im 99.6 8.6E-14 1.9E-18 78.2 9.0 83 19-141 7-94 (94)
63 cd05854 Ig6_Contactin-2 Sixth 99.5 2E-13 4.3E-18 75.4 9.9 80 27-142 1-82 (85)
64 cd05760 Ig2_PTK7 Second immuno 99.5 7E-14 1.5E-18 75.8 7.9 73 29-141 1-74 (77)
65 cd05726 Ig4_Robo Fhird immunog 99.5 1.5E-13 3.2E-18 76.7 9.4 82 26-142 1-82 (90)
66 cd05752 Ig1_FcgammaR_like Frst 99.5 9.3E-14 2E-18 75.4 7.9 61 17-88 6-67 (78)
67 cd05731 Ig3_L1-CAM_like Third 99.5 8.4E-14 1.8E-18 74.3 7.2 71 29-142 1-71 (71)
68 cd05736 Ig2_Follistatin_like S 99.5 2.8E-13 6.1E-18 73.2 9.3 74 29-142 1-74 (76)
69 cd05858 Ig3_FGFR-2 Third immun 99.5 3E-13 6.4E-18 75.5 9.6 86 26-141 1-89 (90)
70 cd05855 Ig_TrkB_d5 Fifth domai 99.5 2.4E-13 5.2E-18 73.6 8.9 75 31-140 3-77 (79)
71 cd05733 Ig6_L1-CAM_like Sixth 99.5 1.5E-13 3.3E-18 74.5 8.1 72 29-139 1-76 (77)
72 cd05725 Ig3_Robo Third immunog 99.5 1.8E-13 4E-18 72.6 8.1 69 29-141 1-69 (69)
73 cd05734 Ig7_DSCAM Seventh immu 99.5 2.9E-13 6.4E-18 73.7 8.7 79 29-141 1-79 (79)
74 cd05758 Ig5_KIRREL3-like Fifth 99.5 4.2E-13 9E-18 76.1 9.4 94 8-139 2-97 (98)
75 cd05874 Ig6_NrCAM Sixth immuno 99.5 2.9E-13 6.3E-18 73.3 8.2 25 29-54 1-25 (77)
76 cd04970 Ig6_Contactin_like Six 99.5 4.7E-13 1E-17 73.9 9.0 80 27-142 1-82 (85)
77 cd04979 Ig_Semaphorin_C Immuno 99.5 7.3E-13 1.6E-17 73.8 9.9 83 17-141 2-86 (89)
78 cd05864 Ig2_VEGFR-2 Second imm 99.5 1.2E-13 2.7E-18 73.3 6.0 68 29-140 1-69 (70)
79 cd05873 Ig_Sema4D_like Immunog 99.5 3.9E-13 8.4E-18 74.1 7.9 69 17-89 2-70 (87)
80 cd05875 Ig6_hNeurofascin_like 99.5 5.9E-13 1.3E-17 72.1 8.5 72 29-139 1-76 (77)
81 cd05882 Ig1_Necl-1 First (N-te 99.5 3.6E-12 7.7E-17 71.7 11.5 92 18-141 4-95 (95)
82 cd05746 Ig4_Peroxidasin Fourth 99.5 1.8E-13 3.8E-18 72.7 5.9 68 29-139 1-68 (69)
83 cd04976 Ig2_VEGFR Second immun 99.5 2.2E-13 4.7E-18 72.7 6.2 60 29-131 1-60 (71)
84 cd05853 Ig6_Contactin-4 Sixth 99.5 7.6E-13 1.6E-17 72.7 8.1 79 27-142 1-82 (85)
85 cd07702 Ig2_VEGFR-1 Second imm 99.5 2.3E-13 4.9E-18 72.5 5.8 57 29-88 1-57 (72)
86 cd05765 Ig_3 Subgroup of the i 99.5 1.1E-12 2.4E-17 71.7 8.7 81 26-141 1-81 (81)
87 cd05753 Ig2_FcgammaR_like Seco 99.5 7.4E-13 1.6E-17 72.7 7.7 77 18-141 6-83 (83)
88 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 8.3E-13 1.8E-17 70.0 7.6 27 26-53 1-27 (69)
89 cd04967 Ig1_Contactin First Ig 99.4 2.4E-12 5.3E-17 71.9 9.7 42 9-54 2-46 (91)
90 cd07701 Ig1_Necl-3 First (N-te 99.4 3E-12 6.5E-17 72.1 9.4 34 17-50 3-36 (95)
91 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 1.8E-12 4E-17 70.8 7.4 77 31-140 3-79 (81)
92 cd05742 Ig1_VEGFR_like First i 99.4 8.8E-12 1.9E-16 68.6 9.5 81 26-141 1-83 (84)
93 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 2.2E-11 4.7E-16 67.1 10.9 81 26-141 1-82 (84)
94 cd05729 Ig2_FGFR_like Second i 99.4 1.8E-11 3.8E-16 67.4 10.6 82 21-141 4-85 (85)
95 cd05727 Ig2_Contactin-2-like S 99.4 4.2E-12 9.1E-17 71.1 7.3 71 18-89 10-82 (96)
96 cd05754 Ig3_Perlecan_like Thir 99.4 4.4E-12 9.5E-17 70.0 7.1 34 17-51 7-41 (85)
97 cd05898 Ig5_KIRREL3 Fifth immu 99.4 5.1E-11 1.1E-15 67.1 11.2 93 8-138 2-96 (98)
98 cd05845 Ig2_L1-CAM_like Second 99.3 8.7E-12 1.9E-16 69.7 7.3 71 17-89 9-81 (95)
99 cd05717 Ig1_Necl-1-3_like Firs 99.3 3.2E-11 6.9E-16 67.9 9.1 93 17-141 3-95 (95)
100 PF00047 ig: Immunoglobulin do 99.3 1.1E-11 2.3E-16 64.7 6.5 60 26-86 1-64 (64)
101 cd05750 Ig_Pro_neuregulin Immu 99.3 9.8E-12 2.1E-16 66.9 6.5 72 29-137 1-73 (75)
102 smart00408 IGc2 Immunoglobulin 99.3 2.5E-11 5.5E-16 62.6 7.6 60 25-88 1-60 (63)
103 PF13895 Ig_2: Immunoglobulin 99.3 3.8E-11 8.3E-16 65.1 8.1 32 21-53 9-40 (80)
104 cd05757 Ig2_IL1R_like Second i 99.3 1.6E-11 3.5E-16 68.6 6.4 63 21-87 5-72 (92)
105 cd07690 Ig1_CD4 First immunogl 99.3 3E-11 6.6E-16 67.6 7.4 89 21-131 2-90 (94)
106 cd05881 Ig1_Necl-2 First (N-te 99.3 1.1E-10 2.3E-15 65.4 9.5 73 18-90 4-85 (95)
107 cd05895 Ig_Pro_neuregulin-1 Im 99.3 2.6E-11 5.7E-16 65.4 6.7 73 29-137 1-74 (76)
108 cd05864 Ig2_VEGFR-2 Second imm 99.2 8E-11 1.7E-15 62.5 6.9 24 67-90 34-57 (70)
109 cd05871 Ig_Semaphorin_classIII 99.2 1.7E-10 3.6E-15 64.4 8.1 28 19-47 4-31 (91)
110 smart00410 IG_like Immunoglobu 99.2 1.4E-09 3E-14 59.2 11.0 83 20-142 3-86 (86)
111 smart00409 IG Immunoglobulin. 99.2 1.4E-09 3E-14 59.2 11.0 83 20-142 3-86 (86)
112 cd05897 Ig2_IL1R2_like Second 99.2 1.4E-10 3E-15 64.9 6.8 66 22-88 6-76 (95)
113 cd05860 Ig4_SCFR Fourth immuno 99.2 3.7E-09 7.9E-14 59.5 11.9 90 18-142 10-100 (101)
114 cd04976 Ig2_VEGFR Second immun 99.2 3.9E-10 8.4E-15 60.1 7.7 23 67-89 35-57 (71)
115 cd05746 Ig4_Peroxidasin Fourth 99.2 3.6E-10 7.8E-15 59.8 7.3 21 69-89 38-58 (69)
116 PHA02826 IL-1 receptor-like pr 99.2 2.2E-10 4.8E-15 74.1 7.7 68 19-88 137-209 (227)
117 cd05760 Ig2_PTK7 Second immuno 99.1 1.3E-09 2.9E-14 58.9 9.2 21 69-89 40-60 (77)
118 cd05862 Ig1_VEGFR First immuno 99.1 1.6E-09 3.6E-14 59.8 8.9 35 106-141 50-84 (86)
119 cd05900 Ig_Aggrecan Immunoglob 99.1 6.6E-09 1.4E-13 60.1 11.7 38 104-142 72-109 (112)
120 cd05879 Ig_P0 Immunoglobulin ( 99.1 1.2E-08 2.6E-13 59.4 12.2 108 17-141 4-116 (116)
121 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 1.4E-09 3.1E-14 59.3 7.6 23 68-90 47-69 (81)
122 PF13927 Ig_3: Immunoglobulin 99.1 4.7E-10 1E-14 60.0 5.4 74 8-88 1-75 (75)
123 cd05759 Ig2_KIRREL3-like Secon 99.1 6.8E-09 1.5E-13 56.8 9.7 80 28-141 1-82 (82)
124 cd04983 IgV_TCR_alpha_like Imm 99.1 2.6E-09 5.6E-14 61.6 8.3 103 17-142 4-109 (109)
125 cd05751 Ig1_LILRB1_like First 99.0 1.3E-09 2.9E-14 60.8 6.7 40 8-53 2-41 (91)
126 cd05714 Ig_CSPGs_LP Immunoglob 99.0 2.3E-08 5.1E-13 57.3 12.0 38 104-142 66-103 (106)
127 cd05872 Ig_Sema4B_like Immunog 99.0 2.1E-09 4.5E-14 59.0 6.9 65 18-87 3-67 (85)
128 cd05899 IgV_TCR_beta Immunoglo 99.0 5.1E-09 1.1E-13 60.5 8.8 31 17-48 4-34 (110)
129 cd05877 Ig_LP_like Immunoglobu 99.0 1.3E-08 2.9E-13 58.3 10.2 37 105-142 67-103 (106)
130 cd05885 Ig2_Necl-4 Second immu 99.0 3E-09 6.5E-14 57.6 7.0 76 29-141 2-80 (80)
131 cd05713 Ig_MOG_like Immunoglob 99.0 1.5E-08 3.3E-13 57.5 10.1 36 105-141 64-99 (100)
132 cd05878 Ig_Aggrecan_like Immun 99.0 3.2E-08 6.9E-13 57.2 11.5 37 104-141 70-106 (110)
133 cd05774 Ig_CEACAM_D1 First imm 99.0 3.1E-09 6.6E-14 60.7 7.1 101 18-141 5-105 (105)
134 cd05741 Ig_CEACAM_D1_like Firs 99.0 1.5E-08 3.2E-13 56.5 9.1 37 105-141 56-92 (92)
135 cd05715 Ig_P0-like Immunoglobu 99.0 6.6E-08 1.4E-12 56.4 12.0 108 17-141 4-116 (116)
136 cd04980 IgV_L_kappa Immunoglob 99.0 4.8E-08 1E-12 56.0 11.0 32 17-48 6-38 (106)
137 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 6.5E-09 1.4E-13 58.7 7.0 34 19-53 8-52 (104)
138 cd05775 Ig_SLAM-CD84_like_N N- 98.9 1.6E-08 3.4E-13 57.1 8.2 37 105-141 60-96 (97)
139 cd05846 Ig1_MRC-OX-2_like Firs 98.9 4.7E-08 1E-12 55.2 10.0 39 104-142 59-97 (97)
140 cd05739 Ig3_RPTP_IIa_LAR_like 98.9 2E-08 4.4E-13 53.1 7.8 58 79-139 3-68 (69)
141 cd07702 Ig2_VEGFR-1 Second imm 98.9 1.2E-08 2.5E-13 54.4 6.9 49 82-130 3-60 (72)
142 cd05880 Ig_EVA1 Immunoglobulin 98.9 3.8E-08 8.2E-13 57.3 9.5 107 17-141 4-115 (115)
143 cd04982 IgV_TCR_gamma Immunogl 98.9 2.2E-08 4.7E-13 58.4 8.4 32 17-48 4-37 (116)
144 cd00099 IgV Immunoglobulin var 98.9 1.4E-08 3.1E-13 57.9 7.2 27 22-48 2-29 (105)
145 cd05718 Ig1_PVR_like First imm 98.9 9.8E-08 2.1E-12 53.9 10.2 38 104-141 60-97 (98)
146 cd05887 Ig1_Nectin-3_like Firs 98.9 1.2E-07 2.7E-12 53.2 10.3 38 104-141 58-95 (96)
147 cd05752 Ig1_FcgammaR_like Frst 98.9 1.3E-08 2.9E-13 55.1 6.2 64 74-141 12-78 (78)
148 cd05750 Ig_Pro_neuregulin Immu 98.8 2.4E-08 5.2E-13 53.5 6.7 22 68-89 44-65 (75)
149 cd05888 Ig1_Nectin-4_like Frst 98.8 2.1E-07 4.5E-12 52.8 10.7 39 104-142 62-100 (100)
150 cd05711 Ig_FcalphaRI Immunoglo 98.8 2.4E-08 5.2E-13 56.1 6.7 39 8-52 1-39 (94)
151 cd05895 Ig_Pro_neuregulin-1 Im 98.8 2.6E-08 5.6E-13 53.6 6.5 24 67-90 44-67 (76)
152 cd05901 Ig_Versican Immunoglob 98.8 5.3E-07 1.1E-11 52.3 12.1 38 104-142 77-114 (117)
153 PHA03376 BARF1; Provisional 98.8 3.6E-07 7.7E-12 56.7 11.9 118 18-137 18-160 (221)
154 PF07686 V-set: Immunoglobulin 98.8 1.2E-07 2.6E-12 54.6 9.3 31 17-47 7-38 (114)
155 cd05886 Ig1_Nectin-1_like Firs 98.8 4E-07 8.6E-12 51.5 11.0 39 104-142 61-99 (99)
156 cd05757 Ig2_IL1R_like Second i 98.8 3.1E-08 6.6E-13 55.4 6.3 57 75-131 8-77 (92)
157 cd05902 Ig_Neurocan Immunoglob 98.8 2E-07 4.4E-12 53.7 9.6 37 104-141 70-106 (110)
158 cd04967 Ig1_Contactin First Ig 98.8 1.1E-07 2.3E-12 53.1 8.2 58 78-135 20-88 (91)
159 KOG3515|consensus 98.8 2.8E-08 6.1E-13 73.1 7.0 63 22-89 18-81 (741)
160 cd04984 IgV_L_lambda Immunoglo 98.8 8.1E-08 1.8E-12 54.3 7.1 27 22-48 2-30 (98)
161 cd05754 Ig3_Perlecan_like Thir 98.8 7.8E-08 1.7E-12 52.9 6.9 65 74-139 13-84 (85)
162 PHA02987 Ig domain OX-2-like p 98.7 5.3E-07 1.2E-11 55.9 10.8 30 19-48 23-53 (189)
163 cd05758 Ig5_KIRREL3-like Fifth 98.7 1.4E-07 3.1E-12 53.3 7.8 27 74-100 13-40 (98)
164 cd07701 Ig1_Necl-3 First (N-te 98.7 2.5E-07 5.5E-12 52.0 8.7 66 74-141 9-95 (95)
165 cd07706 IgV_TCR_delta Immunogl 98.7 1.7E-07 3.7E-12 54.6 8.2 32 17-48 5-37 (116)
166 cd05712 Ig_Siglec_N Immunoglob 98.7 3.9E-07 8.4E-12 53.4 9.6 32 17-48 5-42 (119)
167 cd05897 Ig2_IL1R2_like Second 98.7 1.2E-07 2.6E-12 53.2 5.9 67 75-141 8-93 (95)
168 cd05883 Ig2_Necl-2 Second immu 98.7 8.2E-07 1.8E-11 48.3 8.8 25 29-54 2-27 (82)
169 cd07700 IgV_CD8_beta Immunoglo 98.6 1.6E-06 3.5E-11 49.8 10.4 27 22-48 2-29 (107)
170 cd05871 Ig_Semaphorin_classIII 98.6 5.3E-07 1.1E-11 50.3 7.6 63 77-141 11-88 (91)
171 cd05761 Ig2_Necl-1-4_like Seco 98.6 1.7E-06 3.8E-11 47.2 9.4 25 29-54 2-27 (82)
172 cd05716 Ig_pIgR Immunoglobulin 98.6 3.5E-07 7.6E-12 51.6 6.3 28 21-48 2-30 (98)
173 cd05889 Ig1_DNAM-1_like First 98.6 5.5E-06 1.2E-10 46.6 10.9 35 104-138 58-92 (96)
174 cd07705 Ig2_Necl-1 Second immu 98.6 3.6E-06 7.8E-11 46.1 9.8 25 29-54 2-27 (83)
175 smart00408 IGc2 Immunoglobulin 98.5 7.2E-07 1.6E-11 45.5 6.5 53 78-130 3-63 (63)
176 cd04981 IgV_H Immunoglobulin ( 98.5 1.1E-06 2.3E-11 51.4 7.7 32 17-48 3-36 (117)
177 cd05771 IgC_Tapasin_R Tapasin- 98.5 7.3E-06 1.6E-10 49.3 10.8 44 4-51 34-79 (139)
178 cd05720 Ig_CD8_alpha Immunoglo 98.5 1.2E-06 2.5E-11 50.1 6.9 27 22-48 2-28 (104)
179 cd05717 Ig1_Necl-1-3_like Firs 98.5 2.7E-06 5.9E-11 47.7 7.9 22 68-89 63-84 (95)
180 cd05755 Ig2_ICAM-1_like Second 98.4 2.9E-06 6.3E-11 47.9 7.2 37 17-54 7-46 (100)
181 cd00098 IgC Immunoglobulin Con 98.4 1.1E-06 2.3E-11 49.3 5.3 31 24-55 11-43 (95)
182 cd05873 Ig_Sema4D_like Immunog 98.4 1.2E-06 2.6E-11 48.3 5.0 54 75-129 9-71 (87)
183 cd07694 Ig2_CD4 Second immunog 98.3 4.7E-06 1E-10 45.5 6.8 61 21-87 9-71 (88)
184 cd05772 IgC_SIRP Signal-regula 98.3 9.7E-06 2.1E-10 46.8 8.2 47 5-54 2-50 (111)
185 PF00047 ig: Immunoglobulin do 98.3 6.8E-06 1.5E-10 42.4 6.6 47 79-125 3-64 (64)
186 cd00096 Ig Immunoglobulin doma 98.3 3.9E-06 8.5E-11 43.3 5.7 59 29-88 1-64 (74)
187 PF13927 Ig_3: Immunoglobulin 98.3 2.6E-06 5.7E-11 45.1 4.9 48 80-127 18-75 (75)
188 cd07698 IgC_MHC_I_alpha3 Class 98.3 2.3E-05 5E-10 43.8 8.6 25 26-51 14-40 (93)
189 cd05884 Ig2_Necl-3 Second immu 98.3 3.4E-05 7.4E-10 42.2 9.0 25 29-54 2-27 (83)
190 cd05741 Ig_CEACAM_D1_like Firs 98.2 1.8E-05 3.8E-10 44.0 7.4 29 63-91 53-81 (92)
191 cd07690 Ig1_CD4 First immunogl 98.2 8.1E-06 1.8E-10 45.7 5.5 21 77-97 7-27 (94)
192 smart00406 IGv Immunoglobulin 98.2 1.2E-05 2.6E-10 43.3 6.1 20 105-124 61-80 (81)
193 cd05845 Ig2_L1-CAM_like Second 98.2 7.9E-06 1.7E-10 45.8 5.3 59 73-131 14-84 (95)
194 cd05751 Ig1_LILRB1_like First 98.1 2.2E-05 4.7E-10 43.7 6.9 68 74-142 13-91 (91)
195 cd07699 IgC_L Immunoglobulin C 98.1 3.1E-05 6.8E-10 43.9 7.4 32 22-54 13-46 (100)
196 cd05896 Ig1_IL1RAPL-1_like Fir 98.1 1.8E-05 4E-10 44.8 6.1 37 104-141 68-104 (104)
197 cd05774 Ig_CEACAM_D1 First imm 98.1 4.7E-05 1E-09 43.5 7.8 31 60-90 63-93 (105)
198 cd05727 Ig2_Contactin-2-like S 98.1 1.7E-05 3.6E-10 44.6 5.8 55 77-131 18-85 (96)
199 smart00407 IGc1 Immunoglobulin 98.1 0.00015 3.3E-09 38.8 8.9 24 29-53 2-27 (75)
200 KOG1480|consensus 98.1 1.1E-05 2.3E-10 59.6 5.5 128 8-141 24-218 (909)
201 cd05771 IgC_Tapasin_R Tapasin- 98.0 5.4E-05 1.2E-09 45.5 7.7 70 68-137 2-76 (139)
202 PF08205 C2-set_2: CD80-like C 98.0 6.6E-05 1.4E-09 41.5 6.7 27 26-53 14-41 (89)
203 cd05881 Ig1_Necl-2 First (N-te 97.9 0.0003 6.5E-09 39.5 8.8 65 75-141 10-95 (95)
204 cd05770 IgC_beta2m Class I maj 97.9 0.00037 8E-09 39.0 8.7 30 24-54 13-44 (93)
205 cd04983 IgV_TCR_alpha_like Imm 97.9 0.00017 3.8E-09 41.3 7.7 22 68-89 71-92 (109)
206 cd00099 IgV Immunoglobulin var 97.9 0.0001 2.2E-09 41.9 6.5 26 105-130 66-91 (105)
207 cd05766 IgC_MHC_II_beta Class 97.8 0.00037 8.1E-09 39.0 8.3 31 24-55 12-44 (94)
208 cd05769 IgC_TCR_beta T cell re 97.8 0.00047 1E-08 40.1 8.0 33 22-55 14-48 (115)
209 cd05768 IgC_CH4 CH4 domain (fo 97.8 0.0003 6.6E-09 40.0 7.1 31 23-54 13-45 (102)
210 cd05853 Ig6_Contactin-4 Sixth 97.8 2.1E-05 4.5E-10 43.2 2.1 25 65-89 45-69 (85)
211 cd07692 Ig_CD3_epsilon Immunog 97.7 0.00013 2.8E-09 37.6 4.7 52 23-88 4-55 (65)
212 cd04984 IgV_L_lambda Immunoglo 97.7 0.00058 1.3E-08 38.4 7.6 23 106-128 63-85 (98)
213 cd05719 Ig2_PVR_like Second im 97.7 0.0013 2.7E-08 37.0 8.8 23 25-47 14-37 (95)
214 cd05725 Ig3_Robo Third immunog 97.7 4.9E-05 1.1E-09 39.9 2.9 22 69-90 37-58 (69)
215 cd05854 Ig6_Contactin-2 Sixth 97.7 5.2E-05 1.1E-09 41.6 2.8 26 66-91 46-71 (85)
216 cd05892 Ig_Myotilin_C C-termin 97.6 6.1E-05 1.3E-09 40.4 2.8 23 68-90 42-64 (75)
217 cd05721 IgV_CTLA-4 Immunoglobu 97.6 0.0022 4.7E-08 37.1 9.1 31 18-48 5-38 (115)
218 cd05865 Ig1_NCAM-1 First immun 97.6 7.3E-05 1.6E-09 42.1 3.1 24 66-89 59-82 (96)
219 cd05713 Ig_MOG_like Immunoglob 97.6 0.00042 9.1E-09 39.1 6.1 66 26-91 1-89 (100)
220 cd05880 Ig_EVA1 Immunoglobulin 97.6 0.00019 4.1E-09 41.8 4.6 26 66-91 78-103 (115)
221 cd05855 Ig_TrkB_d5 Fifth domai 97.6 0.00011 2.4E-09 39.8 3.2 23 67-89 44-66 (79)
222 cd05767 IgC_MHC_II_alpha Class 97.6 0.0031 6.7E-08 35.3 9.1 29 25-54 14-44 (94)
223 cd05866 Ig1_NCAM-2 First immun 97.6 8.1E-05 1.8E-09 41.5 2.7 24 67-90 56-79 (92)
224 cd04977 Ig1_NCAM-1_like First 97.5 0.00012 2.6E-09 40.8 3.3 24 66-89 56-79 (92)
225 cd05742 Ig1_VEGFR_like First i 97.5 8.3E-05 1.8E-09 40.6 2.6 25 66-90 48-72 (84)
226 cd05861 Ig1_PDGFR-alphabeta Fr 97.5 0.00012 2.7E-09 40.0 3.2 25 66-90 45-69 (84)
227 cd04974 Ig3_FGFR Third immunog 97.5 0.00011 2.4E-09 40.7 3.0 24 67-90 55-78 (90)
228 cd05893 Ig_Palladin_C C-termin 97.5 8.3E-05 1.8E-09 39.8 2.4 23 68-90 42-64 (75)
229 PHA02633 hypothetical protein; 97.5 0.0004 8.6E-09 35.3 4.6 36 105-141 17-52 (63)
230 cd05870 Ig5_NCAM-2 Fifth immun 97.5 0.00014 3.1E-09 40.9 3.4 24 67-90 64-87 (98)
231 cd05735 Ig8_DSCAM Eight immuno 97.5 0.00013 2.9E-09 40.3 3.0 23 67-89 47-69 (88)
232 cd05858 Ig3_FGFR-2 Third immun 97.5 8.8E-05 1.9E-09 41.1 2.2 24 67-90 55-78 (90)
233 cd05763 Ig_1 Subgroup of the i 97.5 0.00019 4.2E-09 38.2 3.5 22 68-89 41-62 (75)
234 cd05744 Ig_Myotilin_C_like Imm 97.5 0.00016 3.5E-09 38.7 3.1 23 68-90 42-64 (75)
235 cd05879 Ig_P0 Immunoglobulin ( 97.5 0.0013 2.9E-08 38.3 7.1 26 66-91 79-104 (116)
236 cd05862 Ig1_VEGFR First immuno 97.5 0.00017 3.6E-09 39.7 3.2 64 26-89 1-72 (86)
237 PF07654 C1-set: Immunoglobuli 97.5 0.0018 3.8E-08 35.3 7.3 30 25-55 7-38 (83)
238 cd05740 Ig_CEACAM_D4 Fourth im 97.5 0.00014 3.1E-09 40.4 2.9 24 68-91 56-79 (91)
239 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0042 9E-08 34.9 8.7 22 26-47 15-37 (95)
240 cd05869 Ig5_NCAM-1 Fifth immun 97.4 0.0002 4.2E-09 40.3 3.3 24 67-90 63-86 (97)
241 cd05732 Ig5_NCAM-1_like Fifth 97.4 0.00019 4.2E-09 40.1 3.3 24 67-90 62-85 (96)
242 cd05748 Ig_Titin_like Immunogl 97.4 0.00021 4.5E-09 38.0 3.2 22 68-89 41-62 (74)
243 cd07697 IgC_TCR_gamma T cell r 97.4 0.0015 3.2E-08 36.8 6.7 31 23-54 13-45 (96)
244 cd05886 Ig1_Nectin-1_like Firs 97.4 0.00027 5.8E-09 40.0 3.7 25 67-91 63-87 (99)
245 cd05872 Ig_Sema4B_like Immunog 97.4 0.00069 1.5E-08 37.2 5.2 47 79-126 13-67 (85)
246 cd05899 IgV_TCR_beta Immunoglo 97.4 0.0016 3.5E-08 37.4 7.1 25 105-129 71-95 (110)
247 cd05847 IgC_CH2_IgE CH2 domain 97.4 0.0016 3.4E-08 36.5 6.7 28 25-53 13-42 (94)
248 cd07696 IgC_CH3 CH3 domain (th 97.4 0.00038 8.1E-09 39.2 4.2 29 22-51 10-41 (96)
249 cd05711 Ig_FcalphaRI Immunoglo 97.4 0.002 4.4E-08 36.0 7.0 37 105-141 54-94 (94)
250 cd05851 Ig3_Contactin-1 Third 97.4 0.00023 5.1E-09 39.3 2.9 24 68-91 54-77 (88)
251 cd05902 Ig_Neurocan Immunoglob 97.4 0.001 2.2E-08 38.4 5.6 63 26-88 2-93 (110)
252 cd05743 Ig_Perlecan_D2_like Im 97.3 0.00022 4.7E-09 38.4 2.7 23 68-90 43-65 (78)
253 cd05894 Ig_C5_MyBP-C C5 immuno 97.3 0.00032 6.9E-09 38.6 3.3 24 66-89 51-74 (86)
254 cd05901 Ig_Versican Immunoglob 97.3 0.0043 9.3E-08 36.2 8.1 23 67-89 79-101 (117)
255 cd05859 Ig4_PDGFR-alpha Fourth 97.3 0.00021 4.6E-09 40.6 2.6 26 65-90 63-88 (101)
256 cd05765 Ig_3 Subgroup of the i 97.3 0.00031 6.8E-09 37.9 3.1 25 65-89 45-69 (81)
257 cd05737 Ig_Myomesin_like_C C-t 97.3 0.0003 6.6E-09 39.1 3.0 22 68-89 59-80 (92)
258 cd04968 Ig3_Contactin_like Thi 97.3 0.00038 8.3E-09 38.3 3.3 23 68-90 54-76 (88)
259 cd05888 Ig1_Nectin-4_like Frst 97.3 0.00045 9.7E-09 39.1 3.6 63 28-90 2-87 (100)
260 cd05882 Ig1_Necl-1 First (N-te 97.3 0.00034 7.4E-09 39.3 3.0 22 67-88 62-83 (95)
261 cd05889 Ig1_DNAM-1_like First 97.3 0.00054 1.2E-08 38.5 3.7 66 27-92 1-85 (96)
262 cd07689 Ig2_VCAM-1 Second immu 97.3 0.0024 5.3E-08 35.9 6.2 30 23-53 12-44 (99)
263 cd05887 Ig1_Nectin-3_like Firs 97.2 0.00068 1.5E-08 38.1 3.7 65 27-91 1-84 (96)
264 cd04973 Ig1_FGFR First immunog 97.2 0.00043 9.4E-09 37.3 2.8 21 69-89 47-67 (79)
265 cd04985 IgC_CH1 CH1 domain (fi 97.2 0.0034 7.4E-08 35.2 6.4 27 25-52 15-43 (95)
266 cd05775 Ig_SLAM-CD84_like_N N- 97.2 0.001 2.2E-08 37.5 4.2 67 24-91 2-85 (97)
267 cd05863 Ig2_VEGFR-3 Second imm 97.1 0.00032 7E-09 36.7 1.9 22 69-90 33-54 (67)
268 PHA02982 hypothetical protein; 97.1 0.028 6E-07 36.0 10.5 117 21-138 34-170 (251)
269 cd05730 Ig3_NCAM-1_like Third 97.1 0.00058 1.3E-08 38.1 2.9 24 68-91 59-82 (95)
270 cd05715 Ig_P0-like Immunoglobu 97.1 0.00092 2E-08 38.9 3.8 25 67-91 80-104 (116)
271 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.0018 3.9E-08 33.7 4.3 49 26-88 6-54 (69)
272 cd05747 Ig5_Titin_like M5, fif 97.1 0.00074 1.6E-08 37.5 3.2 23 67-89 59-81 (92)
273 cd05762 Ig8_MLCK Eighth immuno 97.1 0.00058 1.3E-08 38.5 2.7 23 68-90 57-79 (98)
274 cd05736 Ig2_Follistatin_like S 97.1 0.00084 1.8E-08 35.8 3.2 22 68-89 40-61 (76)
275 PF07679 I-set: Immunoglobulin 97.1 0.00063 1.4E-08 37.4 2.7 22 68-89 57-78 (90)
276 cd05756 Ig1_IL1R_like First im 97.1 0.00068 1.5E-08 37.9 2.8 24 66-89 59-82 (94)
277 PF07354 Sp38: Zona-pellucida- 97.0 0.0015 3.2E-08 43.0 4.6 49 38-88 10-58 (271)
278 cd07694 Ig2_CD4 Second immunog 97.0 0.015 3.3E-07 31.9 7.9 47 82-128 19-73 (88)
279 cd04982 IgV_TCR_gamma Immunogl 97.0 0.0064 1.4E-07 35.2 6.8 24 105-128 76-99 (116)
280 cd05857 Ig2_FGFR Second immuno 97.0 0.0011 2.4E-08 36.1 3.3 23 67-89 51-73 (85)
281 cd05900 Ig_Aggrecan Immunoglob 97.0 0.0039 8.5E-08 36.1 5.7 64 25-88 1-95 (112)
282 cd05728 Ig4_Contactin-2-like F 97.0 0.00079 1.7E-08 36.8 2.7 23 69-91 53-75 (85)
283 cd04972 Ig_TrkABC_d4 Fourth do 97.0 0.0011 2.4E-08 36.6 3.3 23 68-90 57-79 (90)
284 cd05714 Ig_CSPGs_LP Immunoglob 97.0 0.00072 1.6E-08 38.6 2.5 65 25-89 1-90 (106)
285 cd05852 Ig5_Contactin-1 Fifth 97.0 0.00062 1.3E-08 36.2 2.1 22 69-90 41-62 (73)
286 cd05718 Ig1_PVR_like First imm 97.0 0.0014 3.1E-08 36.6 3.7 63 27-89 1-84 (98)
287 cd05745 Ig3_Peroxidasin Third 97.0 0.00075 1.6E-08 35.9 2.3 21 69-89 42-62 (74)
288 cd07706 IgV_TCR_delta Immunogl 96.9 0.014 3E-07 33.8 7.8 24 105-128 71-94 (116)
289 KOG3515|consensus 96.9 0.0048 1E-07 46.5 6.8 121 18-140 307-491 (741)
290 cd05878 Ig_Aggrecan_like Immun 96.9 0.0085 1.8E-07 34.5 6.5 65 25-89 1-94 (110)
291 cd05876 Ig3_L1-CAM Third immun 96.9 0.00077 1.7E-08 35.5 2.0 23 68-90 37-59 (71)
292 cd00096 Ig Immunoglobulin doma 96.9 0.0066 1.4E-07 30.7 5.6 48 82-129 3-66 (74)
293 cd05846 Ig1_MRC-OX-2_like Firs 96.9 0.0014 3E-08 36.9 3.0 65 26-90 1-84 (97)
294 cd05773 Ig8_hNephrin_like Eigh 96.8 0.0018 3.9E-08 37.2 3.4 25 66-90 68-93 (109)
295 cd05723 Ig4_Neogenin Fourth im 96.8 0.0014 3E-08 34.5 2.7 21 69-89 39-59 (71)
296 cd04969 Ig5_Contactin_like Fif 96.8 0.00095 2.1E-08 35.3 2.0 21 69-89 41-61 (73)
297 cd05731 Ig3_L1-CAM_like Third 96.8 0.00081 1.8E-08 35.2 1.5 23 68-90 37-59 (71)
298 cd04970 Ig6_Contactin_like Six 96.8 0.00088 1.9E-08 36.6 1.7 26 65-90 45-70 (85)
299 PF11465 Receptor_2B4: Natural 96.8 0.0069 1.5E-07 34.4 5.2 37 105-141 70-106 (108)
300 cd07704 Ig2_Nectin-3-4_like Se 96.7 0.014 3E-07 32.9 6.3 30 18-47 8-39 (97)
301 cd05877 Ig_LP_like Immunoglobu 96.7 0.0017 3.7E-08 37.0 2.7 64 25-88 1-89 (106)
302 cd05726 Ig4_Robo Fhird immunog 96.7 0.0016 3.5E-08 36.0 2.5 28 64-91 44-71 (90)
303 cd04975 Ig4_SCFR_like Fourth i 96.7 0.0014 3E-08 37.2 2.2 24 66-89 64-87 (101)
304 cd05734 Ig7_DSCAM Seventh immu 96.7 0.002 4.4E-08 34.6 2.7 26 65-90 42-67 (79)
305 KOG1480|consensus 96.7 0.0021 4.7E-08 48.1 3.5 79 17-98 135-214 (909)
306 cd04986 IgC_CH2 CH2 domain (se 96.7 0.012 2.5E-07 33.3 5.7 30 22-52 15-47 (99)
307 cd05724 Ig2_Robo Second immuno 96.7 0.0024 5.2E-08 34.8 2.9 23 69-91 53-75 (86)
308 cd05867 Ig4_L1-CAM_like Fourth 96.7 0.0016 3.5E-08 34.7 2.2 23 68-90 42-64 (76)
309 cd05738 Ig2_RPTP_IIa_LAR_like 96.6 0.0018 3.9E-08 34.4 2.3 23 69-91 40-62 (74)
310 cd05733 Ig6_L1-CAM_like Sixth 96.5 0.0045 9.7E-08 33.1 3.4 23 69-91 41-67 (77)
311 cd04978 Ig4_L1-NrCAM_like Four 96.5 0.0021 4.5E-08 34.2 2.0 24 67-90 41-64 (76)
312 cd05764 Ig_2 Subgroup of the i 96.4 0.0032 6.9E-08 33.3 2.4 22 69-90 42-63 (74)
313 cd05868 Ig4_NrCAM Fourth immun 96.4 0.0029 6.4E-08 33.8 2.0 22 69-90 43-64 (76)
314 cd05716 Ig_pIgR Immunoglobulin 96.3 0.0062 1.3E-07 34.1 3.4 22 107-128 65-86 (98)
315 cd05856 Ig2_FGFRL1-like Second 96.3 0.003 6.6E-08 33.9 2.0 23 68-90 49-71 (82)
316 PF07686 V-set: Immunoglobulin 96.3 0.0035 7.5E-08 35.7 2.3 23 67-89 79-101 (114)
317 cd00098 IgC Immunoglobulin Con 96.2 0.026 5.6E-07 31.2 5.6 54 77-130 13-86 (95)
318 cd05898 Ig5_KIRREL3 Fifth immu 96.2 0.0072 1.6E-07 34.1 3.0 23 67-89 64-87 (98)
319 cd05753 Ig2_FcgammaR_like Seco 96.2 0.0043 9.4E-08 33.8 2.0 21 69-89 50-70 (83)
320 cd05891 Ig_M-protein_C C-termi 96.1 0.0051 1.1E-07 34.2 2.2 23 67-89 58-80 (92)
321 cd05874 Ig6_NrCAM Sixth immuno 96.1 0.011 2.5E-07 31.6 3.4 24 116-139 53-76 (77)
322 smart00409 IG Immunoglobulin. 96.1 0.011 2.5E-07 31.3 3.4 24 66-89 50-73 (86)
323 smart00410 IG_like Immunoglobu 96.1 0.011 2.5E-07 31.3 3.4 24 66-89 50-73 (86)
324 cd04979 Ig_Semaphorin_C Immuno 95.9 0.0058 1.3E-07 33.6 1.8 21 69-89 53-73 (89)
325 PF05790 C2-set: Immunoglobuli 95.9 0.12 2.6E-06 28.0 6.8 36 105-141 42-78 (80)
326 cd05875 Ig6_hNeurofascin_like 95.8 0.018 3.9E-07 30.8 3.5 23 69-91 41-67 (77)
327 cd04980 IgV_L_kappa Immunoglob 95.8 0.0065 1.4E-07 34.6 1.9 21 68-88 72-92 (106)
328 cd05712 Ig_Siglec_N Immunoglob 95.8 0.013 2.8E-07 34.2 3.0 22 106-127 80-101 (119)
329 PF06328 Lep_receptor_Ig: Ig-l 95.7 0.14 3.1E-06 28.3 6.9 65 18-85 10-80 (89)
330 smart00406 IGv Immunoglobulin 95.7 0.006 1.3E-07 32.5 1.3 59 28-86 1-81 (81)
331 cd05848 Ig1_Contactin-5 First 95.7 0.013 2.8E-07 32.7 2.6 23 69-91 60-83 (94)
332 cd05860 Ig4_SCFR Fourth immuno 95.5 0.018 4E-07 32.6 2.9 25 65-89 63-87 (101)
333 PF08204 V-set_CD47: CD47 immu 95.5 0.0072 1.6E-07 35.8 1.2 31 22-53 23-58 (130)
334 cd05729 Ig2_FGFR_like Second i 95.5 0.019 4.2E-07 30.8 2.9 23 67-89 51-73 (85)
335 PHA02633 hypothetical protein; 95.5 0.021 4.5E-07 29.1 2.7 25 65-89 16-40 (63)
336 PHA02987 Ig domain OX-2-like p 95.5 0.018 4E-07 36.2 3.0 24 66-89 84-107 (189)
337 cd07693 Ig1_Robo First immunog 95.4 0.019 4.1E-07 31.9 2.7 21 71-91 68-88 (100)
338 cd05849 Ig1_Contactin-1 First 95.4 0.021 4.5E-07 31.8 2.8 22 69-90 59-81 (93)
339 cd05720 Ig_CD8_alpha Immunoglo 95.1 0.018 3.9E-07 32.7 2.0 20 107-126 70-89 (104)
340 cd05850 Ig1_Contactin-2 First 95.0 0.029 6.3E-07 31.2 2.7 23 69-91 60-83 (94)
341 cd07700 IgV_CD8_beta Immunoglo 95.0 0.018 4E-07 32.9 1.9 20 68-87 73-92 (107)
342 PF13895 Ig_2: Immunoglobulin 94.7 0.029 6.2E-07 29.6 2.0 30 112-141 51-80 (80)
343 PHA03376 BARF1; Provisional 94.6 0.1 2.2E-06 33.1 4.4 26 103-128 84-109 (221)
344 KOG4597|consensus 94.4 0.14 3E-06 36.9 5.2 28 20-47 205-232 (560)
345 cd04981 IgV_H Immunoglobulin ( 94.4 0.065 1.4E-06 31.2 3.2 17 69-85 78-94 (117)
346 PHA02914 Immunoglobulin-like d 94.3 0.58 1.3E-05 33.2 7.9 70 19-89 272-368 (500)
347 cd05755 Ig2_ICAM-1_like Second 94.3 0.41 8.8E-06 27.2 6.2 56 75-131 14-87 (100)
348 cd05749 Ig2_Tyro3_like Second 94.2 0.08 1.7E-06 28.7 3.1 15 77-91 57-71 (81)
349 PHA03042 CD47-like protein; Pr 93.6 0.34 7.3E-06 32.5 5.6 59 23-88 28-91 (286)
350 PHA02865 MHC-like TNF binding 93.2 0.83 1.8E-05 31.8 7.1 21 28-49 216-238 (338)
351 cd05722 Ig1_Neogenin First imm 93.1 0.097 2.1E-06 29.0 2.4 15 75-89 67-81 (95)
352 PF07354 Sp38: Zona-pellucida- 92.7 0.24 5.3E-06 33.0 4.0 30 100-129 31-60 (271)
353 cd05885 Ig2_Necl-4 Second immu 92.4 0.21 4.5E-06 27.1 2.9 27 65-91 41-67 (80)
354 PHA03240 envelope glycoprotein 92.0 0.62 1.4E-05 30.1 5.0 66 19-84 31-122 (258)
355 cd05759 Ig2_KIRREL3-like Secon 91.4 0.24 5.3E-06 26.6 2.5 24 67-90 46-69 (82)
356 cd07691 Ig_CD3_gamma_delta Imm 91.0 0.92 2E-05 23.8 4.2 36 92-127 17-54 (69)
357 cd07698 IgC_MHC_I_alpha3 Class 90.6 1.8 3.9E-05 23.9 6.3 53 77-129 14-83 (93)
358 PHA03052 Hypothetical protein; 90.4 1.6 3.4E-05 22.8 5.2 35 18-53 4-41 (69)
359 PHA03189 UL14 tegument protein 90.0 4.7 0.0001 27.8 8.2 21 18-38 59-79 (348)
360 PHA03270 envelope glycoprotein 87.3 9.2 0.0002 27.8 11.2 34 20-54 228-264 (466)
361 PF05790 C2-set: Immunoglobuli 86.5 3.6 7.9E-05 22.3 6.0 22 66-87 42-63 (80)
362 PHA02982 hypothetical protein; 84.6 8.8 0.00019 25.1 7.4 31 101-131 95-125 (251)
363 PF11465 Receptor_2B4: Natural 84.5 1.7 3.6E-05 25.0 3.0 26 65-90 69-94 (108)
364 PHA03042 CD47-like protein; Pr 83.2 12 0.00026 25.4 7.0 50 80-130 34-94 (286)
365 PHA03282 envelope glycoprotein 81.5 4.7 0.0001 29.5 4.8 49 92-141 111-160 (540)
366 PHA02914 Immunoglobulin-like d 79.2 6 0.00013 28.4 4.7 24 68-91 82-105 (500)
367 PHA03271 envelope glycoprotein 79.0 15 0.00032 26.7 6.5 34 21-55 255-291 (490)
368 cd05721 IgV_CTLA-4 Immunoglobu 77.4 3.5 7.6E-05 24.1 2.7 20 107-126 75-94 (115)
369 PF02440 Adeno_E3_CR1: Adenovi 75.7 9.2 0.0002 19.7 5.7 21 23-47 2-22 (63)
370 cd05766 IgC_MHC_II_beta Class 73.0 14 0.0003 20.5 6.5 53 77-129 14-83 (94)
371 cd07697 IgC_TCR_gamma T cell r 72.3 15 0.00032 20.6 6.2 23 77-99 16-40 (96)
372 cd05770 IgC_beta2m Class I maj 71.3 16 0.00034 20.4 6.4 48 81-128 19-82 (93)
373 PHA03269 envelope glycoprotein 70.9 41 0.0009 25.1 10.8 35 20-55 336-373 (566)
374 PHA03286 envelope glycoprotein 70.6 13 0.00029 27.1 4.7 38 104-141 125-162 (492)
375 PHA03283 envelope glycoprotein 66.6 28 0.0006 26.1 5.7 39 103-142 131-169 (542)
376 PF06832 BiPBP_C: Penicillin-B 66.5 19 0.00042 19.6 6.6 45 7-54 9-55 (89)
377 PF02480 Herpes_gE: Alphaherpe 64.2 2.2 4.8E-05 31.0 0.0 37 105-141 88-124 (439)
378 PF11049 KSHV_K1: Glycoprotein 63.9 19 0.00042 18.7 3.6 44 30-88 2-45 (71)
379 cd05767 IgC_MHC_II_alpha Class 63.5 24 0.00052 19.6 6.7 51 79-129 17-84 (94)
380 PF15096 G6B: G6B family 62.6 15 0.00032 23.5 3.3 15 74-88 81-95 (224)
381 cd05890 Ig2_Nectin-1_like Seco 58.8 32 0.00069 19.5 5.8 18 30-47 24-42 (98)
382 PHA03273 envelope glycoprotein 58.2 75 0.0016 23.6 6.8 34 20-54 244-280 (486)
383 KOG3611|consensus 51.5 25 0.00054 27.7 3.6 61 28-89 571-634 (737)
384 PHA03281 envelope glycoprotein 49.9 60 0.0013 24.7 5.1 39 104-142 296-334 (642)
385 PHA03286 envelope glycoprotein 46.0 72 0.0016 23.6 4.9 31 107-138 308-338 (492)
386 PHA02935 Hypothetical protein; 43.1 41 0.00089 21.9 3.1 18 69-86 104-121 (349)
387 PF03921 ICAM_N: Intercellular 40.6 67 0.0015 17.9 7.7 30 17-47 9-39 (91)
388 PF01688 Herpes_gI: Alphaherpe 35.8 1.1E+02 0.0025 19.1 4.8 25 105-129 123-147 (161)
389 PHA03282 envelope glycoprotein 35.5 1.1E+02 0.0024 22.9 4.5 32 106-138 333-364 (540)
390 PF10572 UPF0556: Uncharacteri 34.9 1.2E+02 0.0025 19.0 6.8 12 117-128 71-82 (158)
391 PF12988 DUF3872: Domain of un 30.7 92 0.002 18.9 3.1 30 22-51 43-77 (137)
392 PF11327 DUF3129: Protein of u 28.4 1.3E+02 0.0027 19.3 3.6 26 68-93 94-119 (184)
393 PF02480 Herpes_gE: Alphaherpe 27.9 83 0.0018 23.3 3.1 35 104-139 267-301 (439)
394 COG5475 Uncharacterized small 26.9 96 0.0021 15.6 2.3 13 119-131 29-41 (60)
395 PF11781 RRN7: RNA polymerase 23.5 43 0.00094 15.0 0.7 10 115-124 20-29 (36)
396 KOG3743|consensus 22.3 1.1E+02 0.0024 23.3 2.8 29 19-47 376-404 (622)
397 PRK15372 pathogenicity island 22.3 66 0.0014 21.8 1.6 12 112-123 79-90 (292)
398 PHA03290 envelope glycoprotein 22.2 1.4E+02 0.003 21.3 3.1 25 104-128 127-151 (357)
399 PHA03283 envelope glycoprotein 20.7 3.2E+02 0.0069 21.0 4.8 33 105-138 314-346 (542)
400 PHA03292 envelope glycoprotein 20.2 3.5E+02 0.0077 19.8 4.7 26 104-129 126-151 (413)
No 1
>KOG3513|consensus
Probab=99.91 E-value=3.7e-23 Score=152.25 Aligned_cols=134 Identities=26% Similarity=0.491 Sum_probs=112.6
Q ss_pred cccCCCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEE
Q psy15390 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYL 83 (142)
Q Consensus 4 ~~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~ 83 (142)
.+..+|++.. .++...+..|++++|.|.+.|.|.|.+.|++ +|.++....+..-.....+.|+|.+++..|+|+|+
T Consensus 327 ~v~a~P~w~~---~~~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQ 402 (1051)
T KOG3513|consen 327 TVYAPPYWLQ---KPQDTEADTGSNVTLECKASGKPNPTVKWLK-NGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQ 402 (1051)
T ss_pred EEecCchhhc---ccceeEecCCCCeEEEEEecCCCCCceEEee-CCeecCccCCCcceEEeCCEEEEEecccccCeEEE
Confidence 4567899998 8999999999999999999999999999999 99888754432223445678999999999999999
Q ss_pred EEEEec---------------------------------------------CCccEEEEE---------EEeccccceEE
Q psy15390 84 CIATKI---------------------------------------------GPLKIFWEI---------IFHMHYGEQLN 109 (142)
Q Consensus 84 C~~~~~---------------------------------------------~~~~~~w~~---------~~~~~~~~~l~ 109 (142)
|.+.|. +.+.++|.+ ++.+..+++|.
T Consensus 403 C~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~ 482 (1051)
T KOG3513|consen 403 CIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLE 482 (1051)
T ss_pred eeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEE
Confidence 999986 446788964 34455688999
Q ss_pred EccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 110 ITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 110 i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
|.+++.+|+|.|+|.|.|..|. +.....|.|+
T Consensus 483 I~n~t~~DaG~YtC~A~N~~G~-a~~~~~L~Vk 514 (1051)
T KOG3513|consen 483 ISNVTRSDAGKYTCVAENKLGK-AESTGNLIVK 514 (1051)
T ss_pred ecccCcccCcEEEEEEEcccCc-cceEEEEEEe
Confidence 9999999999999999999996 6777888775
No 2
>KOG3513|consensus
Probab=99.85 E-value=3.2e-20 Score=137.02 Aligned_cols=131 Identities=27% Similarity=0.477 Sum_probs=105.7
Q ss_pred cCCCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEE
Q psy15390 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCI 85 (142)
Q Consensus 6 ~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~ 85 (142)
..+|.+..+ .++.....+|+.|.|.|.+.|.|.|++.|.+.+|..+. +.......+..|.|.+++.+|+|.|.|.
T Consensus 238 ~~~P~i~~~--~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~---~r~~~~~~~~vL~I~nv~~~D~G~Y~C~ 312 (1051)
T KOG3513|consen 238 EYAPKILVP--FPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPP---RRATYSNYGKVLKIPNVQYEDAGEYECI 312 (1051)
T ss_pred ccCCccccC--CCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCC---cceeeeccccEEEecccCcCCCeEEEEE
Confidence 457887764 45577888999999999999999999999996665432 2222355667899999999999999999
Q ss_pred EEec------------------------------------------CCccEEEEEEE-----------eccccceEEEcc
Q psy15390 86 ATKI------------------------------------------GPLKIFWEIIF-----------HMHYGEQLNITK 112 (142)
Q Consensus 86 ~~~~------------------------------------------~~~~~~w~~~~-----------~~~~~~~l~i~~ 112 (142)
+.|. +.+.+.|.++. .....+.|.|++
T Consensus 313 AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~ 392 (1051)
T KOG3513|consen 313 AENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISN 392 (1051)
T ss_pred EecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEe
Confidence 9986 44788897653 333467899999
Q ss_pred CCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 113 ISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 113 ~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
++.+|+|.|.|.|+|..|. +...+.|.|.
T Consensus 393 v~~~dsg~YQC~A~Nk~G~-i~anA~L~V~ 421 (1051)
T KOG3513|consen 393 VQESDSGVYQCIAENKYGT-IYANAELKVL 421 (1051)
T ss_pred cccccCeEEEeeeecccce-EeeeeEEEEE
Confidence 9999999999999999996 7778888773
No 3
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.77 E-value=1.6e-17 Score=94.12 Aligned_cols=90 Identities=21% Similarity=0.361 Sum_probs=67.6
Q ss_pred CeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 9 PNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 9 p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
|.|.. .++.+.+..|+.+.|.|.+.|.|.+.+.|++ +++.+....+.++...
T Consensus 1 p~~~~---~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~~~~~~~~------------------------ 52 (98)
T cd05762 1 PQIIQ---FPEDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGEGIKIENT------------------------ 52 (98)
T ss_pred CceEE---CCcCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCCcEEEEec------------------------
Confidence 55666 7788899999999999999999999999999 8887753321111100
Q ss_pred cCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 89 IGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 89 ~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
...+.|.|..+..+|+|.|+|.|.|..|. ....+.|.|
T Consensus 53 --------------~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~-~~~~~~l~V 90 (98)
T cd05762 53 --------------ENSSKLTITEGQQEHCGCYTLEVENKLGS-RQAQVNLTV 90 (98)
T ss_pred --------------CCeeEEEECCCChhhCEEEEEEEEcCCCc-eeEEEEEEE
Confidence 01235788888888999999999998886 566777766
No 4
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.77 E-value=1.8e-17 Score=92.18 Aligned_cols=88 Identities=28% Similarity=0.423 Sum_probs=68.0
Q ss_pred CCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEE
Q psy15390 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87 (142)
Q Consensus 8 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 87 (142)
||.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.... ++.
T Consensus 1 ~p~i~~---~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~~~~~--~~~------------------------- 49 (88)
T cd05851 1 PADINV---KFKDTYALKGQNVTLECFALGNPVPVIRWRK-ILEPMPATA--EIS------------------------- 49 (88)
T ss_pred CCceEE---ccccEEEeCCCcEEEEEEecccCCCEEEEEE-CCcCCCCCC--EEe-------------------------
Confidence 577777 7778889999999999999999999999999 665442210 000
Q ss_pred ecCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 88 KIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 88 ~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
..+..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus 50 ---------------~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V~ 88 (88)
T cd05851 50 ---------------MSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARVYVQ 88 (88)
T ss_pred ---------------cCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEEEEC
Confidence 01235888889999999999999999996 6777888875
No 5
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.72 E-value=2.4e-16 Score=101.54 Aligned_cols=122 Identities=17% Similarity=0.308 Sum_probs=84.3
Q ss_pred ceeEEecCCcEEEEEEEecC-----------CCCeeEEEecCCcce--ec-CCc---c----eEEeeccceEEEeecCCC
Q psy15390 19 SSVAVREEFNITLTCKAEGF-----------PAPEIKWRREDNQPI--SI-NKR---K----KVHMHYGEQLNITKISRT 77 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~~~-----------~~~~~~w~~~~~~~~--~~-~~~---~----~~~~~~~~~l~i~~v~~~ 77 (142)
..+.+.+|+++.|.|.+.+. ..+.+.|++ ++... .. +.+ . .....++..|.|.+++.+
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k-~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSK-TDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEe-CCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 46788999999999997653 345899999 55432 11 111 0 000123568999999999
Q ss_pred CCeEEEEEEEec-----------------------------------------CCccEEEEEEEec----------cccc
Q psy15390 78 EMGAYLCIATKI-----------------------------------------GPLKIFWEIIFHM----------HYGE 106 (142)
Q Consensus 78 d~G~y~C~~~~~-----------------------------------------~~~~~~w~~~~~~----------~~~~ 106 (142)
|+|.|.|++.|. +.+.++|.+.... ...+
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~ 188 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNS 188 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCC
Confidence 999999999875 1367899763221 1245
Q ss_pred eEEEccCCCCCCeEEEEEEecCC-CC--CeeeEEEEEE
Q psy15390 107 QLNITKISRTEMGAYLCIATNNV-PP--SVSKRITVDV 141 (142)
Q Consensus 107 ~l~i~~~~~~d~g~y~C~a~n~~-~~--~~s~~~~l~V 141 (142)
.|.|.+++.+|+|.|+|.|.... |. .++..+.|+|
T Consensus 189 ~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~ 226 (227)
T PHA02826 189 TLVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTI 226 (227)
T ss_pred EEEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEE
Confidence 79999999999999999998753 22 3455555543
No 6
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.72 E-value=2.9e-16 Score=88.06 Aligned_cols=90 Identities=27% Similarity=0.556 Sum_probs=64.6
Q ss_pred CCCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEE
Q psy15390 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86 (142)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~ 86 (142)
+||.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+....+..+..
T Consensus 2 ~~~~~~~---~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~----------------------- 54 (92)
T cd05747 2 LPATILT---KPRSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSSQRHQITS----------------------- 54 (92)
T ss_pred CCCcccc---cCccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCCCcEEEEE-----------------------
Confidence 5788887 7788899999999999999999999999999 776553221111100
Q ss_pred EecCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 87 TKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 87 ~~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
....+.|.|.++..+|+|.|+|.|.|..|. .+..+.|
T Consensus 55 ---------------~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 91 (92)
T cd05747 55 ---------------TEYKSTFEISKVQMSDEGNYTVVVENSEGK-QEAQFTL 91 (92)
T ss_pred ---------------cCCeeEEEECCCCcccCEeEEEEEEcCCCC-EeEEEEe
Confidence 011235777888888888888888888875 4555544
No 7
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.72 E-value=2.8e-16 Score=88.14 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=61.2
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
.|..+.+.+|+++.|.|.+.+.|.|.+.|++ ++..+....+.++....+
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~~~~~~~~~~------------------------------ 55 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSDHYNVKVEQG------------------------------ 55 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCCCEEEEEcCC------------------------------
Confidence 4567789999999999999999999999999 777654322111110000
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 56 -------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v 92 (92)
T cd05737 56 -------KYASLTIKGVSSEDSGKYGIVVKNKYGG-ETVDVTVSV 92 (92)
T ss_pred -------CEEEEEEccCChhhCEEEEEEEEECCCc-ceEEEEEeC
Confidence 0124788888888889999999988886 566666554
No 8
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.71 E-value=6.2e-16 Score=87.85 Aligned_cols=96 Identities=32% Similarity=0.623 Sum_probs=65.7
Q ss_pred CCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCC---cceEEeeccceEEEeecCCCCCeEEEE
Q psy15390 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINK---RKKVHMHYGEQLNITKISRTEMGAYLC 84 (142)
Q Consensus 8 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~l~i~~v~~~d~G~y~C 84 (142)
||.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++ +|..+.... ..+.....++.+. .
T Consensus 1 ~P~i~~---~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~------------~- 63 (100)
T cd07693 1 PPRIVE---HPSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPRSHRIVLPSGSLF------------F- 63 (100)
T ss_pred CCeEEe---cCceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECccccCCCCcceEEecCCcEE------------E-
Confidence 577877 7888899999999999999999999999999 777664311 0000000000000 0
Q ss_pred EEEecCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 85 IATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 85 ~~~~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
..+....+..+|+|.|+|.|.|..|...+..+.|.|
T Consensus 64 ---------------------~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 64 ---------------------LRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred ---------------------EEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 002222347889999999999999986777777766
No 9
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.70 E-value=8.5e-16 Score=87.30 Aligned_cols=91 Identities=22% Similarity=0.384 Sum_probs=64.2
Q ss_pred CCceeEEecCCcEEEEEEEec-CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIF 95 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~ 95 (142)
....+.+.+|+++.|.|.+.+ .|.|.+.|++ +|.++.......+ ...+ + . +
T Consensus 9 ~~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~~~~~-~~~~--------~-~--~--------------- 60 (101)
T cd04975 9 QNTTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTNKLTEIV-TSEN--------E-S--E--------------- 60 (101)
T ss_pred CCceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCCCcceeE-EEec--------c-C--c---------------
Confidence 345678899999999999999 8999999999 8987753211110 0000 0 0 0
Q ss_pred EEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 96 WEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 96 w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
....+.|.|.++..+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus 61 ------~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~-~~~t~~L~V~ 100 (101)
T cd04975 61 ------YRYVSELKLVRLKESEAGTYTFLASNSDAS-KSLTFELYVN 100 (101)
T ss_pred ------ceEEEEEEEeecCHhhCeeEEEEEECCCcc-EEEEEEEEEE
Confidence 001235888899999999999999999985 6777777663
No 10
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.70 E-value=6.8e-16 Score=86.99 Aligned_cols=89 Identities=17% Similarity=0.378 Sum_probs=61.5
Q ss_pred CCceeEEecCCcEEEEEEEecCCC-CeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPA-PEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIF 95 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~ 95 (142)
.|....+..|++++|.|.+.+.|. +.+.|+++++..+..... ++.... .+.
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~-r~~v~~-----------~~~---------------- 57 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQ-RISVVR-----------NDD---------------- 57 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCC-eEEEEe-----------CCC----------------
Confidence 455667889999999999999985 699999856665432111 111000 000
Q ss_pred EEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 96 WEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 96 w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
..+.|.|.+++.+|+|.|+|.|.|..+...+.++.|.|
T Consensus 58 --------~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 58 --------YSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred --------CceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 02358888899999999999999987445777887776
No 11
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.70 E-value=5.7e-16 Score=86.47 Aligned_cols=90 Identities=26% Similarity=0.607 Sum_probs=65.3
Q ss_pred CeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 9 PNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 9 p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
|.|.. .+..+.+.+|+++.|.|.+.+.|.+.+.|++ ++..+....+..+....
T Consensus 1 P~~~~---~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~~~~~~~~----------------------- 53 (90)
T PF07679_consen 1 PVFTK---KPKDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQRYQIESDG----------------------- 53 (90)
T ss_dssp EEEEE---ESSEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSSEEEEEET-----------------------
T ss_pred CEEEE---ecCCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeeeeeeeccc-----------------------
Confidence 56666 6788999999999999999999999999999 78877654333322221
Q ss_pred cCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 89 IGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 89 ~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 54 ---------------~~~~L~I~~v~~~D~G~Y~C~~~n~~g~-~~~~~~l~V 90 (90)
T PF07679_consen 54 ---------------GSSSLTIKNVTREDAGTYTCVASNSSGE-ATASVNLTV 90 (90)
T ss_dssp ---------------TEEEEEESSESGGGSEEEEEEEEETTEE-EEEEEEEEE
T ss_pred ---------------ceeEEccCCCChhhCEEEEEEEEECCCE-EEEEEEEEC
Confidence 1334777777777777788888777664 566666654
No 12
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.70 E-value=1.7e-15 Score=84.31 Aligned_cols=88 Identities=28% Similarity=0.441 Sum_probs=65.4
Q ss_pred CCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEE
Q psy15390 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87 (142)
Q Consensus 8 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 87 (142)
||.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.... .. .
T Consensus 1 p~~~~~---~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k-~~~~~~~~~--~~-~------------------------ 49 (88)
T cd04968 1 PSIIVV---FPKDTYALKGQNVTLECFALGNPVPQIKWRK-VDGSMPSSA--EI-S------------------------ 49 (88)
T ss_pred CCcEEE---CCCceEEeCCCcEEEEEEeeEeCCCEEEEEE-CCCcCCCcc--EE-E------------------------
Confidence 344555 6777888999999999999999999999999 554332110 00 0
Q ss_pred ecCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 88 KIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 88 ~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
...+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus 50 ---------------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 88 (88)
T cd04968 50 ---------------MSGAVLKIPNIQFEDEGTYECEAENIKGK-DTHQGRIYVQ 88 (88)
T ss_pred ---------------EeCCEEEECCCCcccCEEEEEEEEECCCc-EEEEEEEEEC
Confidence 01345888899999999999999999986 6777887774
No 13
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.69 E-value=1.6e-15 Score=86.07 Aligned_cols=97 Identities=29% Similarity=0.482 Sum_probs=65.7
Q ss_pred CCCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecC-CcceecCCcceEEeeccceEEEeecCCCCCeEEEEE
Q psy15390 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRED-NQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCI 85 (142)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~ 85 (142)
++|++.. +.+..+.+|++++|.|.+.+.|.|.+.|++.+ +..+.... ....+.|...
T Consensus 1 ~~p~i~~----~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~------------------~~~~~r~~v~ 58 (98)
T cd05870 1 VQPHIIQ----LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD------------------KSPDGRIEVK 58 (98)
T ss_pred CCCEEEe----eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC------------------cCcCceEEEe
Confidence 5788764 55778899999999999999999999999832 22111000 0000111100
Q ss_pred EEecCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 86 ATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 86 ~~~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.......|.|.+++.+|+|.|+|.|.|..|. .+..+.|+|
T Consensus 59 ---------------~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~ 98 (98)
T cd05870 59 ---------------GQHGESSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDI 98 (98)
T ss_pred ---------------ecCCeeEEEEeeCCcCCCEEEEEEEeccCCc-ceeEEEEeC
Confidence 0011235899999999999999999999996 677777765
No 14
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.69 E-value=1.8e-15 Score=85.35 Aligned_cols=83 Identities=27% Similarity=0.597 Sum_probs=60.0
Q ss_pred CceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEE
Q psy15390 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWE 97 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~ 97 (142)
.....+..|+.+.|.|.+.|.|.+.+.|++ ++..+.... .+....
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~-~~~~~~--------------------------------- 54 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESGE-EKYSFN--------------------------------- 54 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCCC-CEEEEe---------------------------------
Confidence 345678899999999999999999999999 777653220 010000
Q ss_pred EEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 98 IIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 98 ~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
...+.|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 55 -----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V 92 (95)
T cd05730 55 -----EDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIHLKV 92 (95)
T ss_pred -----CCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence 01235888888999999999999999986 566666655
No 15
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.69 E-value=2.1e-15 Score=83.42 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=61.5
Q ss_pred ceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEE
Q psy15390 19 SSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEI 98 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~ 98 (142)
..+.+.+|+.+.|.|.+.|.|.|.+.|++ +++.+.... .+ +.+..
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~~~-~r--------~~~~~------------------------- 47 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTETE-GR--------VRVES------------------------- 47 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECccCC-Ce--------EEEEE-------------------------
Confidence 35678899999999999999999999999 777664321 01 11100
Q ss_pred EEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 99 IFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 99 ~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
......|.|..+..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 48 ---~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~~l~V 86 (86)
T cd05894 48 ---YKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHASLFVKV 86 (86)
T ss_pred ---cCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEEEEEEC
Confidence 001235888899999999999999999986 677777765
No 16
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.68 E-value=2.6e-15 Score=84.98 Aligned_cols=97 Identities=30% Similarity=0.502 Sum_probs=65.8
Q ss_pred CCCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEE
Q psy15390 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86 (142)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~ 86 (142)
++|.|.. .+....+..|+.++|.|.+.|.|.|.+.|++ +++.+..... . ..+...+..
T Consensus 1 ~~p~i~~---~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~~----~-~~~~~~v~~------------- 58 (97)
T cd05869 1 AKPKITY---VENQTAMELEEQITLTCEASGDPIPSITWRT-STRNISSEEK----T-LDGHIVVRS------------- 58 (97)
T ss_pred CCceEEE---ccCceEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccccCCcc----c-cCccEEEEc-------------
Confidence 4677766 4555556668999999999999999999999 6665432110 0 000011000
Q ss_pred EecCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 87 TKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 87 ~~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
....+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 59 ---------------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v 97 (97)
T cd05869 59 ---------------HARVSSLTLKYIQYTDAGEYLCTASNTIGQ-DSQSMYLEV 97 (97)
T ss_pred ---------------CccEEEEEEecCccCcCEEEEEEEecCCCC-eeEEEEEEC
Confidence 001235889999999999999999999997 577777765
No 17
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.68 E-value=1.7e-15 Score=84.62 Aligned_cols=83 Identities=24% Similarity=0.450 Sum_probs=63.1
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
.+.+..+.+|++++|.|.+.+. .+.+.|++ ++..+.... ....
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l~~~~---~~~~-------------------------------- 51 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLLVPPR---LQLS-------------------------------- 51 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEE-CCEECCCCC---EEEe--------------------------------
Confidence 4556789999999999999999 88999999 776543211 0000
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.....|.|.+++.+|+|.|.|.|.|..|...+..+.|.|.
T Consensus 52 ------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V~ 91 (91)
T cd05740 52 ------NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNVN 91 (91)
T ss_pred ------CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEeC
Confidence 1123588888999999999999999999877888888874
No 18
>KOG4194|consensus
Probab=99.68 E-value=9.9e-16 Score=108.08 Aligned_cols=131 Identities=27% Similarity=0.443 Sum_probs=97.4
Q ss_pred cCCCeeeecCCCCceeEEecCCcEEEEEEEecC--CCCeeEEEecCCcceecCCcc---eE-Ee----------eccceE
Q psy15390 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGF--PAPEIKWRREDNQPISINKRK---KV-HM----------HYGEQL 69 (142)
Q Consensus 6 ~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~~~w~~~~~~~~~~~~~~---~~-~~----------~~~~~l 69 (142)
..+|++.. .|..+.+..|++++|+|.+.+. .+..+.|.+ +.+........ ++ .. ...+.|
T Consensus 501 spkpqI~~---qPe~~~al~g~nirftC~a~sssasplsi~WR~-dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L 576 (873)
T KOG4194|consen 501 SPKPQIVT---QPETVSALIGENIRFTCNAYSSSASPLSIEWRK-DNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAIL 576 (873)
T ss_pred CCCcceec---CchHhhhhhccceEEEEEeccCCCCCceeEeee-ccccCcccchhcchhhhhhhccCccchhhhhhhee
Confidence 35677776 7777788889999999999773 334788988 65533211110 00 01 112359
Q ss_pred EEeecCCCCCeEEEEEEEec-------------------------------------------CCccEEEEE--------
Q psy15390 70 NITKISRTEMGAYLCIATKI-------------------------------------------GPLKIFWEI-------- 98 (142)
Q Consensus 70 ~i~~v~~~d~G~y~C~~~~~-------------------------------------------~~~~~~w~~-------- 98 (142)
++.||...|.|.|+|.+.|. |.|+|.|.+
T Consensus 577 ~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA 656 (873)
T KOG4194|consen 577 HLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA 656 (873)
T ss_pred eeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCch
Confidence 99999999999999999875 557999964
Q ss_pred -----EEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 99 -----IFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 99 -----~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
......+..+.|.+++.+|+|.|+|.|.|..|. .+..++|.|
T Consensus 657 A~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V 703 (873)
T KOG4194|consen 657 ARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTV 703 (873)
T ss_pred hhhheeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEE
Confidence 234556778999999999999999999999996 777777776
No 19
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.68 E-value=4.7e-16 Score=83.78 Aligned_cols=74 Identities=26% Similarity=0.559 Sum_probs=54.3
Q ss_pred cCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccc
Q psy15390 25 EEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHY 104 (142)
Q Consensus 25 ~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~ 104 (142)
+|+++.|.|.+.+.|.|.+.|++ ++..+....+. ....
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k-~g~~~~~~~~~--~~~~--------------------------------------- 38 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTK-GGSQLSVDRRH--LVLS--------------------------------------- 38 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEE-CCEECCCCCCe--EEcc---------------------------------------
Confidence 58999999999999999999999 77765332110 0111
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 39 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V 74 (74)
T cd05745 39 SGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQLTV 74 (74)
T ss_pred CCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEEeC
Confidence 234777888888888888888888886 666777665
No 20
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.67 E-value=2.9e-15 Score=84.47 Aligned_cols=90 Identities=27% Similarity=0.499 Sum_probs=61.0
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
.|....+.+|+++.|.|.+.+.|.+.+.|++ +|..+......+.....++.+.|.++
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~l~i~~v---------------------- 61 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNLVSDERRQQLPNGSLLITSV---------------------- 61 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEE-CCeECccccCcceEEccCCeEEEeee----------------------
Confidence 5667788899999999999999999999999 88776433221111111122221111
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecC-CCCCeeeEEEEEE
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNN-VPPSVSKRITVDV 141 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~-~~~~~s~~~~l~V 141 (142)
........|.|.|+|.|.|. .|...+..+.|.|
T Consensus 62 ------------~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 62 ------------VHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred ------------eccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 11112678999999999999 8886688887765
No 21
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.67 E-value=2.1e-15 Score=84.25 Aligned_cols=86 Identities=22% Similarity=0.358 Sum_probs=59.0
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
.+....+.+|+++.|.|.+.|.|. .+.|++.++..+....+ +....++
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r--~~~~~~g----------------------------- 53 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQR--VVVQKEG----------------------------- 53 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCC--EEEEeCC-----------------------------
Confidence 456778999999999999999887 89999855654432211 1111110
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
....|.|..+..+|+|.|+|.|.|..|......+.|.|
T Consensus 54 -------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 54 -------VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred -------CeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 01247788888888888888888888775566666654
No 22
>KOG4221|consensus
Probab=99.67 E-value=4.3e-15 Score=110.99 Aligned_cols=109 Identities=24% Similarity=0.475 Sum_probs=91.1
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEec-------
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI------- 89 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~------- 89 (142)
.+.+..+..|+++.|.|.+.+.+.+.+.|.+ +.+++..+. ++....++.|.|.+++..|.|.|+|.+.+.
T Consensus 146 ~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~k-n~~pl~~~~--r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~ 222 (1381)
T KOG4221|consen 146 QPESTTLLYGQTALFSCEVNAEPVPTIMWLK-NDQPLPLDS--RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSN 222 (1381)
T ss_pred CccceeEecCCcEEEEEEEcCccCceeEEec-ccccccCCC--cEEEcCCCcEEecccccCCCceEEEEEecCCcCCccc
Confidence 5667789999999999999998888999999 777776655 555677889999999999999999999865
Q ss_pred ------------------------------------------CCccEEEEEE----------EeccccceEEEccCCCCC
Q psy15390 90 ------------------------------------------GPLKIFWEII----------FHMHYGEQLNITKISRTE 117 (142)
Q Consensus 90 ------------------------------------------~~~~~~w~~~----------~~~~~~~~l~i~~~~~~d 117 (142)
+.+.+.|.++ +.....+.|.|.+++..|
T Consensus 223 ~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~d 302 (1381)
T KOG4221|consen 223 EAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDD 302 (1381)
T ss_pred eeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEecccccc
Confidence 4478999642 233446789999999999
Q ss_pred CeEEEEEEecC
Q psy15390 118 MGAYLCIATNN 128 (142)
Q Consensus 118 ~g~y~C~a~n~ 128 (142)
+|.|+|+|.|.
T Consensus 303 Sg~YtC~Atn~ 313 (1381)
T KOG4221|consen 303 SGKYTCRATNT 313 (1381)
T ss_pred CceEEEEecCC
Confidence 99999999984
No 23
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.67 E-value=1.9e-15 Score=83.52 Aligned_cols=81 Identities=26% Similarity=0.516 Sum_probs=60.9
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
.|....+..|+.+.|.|.+.+.|.|.+.|++ ++..+.... ++.. .
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~~~--~~~~-~------------------------------- 49 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLASEN--RIEV-E------------------------------- 49 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCCCC--eEEE-e-------------------------------
Confidence 5677889999999999999999999999999 777553211 1000 0
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.+.|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 50 --------~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 85 (85)
T cd05728 50 --------AGDLRITKLSLSDSGMYQCVAENKHGT-IYASAELAV 85 (85)
T ss_pred --------CCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEEEC
Confidence 224777788888888999999988886 677777665
No 24
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.66 E-value=5.1e-15 Score=83.64 Aligned_cols=96 Identities=29% Similarity=0.461 Sum_probs=66.0
Q ss_pred CCCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEE
Q psy15390 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86 (142)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~ 86 (142)
++|.+.. +.+..+.+|+++.|.|.+.+.|.+.+.|++ ++..+..... ...+.+.+.
T Consensus 1 ~~P~i~~----~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~~~~~~-----~~~~~~~~~-------------- 56 (96)
T cd05732 1 VQPKITY----LENQTAVELEQITLTCEAEGDPIPEITWRR-ATRNFSEGDK-----SLDGRIVVR-------------- 56 (96)
T ss_pred CCcccee----cCceeEecCCcEEEEEEEeEcCCCcEEEEE-CCcccCCCCc-----cccceEEEe--------------
Confidence 3577653 446778899999999999999999999999 6644322110 000001110
Q ss_pred EecCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 87 TKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 87 ~~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.......|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 57 --------------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~s~~l~v 96 (96)
T cd05732 57 --------------GHARVSSLTLKDVQLTDAGRYDCEASNRIGG-DQQSMYLEV 96 (96)
T ss_pred --------------CCccEEEEEECcCCcCcCEEeEEEEEeCCCC-cEEEEEEeC
Confidence 0001235899999999999999999999997 577777765
No 25
>KOG4194|consensus
Probab=99.66 E-value=1.7e-15 Score=106.96 Aligned_cols=124 Identities=22% Similarity=0.449 Sum_probs=97.6
Q ss_pred cccCCCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcc-eecCCcceEEee-ccceEEEeecCCCCCeE
Q psy15390 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQP-ISINKRKKVHMH-YGEQLNITKISRTEMGA 81 (142)
Q Consensus 4 ~~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~-~~~~l~i~~v~~~d~G~ 81 (142)
.|...|.|.. +|..+++..|+...|.|.+.|.|.|++.|.+ +|.. .+.....|.... .+..+.|.||+.+|.|.
T Consensus 608 tV~~~PsFtk---tP~dltl~tg~mArl~CaAtG~P~PeIawqk-dggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~Gi 683 (873)
T KOG4194|consen 608 TVNQAPSFTK---TPEDLTLRTGQMARLECAATGHPRPEIAWQK-DGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGI 683 (873)
T ss_pred EeeccCcccc---CcccceeecccceeeeeeccCCCCcceeehh-cCCCCCchhhhheeeecCCCCEEEEecccccccce
Confidence 5667899998 8999999999999999999999999999999 5555 555544554444 34579999999999999
Q ss_pred EEEEEEec-------------------------------------------CCccEEEEEE-----E----e-ccccceE
Q psy15390 82 YLCIATKI-------------------------------------------GPLKIFWEII-----F----H-MHYGEQL 108 (142)
Q Consensus 82 y~C~~~~~-------------------------------------------~~~~~~w~~~-----~----~-~~~~~~l 108 (142)
|+|.++|. +.+...|.+. + . ...+.-+
T Consensus 684 YtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQll 763 (873)
T KOG4194|consen 684 YTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLL 763 (873)
T ss_pred eEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEE
Confidence 99999976 1156777531 1 1 1234556
Q ss_pred EEccCCCCCCeEEEEEEecCCCC
Q psy15390 109 NITKISRTEMGAYLCIATNNVPP 131 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~ 131 (142)
.+.....+|+|.|+|...|..|.
T Consensus 764 vv~~~~~~daG~yTcem~~~~~~ 786 (873)
T KOG4194|consen 764 VVKENLVEDAGIYTCEMSNTLGT 786 (873)
T ss_pred EEEehhhhhcceEEEEEEeeccc
Confidence 77888899999999999998775
No 26
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.66 E-value=3.6e-15 Score=80.70 Aligned_cols=74 Identities=26% Similarity=0.470 Sum_probs=55.1
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcc-eEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRK-KVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHY 104 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~ 104 (142)
|+++.|.|.+.+.|.|.+.|++ +|..+...... +.. ..
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~~~~~~~~~~----------------------------------------~~ 39 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSI-NGAPIEGTDPDPRRH----------------------------------------VS 39 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEE-CCEECCCCCCCceEE----------------------------------------ee
Confidence 7899999999999999999999 88765432110 100 01
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.+.|.|.+++.+|+|.|+|.|.|..|. +...+.|.|
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 75 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV 75 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence 335888888889999999999998886 667777766
No 27
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.66 E-value=5.1e-15 Score=83.26 Aligned_cols=87 Identities=25% Similarity=0.527 Sum_probs=57.4
Q ss_pred CeeeecCCCCceeEEe---cCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEE
Q psy15390 9 PNILDTESTPSSVAVR---EEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCI 85 (142)
Q Consensus 9 p~~~~~~~~~~~~~~~---~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~ 85 (142)
|.|.. .+..+.+. +|+.+.|.|.+.|.|.|.+.|++ ++..+......+... .
T Consensus 2 P~f~~---~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~~~~~~~~~-~-------------------- 56 (94)
T cd05848 2 PVFVQ---EPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLR-NGTEIDTESDYRYSL-I-------------------- 56 (94)
T ss_pred CeeEE---CCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEE-CCeECccCCCceEEe-e--------------------
Confidence 56666 56555443 47899999999999999999999 777664321111110 1
Q ss_pred EEecCCccEEEEEEEeccccceEEEccCC-CCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 86 ATKIGPLKIFWEIIFHMHYGEQLNITKIS-RTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 86 ~~~~~~~~~~w~~~~~~~~~~~l~i~~~~-~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
++.|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus 57 -------------------~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 57 -------------------DGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred -------------------CCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 2246666654 5788888888888888654555544
No 28
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.65 E-value=6.5e-15 Score=82.54 Aligned_cols=87 Identities=17% Similarity=0.336 Sum_probs=59.5
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
.|....+..|+++.|.|.+.+.|. .+.|+++++..+....+.... . .
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~-~-~------------------------------ 52 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVV-Q-N------------------------------ 52 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEE-e-C------------------------------
Confidence 456678999999999999999864 899998566544321111100 0 0
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
......|.|.+++.+|+|.|+|.|.|..|.....++.|.|
T Consensus 53 -----~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 53 -----DDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred -----CCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 0012358888888889999999999887665677777664
No 29
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.65 E-value=3e-15 Score=80.63 Aligned_cols=75 Identities=24% Similarity=0.507 Sum_probs=53.0
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
|.|.|.+.|.|.|.+.|++ +++.+..... ++....+ +.| ...|
T Consensus 1 v~l~C~v~G~P~P~i~W~k-~~~~i~~~~~-r~~~~~~-----------~~g------------------------~~~L 43 (75)
T cd05892 1 VKLECQISAIPPPKIFWKR-NNEMVQYNTD-RISLYQD-----------NSG------------------------RVTL 43 (75)
T ss_pred CEEEEEEEecCCCeEEEEE-CCEECcCCCC-eEEEEEc-----------CCC------------------------cEEE
Confidence 5799999999999999999 8876643211 1111100 001 1148
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 44 ~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L~V 75 (75)
T cd05892 44 LIKNVNKKDAGWYTVSAVNEAGV-ATCHARLDV 75 (75)
T ss_pred EECCCChhhCEEEEEEEEcCcCe-EEEEEEEeC
Confidence 88899999999999999999986 677777765
No 30
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.65 E-value=7.3e-15 Score=82.04 Aligned_cols=85 Identities=22% Similarity=0.336 Sum_probs=60.7
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
.++...+.+|+.+.|.|.+.|.|.|.+.|++ ++..+........
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~-~g~~~~~~~~~~~----------------------------------- 49 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWII-AGLIVIQTRTDTL----------------------------------- 49 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEE-CCEEccCCccEEE-----------------------------------
Confidence 4455668899999999999999999999999 7765432110000
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
........|.|..+..+|.|.|+|.|.|..|. .+..+.|.|
T Consensus 50 ---~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~~~L~v 90 (90)
T cd04972 50 ---ETTVDIYNLQLSNITSETQTTVTCTAENPVGQ-ANVSVQVTV 90 (90)
T ss_pred ---EecCCEEEEEEecCCcccCEEEEEEEECCCCc-eeEEEEEeC
Confidence 00011235788888888889999999998886 677777764
No 31
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.65 E-value=1.7e-15 Score=81.28 Aligned_cols=73 Identities=22% Similarity=0.481 Sum_probs=53.2
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|+.+.|.|.+.+.|.|.+.|++ ++..+.... ++.... .
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k-~~~~l~~~~--r~~~~~---------------------------------------~ 38 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSK-GTELLVNNS--RISIWD---------------------------------------D 38 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEe-CCEecccCC--CEEEcC---------------------------------------C
Confidence 6889999999999999999999 776543221 111111 2
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus 39 g~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~ 73 (73)
T cd05852 39 GSLEILNITKLDEGSYTCFAENNRGK-ANSTGVLSV 73 (73)
T ss_pred CEEEECcCChhHCEEEEEEEECCCCc-eeEEEEEEC
Confidence 35888888888888888999988886 566676654
No 32
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.65 E-value=8.9e-15 Score=81.97 Aligned_cols=86 Identities=26% Similarity=0.420 Sum_probs=61.4
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
.|..+.+.+|+++.|.|.+.+.|.+.+.|++ ++..+..... |....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k-~~~~~~~~~~-----------------------~~~~~---------- 52 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFK-NDQDIELSEH-----------------------YSVKL---------- 52 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEE-CCEECCCCCC-----------------------EEEEE----------
Confidence 5667889999999999999999999999999 6654432111 00000
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.......|.|..+..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 53 ----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~v~~ 92 (92)
T cd05891 53 ----EQGKYASLTIKGVTSEDSGKYSINVKNKYGG-ETVDVTVSV 92 (92)
T ss_pred ----cCCCEEEEEECCCChhhCEEEEEEEEeCCCc-eeeEEEEEC
Confidence 0000124888899999999999999999886 567676654
No 33
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.65 E-value=3.9e-15 Score=80.55 Aligned_cols=75 Identities=27% Similarity=0.450 Sum_probs=55.5
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|+.+.|.|.+.|.|.|.+.|++ +|+.+........... ..
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k-~g~~i~~~~~~~~~~~---------------------------------------~~ 40 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLT-NGVPIEIAPTDPSRKV---------------------------------------DG 40 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEE-CCEEccccCCCceEEe---------------------------------------cC
Confidence 7889999999999999999999 8876632211100000 12
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+.|.|..++..|+|.|+|.|.|..|. +...+.|.|
T Consensus 41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v 75 (76)
T cd05868 41 DTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNV 75 (76)
T ss_pred CEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence 24777788889999999999999986 777787776
No 34
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.65 E-value=6e-15 Score=83.91 Aligned_cols=88 Identities=17% Similarity=0.312 Sum_probs=62.4
Q ss_pred eeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEE
Q psy15390 20 SVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEII 99 (142)
Q Consensus 20 ~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~ 99 (142)
...+..|+.+.|.|.+.|.|.|.+.|++ +|+++......... .. .++ + .+.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~~~~~~~--~~-----~~~---~--~~~---------------- 62 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIENLTEITT--SE-----HNV---Q--ETR---------------- 62 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCCcceEEe--cc-----ccc---c--cee----------------
Confidence 5578889999999999999999999999 88887543211100 00 000 0 000
Q ss_pred EeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 100 FHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 100 ~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
..+.|.|.++..+|+|.|+|.|.|..|. .+.++.|.|
T Consensus 63 ----~~s~L~I~~v~~~D~G~Ytc~A~N~~g~-~~~t~~l~V 99 (101)
T cd05859 63 ----YVSKLKLIRAKEEDSGLYTALAQNEDAV-KSYTFALQI 99 (101)
T ss_pred ----eccEEEEeeCCHHHCEEEEEEEEcCCce-EEEEEEEEE
Confidence 1235889999999999999999999886 666776666
No 35
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.64 E-value=1.4e-14 Score=81.48 Aligned_cols=88 Identities=24% Similarity=0.470 Sum_probs=59.5
Q ss_pred CeeeecCCCCceeEEecC---CcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEE
Q psy15390 9 PNILDTESTPSSVAVREE---FNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCI 85 (142)
Q Consensus 9 p~~~~~~~~~~~~~~~~g---~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~ 85 (142)
|.|.. .|....+.+| +++.|.|.+.+.|.+.+.|++ +|..+......+... .
T Consensus 2 P~f~~---~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~-~g~~l~~~~~~~~~~-~-------------------- 56 (94)
T cd05850 2 PVFEE---QPSSLLFPEGSPEEKVTLGCRARASPPATYRWKM-NGTEIKFAPESRYTL-V-------------------- 56 (94)
T ss_pred CeeEE---CCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEE-CCEECccCCCceEEE-E--------------------
Confidence 55655 5666665555 589999999999999999999 887664321111111 0
Q ss_pred EEecCCccEEEEEEEeccccceEEEccCC-CCCCeEEEEEEecCCCCCeeeEEEEE
Q psy15390 86 ATKIGPLKIFWEIIFHMHYGEQLNITKIS-RTEMGAYLCIATNNVPPSVSKRITVD 140 (142)
Q Consensus 86 ~~~~~~~~~~w~~~~~~~~~~~l~i~~~~-~~d~g~y~C~a~n~~~~~~s~~~~l~ 140 (142)
.+.|.|.++. ..|+|.|+|.|.|..|...+..+.|.
T Consensus 57 -------------------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 57 -------------------AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred -------------------CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 2246665544 47888999999988887666666553
No 36
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.64 E-value=7.4e-15 Score=99.71 Aligned_cols=105 Identities=17% Similarity=0.379 Sum_probs=76.8
Q ss_pred EEecCCcEEEEEEE-----ecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEec-------
Q psy15390 22 AVREEFNITLTCKA-----EGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI------- 89 (142)
Q Consensus 22 ~~~~g~~v~l~C~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~------- 89 (142)
.+.+|+.+.|.|.. .+.|.+.+.|++ ++.... .......+..|.|.++..+|+|.|+|.+.|.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K-~g~~~~----~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEK-RGADND----RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMS 111 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEE-CCCccc----eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEE
Confidence 45679999999996 577778999999 654321 1212223445889999999999999999875
Q ss_pred ------------------------------------------CCccEEEEEEE-------eccccceEEEccCCCCCCeE
Q psy15390 90 ------------------------------------------GPLKIFWEIIF-------HMHYGEQLNITKISRTEMGA 120 (142)
Q Consensus 90 ------------------------------------------~~~~~~w~~~~-------~~~~~~~l~i~~~~~~d~g~ 120 (142)
+++.+.|.+.. .....+.|.|.+++.+|+|.
T Consensus 112 ~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~ 191 (326)
T PHA02785 112 LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGY 191 (326)
T ss_pred EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeE
Confidence 12356774321 11224579999999999999
Q ss_pred EEEEEecCCCC
Q psy15390 121 YLCIATNNVPP 131 (142)
Q Consensus 121 y~C~a~n~~~~ 131 (142)
|+|.|.|..+.
T Consensus 192 Y~C~~~n~~g~ 202 (326)
T PHA02785 192 YTCVLKYIYGD 202 (326)
T ss_pred EEEEEEeccCC
Confidence 99999998765
No 37
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.64 E-value=4.2e-15 Score=80.05 Aligned_cols=74 Identities=28% Similarity=0.522 Sum_probs=54.6
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
++|.|.+.|.|.|.+.|++ ++..+......++... ..+.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k-~~~~~~~~~~~~~~~~---------------------------------------~~g~L 40 (74)
T cd05738 1 ATMLCAASGNPDPEITWFK-DFLPVDTTSNGRIKQL---------------------------------------RSGAL 40 (74)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECccCCCCCEEEc---------------------------------------CCcEE
Confidence 4789999999999999999 7765532111111111 12347
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.|..+..+|+|.|+|.|.|..|...+..+.|.||
T Consensus 41 ~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 41 QIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred EECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 8888889999999999999999877888888886
No 38
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.63 E-value=9.7e-15 Score=80.82 Aligned_cols=84 Identities=30% Similarity=0.577 Sum_probs=59.1
Q ss_pred CCceeEEecCCcEEEEEEE-ecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEE
Q psy15390 17 TPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIF 95 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~ 95 (142)
.|....+.+|+++.|.|.+ .+.|.+.+.|++ ++..+..... +.....
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~~~~-~~~~~~------------------------------ 49 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNLDNE-RVRIVD------------------------------ 49 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEE-CCEECCCCCC-CEEEcc------------------------------
Confidence 4567788899999999998 688888999999 7766533110 100111
Q ss_pred EEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 96 WEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 96 w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.+.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 50 ---------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 50 ---------DGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred ---------CCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 2347777888888888888888888775566666654
No 39
>KOG4221|consensus
Probab=99.63 E-value=2.5e-15 Score=112.20 Aligned_cols=120 Identities=28% Similarity=0.524 Sum_probs=97.4
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEec-------
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI------- 89 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~------- 89 (142)
.+....+.+|+++.|.|.+.+.|.|.|.|.+ ++..+..+. .++.....+.|.|.+++..|+|.|+|.+.|.
T Consensus 243 ~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~i~~ds-~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idas 320 (1381)
T KOG4221|consen 243 EPSNAVVVEGDDVVLECVVSGVPKPSVKWLR-NGEKISVDS-YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDAS 320 (1381)
T ss_pred CCCccccccCCcEEEEEEecCCCCCceEEee-CCeeeeecc-eEEEEecccceEEeccccccCceEEEEecCCCcccccc
Confidence 6778889999999999999999999999999 998887665 5555666778999999999999999999973
Q ss_pred -----------------------------------CCccEEEEEE---------EeccccceEEEccCCCCCCeEEEEEE
Q psy15390 90 -----------------------------------GPLKIFWEII---------FHMHYGEQLNITKISRTEMGAYLCIA 125 (142)
Q Consensus 90 -----------------------------------~~~~~~w~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~a 125 (142)
+.+.+.|.++ +.+..++.+.|..+-..|.|.|.|.+
T Consensus 321 aev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcva 400 (1381)
T KOG4221|consen 321 AEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVA 400 (1381)
T ss_pred eEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhh
Confidence 2356777653 33444445888888899999999999
Q ss_pred ecCCCCCeeeEEEE
Q psy15390 126 TNNVPPSVSKRITV 139 (142)
Q Consensus 126 ~n~~~~~~s~~~~l 139 (142)
+|..|. +...+.|
T Consensus 401 en~~G~-a~a~a~l 413 (1381)
T KOG4221|consen 401 ENDAGS-AQAAAQL 413 (1381)
T ss_pred ccCccc-ccchhhh
Confidence 999987 4544444
No 40
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.62 E-value=6.1e-15 Score=79.46 Aligned_cols=75 Identities=31% Similarity=0.548 Sum_probs=52.9
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
|+|.|.+.|.|.|.+.|++ ++..+.... .++....+ +.| ...|
T Consensus 1 v~l~C~v~G~P~P~v~W~k-~~~~l~~~~-~~~~~~~~-----------~~~------------------------~~~L 43 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKK-ENESLTHNT-DRVSMHQD-----------NCG------------------------YICL 43 (75)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECCCCC-CeEEEEEc-----------CCC------------------------EEEE
Confidence 5799999999999999999 777654221 11111100 000 1148
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.|..+..+|+|.|+|.|.|..|. ++.++.|.|
T Consensus 44 ~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V 75 (75)
T cd05893 44 LIQGATKEDAGWYTVSAKNEAGI-VSCTARLDV 75 (75)
T ss_pred EECCCCHHHCEEEEEEEEcCCCE-EEEEEEEeC
Confidence 88899999999999999999996 677787765
No 41
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.62 E-value=1.2e-14 Score=77.69 Aligned_cols=71 Identities=21% Similarity=0.496 Sum_probs=50.7
Q ss_pred cEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccce
Q psy15390 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQ 107 (142)
Q Consensus 28 ~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~ 107 (142)
++.|.|.+.|.|.|.+.|++ ++..+...... .... .+.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k-~g~~~~~~~~~--~~~~---------------------------------------~~~ 38 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVK-NGDMVIPSDYF--KIVK---------------------------------------EHN 38 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEE-CCeECCCCCCE--EEEe---------------------------------------cCC
Confidence 47899999999999999999 77655322111 1111 123
Q ss_pred EEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 108 l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+.|..++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 39 l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V 71 (71)
T cd05723 39 LQVLGLVKSDEGFYQCIAENDVGN-VQASAQLII 71 (71)
T ss_pred EEEEcCCcccCEEEEEEEEcCCCE-EEEEEEEEC
Confidence 566688888999999999999886 677777765
No 42
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.62 E-value=1.5e-14 Score=78.82 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=54.3
Q ss_pred ceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEE
Q psy15390 19 SSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEI 98 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~ 98 (142)
+...+.+|+.+.|.|.+.+. .+.+.|++ +|..+....+.+ . .
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~~~~~--~-~--------------------------------- 43 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGENNRTR--I-T--------------------------------- 43 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCCceEE--E-e---------------------------------
Confidence 45678899999999999886 56899999 887764322111 1 0
Q ss_pred EEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 99 IFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 99 ~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
...|.|..+..+|+|.|+|.|.|..|. ....+.|.|
T Consensus 44 ------~~~L~I~~~~~~DsG~Y~C~a~n~~g~-~~~~~~v~V 79 (79)
T cd04973 44 ------GEEVQIKDAVPRDSGLYACVTSSPSGS-DTTYFSVNV 79 (79)
T ss_pred ------CCEEEECCCChhhCEEEEEEEeCCCCc-ccEEEEEeC
Confidence 124777777788888888888877765 555565554
No 43
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.61 E-value=1.7e-14 Score=77.65 Aligned_cols=74 Identities=24% Similarity=0.476 Sum_probs=53.6
Q ss_pred cEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccce
Q psy15390 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQ 107 (142)
Q Consensus 28 ~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~ 107 (142)
.+.|.|.+.|.|.|.+.|++ ++..+....+..+.. ......
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k-~g~~l~~~~~~~~~~--------------------------------------~~~~~~ 41 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSK-DGKPLKLSGRVQIET--------------------------------------TASSTS 41 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEE-CCEEcCCCCeEEEEE--------------------------------------CCCeEE
Confidence 47899999999999999999 777663222111100 011235
Q ss_pred EEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 108 l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
|.|..+..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 42 L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 74 (74)
T cd05748 42 LVIKNAERSDSGKYTLTLKNPAGE-KSATINVKV 74 (74)
T ss_pred EEECCCCcCcCEEEEEEEECCCcc-EEEEEEEEC
Confidence 888899999999999999999986 677777765
No 44
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.61 E-value=2.1e-14 Score=79.36 Aligned_cols=82 Identities=20% Similarity=0.446 Sum_probs=59.3
Q ss_pred eEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEE
Q psy15390 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIF 100 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~ 100 (142)
..+.+|+.+.|.|.+.+.|.+.+.|++ +|..+....... ...+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~~~-------~~~~----------------------------- 46 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQEHRIG-------GYKV----------------------------- 46 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCCCCcee-------eeEE-----------------------------
Confidence 357789999999999999999999999 777654321100 0000
Q ss_pred eccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 101 HMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 101 ~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
......|.|..+..+|+|.|+|.|.|..|. ....+.|.|
T Consensus 47 -~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 85 (85)
T cd05857 47 -RNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV 85 (85)
T ss_pred -eCCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEEEEC
Confidence 001224778888999999999999999996 677777765
No 45
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.61 E-value=1.5e-14 Score=78.25 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=55.8
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|+++.|.|.+.+.|.|.+.|++ ++..+........ .....
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~-~g~~~~~~~~~~~---------------------------------------~~~~~ 40 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRL-NGVPIEELPPDPR---------------------------------------RRVDG 40 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEE-CCEECCCCCCcce---------------------------------------EEccC
Confidence 7899999999999999999999 7776543211100 00113
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+.|.|..++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 41 ~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 75 (76)
T cd04978 41 GTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV 75 (76)
T ss_pred CEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence 45888888889999999999999886 677777776
No 46
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.61 E-value=3.5e-14 Score=78.88 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=56.4
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|+.+.|.|.+.+.|.+.+.|++ ++..+.... .++. +..-.. |. ...
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~~~~-~r~~--------~~~~~~---~~---------------------~~~ 46 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEK-EDRIINPEM-SRYL--------VSTKEV---GD---------------------EVI 46 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEee-CCEECCCCC-CcEE--------EEEecC---CC---------------------cEE
Confidence 7899999999999999999999 776553221 1111 110000 00 002
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
+.|.|..+..+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~L~V~ 82 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGE-DRGIIQLTVQ 82 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCc-ceEEEEEEEe
Confidence 34888899999999999999999986 6777777764
No 47
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.61 E-value=9.7e-15 Score=76.75 Aligned_cols=64 Identities=28% Similarity=0.583 Sum_probs=47.4
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
+.|.|.+.+.|.|.+.|++ +|+.+... .. .+.|
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~-------~~---------------------------------------~~~L 33 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYK-DGKLISGK-------HS---------------------------------------QHSL 33 (67)
T ss_pred CEEEEEEEEeCCCEEEEEE-CCEECccc-------CC---------------------------------------cCEE
Confidence 4789999999999999999 88766310 00 2347
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEE
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVD 140 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~ 140 (142)
.|.++..+|+|.|+|.|.|..|. .+..+.+.
T Consensus 34 ~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~ 64 (67)
T cd05863 34 QIKDVTEASAGTYTLVLWNSAAG-LEKRISLE 64 (67)
T ss_pred EECCCCHHHCEEEEEEEEECCcc-EEEEEEEE
Confidence 88888888888888888888875 44444443
No 48
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.59 E-value=3.4e-14 Score=76.62 Aligned_cols=75 Identities=25% Similarity=0.498 Sum_probs=52.5
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
++|.|.+.|.|.|.+.|++ ++..+..... ++.... .+.| ...|
T Consensus 1 v~L~C~v~G~P~P~v~W~k-~~~~i~~~~~-r~~~~~-----------~~~~------------------------~~~L 43 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKK-NNEMLTYNTD-RISLYQ-----------DNCG------------------------RICL 43 (75)
T ss_pred CEEEEEEeecCCCeEEEEE-CCEECCCCCC-cEEEEE-----------cCCC------------------------eEEE
Confidence 4799999999999999999 7776642211 110000 0000 1148
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.|..++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 44 ~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 75 (75)
T cd05744 44 LIQNANKEDAGWYTVSAVNEAGV-VSCNARLDV 75 (75)
T ss_pred EECCCCcccCEEEEEEEEcCCCc-EEEEEEEeC
Confidence 88899999999999999999986 677777765
No 49
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=2.1e-14 Score=77.14 Aligned_cols=73 Identities=21% Similarity=0.461 Sum_probs=52.8
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|+++.|.|.+.+.|.+.+.|++ ++..+....+. ... ..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~~~~--~~~---------------------------------------~~ 38 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSK-GTELLTNSSRI--CIW---------------------------------------PD 38 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEE-CCEEcccCCCE--EEC---------------------------------------CC
Confidence 7889999999999999999999 77654322111 111 12
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 39 ~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 73 (73)
T cd04969 39 GSLEILNVTKSDEGKYTCFAENFFGK-ANSTGSLSV 73 (73)
T ss_pred CeEEEccCChhHCEEEEEEEECCCCc-eEEEEEEEC
Confidence 34788888888888888888888886 566676665
No 50
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=1.6e-14 Score=77.17 Aligned_cols=71 Identities=34% Similarity=0.692 Sum_probs=53.2
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
+.|.|.+.|.|.|.+.|++ ++..+..... . . ......|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k-~~~~~~~~~~-~--~--------------------------------------~~~~~~L 38 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDR-IDGPLSPNRT-K--K--------------------------------------LNNNKTL 38 (71)
T ss_pred CEEEEEeeEecCCeEEEEE-CCcCCCCCce-e--E--------------------------------------EcCCCEE
Confidence 4689999999999999999 6654422100 0 0 0113458
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.|..++.+|+|.|+|.|.|..|. .+..+.|.||
T Consensus 39 ~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~Ve 71 (71)
T cd05876 39 QLDNVLESDDGEYVCTAENSEGS-ARHHYTVTVE 71 (71)
T ss_pred EEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEEC
Confidence 88899999999999999999996 7888888886
No 51
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.58 E-value=3.8e-14 Score=77.38 Aligned_cols=76 Identities=29% Similarity=0.470 Sum_probs=54.7
Q ss_pred CCceeEEecCCcEEEEEEEecCCCC-eeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIF 95 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~ 95 (142)
.|+.+.+.+|+++.|.|.+.|.|.| .+.|++ +|+.+.... ...
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~~~-----~~~------------------------------ 47 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLGDPP-----APS------------------------------ 47 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECCCCC-----CCC------------------------------
Confidence 5677889999999999999999999 799999 887653200 001
Q ss_pred EEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 96 WEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 96 w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
.+.|.|..+ .|+|.|.|.|.|..|...+..+.|
T Consensus 48 ---------~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 48 ---------PSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred ---------CCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 123555444 367889999999888755555544
No 52
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.58 E-value=1.2e-13 Score=79.71 Aligned_cols=99 Identities=21% Similarity=0.416 Sum_probs=63.6
Q ss_pred ccCCCeeeecCCCCc--eeEE--ecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCe
Q psy15390 5 KSVPPNILDTESTPS--SVAV--REEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMG 80 (142)
Q Consensus 5 ~~~~p~~~~~~~~~~--~~~~--~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G 80 (142)
|..+|.|.. .+. .+.. ..|..+.|.|.+.+.|.+.+.|++ ++..+.... .+... .... .|
T Consensus 1 v~~~P~~~~---~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~~~-~r~~~--------~~~~---~~ 64 (109)
T cd05773 1 VRFAPDLQK---GPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAK-NGVPLDLGN-PRYEE--------TTEH---TG 64 (109)
T ss_pred Ccccccccc---CCceEEEEEecCCCCEEEEEEECcccCCCEEEEEE-CCEECCCCC-CeEEE--------Eeec---cC
Confidence 355777766 333 2222 356899999999999999999999 887664221 11100 0000 00
Q ss_pred EEEEEEEecCCccEEEEEEEeccccceEEEccCC-CCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 81 AYLCIATKIGPLKIFWEIIFHMHYGEQLNITKIS-RTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 81 ~y~C~~~~~~~~~~~w~~~~~~~~~~~l~i~~~~-~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
. ...+.|.|.++. .+|.|.|+|.|.|..|. .+..+.|.|
T Consensus 65 ~---------------------~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i~L~~ 104 (109)
T cd05773 65 T---------------------VHTSILTIINVSAALDYALFTCTAHNSLGE-DSLDIQLVS 104 (109)
T ss_pred c---------------------cceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEEEEEEe
Confidence 0 002358888886 58999999999999986 577777766
No 53
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.58 E-value=7.5e-14 Score=94.84 Aligned_cols=107 Identities=19% Similarity=0.367 Sum_probs=77.1
Q ss_pred eEEecCCcEEEEEE-----EecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEec------
Q psy15390 21 VAVREEFNITLTCK-----AEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI------ 89 (142)
Q Consensus 21 ~~~~~g~~v~l~C~-----~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~------ 89 (142)
..+.+|+.+.|.|. ..+.+.+.+.|++ +.. +. ..++....++.|.|.+++.+|.|.|+|.+.|.
T Consensus 131 ~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k-~~~-~~---~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~ 205 (326)
T PHA02785 131 QIVNERSTGEMVCPNINAFIASNVNADIIWSG-HRR-LR---NKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTY 205 (326)
T ss_pred ceecccCcEEEECCChhhcccCCCCceEEEcc-CCc-cC---CcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence 44668999999997 2356778999987 543 21 12333344568999999999999999998753
Q ss_pred ------------------------------------------CC---ccEEEEEEEecc---------------------
Q psy15390 90 ------------------------------------------GP---LKIFWEIIFHMH--------------------- 103 (142)
Q Consensus 90 ------------------------------------------~~---~~~~w~~~~~~~--------------------- 103 (142)
++ +.+.|.++....
T Consensus 206 ~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~ 285 (326)
T PHA02785 206 NVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTD 285 (326)
T ss_pred eEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccc
Confidence 11 258897632110
Q ss_pred ----ccceEEEccCCCCCCeEEEEEEecCCCCC
Q psy15390 104 ----YGEQLNITKISRTEMGAYLCIATNNVPPS 132 (142)
Q Consensus 104 ----~~~~l~i~~~~~~d~g~y~C~a~n~~~~~ 132 (142)
....|.|.+++.+|+|.|+|.|.|..+..
T Consensus 286 ~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 286 KRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred cceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 02468899999999999999999987653
No 54
>KOG4222|consensus
Probab=99.58 E-value=1.6e-14 Score=107.40 Aligned_cols=124 Identities=24% Similarity=0.526 Sum_probs=100.6
Q ss_pred CCceeEEecCCcEEEEEEE-ecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEec------
Q psy15390 17 TPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI------ 89 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~------ 89 (142)
.+....+..|+.+.|.|.- .+.|.+.+.|.+ +|..+......++...+++.|.|.++...|.|.|.|.++|+
T Consensus 137 ~prd~~~a~ge~avlEcgpP~ghpeptvSw~K-dg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS 215 (1281)
T KOG4222|consen 137 SPRDVQAAVGEEAVLECGPPRGHPEPTVSWVK-DGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERES 215 (1281)
T ss_pred CcccccccccceeEEeccCCCCCCCCcceeec-CCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccccccc
Confidence 6667788889999999974 456788999999 99999866666666778889999999999999999999987
Q ss_pred -------------------------------------CCccEEEEEE--------E-eccccceEEEccCCCCCCeEEEE
Q psy15390 90 -------------------------------------GPLKIFWEII--------F-HMHYGEQLNITKISRTEMGAYLC 123 (142)
Q Consensus 90 -------------------------------------~~~~~~w~~~--------~-~~~~~~~l~i~~~~~~d~g~y~C 123 (142)
+.+.+.|.+. . ......++.|.+++..|.|+|.|
T Consensus 216 ~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C 295 (1281)
T KOG4222|consen 216 IPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVC 295 (1281)
T ss_pred ccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceee
Confidence 3356777641 1 22233678899999999999999
Q ss_pred EEecCCCCCeeeEEEEEEC
Q psy15390 124 IATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 124 ~a~n~~~~~~s~~~~l~V~ 142 (142)
.|.|..|. .+|...|+|+
T Consensus 296 ~a~n~vG~-l~asa~ltV~ 313 (1281)
T KOG4222|consen 296 PAENLVGG-LEASATLTVQ 313 (1281)
T ss_pred eccccccc-cccccceEEe
Confidence 99999986 7888777774
No 55
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.57 E-value=6.3e-14 Score=78.22 Aligned_cols=86 Identities=19% Similarity=0.330 Sum_probs=55.8
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCc----ceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEe
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQ----PISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFH 101 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~ 101 (142)
|+.++|.|.+.+.|.|.+.|++ ++. .+....... ..+...... ...
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k-~~~~~g~~~~~~~~~~--------~~~~~~~~~---------------------~~~ 50 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLK-HVEVNGSKYGPDGLPY--------VTVLKVAGI---------------------NTT 50 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEE-ecccCCceeCCCCCce--------EEEEEecCC---------------------ccc
Confidence 6889999999999999999999 432 111000000 000000000 000
Q ss_pred ccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 102 MHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 102 ~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
......|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|+
T Consensus 51 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~sa~L~V~ 90 (90)
T cd04974 51 DNESEVLYLRNVSFDDAGEYTCLAGNSIGP-SHHSAWLTVL 90 (90)
T ss_pred ccccceEEEeccccccCcEEEEEeecccCc-ccCCEEEEeC
Confidence 011235889999999999999999999997 6778888885
No 56
>KOG4222|consensus
Probab=99.57 E-value=2.6e-14 Score=106.35 Aligned_cols=131 Identities=26% Similarity=0.505 Sum_probs=95.1
Q ss_pred CCCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceec-CC-cceEEeeccceEEEeec----C-CCCC
Q psy15390 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISI-NK-RKKVHMHYGEQLNITKI----S-RTEM 79 (142)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~-~~-~~~~~~~~~~~l~i~~v----~-~~d~ 79 (142)
.+|.++. =+....+..|+.++|.|.+.|.|.|.+.||+ +|+.... .. ..++.. .+++|.+-.+ + ..|.
T Consensus 30 ~~p~iie---hp~d~vvs~~~patlnc~asG~ppPti~w~k-~G~~~~~~e~~shR~~l-p~gsLf~l~~ahg~~a~~d~ 104 (1281)
T KOG4222|consen 30 QPPRIIE---HPHDLVVSKGEPATLNCKASGDPPPTIEWYK-DGENVFKGEPGSHRFLL-PDGSLFLLRLAHGKKAGHDH 104 (1281)
T ss_pred CCCceEe---cchhhhccCCCCceeecCCCCCCCCceeccc-CCcccCCCCCCCcceec-CCccEEEEecccCCcccCCC
Confidence 4566654 4556678889999999999999999999999 8865432 22 344333 3444444333 1 2389
Q ss_pred eEEEEEEEec---------------------------------------------CCccEEEEEE-----------Eecc
Q psy15390 80 GAYLCIATKI---------------------------------------------GPLKIFWEII-----------FHMH 103 (142)
Q Consensus 80 G~y~C~~~~~---------------------------------------------~~~~~~w~~~-----------~~~~ 103 (142)
|.|.|.+.|. +.+.+.|.+. ....
T Consensus 105 G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li 184 (1281)
T KOG4222|consen 105 GVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI 184 (1281)
T ss_pred ceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe
Confidence 9999999875 3356777532 2334
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
..+.|.|.++..+|+|+|.|.|.|..|.+.+...+|.|.
T Consensus 185 sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~ 223 (1281)
T KOG4222|consen 185 SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ 223 (1281)
T ss_pred cCCcEEEeccccCCCceeeeeecccccccccccceeeec
Confidence 577899999999999999999999999887887777763
No 57
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.57 E-value=9.2e-14 Score=77.94 Aligned_cols=86 Identities=27% Similarity=0.497 Sum_probs=55.4
Q ss_pred CeeeecCCCCceeEEec---CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEE
Q psy15390 9 PNILDTESTPSSVAVRE---EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCI 85 (142)
Q Consensus 9 p~~~~~~~~~~~~~~~~---g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~ 85 (142)
|.|.. .|....+.+ |..+.|.|.+.|.|.|.+.|++ ++..+.... .+.. ..
T Consensus 2 P~f~~---~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~~~~-~~~~-~~-------------------- 55 (93)
T cd05849 2 PVFEE---QPIDTIYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDIDLTN-DRYS-MV-------------------- 55 (93)
T ss_pred CEEEE---CCCCEEecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEccCCC-CeEE-EE--------------------
Confidence 56665 455544444 3479999999999999999999 776543211 0110 01
Q ss_pred EEecCCccEEEEEEEeccccceEEEccCC-CCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 86 ATKIGPLKIFWEIIFHMHYGEQLNITKIS-RTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 86 ~~~~~~~~~~w~~~~~~~~~~~l~i~~~~-~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
++.|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus 56 -------------------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 56 -------------------GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred -------------------CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 2346666664 5788888888888888654555554
No 58
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.57 E-value=4.3e-14 Score=77.45 Aligned_cols=79 Identities=25% Similarity=0.497 Sum_probs=57.0
Q ss_pred eEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEE
Q psy15390 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIF 100 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~ 100 (142)
+.+..|+++.|.|.+.+.|.+.+.|++ ++..+....... .
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k-~~~~~~~~~~~~--~------------------------------------- 43 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLK-DNKPLTPTEIGE--S------------------------------------- 43 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEE-CCcCCcCCccce--e-------------------------------------
Confidence 456679999999999999999999999 766543221000 0
Q ss_pred eccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 101 HMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 101 ~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
......|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 44 -~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v 82 (82)
T cd05856 44 -RKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYKVDV 82 (82)
T ss_pred -cCceEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEEEeC
Confidence 001234788888889999999999998886 677777664
No 59
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.57 E-value=4.7e-14 Score=76.69 Aligned_cols=67 Identities=27% Similarity=0.424 Sum_probs=44.7
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|+++.|.|.+.+.|.|.+.|++ ++..+....+..+.. . ...
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~-~~~~~~~~~~~~~~~-~-------------------------------------~~~ 41 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRL-NWGHVPDSARVSITS-E-------------------------------------GGY 41 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEE-CCeECCCCCCEEEEE-C-------------------------------------CCE
Confidence 7889999999999999999999 665443221111000 0 012
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCC
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPP 131 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~ 131 (142)
..|.|.++..+|+|.|+|.|.|..|.
T Consensus 42 ~~L~I~~v~~~D~G~Y~C~a~N~~G~ 67 (78)
T cd05743 42 GTLTIRDVKESDQGAYTCEAINTRGM 67 (78)
T ss_pred EEEEECCCChHHCEEEEEEEEecCCE
Confidence 24677777777777777777777775
No 60
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.56 E-value=8.5e-14 Score=75.10 Aligned_cols=73 Identities=27% Similarity=0.588 Sum_probs=50.3
Q ss_pred EEEEEEEecCCCCeeEEEecCCcce-ecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccce
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPI-SINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQ 107 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~ 107 (142)
+.|.|.+.|.|.|.+.|++ ++... ......++.. ....+.
T Consensus 1 a~l~C~~~G~P~P~v~W~k-~~~~~~~~~~~~~~~~--------------------------------------~~~~~~ 41 (75)
T cd05763 1 ARLECAATGHPTPQIAWQK-DGGTDFPAARERRMHV--------------------------------------MPEDDV 41 (75)
T ss_pred CEeEeecccccCCEEEEEe-CCCccCCcccccceEE--------------------------------------ecCCCE
Confidence 3689999999999999999 65432 1111001000 011235
Q ss_pred EEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 108 l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 42 L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 42 FFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred EEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 788888889999999999998886 677787776
No 61
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.56 E-value=7.2e-14 Score=75.18 Aligned_cols=74 Identities=27% Similarity=0.488 Sum_probs=52.0
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|+.+.|.|.+.+.|.|.+.|++.++..+.... +..... .
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~---------------------------------------~ 39 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSS--RTLVYD---------------------------------------N 39 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCC--eEEEec---------------------------------------C
Confidence 78899999999999999999974555443211 111111 2
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+.|.|..+..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 40 ~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 74 (74)
T cd05764 40 GTLDILITTVKDTGSFTCIASNAAGE-ATATVELHI 74 (74)
T ss_pred CEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEEC
Confidence 34677777888888888888888886 567776665
No 62
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.55 E-value=8.6e-14 Score=78.17 Aligned_cols=83 Identities=16% Similarity=0.273 Sum_probs=57.3
Q ss_pred ceeEEecCCcEEEEEEEec-----CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCcc
Q psy15390 19 SSVAVREEFNITLTCKAEG-----FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLK 93 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~ 93 (142)
....+.+|+.+.|.|.+.+ .|.+.+.||+ ++..+...... +...
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk-~~~~~~~~~~~------~~r~------------------------ 55 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYK-SDGKTPIPTEE------RSRM------------------------ 55 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEE-cCCCCcccccc------ccee------------------------
Confidence 4556789999999999988 5788999999 66543211000 0000
Q ss_pred EEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 94 IFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 94 ~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
....+.|.|..+..+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 56 --------~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~~~~~~L~v 94 (94)
T cd05756 56 --------HQQKDLLWFLPAALEDSGLYTCVVRNSTYC-MKVSISLTV 94 (94)
T ss_pred --------eecCCeEEEccCCcccCeEEEEEEcCCCcc-EEEEEEEEC
Confidence 001235788888889999999999988876 677777765
No 63
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.54 E-value=2e-13 Score=75.36 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=54.6
Q ss_pred CcEEEEEEEecCCCC--eeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccc
Q psy15390 27 FNITLTCKAEGFPAP--EIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHY 104 (142)
Q Consensus 27 ~~v~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~ 104 (142)
++++|.|.+.+.|.+ .+.|++ +++.+..... +....+..+ ...
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~~~~-------~~~~~~~~~---------------------------~~~ 45 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSL-DDFPIDLDKP-------NGHYRRMEV---------------------------KET 45 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEccccCC-------CCcEEEEEe---------------------------cce
Confidence 478999999999887 579999 8876643210 000000000 011
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.+.|.|.+++..|+|.|+|.|.|..|. .+..+.|.|+
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L~V~ 82 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATLVVR 82 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEEEEE
Confidence 235888999999999999999999886 6777777763
No 64
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.54 E-value=7e-14 Score=75.82 Aligned_cols=73 Identities=26% Similarity=0.519 Sum_probs=47.1
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
++|.|.+.+.|.|.+.|++ +|..+............ .+.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~---------------------------------------~~~L 40 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFR-DGTPLSDGQGNYSVSSK---------------------------------------ERTL 40 (77)
T ss_pred CEEEEEeeecCCCcEEEEE-CCEECCCCCccEEEeCC---------------------------------------CCEE
Confidence 5799999999999999999 77765432111100011 2246
Q ss_pred EEccCCCCCCeEEEEEEecCCCCC-eeeEEEEEE
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPS-VSKRITVDV 141 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~-~s~~~~l~V 141 (142)
.|.++..+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus 41 ~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 41 TLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred EEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 777777778888888888877752 234555544
No 65
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.54 E-value=1.5e-13 Score=76.72 Aligned_cols=82 Identities=22% Similarity=0.496 Sum_probs=53.6
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|+.+.|.|.+.+.|.|.+.|++ ++..+... ... .....+.| .....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~-------~~~--------~~~~~~r~------------------~v~~~ 46 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQK-EGSQNLLF-------SYQ--------PPQSSSRF------------------SVSQT 46 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEe-CCCcceee-------ccc--------CCCCCCeE------------------EECCC
Confidence 7889999999999999999999 55422100 000 00000000 11113
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 82 (90)
T cd05726 47 GDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYLEVT 82 (90)
T ss_pred CeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEEEEe
Confidence 35888888889999999999998886 6677777764
No 66
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.53 E-value=9.3e-14 Score=75.36 Aligned_cols=61 Identities=18% Similarity=0.395 Sum_probs=46.0
Q ss_pred CCceeEEecCCcEEEEEEEecCCCC-eeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
.|+...+.+|++++|.|.+.+.|.+ .+.|++ ++..+. ..++.|.|.++ .+|+|.|+|.+.+
T Consensus 6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~---------~~~~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLE---------TTTNSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEee---------ccCCeEEEeec-ccCCEEeEEECCC
Confidence 6777889999999999999887754 699999 887652 12445777777 7777777777654
No 67
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.52 E-value=8.4e-14 Score=74.29 Aligned_cols=71 Identities=32% Similarity=0.676 Sum_probs=51.5
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
+.|.|.+.+.|.|.+.|++ ++..+.... .. . ......|
T Consensus 1 v~l~C~~~g~P~p~v~W~k-~~~~~~~~~-~~--~--------------------------------------~~~~~~L 38 (71)
T cd05731 1 LLLECIAEGLPTPEISWIK-IGGELPADR-TK--F--------------------------------------ENFNKTL 38 (71)
T ss_pred CEEEEEeeEecCCeEEEEE-CCeECCCCc-ee--E--------------------------------------ecCCCEE
Confidence 4789999999999999999 554432110 00 0 0012358
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus 39 ~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 71 (71)
T cd05731 39 KIDNVSEEDDGEYRCTASNSLGS-ARHTISVTVE 71 (71)
T ss_pred EECCCCHHHCEEEEEEEEeCCce-EEEEEEEEEC
Confidence 88889999999999999999886 6778888875
No 68
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.52 E-value=2.8e-13 Score=73.24 Aligned_cols=74 Identities=30% Similarity=0.570 Sum_probs=52.2
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
+.|.|.+.+.|.+.+.|++ +++.+......++... .....|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k-~~~~l~~~~~~~~~~~--------------------------------------~~~~~l 41 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLK-NGMDITPKLSKQLTLI--------------------------------------ANGSEL 41 (76)
T ss_pred CEeEeEeeecCCCEEEEEE-CCEECCCCCCccEEEe--------------------------------------CCCCEE
Confidence 3689999999999999999 7766543221111111 112347
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.|.++..+|.|.|+|.|.|..|. ....+.|.|+
T Consensus 42 ~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 74 (76)
T cd05736 42 HISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE 74 (76)
T ss_pred EECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence 88888888999999999998886 5777777774
No 69
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.52 E-value=3e-13 Score=75.52 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCcEEEEEEEecCCCCeeEEEecC---CcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEec
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRRED---NQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHM 102 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~ 102 (142)
|+++.|.|.+.+.|.|.+.|++.. +..+.............. .+... .
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~------------------------~ 51 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTA-----GVNTT------------------------D 51 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccC-----Cceec------------------------C
Confidence 788999999999999999999821 222211110000000000 00000 0
Q ss_pred cccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 103 HYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 103 ~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 52 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V 89 (90)
T cd05858 52 KEMEVLYLRNVTFEDAGEYTCLAGNSIGI-SHHSAWLTV 89 (90)
T ss_pred CceeEEEEccCCHHHCEEEEEEEEeCCCc-ccceEEEEE
Confidence 11236999999999999999999999996 677777776
No 70
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.52 E-value=2.4e-13 Score=73.64 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=50.8
Q ss_pred EEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceEEE
Q psy15390 31 LTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNI 110 (142)
Q Consensus 31 l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l~i 110 (142)
|.|.+.|.|.|.++|++ +|+.+......... +.... .. ...+.|.|
T Consensus 3 i~~~v~G~P~Pti~W~k-ng~~l~~~~~~~~~--------~~~~~---~~----------------------~~~~~L~i 48 (79)
T cd05855 3 IPFTVKGNPKPTLQWFH-EGAILNESEYICTK--------IHVIN---NT----------------------EYHGCLQL 48 (79)
T ss_pred EEEEEeEeCCCceEEEE-CCEECCCCcceeee--------eEeec---cc----------------------ceEEEEEE
Confidence 68999999999999999 89887543211100 00000 00 01235889
Q ss_pred ccCCCCCCeEEEEEEecCCCCCeeeEEEEE
Q psy15390 111 TKISRTEMGAYLCIATNNVPPSVSKRITVD 140 (142)
Q Consensus 111 ~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~ 140 (142)
.++...|+|.|+|.|.|..|. .+..+.+.
T Consensus 49 ~~~~~~D~G~YtC~A~N~~G~-~~~~~~~~ 77 (79)
T cd05855 49 DNPTHLNNGIYTLVAKNEYGE-DEKNVSAH 77 (79)
T ss_pred CCCCcccCEEEEEEEEcCCcc-cceEEEee
Confidence 999999999999999999996 56665543
No 71
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.52 E-value=1.5e-13 Score=74.46 Aligned_cols=72 Identities=28% Similarity=0.562 Sum_probs=46.8
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
+.|.|.+.|.|.|.+.|++ ++..+......++.... ..+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k-~g~~l~~~~~~~~~~~~--------------------------------------~~g~L 41 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTR-NGTHFDPEKDPRVTMKP--------------------------------------DSGTL 41 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECCCCCCCCEEEeC--------------------------------------CCCEE
Confidence 4789999999999999999 88766432211111110 12235
Q ss_pred EEccCC----CCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 109 NITKIS----RTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 109 ~i~~~~----~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
.|..+. .+|+|.|+|.|.|..|...+..+.|
T Consensus 42 ~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 42 VIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred EEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 555543 3678899999999888755655544
No 72
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.52 E-value=1.8e-13 Score=72.61 Aligned_cols=69 Identities=22% Similarity=0.551 Sum_probs=49.1
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
++|.|.+.+.|.|.+.|++ ++..+... +.... ....|
T Consensus 1 v~l~C~~~g~P~p~v~W~k-~~~~~~~~---~~~~~---------------------------------------~~~~L 37 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRK-EDGELPKG---RAEIL---------------------------------------DDKSL 37 (69)
T ss_pred CEEEEECccCCCCEEEEEE-CCccCCCC---cEEEe---------------------------------------eCCEE
Confidence 4789999999999999999 55433211 10000 12358
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 38 ~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 69 (69)
T cd05725 38 KIRNVTAGDEGSYTCEAENMVGK-IEASASLTV 69 (69)
T ss_pred EECcCChhHCEEEEEEEEcCCCc-EEEEEEEEC
Confidence 88888888999999999998886 666777665
No 73
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.51 E-value=2.9e-13 Score=73.72 Aligned_cols=79 Identities=28% Similarity=0.555 Sum_probs=52.4
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
++|.|.+.|.|.|.+.|++.++....... .. . ...|.+ .....+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~-~~--~-------------~~~~r~------------------~~~~~~~L 46 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHT-HT--C-------------CLAGRI------------------QLLSNGSL 46 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccc-cc--c-------------ccCCCE------------------EEecCCeE
Confidence 57999999999999999994332211000 00 0 000000 01113468
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.|..+..+|+|.|+|.|.|..|...+..+.|+|
T Consensus 47 ~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 47 LIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred EECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 899999999999999999999987788888775
No 74
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.51 E-value=4.2e-13 Score=76.08 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=61.2
Q ss_pred CCeeeecCCCCceeEEecCCcEEEEEEEecCCCC-eeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEE
Q psy15390 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86 (142)
Q Consensus 8 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~ 86 (142)
||.+. .+....+.+|+.+.|.|.+.+.|.| .+.|++ ++..+......++ .+..... +.|.
T Consensus 2 pp~i~----~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~~~~~r~--------~i~~~~~-~~~~----- 62 (98)
T cd05758 2 PPIIT----SEATQYAILGDKGRVECFIFSTPPPDRIVWTW-KENELESGSSGRY--------TVETDPS-PGGV----- 62 (98)
T ss_pred CCeEc----CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccCCCCCCE--------EEEEecC-CCce-----
Confidence 56664 3456678899999999999999998 599999 7776643221111 1111000 0000
Q ss_pred EecCCccEEEEEEEeccccceEEEccCCCCC-CeEEEEEEecCCCCCeeeEEEE
Q psy15390 87 TKIGPLKIFWEIIFHMHYGEQLNITKISRTE-MGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 87 ~~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d-~g~y~C~a~n~~~~~~s~~~~l 139 (142)
.+.|.|..+..+| .|.|+|.|.|..|. ....+.|
T Consensus 63 ------------------~s~L~I~~v~~~d~~G~Y~C~A~N~~G~-~~~~~~L 97 (98)
T cd05758 63 ------------------LSTLTISNTQESDFQTSYNCTAWNSFGS-GTAIISL 97 (98)
T ss_pred ------------------EEEEEECCccccccceeEEEEEEcCCCc-ccEEEEe
Confidence 1258888888855 89999999999986 4555544
No 75
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.50 E-value=2.9e-13 Score=73.31 Aligned_cols=25 Identities=32% Similarity=0.865 Sum_probs=21.6
Q ss_pred EEEEEEEecCCCCeeEEEecCCccee
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPIS 54 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~ 54 (142)
|.|.|.+.|.|.|.+.|++ ++..+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k-~g~~l~ 25 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTR-NGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECC
Confidence 5789999999999999999 777653
No 76
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=4.7e-13 Score=73.91 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=53.8
Q ss_pred CcEEEEEEEecCCCC--eeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccc
Q psy15390 27 FNITLTCKAEGFPAP--EIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHY 104 (142)
Q Consensus 27 ~~v~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~ 104 (142)
+++.|.|.+.+.|.+ .+.|++ +|+.+...... .... .......
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~~~~~-------~~~~---------------------------~~~~~~~ 45 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSF-NGVPIDFDKDG-------GHYR---------------------------RVGGKDS 45 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEeeccCCC-------ccEE---------------------------EEecccc
Confidence 478999999998877 568999 88766432110 0000 0001112
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.+.|.|.+++..|+|.|+|.|.|..|. .+..+.|.|+
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~ 82 (85)
T cd04970 46 NGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADLIVR 82 (85)
T ss_pred cceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEEEEE
Confidence 346888899999999999999998886 6777777763
No 77
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.50 E-value=7.3e-13 Score=73.76 Aligned_cols=83 Identities=17% Similarity=0.333 Sum_probs=54.9
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCc--ceEEeeccceEEEeecCCCCCeEEEEEEEecCCccE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKR--KKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKI 94 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~ 94 (142)
++..+.+.+|+++.|.|.+.+ |.+.+.|++ ++..+..... .+...
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k-~~~~~~~~~~~~~~~~~------------------------------- 48 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLF-QGGPLQRKEEPEERLLV------------------------------- 48 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEE-CCcccccccCcCceEEE-------------------------------
Confidence 456678899999999999876 777899999 6654432210 01000
Q ss_pred EEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 95 FWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 95 ~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
....|.|..+..+|+|.|+|.|.+..+...+.++.|.|
T Consensus 49 ---------~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V 86 (89)
T cd04979 49 ---------TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV 86 (89)
T ss_pred ---------cCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence 01236777777788888888887665555566666665
No 78
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.49 E-value=1.2e-13 Score=73.29 Aligned_cols=68 Identities=25% Similarity=0.553 Sum_probs=47.4
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
+.|.|.+.|.|.|.+.|++ +|+.+.... + ... ...|
T Consensus 1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~~~--~--~~~---------------------------------------~~~L 36 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYK-NGQLIVLNH--T--FKR---------------------------------------GVHL 36 (70)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCCCC--E--Ecc---------------------------------------CCEE
Confidence 4689999999999999999 888764321 1 001 2247
Q ss_pred EEccCCCCCCeEEEEEEecCCCC-CeeeEEEEE
Q psy15390 109 NITKISRTEMGAYLCIATNNVPP-SVSKRITVD 140 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~-~~s~~~~l~ 140 (142)
.|.++..+|+|.|+|.|.|..|. ....++.|.
T Consensus 37 ~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 37 TIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 77788888888888888888875 234444444
No 79
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.48 E-value=3.9e-13 Score=74.11 Aligned_cols=69 Identities=20% Similarity=0.435 Sum_probs=51.6
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEec
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.|+...+..|+++.|.|.+.+ +.+.+.|++ +|..+..+. .+... .++.|.|.+++..|+|.|+|.+.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~~-~r~~~-~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPES-AKYLL-YRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCCC-ceEEE-ECCcEEEeCCCHHHCEEEEEEEEec
Confidence 567788999999999999754 567899999 888876542 23222 3456788888888888888877654
No 80
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.48 E-value=5.9e-13 Score=72.12 Aligned_cols=72 Identities=29% Similarity=0.575 Sum_probs=45.4
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
+.|.|.+.|.|.|.+.|++ ++..+......++... ...+.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k-~g~~~~~~~~~~~~~~--------------------------------------~~~~~L 41 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTR-NGKFFNVAKDPRVSMR--------------------------------------RRSGTL 41 (77)
T ss_pred CEEEEeccccCCCEEEEEE-CCEEccCcCCCcEEEe--------------------------------------CCCceE
Confidence 4789999999999999999 7775532211111110 012235
Q ss_pred EEccCC----CCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 109 NITKIS----RTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 109 ~i~~~~----~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
.|..+. ..|+|.|+|.|.|..|...+..+.|
T Consensus 42 ~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 42 VIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred EEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 554432 2368888899988888765665544
No 81
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.47 E-value=3.6e-12 Score=71.65 Aligned_cols=92 Identities=15% Similarity=0.296 Sum_probs=55.3
Q ss_pred CceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEE
Q psy15390 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWE 97 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~ 97 (142)
..+..+.+|+++.|.|.+.+.|.+.+.|++.++..+..+.. + ...+..+.+...
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~-~--~~~~~r~~~~~~----------------------- 57 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEK-R--ALRDNRIQLVKS----------------------- 57 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCe-E--EEeCCeEEEEeC-----------------------
Confidence 45678899999999999999999999999943332221110 0 000111111000
Q ss_pred EEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 98 IIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 98 ~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
......|.|.++..+|+|.|+|.+.... ..+..+.|.|
T Consensus 58 ----~~~~~~L~I~nV~~~D~G~YtC~~~t~~--~~~~~~~~~v 95 (95)
T cd05882 58 ----TPTELIISISNVQLSDEGEYTCSIFTMP--VRTAKATVTV 95 (95)
T ss_pred ----CCceEEEEECCCCcccCEEEEEEEEeec--cccEEEEEEC
Confidence 0112358888888888888888888743 2345555544
No 82
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=1.8e-13 Score=72.68 Aligned_cols=68 Identities=26% Similarity=0.577 Sum_probs=46.0
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
|.|.|.+.+.|.|.+.|++ ++..+.... +..... .+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k-~g~~~~~~~--~~~~~~---------------------------------------~~~L 38 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNK-DGVQVTESG--KFHISP---------------------------------------EGYL 38 (69)
T ss_pred CEeEecceEeCCCEEEEEE-CCEECCCCC--CEEECC---------------------------------------CCEE
Confidence 5789999999999999999 776553221 111111 1247
Q ss_pred EEccCCCCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 109 NITKISRTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
.|.++..+|+|.|+|.|.|..|. .+..+.|
T Consensus 39 ~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L 68 (69)
T cd05746 39 AIRDVGVADQGRYECVARNTIGY-ASVSMVL 68 (69)
T ss_pred EECcCChhhCEEEEEEEECCCCc-EEEEEEe
Confidence 77777777888888888888776 4555544
No 83
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.47 E-value=2.2e-13 Score=72.71 Aligned_cols=60 Identities=27% Similarity=0.594 Sum_probs=43.1
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceE
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQL 108 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l 108 (142)
+.|.|.+.|.|.|.+.|++ +|+.+.... +. ... ...|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~~~--~~-~~~---------------------------------------~~~L 37 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYK-NGKLISEKN--RT-KKS---------------------------------------GHSL 37 (71)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCCCC--EE-EcC---------------------------------------CCEE
Confidence 4689999999999999999 887764331 10 111 2347
Q ss_pred EEccCCCCCCeEEEEEEecCCCC
Q psy15390 109 NITKISRTEMGAYLCIATNNVPP 131 (142)
Q Consensus 109 ~i~~~~~~d~g~y~C~a~n~~~~ 131 (142)
.|.++..+|+|.|+|.|.|..|.
T Consensus 38 ~I~~v~~~D~G~YtC~a~N~~g~ 60 (71)
T cd04976 38 TIKDVTEEDAGNYTVVLTNKQAK 60 (71)
T ss_pred EECcCCHHHCEEEEEEEEcCCcc
Confidence 77777778888888888887765
No 84
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.47 E-value=7.6e-13 Score=72.68 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=52.9
Q ss_pred CcEEEEEEEec--CCCCeeEEEecCCcceecCC-cceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecc
Q psy15390 27 FNITLTCKAEG--FPAPEIKWRREDNQPISINK-RKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMH 103 (142)
Q Consensus 27 ~~v~l~C~~~~--~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~ 103 (142)
+++.|.|.+.+ .+.+.+.|++ +|+.+.... ..++.... ...
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~~~~~~~~~~~~-----------------------------------~~~ 44 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSF-NGHLIDFQKDGDHFERVG-----------------------------------GQD 44 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEE-CCEECcccCCCccEEEec-----------------------------------cCC
Confidence 47899999977 4466899999 888774211 11111100 001
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
..+.|.|.+++..|+|+|+|.|.|..+. ++.++.|.|+
T Consensus 45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L~V~ 82 (85)
T cd05853 45 SAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADLIVR 82 (85)
T ss_pred CCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEEEEe
Confidence 1345888888888999999999988875 6777777763
No 85
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.46 E-value=2.3e-13 Score=72.53 Aligned_cols=57 Identities=28% Similarity=0.473 Sum_probs=38.5
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
+.|.|.+.|.|.|.+.|++ ++.++.... .+. ...+.+|.|.+++.+|+|.|+|.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~~-~~~-~~~~~~L~I~~v~~~D~G~YtC~a~~ 57 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLK-DGLPAAEKC-SRY-HVDGYSLVIKDVTEEDAGIYTILLGI 57 (72)
T ss_pred CeEEeeEEEcCCCeEEEEE-CCEECCCCC-cEE-EeCCCEEEECcCCHHHCEEEEEEEEc
Confidence 3689999999999999999 887765432 121 12334566666666666666666654
No 86
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.46 E-value=1.1e-12 Score=71.70 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=53.9
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|+.+.|.|.+.+.|.|.+.|++ ++... . ........ ..+. +.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k-~~~~~---~--~~~~~~~~----------~~~~------------------~~~~~~ 46 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEK-QVHGK---E--NLIMRPNH----------VRGN------------------VVVTNI 46 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEe-cCCCC---c--ceeecCCc----------ccCC------------------EEEccc
Confidence 7899999999999999999999 42110 0 00000000 0000 011113
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 81 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPLSV 81 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCce-EEEEEEEeC
Confidence 46899999999999999999999996 677777765
No 87
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.46 E-value=7.4e-13 Score=72.73 Aligned_cols=77 Identities=21% Similarity=0.306 Sum_probs=54.1
Q ss_pred CceeEEecCCcEEEEEEEec-CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 18 PSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
+....+.+|++++|.|.+.+ .+...+.|++ ++..+.. ...
T Consensus 6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k-~g~~~~~-------~~~------------------------------- 46 (83)
T cd05753 6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYR-DGKAKKY-------SHS------------------------------- 46 (83)
T ss_pred CCcceecCCCCEEEEeeCCCCCcceEEEEEE-CCeEccc-------cCC-------------------------------
Confidence 33446889999999999854 4556799999 6654311 000
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
...|.|.+++.+|+|.|+|.|.+..++..|..+.|+|
T Consensus 47 --------~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 47 --------NSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred --------CceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 1247777888888888888888887776677777765
No 88
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.45 E-value=8.3e-13 Score=70.02 Aligned_cols=27 Identities=33% Similarity=0.709 Sum_probs=24.3
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcce
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPI 53 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~ 53 (142)
|++++|.|.+.|.|.|.+.|++ ++..+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l 27 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMK-GGEEL 27 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEE-CCEEC
Confidence 6889999999999999999999 77655
No 89
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.45 E-value=2.4e-12 Score=71.94 Aligned_cols=42 Identities=26% Similarity=0.631 Sum_probs=30.6
Q ss_pred CeeeecCCCCceeEEe---cCCcEEEEEEEecCCCCeeEEEecCCccee
Q psy15390 9 PNILDTESTPSSVAVR---EEFNITLTCKAEGFPAPEIKWRREDNQPIS 54 (142)
Q Consensus 9 p~~~~~~~~~~~~~~~---~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~ 54 (142)
|.|.. .+....+. .|+.+.|.|.+.+.|.+.+.|++ +++.+.
T Consensus 2 P~f~~---~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k-~~~~l~ 46 (91)
T cd04967 2 PVFEE---QPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLM-NGTEID 46 (91)
T ss_pred CeeEe---CCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEE-CCEECC
Confidence 45554 45444433 34679999999999999999999 777663
No 90
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.44 E-value=3e-12 Score=72.08 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=29.2
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCC
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDN 50 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~ 50 (142)
..+++.+.+|+++.|.|.+.+.|.+.+.|+++++
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~ 36 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQ 36 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCC
Confidence 4567889999999999999999999999997433
No 91
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.41 E-value=1.8e-12 Score=70.77 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=51.7
Q ss_pred EEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccceEEE
Q psy15390 31 LTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNI 110 (142)
Q Consensus 31 l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l~i 110 (142)
|.|.+.|.|.|.++|++ +|+.+.......... ..... ......+.|.|
T Consensus 3 i~~~v~G~P~P~v~W~k-~g~~i~~~~~~~~~~--------~~~~~-----------------------~~~~~~~~L~I 50 (81)
T cd04971 3 IPFTVRGNPKPTLTWYH-NGAVLNESDYIRTEI--------HYEVT-----------------------TPTEYHGCLQF 50 (81)
T ss_pred EEEEeEeeCCCcEEEEE-CCEECcCCCceeEEE--------Eeecc-----------------------cccccEEEEEE
Confidence 68999999999999999 888775432111100 00000 00111345888
Q ss_pred ccCCCCCCeEEEEEEecCCCCCeeeEEEEE
Q psy15390 111 TKISRTEMGAYLCIATNNVPPSVSKRITVD 140 (142)
Q Consensus 111 ~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~ 140 (142)
.+++..|+|.|+|.|.|..|. .+..+.|.
T Consensus 51 ~~~~~~D~G~YtC~A~N~~G~-~~~~~~~~ 79 (81)
T cd04971 51 DNPTHVNNGNYTLVASNEYGQ-DSKSISAH 79 (81)
T ss_pred CCCCcccCeEEEEEEEeCCCC-eeeEEEee
Confidence 999999999999999999986 66666554
No 92
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.40 E-value=8.8e-12 Score=68.64 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=53.7
Q ss_pred CCcEEEEEEEecC--CCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecc
Q psy15390 26 EFNITLTCKAEGF--PAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMH 103 (142)
Q Consensus 26 g~~v~l~C~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~ 103 (142)
|+++.|.|.+.+. |.+.+.|++ +++.+..... .. .. ... .... .
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~-~~~~~~~~~~----~~-~~-----~~~-~~~~----------------------~ 46 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTY-PGKKRGRGKS----MV-TR-----QSL-SEAT----------------------E 46 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEec-CCcccCCceE----ee-cc-----ccc-ccce----------------------E
Confidence 7899999999998 778999988 5543321100 00 00 000 0000 0
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
....|.|.+++.+|+|.|+|.|.|..+. .+.+..|.|
T Consensus 47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~~v~v 83 (84)
T cd05742 47 LSSTLTIPNATLKDSGTYTCAASSGTMD-QKESTKVNI 83 (84)
T ss_pred EEEEEEECCCChhhCEEEEEEEccCCCc-eEEEEEEEE
Confidence 1235899999999999999999999886 677777665
No 93
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.40 E-value=2.2e-11 Score=67.06 Aligned_cols=81 Identities=16% Similarity=0.326 Sum_probs=50.4
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEecccc
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYG 105 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~ 105 (142)
|++++|.|.+.+.|.+.+.|++ .++...... .. . ....... ....
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~-~~---~-------~~~~~~~-----------------------~~~~ 45 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTY-PGKDIGKGI-PE---V-------EEVKVPA-----------------------TTLR 45 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEE-CCccCCCCc-eE---E-------EEEecCC-----------------------cEEE
Confidence 7899999999999889999998 443211000 00 0 0000000 0012
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCC-CeeeEEEEEE
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPP-SVSKRITVDV 141 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~-~~s~~~~l~V 141 (142)
..|.|.+++.+|+|.|+|.|.|..+. ..+.++.|+|
T Consensus 46 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 46 STLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred EEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 35888888888999999998876542 2466777766
No 94
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.39 E-value=1.8e-11 Score=67.37 Aligned_cols=82 Identities=28% Similarity=0.486 Sum_probs=54.6
Q ss_pred eEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEE
Q psy15390 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIF 100 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~ 100 (142)
+.+..|+.+.|.|.+.+.|.+.+.|++ ++..+....... . ...
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k-~~~~~~~~~~~~--~--------~~~-------------------------- 46 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLK-DGKPFKKEHRIG--G--------YKV-------------------------- 46 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEE-CCEECcccCcee--E--------EEc--------------------------
Confidence 456689999999999998888999999 766543221000 0 000
Q ss_pred eccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 101 HMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 101 ~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
......|.|..+..+|+|.|.|.|.|..|. .+.++.|.|
T Consensus 47 -~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~l~v 85 (85)
T cd05729 47 -RKKKWTLILESVVPSDSGKYTCIVENKYGS-INHTYKVDV 85 (85)
T ss_pred -cCcEEEEEEeECCcccCEEEEEEEEECCce-EEEEEEEeC
Confidence 000124777778888888888888888775 566666654
No 95
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.38 E-value=4.2e-12 Score=71.06 Aligned_cols=71 Identities=21% Similarity=0.475 Sum_probs=48.5
Q ss_pred CceeEEecCCcEEEEEEE-ecCCCCeeEEEecCCcceec-CCcceEEeeccceEEEeecCCCCCeEEEEEEEec
Q psy15390 18 PSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISI-NKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~-~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.....+.+|+.+.|.|.. .+.|.+.+.|++ ++..+.. ....++....++.|.|.+|...|+|.|.|.+.|.
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k-~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLL-NEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEE-CCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEec
Confidence 345678899999999965 557888999999 6654321 1122322333567777777777777777777663
No 96
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.37 E-value=4.4e-12 Score=70.01 Aligned_cols=34 Identities=29% Similarity=0.581 Sum_probs=28.0
Q ss_pred CCceeEEecCCcEEEEEEEec-CCCCeeEEEecCCc
Q psy15390 17 TPSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQ 51 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~-~~~~~~~w~~~~~~ 51 (142)
.+....+.+|++++|.|.+.+ .|.+.+.|++ ++.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~-~~~ 41 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTR-VGG 41 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEE-CCC
Confidence 566778899999999999865 6777899999 554
No 97
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.36 E-value=5.1e-11 Score=67.10 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=59.9
Q ss_pred CCeeeecCCCCceeEEecCCcEEEEEEEecCCCC-eeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEE
Q psy15390 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86 (142)
Q Consensus 8 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~ 86 (142)
||.+. ......+.+|+++.|.|.+.+.|.| .+.|.. .+..+......+ +.|..... +.
T Consensus 2 pP~i~----~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w-~~~~i~~~~~~r--------~~I~~~~~-~~------- 60 (98)
T cd05898 2 PPIIS----SEQVQYAVRGERGKVKCFIGSTPPPDRIAWAW-KENVLESGTSER--------YTVERTST-GS------- 60 (98)
T ss_pred CCEEe----cCceEEEeCCCcEEEEEEEccCCCCcEEEEEE-ccccccCCCCCC--------EEEEEEcc-CC-------
Confidence 67763 4667788899999999999777766 578987 555443221111 22221110 11
Q ss_pred EecCCccEEEEEEEeccccceEEEccCCCCC-CeEEEEEEecCCCCCeeeEEE
Q psy15390 87 TKIGPLKIFWEIIFHMHYGEQLNITKISRTE-MGAYLCIATNNVPPSVSKRIT 138 (142)
Q Consensus 87 ~~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d-~g~y~C~a~n~~~~~~s~~~~ 138 (142)
...+.|.|.++...| .|.|.|.|.|.+|. ....++
T Consensus 61 ----------------g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~-d~~~i~ 96 (98)
T cd05898 61 ----------------GVLSTLTINNIMEADFQTHYNCTAWNSFGS-GTAIIQ 96 (98)
T ss_pred ----------------CcEEEEEECCCccccCCcEEEEEEEeCCcc-ceEEEE
Confidence 113468888887767 78999999999987 344443
No 98
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.34 E-value=8.7e-12 Score=69.65 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=53.3
Q ss_pred CCceeEEecCCcEEEEEE-EecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCe-EEEEEEEec
Q psy15390 17 TPSSVAVREEFNITLTCK-AEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMG-AYLCIATKI 89 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~y~C~~~~~ 89 (142)
..+.+.+.+|+.+.|.|. ..+.|.+.+.|+..+...+. ...|+....++.|.|.+|...|.| .|.|.+.+.
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~--~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT--QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc--ccccEEECCCceEEEEEEehhhCCCCeEEEEEcc
Confidence 456788999999999997 68899999999983323232 234445555678888888888888 788888764
No 99
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.33 E-value=3.2e-11 Score=67.93 Aligned_cols=93 Identities=18% Similarity=0.290 Sum_probs=54.7
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
..+.+.+.+|++++|.|.+.+.+.+.+.|+++++..+..... .....+.|.-.
T Consensus 3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~----------------~~~~~~r~~~~----------- 55 (95)
T cd05717 3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDK----------------RALRDNRIQLV----------- 55 (95)
T ss_pred cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccc----------------cccccCcEEEE-----------
Confidence 355678899999999999988888899999744332211000 00000111000
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
........|.|.+++.+|+|.|+|.+.+.... +..+.|.|
T Consensus 56 ---~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~--~~~~~~~v 95 (95)
T cd05717 56 ---NFSANELSISISNVSLSDEGRYTCSLYTMPVQ--TAKATVTV 95 (95)
T ss_pred ---cCCCCeeEEEEccCCcccCEEEEEEEecCCCc--eEEEEEEC
Confidence 00112335888888888888888888876644 33344443
No 100
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.32 E-value=1.1e-11 Score=64.71 Aligned_cols=60 Identities=22% Similarity=0.547 Sum_probs=40.6
Q ss_pred CCcEEEEEEE-ecCCCCeeEEEecCCcceecCCcceEEeeccc---eEEEeecCCCCCeEEEEEE
Q psy15390 26 EFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGE---QLNITKISRTEMGAYLCIA 86 (142)
Q Consensus 26 g~~v~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~ 86 (142)
|++++|.|.+ .+.+...+.|++ +++................ .|.|.+++.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSK-NGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEE-TTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEE-CCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 667777999999 6555433222121111111 2888888888888888875
No 101
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.32 E-value=9.8e-12 Score=66.91 Aligned_cols=72 Identities=21% Similarity=0.496 Sum_probs=46.4
Q ss_pred EEEEEEEec-CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccce
Q psy15390 29 ITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQ 107 (142)
Q Consensus 29 v~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~ 107 (142)
+.|.|.+.+ .|.+.+.|++ ++..+........ +.+. .......
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~~~~-------~~~~----------------------------~~~~~~~ 44 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNKPRN-------IKIR----------------------------NKKKNSE 44 (75)
T ss_pred CEEEEEccCCCCCceEEEEc-CCeeccccCCcce-------EEEE----------------------------ecCceEE
Confidence 468999999 8999999999 7776643221110 0010 0001234
Q ss_pred EEEccCCCCCCeEEEEEEecCCCCCeeeEE
Q psy15390 108 LNITKISRTEMGAYLCIATNNVPPSVSKRI 137 (142)
Q Consensus 108 l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~ 137 (142)
|.|..+..+|+|.|+|.|.|..|. .+..+
T Consensus 45 L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~ 73 (75)
T cd05750 45 LQINKAKLADSGEYTCVVENILGN-DTVTA 73 (75)
T ss_pred EEEccCCcccCeEEEEEEEEcCCc-eeEEE
Confidence 778888888888888888888876 34433
No 102
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.31 E-value=2.5e-11 Score=62.56 Aligned_cols=60 Identities=37% Similarity=0.741 Sum_probs=41.7
Q ss_pred cCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 25 EEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 25 ~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
+|++++|.|.+.+.+.+.+.|++ ++..+. . ... .......|.|.++...|+|.|.|.+.+
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~-~-~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLK-DGKPLP-E-SNR-LSASGSTLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEE-CCEECC-C-CCE-EecCCcEEEEeeCCcccCEEEEEEEec
Confidence 48899999998888888999999 666554 1 111 123344677777777777777777654
No 103
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.30 E-value=3.8e-11 Score=65.15 Aligned_cols=32 Identities=38% Similarity=0.848 Sum_probs=27.4
Q ss_pred eEEecCCcEEEEEEEecCCCCeeEEEecCCcce
Q psy15390 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPI 53 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~ 53 (142)
..+.+|+++.|.|.+.+.|...+.|++ ++..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~ 40 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPI 40 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEE-TTEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeee-eeeee
Confidence 568899999999999988888999999 66554
No 104
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.29 E-value=1.6e-11 Score=68.60 Aligned_cols=63 Identities=17% Similarity=0.400 Sum_probs=37.8
Q ss_pred eEEecCCcEEEEEEEec-----CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEE
Q psy15390 21 VAVREEFNITLTCKAEG-----FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 87 (142)
..+.+|+++.|.|...+ .|.+.+.|++ +++++..... + ...++.|.|.++..+|+|.|+|.+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~~~~~-~--~~~~~~L~I~~v~~~DsG~YtC~~~ 72 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEGDRK-R--FVKGSKLLIQNVTEEDAGNYTCKLT 72 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeE-CCEECCCCcc-E--EecCCEEEEeeCChhhCEEEEEEEE
Confidence 35778999999998644 2467899999 8887654321 1 1133344444444444444444443
No 105
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.29 E-value=3e-11 Score=67.62 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=50.3
Q ss_pred eEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEE
Q psy15390 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIF 100 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~ 100 (142)
+.+.+|++|+|+|.+.+.+.+.+.|++ +++....+...++ .+..... ..+.... ....
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~-~~~k~~~g~~~~l--------~~~~~~~-----------~~~r~~~--~~~~ 59 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKN-SNQIKILGNQGSF--------LTKGPSK-----------LNDRADS--RRNL 59 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEE-CCcEEccCcCCEE--------EEecccc-----------cCCCCce--eccc
Confidence 357789999999999988888999997 4432222211221 1100000 0000000 0000
Q ss_pred eccccceEEEccCCCCCCeEEEEEEecCCCC
Q psy15390 101 HMHYGEQLNITKISRTEMGAYLCIATNNVPP 131 (142)
Q Consensus 101 ~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~ 131 (142)
.......|.|.++..+|+|+|.|.+.|..+.
T Consensus 60 ~~~g~~~L~I~~l~~sDsgtY~C~v~~~~~~ 90 (94)
T cd07690 60 WDQGSFPLIIKNLKIEDSDTYICEVEDKKEE 90 (94)
T ss_pred CCCCeEEEEECCCCHHHCEEEEEEECCccce
Confidence 0112335888888888888888888887653
No 106
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.28 E-value=1.1e-10 Score=65.43 Aligned_cols=73 Identities=16% Similarity=0.288 Sum_probs=44.9
Q ss_pred CceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecC-----CcceEEeec--c--ceEEEeecCCCCCeEEEEEEEe
Q psy15390 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISIN-----KRKKVHMHY--G--EQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~-----~~~~~~~~~--~--~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
.+++.+.+|+++.|.|.+.+.....+.|++.+...+... ...|+.... + .+|.|.+++.+|+|.|.|++..
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 456789999999999999988777789998543332110 111111111 1 1466666666666666666654
Q ss_pred cC
Q psy15390 89 IG 90 (142)
Q Consensus 89 ~~ 90 (142)
.+
T Consensus 84 ~p 85 (95)
T cd05881 84 DP 85 (95)
T ss_pred cc
Confidence 43
No 107
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.28 E-value=2.6e-11 Score=65.45 Aligned_cols=73 Identities=21% Similarity=0.497 Sum_probs=44.2
Q ss_pred EEEEEEEec-CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccce
Q psy15390 29 ITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQ 107 (142)
Q Consensus 29 v~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~ 107 (142)
+.|.|.+.+ .|.+.+.|++ +++.+......+ ....+. .......
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~~~~~~------~~~~~~----------------------------~~~~~~~ 45 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFK-NGKEIGAKNKPD------NKIKIR----------------------------KKKKSSE 45 (76)
T ss_pred CEEEEecccCCCCCceEEEE-CCcccccCCCCC------ceEEEE----------------------------eCCcEEE
Confidence 468999864 6778999999 777664321110 000000 0111235
Q ss_pred EEEccCCCCCCeEEEEEEecCCCCCeeeEE
Q psy15390 108 LNITKISRTEMGAYLCIATNNVPPSVSKRI 137 (142)
Q Consensus 108 l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~ 137 (142)
|.|.++..+|+|.|+|.|.|..|. .+.++
T Consensus 46 L~I~~~~~~DsG~Y~C~a~N~~g~-~~~~~ 74 (76)
T cd05895 46 LQISKASLADNGEYKCMVSSKLGN-DSVTA 74 (76)
T ss_pred EEECcCCcccCEEEEEEEEeCCCc-eeEEE
Confidence 777788888888888888888775 44443
No 108
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.23 E-value=8e-11 Score=62.47 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.0
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
..|.|.++..+|+|.|+|.+.|..
T Consensus 34 ~~L~I~~v~~~D~G~YtC~a~N~~ 57 (70)
T cd05864 34 VHLTIYEVTEKDAGNYTVVLTNPI 57 (70)
T ss_pred CEEEECcCCHHHCEEEEEEEEECC
Confidence 037788899999999999888853
No 109
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.22 E-value=1.7e-10 Score=64.41 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.7
Q ss_pred ceeEEecCCcEEEEEEEecCCCCeeEEEe
Q psy15390 19 SSVAVREEFNITLTCKAEGFPAPEIKWRR 47 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~~~~~~~~~w~~ 47 (142)
..+...+|+++.|.|.. +.|.+.+.||+
T Consensus 4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wyk 31 (91)
T cd05871 4 KVVYGVENNSTFLECLP-KSPQASVKWLF 31 (91)
T ss_pred eEEEEecCCcEEEEEEC-CCCCceEEEEE
Confidence 35678899999999996 47888999998
No 110
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.19 E-value=1.4e-09 Score=59.21 Aligned_cols=83 Identities=28% Similarity=0.538 Sum_probs=52.2
Q ss_pred eeEEecCCcEEEEEEEecCCCCeeEEEecC-CcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEE
Q psy15390 20 SVAVREEFNITLTCKAEGFPAPEIKWRRED-NQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEI 98 (142)
Q Consensus 20 ~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~ 98 (142)
.+.+..|+++.|.|.+.+.+.+.+.|++ + +..+.... +......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~v~~~~--~~~~~~~-------------------------------- 47 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYK-QGGKLLAESG--RFSVSRS-------------------------------- 47 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEE-CCCEEcCCCC--cEEEEEc--------------------------------
Confidence 4567889999999999888778999999 5 44432111 1000000
Q ss_pred EEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 99 IFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 99 ~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.....|.|.++...|+|.|+|.+.+..+.. ...+.|.|+
T Consensus 48 ----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V~ 86 (86)
T smart00410 48 ----GSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTVL 86 (86)
T ss_pred ----CCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEEC
Confidence 002247777777777788888887666653 333666653
No 111
>smart00409 IG Immunoglobulin.
Probab=99.19 E-value=1.4e-09 Score=59.21 Aligned_cols=83 Identities=28% Similarity=0.538 Sum_probs=52.2
Q ss_pred eeEEecCCcEEEEEEEecCCCCeeEEEecC-CcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEE
Q psy15390 20 SVAVREEFNITLTCKAEGFPAPEIKWRRED-NQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEI 98 (142)
Q Consensus 20 ~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~ 98 (142)
.+.+..|+++.|.|.+.+.+.+.+.|++ + +..+.... +......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~v~~~~--~~~~~~~-------------------------------- 47 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYK-QGGKLLAESG--RFSVSRS-------------------------------- 47 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEE-CCCEEcCCCC--cEEEEEc--------------------------------
Confidence 4567889999999999888778999999 5 44432111 1000000
Q ss_pred EEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 99 IFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 99 ~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.....|.|.++...|+|.|+|.+.+..+.. ...+.|.|+
T Consensus 48 ----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V~ 86 (86)
T smart00409 48 ----GSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTVL 86 (86)
T ss_pred ----CCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEEC
Confidence 002247777777777788888887666653 333666653
No 112
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.19 E-value=1.4e-10 Score=64.93 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=41.3
Q ss_pred EEecCCcEEEEEEE-e----cCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 22 AVREEFNITLTCKA-E----GFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 22 ~~~~g~~v~l~C~~-~----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
.+..|.+..|.|+- . ..+.+.+.||+ ++.++...............|.|.+|..+|+|.|+|.+.+
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYK-DSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEcc-CCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEE
Confidence 46678999999972 2 23556899999 8887754332221112234566666666666666666554
No 113
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.17 E-value=3.7e-09 Score=59.47 Aligned_cols=90 Identities=22% Similarity=0.370 Sum_probs=62.3
Q ss_pred CceeEEecCCcEEEEEEEecCCCCe-eEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 18 PSSVAVREEFNITLTCKAEGFPAPE-IKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
...+.+.+|+++.|.|.+.+.|.|. +.|.+ ++..+...... ... ..+.++|.
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~-~~~~l~~~~~~--------~~~-----~~~~~~~r------------- 62 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIY-MNRTLTNTSDH--------YVK-----SRNESNNR------------- 62 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEc-CCcccCccccc--------eeE-----EeccCceE-------------
Confidence 3467899999999999999999997 99998 66654322110 000 00111111
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
..+.|.+.+++.+|.|.|+|.|.|.... .+.++.|.|+
T Consensus 63 -------Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~-~s~tF~l~v~ 100 (101)
T cd05860 63 -------YVSELHLTRLKGTEGGTYTFLVSNSDAS-ASVTFNVYVN 100 (101)
T ss_pred -------EEEEEEEeecChhhCcEEEEEEECCCCe-EEEEEEEEEe
Confidence 1235888899999999999999998875 6777777764
No 114
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.17 E-value=3.9e-10 Score=60.07 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=18.3
Q ss_pred ceEEEeecCCCCCeEEEEEEEec
Q psy15390 67 EQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
..|.|.++..+|+|.|+|.+.|.
T Consensus 35 ~~L~I~~v~~~D~G~YtC~a~N~ 57 (71)
T cd04976 35 HSLTIKDVTEEDAGNYTVVLTNK 57 (71)
T ss_pred CEEEECcCCHHHCEEEEEEEEcC
Confidence 03778888899999999988874
No 115
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.16 E-value=3.6e-10 Score=59.84 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=16.1
Q ss_pred EEEeecCCCCCeEEEEEEEec
Q psy15390 69 LNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~ 89 (142)
|.|.++..+|+|.|.|.+.|.
T Consensus 38 L~I~~~~~~D~G~Y~C~a~N~ 58 (69)
T cd05746 38 LAIRDVGVADQGRYECVARNT 58 (69)
T ss_pred EEECcCChhhCEEEEEEEECC
Confidence 677778888888888877765
No 116
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.16 E-value=2.2e-10 Score=74.08 Aligned_cols=68 Identities=15% Similarity=0.300 Sum_probs=51.4
Q ss_pred ceeEEecCCcEEEEEEEec-----CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 19 SSVAVREEFNITLTCKAEG-----FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
....+.+|+++.|.|.+.+ .|.+.+.|++ +++.+....+..+ ...++.|.|.+++.+|+|.|+|.+..
T Consensus 137 ~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~~~~r~~~-~~~~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 137 INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK-NGNIVLYTDRIQL-RNNNSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred ccceEecCCCEEEEeeCCCCccccCCCceEEEEE-CCEECCCCCCEEE-eCCCCEEEECcCCHHhCEEEEEEEEE
Confidence 3456778999999999753 3567999999 8888764432221 12345899999999999999998864
No 117
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.14 E-value=1.3e-09 Score=58.91 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=15.9
Q ss_pred EEEeecCCCCCeEEEEEEEec
Q psy15390 69 LNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~ 89 (142)
|.|.++..+|+|.|.|.+.|.
T Consensus 40 L~I~~~~~~D~G~Y~C~a~N~ 60 (77)
T cd05760 40 LTLRSAGPDDSGLYYCCAHNA 60 (77)
T ss_pred EEEeeCCcccCEEEEEEEEeC
Confidence 677777777788888877764
No 118
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.12 E-value=1.6e-09 Score=59.79 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=27.1
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+.|.|.+++.+|+|.|+|.|.|..+. ......|.|
T Consensus 50 s~L~I~~~~~~DsG~Y~C~a~n~~~~-~~~~t~~~V 84 (86)
T cd05862 50 STLTIENVTLSDLGRYTCTASSGQMI-AKNSTIVIV 84 (86)
T ss_pred eEEEEecCCcccCEEEEEEEeecceE-ecccEEEEE
Confidence 35888888999999999999988774 556666655
No 119
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.11 E-value=6.6e-09 Score=60.07 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
...+|.|.+++.+|+|+|+|.+.+.... -+..+.|.|+
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~-~~~~v~l~v~ 109 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIED-NYDTVEVQVK 109 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCC-ceeEEEEEEE
Confidence 4567999999999999999999977665 4667777764
No 120
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.09 E-value=1.2e-08 Score=59.41 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=60.2
Q ss_pred CCceeEEecCCcEEEEEEEecCC----CCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCc
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFP----APEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPL 92 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~ 92 (142)
.+..+.+..|+++.|.|...... ...+.|....... .....+....++.... .+.|.|.=
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~---~~~~~v~~y~~g~~~~-----~~~~~f~~-------- 67 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGS---RDAISIFHYGKGQPYI-----DDVGPFKE-------- 67 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCC---CccEEEEEeCCCceec-----ccccCccC--------
Confidence 45567888999999999987643 3479994412110 0111111222211110 01111111
Q ss_pred cEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCC-CeeeEEEEEE
Q psy15390 93 KIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPP-SVSKRITVDV 141 (142)
Q Consensus 93 ~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~-~~s~~~~l~V 141 (142)
.+.|.... ...+.++.|.+++.+|+|+|+|.+.|.+.. .....+.|.|
T Consensus 68 Rv~f~g~~-~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 68 RIEWVGNP-SRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred ceEEeCCC-CcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 23333222 234568999999999999999999998763 2234555544
No 121
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.08 E-value=1.4e-09 Score=59.32 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=18.5
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.++...|+|.|+|.+.|..
T Consensus 47 ~L~I~~~~~~D~G~YtC~A~N~~ 69 (81)
T cd04971 47 CLQFDNPTHVNNGNYTLVASNEY 69 (81)
T ss_pred EEEECCCCcccCeEEEEEEEeCC
Confidence 47888888888888888888753
No 122
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.07 E-value=4.7e-10 Score=59.96 Aligned_cols=74 Identities=32% Similarity=0.614 Sum_probs=43.8
Q ss_pred CCeeeecCCCCceeEEecCCcEEEEEEEecCC-CCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEE
Q psy15390 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFP-APEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86 (142)
Q Consensus 8 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~ 86 (142)
+|.+.. .+.......+. +.|.|.+.+.+ .+.+.|+. ...... ..........+.|.|.++..+|.|.|+|.+
T Consensus 1 kP~I~~---~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~-~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 1 KPQISV---PPPPVVTSGGS-VTLTCSAEGGPPPPSISWYD-SNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIA 73 (75)
T ss_dssp ESEEEE---ESTSEEETTEE-EEEEEEESSEESSEEEEEET-EEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEE
T ss_pred CCEEEE---cCCCcEeecee-EEEEEEEccccCCeEEEEEe-cCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEE
Confidence 356555 34444443333 99999998877 67899991 111000 011112233456788888888888888877
Q ss_pred Ee
Q psy15390 87 TK 88 (142)
Q Consensus 87 ~~ 88 (142)
.|
T Consensus 74 ~N 75 (75)
T PF13927_consen 74 SN 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 65
No 123
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=6.8e-09 Score=56.78 Aligned_cols=80 Identities=29% Similarity=0.406 Sum_probs=47.7
Q ss_pred cEEEEEEEec-CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccc
Q psy15390 28 NITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGE 106 (142)
Q Consensus 28 ~v~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~ 106 (142)
.+.|.|.+.+ .|.+.+.|++ +|+.+....... . + ..+.+.|.- .+
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~-~g~~l~~~~~~~-~-----------~-~~~~~~~~~--------------------~s 46 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFR-DGEVLDGATYSK-E-----------L-LKDGKRETT--------------------VS 46 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEE-CCEEccCceeee-e-----------E-ecCCCeEEE--------------------EE
Confidence 3689999987 5778999999 887664221000 0 0 001111110 12
Q ss_pred eEEEccCCCCCCeEEEEEEecCCCC-CeeeEEEEEE
Q psy15390 107 QLNITKISRTEMGAYLCIATNNVPP-SVSKRITVDV 141 (142)
Q Consensus 107 ~l~i~~~~~~d~g~y~C~a~n~~~~-~~s~~~~l~V 141 (142)
.|.+......|.|.|+|.|.|...+ .+..+++|+|
T Consensus 47 ~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 47 TLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred EEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence 3666666666778999999886533 4667777765
No 124
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.05 E-value=2.6e-09 Score=61.56 Aligned_cols=103 Identities=18% Similarity=0.290 Sum_probs=57.2
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEE
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFW 96 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w 96 (142)
.+..+.+.+|++++|.|...+.+...+.|++.. .. ............. .....+.+.....
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~-~~--~~~~~l~~~~~~~-------~~~~~~r~~~~~~--------- 64 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQY-PG--QGPQFLIYISSNG-------EEKEKGRFSATLD--------- 64 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEEC-CC--CCeEEEEEEecCC-------CcccCCcEEEEEc---------
Confidence 566788999999999999987777789999832 10 0000000000000 0011121111100
Q ss_pred EEEEeccccceEEEccCCCCCCeEEEEEEecCCCC---CeeeEEEEEEC
Q psy15390 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPP---SVSKRITVDVE 142 (142)
Q Consensus 97 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~---~~s~~~~l~V~ 142 (142)
.......|.|.+++.+|+|.|.|.+.+..+. .......|.|+
T Consensus 65 ----~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~~~~~~~g~gt~l~V~ 109 (109)
T cd04983 65 ----KSRKSSSLHISAAQLSDSAVYFCALSESGGTGKLTFGKGTRLTVE 109 (109)
T ss_pred ----ccCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEECCCEEEEEC
Confidence 0112346899999999999999999876431 12334455554
No 125
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.05 E-value=1.3e-09 Score=60.82 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=28.3
Q ss_pred CCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcce
Q psy15390 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPI 53 (142)
Q Consensus 8 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~ 53 (142)
+|.+.. .+. ..+.+|++|+|.|... .+...+.|++ +|...
T Consensus 2 kP~L~a---~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k-~g~~~ 41 (91)
T cd05751 2 KPSLWA---EPS-SVVPLGKPVTLRCQGP-YGAVEYRLYR-EGSTF 41 (91)
T ss_pred CCEEEe---cCC-CccCCCCcEEEEEecC-CCCCEEEEEE-CCCCc
Confidence 455555 443 3678999999999875 5556788888 77653
No 126
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.04 E-value=2.3e-08 Score=57.33 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=31.7
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
...+|.|.+++.+|+|.|.|.+.+..+. ....+.|.|.
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~-~~~~v~L~V~ 103 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIED-EQDTVELEVR 103 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEE
Confidence 4568999999999999999999987664 5778887773
No 127
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.03 E-value=2.1e-09 Score=58.96 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=46.6
Q ss_pred CceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEE
Q psy15390 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 87 (142)
.+.+.+.+|+++.|.|...+. .+.+.|+. ++..+..+ .++.... ..|.|.+++..|+|.|.|.+.
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~~--~r~~~~~-~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNAQ--FSYRVGT-DGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred ceEEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCCC--cceEEeC-CCCEEEECCHhhCEEEEEEEe
Confidence 456789999999999998765 55899999 77776543 2222222 236677788888888888765
No 128
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.02 E-value=5.1e-09 Score=60.48 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=26.6
Q ss_pred CCceeEEecCCcEEEEEEEecCCCCeeEEEec
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRRE 48 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~ 48 (142)
.+..+.+.+|++++|.|...+ +...+.||+.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq 34 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ 34 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence 567788999999999999877 6668999993
No 129
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.01 E-value=1.3e-08 Score=58.34 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=31.1
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
..+|.|.+++.+|+|+|.|.+.+..+. ....+.|.|+
T Consensus 67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~-~~~~~~l~v~ 103 (106)
T cd05877 67 DASLVITDLRLEDYGRYRCEVIDGLED-ESVVVALRLR 103 (106)
T ss_pred cEEEEEccCChHHCEEEEEEEEecccc-eEEEEEEEEE
Confidence 457999999999999999999988775 6777877773
No 130
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.01 E-value=3e-09 Score=57.60 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=48.3
Q ss_pred EEEEEEEec-CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEEEEEeccccce
Q psy15390 29 ITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQ 107 (142)
Q Consensus 29 v~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~ 107 (142)
+.|.|...+ .|++.+.||+ +++.+..... ...+.+.|+ ..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~~~----------------~~~~~~~~t--------------------~~s~ 44 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYR-DRKELKGVIS----------------QQENGKTVS--------------------VSNT 44 (80)
T ss_pred EEEEEeCCCccCCCeEEEEE-CCEECCCCcc----------------cccCCceEE--------------------EEEE
Confidence 689999755 7888999999 8887743210 001111222 1234
Q ss_pred EEEccCCCCCCeEEEEEEecCCCC--CeeeEEEEEE
Q psy15390 108 LNITKISRTEMGAYLCIATNNVPP--SVSKRITVDV 141 (142)
Q Consensus 108 l~i~~~~~~d~g~y~C~a~n~~~~--~~s~~~~l~V 141 (142)
|.+......|.+.|+|+|.|..++ .......|+|
T Consensus 45 L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V 80 (80)
T cd05885 45 IRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV 80 (80)
T ss_pred EEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence 777777777888999999987665 2445555554
No 131
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.01 E-value=1.5e-08 Score=57.47 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=30.5
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
..+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence 457999999999999999999987765 677777776
No 132
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.00 E-value=3.2e-08 Score=57.17 Aligned_cols=37 Identities=16% Similarity=0.437 Sum_probs=28.9
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
...+|.|.+++.+|+|+|.|.+...... ....++|.|
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~-~~~~v~l~V 106 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIED-EQDTVPLEV 106 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCc-ceEEEEEEE
Confidence 4567999999999999999999875443 456666665
No 133
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.00 E-value=3.1e-09 Score=60.75 Aligned_cols=101 Identities=11% Similarity=0.015 Sum_probs=54.0
Q ss_pred CceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEEEE
Q psy15390 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWE 97 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~w~ 97 (142)
+.+..+.+|+++.|.|.........+.||+ +.... ....+.......-. ...-....|
T Consensus 5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~k-g~~~~---~~~~I~~y~~~~~~-~~~gp~~~g----------------- 62 (105)
T cd05774 5 LVPPQVAEGENVLLLVHNLPENLLAYAWYK-GKTVS---PNFLIASYIISTNS-STPGPAYSG----------------- 62 (105)
T ss_pred ccCCcccCCCCEEEEecCCCCCceEEEEEc-CCCCC---CCEEEEEEECCCcc-cccCcccCC-----------------
Confidence 344567889999999976544444799999 32211 00011011000000 000001111
Q ss_pred EEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 98 IIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 98 ~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+.....+++|.|.+++.+|+|.|+|.+.+.-.......+.|.|
T Consensus 63 -R~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 63 -RETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred -cEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 1222335578888888888888888888766444455565554
No 134
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.97 E-value=1.5e-08 Score=56.55 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=30.3
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+.+|.|.+++.+|+|.|+|.+....+......+.|.|
T Consensus 56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 56 NGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV 92 (92)
T ss_pred CceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence 3679999999999999999998877766777777765
No 135
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.97 E-value=6.6e-08 Score=56.37 Aligned_cols=108 Identities=15% Similarity=0.207 Sum_probs=55.8
Q ss_pred CCceeEEecCCcEEEEEEEecCC----CCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCc
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFP----APEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPL 92 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~ 92 (142)
.|..+.+.+|++++|.|...... ...+.|++.... ......+.....+... ....+.|.=
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~---~~~~~~v~~~~~~~~~-----~~~~~~~~~-------- 67 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEG---SGDTESIFHYHKGPYY-----PLKDGRFKD-------- 67 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCC---CCCcEEEEEEcCCccc-----cccCccccC--------
Confidence 46667888999999999886532 245899872210 0000010111110000 001111111
Q ss_pred cEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCC-eeeEEEEEE
Q psy15390 93 KIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPS-VSKRITVDV 141 (142)
Q Consensus 93 ~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~-~s~~~~l~V 141 (142)
.+.+.. .......+|.|.+++.+|+|.|.|.+.|.+... -+..+.|.|
T Consensus 68 R~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 68 RVEWVG-NPSRKDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred cEEEec-CCcCCeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 111110 011224568999999999999999999876531 123455554
No 136
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.96 E-value=4.8e-08 Score=56.03 Aligned_cols=32 Identities=22% Similarity=0.487 Sum_probs=26.0
Q ss_pred CCceeEEecCCcEEEEEEEecCC-CCeeEEEec
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFP-APEIKWRRE 48 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~-~~~~~w~~~ 48 (142)
.|..+.+.+|++++|.|.+.+.. ...+.||+.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 56677899999999999987654 457999983
No 137
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.95 E-value=6.5e-09 Score=58.68 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=23.6
Q ss_pred ceeEEecCCcEEEEEEEe-----------cCCCCeeEEEecCCcce
Q psy15390 19 SSVAVREEFNITLTCKAE-----------GFPAPEIKWRREDNQPI 53 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~-----------~~~~~~~~w~~~~~~~~ 53 (142)
....+.+|+.+.|.|..- ......+.||+ ++..+
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK-~~~~~ 52 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYK-SSGDG 52 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEE-CCCCC
Confidence 346788999999999851 11233789999 65433
No 138
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.93 E-value=1.6e-08 Score=57.14 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=31.8
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
..+|.|.+++.+|+|.|.|.+.+..+......+.|.|
T Consensus 60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 4679999999999999999999888777777777776
No 139
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.92 E-value=4.7e-08 Score=55.18 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=32.9
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
...+|.|.+++.+|+|.|+|.....+....+..+.|+|+
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence 356799999999999999999987765567888888884
No 140
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.92 E-value=2e-08 Score=53.07 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=43.1
Q ss_pred CeEEEEEEEecCCccEEEEEEEec--------cccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 79 MGAYLCIATKIGPLKIFWEIIFHM--------HYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 79 ~G~y~C~~~~~~~~~~~w~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
.-...|.+...|.|.+.|.+.... .....|.|.++ .|+|.|+|.|.|..|. +...+.|
T Consensus 3 ~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~-~~~~a~l 68 (69)
T cd05739 3 SVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGM-IEATAQV 68 (69)
T ss_pred eEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCE-EEEEEEE
Confidence 346799999999999999764211 12345777776 4899999999999996 6666654
No 141
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.91 E-value=1.2e-08 Score=54.35 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=39.3
Q ss_pred EEEEEEecCCccEEEEEEEec---------cccceEEEccCCCCCCeEEEEEEecCCC
Q psy15390 82 YLCIATKIGPLKIFWEIIFHM---------HYGEQLNITKISRTEMGAYLCIATNNVP 130 (142)
Q Consensus 82 y~C~~~~~~~~~~~w~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~a~n~~~ 130 (142)
+.|.+...|.|.+.|.+.... ....+|.|.++..+|+|.|+|.|.|...
T Consensus 3 l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 3 LTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred EEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcccc
Confidence 579999999999999754211 1244799999999999999999999743
No 142
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.91 E-value=3.8e-08 Score=57.31 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=56.2
Q ss_pred CCceeEEecCCcEEEEEEEecCC----CCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCc
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFP----APEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPL 92 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~ 92 (142)
.+..+.+.+|++++|.|.....+ ...+.|++..... .....+...... ......+.|.=++
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~---~~~~~v~~~~~~------~~~~~~~~f~~R~------ 68 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDG---GREESVFYYHKR------PYPPPDGRFKGRV------ 68 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCC---CceeEEEEECCC------ccccCcccccCeE------
Confidence 46678899999999999986533 2358998621000 000000000000 0011112221111
Q ss_pred cEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCC-CeeeEEEEEE
Q psy15390 93 KIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPP-SVSKRITVDV 141 (142)
Q Consensus 93 ~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~-~~s~~~~l~V 141 (142)
.+.. .......+|.|.+++.+|+|.|+|.+.|.+.. ...-.+.|.|
T Consensus 69 --~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 69 --VWDG-NIMRRDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred --EEec-CCcCCceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 1111 01233557999999999999999999987664 1233444443
No 143
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.90 E-value=2.2e-08 Score=58.38 Aligned_cols=32 Identities=31% Similarity=0.665 Sum_probs=26.8
Q ss_pred CCceeEEecCCcEEEEEEEec--CCCCeeEEEec
Q psy15390 17 TPSSVAVREEFNITLTCKAEG--FPAPEIKWRRE 48 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~--~~~~~~~w~~~ 48 (142)
.+..+.+.+|++++|.|...+ .+.+.+.||+.
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 566778899999999999877 56678999993
No 144
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.89 E-value=1.4e-08 Score=57.95 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=22.5
Q ss_pred EEecCCcEEEEEEEecC-CCCeeEEEec
Q psy15390 22 AVREEFNITLTCKAEGF-PAPEIKWRRE 48 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~-~~~~~~w~~~ 48 (142)
.+.+|++++|.|..... +...+.|++.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~ 29 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQ 29 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEE
Confidence 56789999999999876 5668999983
No 145
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.88 E-value=9.8e-08 Score=53.86 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=30.5
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
...+|.|.+++.+|+|.|.|.+.+.+.......+.|.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 45679999999999999999998755434677777776
No 146
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.87 E-value=1.2e-07 Score=53.21 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=32.2
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
...+|.|.+++.+|+|.|+|.+.+.+..+.+..+.|.|
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 35689999999999999999998877666777888876
No 147
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.87 E-value=1.3e-08 Score=55.09 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=48.9
Q ss_pred cCCCCCeEEEEEEEecCC-ccEEEEEEEec--cccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 74 ISRTEMGAYLCIATKIGP-LKIFWEIIFHM--HYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 74 v~~~d~G~y~C~~~~~~~-~~~~w~~~~~~--~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+...|.-...|.+...+. ..+.|.+.... .....|.|.++ .+|+|.|+|.|.|. ..|..+.|+|
T Consensus 12 v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~V 78 (78)
T cd05752 12 IFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLEV 78 (78)
T ss_pred eeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEeC
Confidence 445677778999887654 56999876443 35678999999 99999999999975 3577777765
No 148
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.84 E-value=2.4e-08 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=16.8
Q ss_pred eEEEeecCCCCCeEEEEEEEec
Q psy15390 68 QLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.|.|.++..+|+|.|.|.+.|.
T Consensus 44 ~L~I~~~~~~D~G~Y~C~a~N~ 65 (75)
T cd05750 44 ELQINKAKLADSGEYTCVVENI 65 (75)
T ss_pred EEEEccCCcccCeEEEEEEEEc
Confidence 5777778888888888877764
No 149
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.84 E-value=2.1e-07 Score=52.84 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=32.4
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
...+|.|.+++.+|+|+|.|.+.+.++...+..+.|.|.
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V~ 100 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTVW 100 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEeC
Confidence 356799999999999999999998665556778888873
No 150
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.84 E-value=2.4e-08 Score=56.06 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=27.2
Q ss_pred CCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcc
Q psy15390 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQP 52 (142)
Q Consensus 8 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~ 52 (142)
+|.+.+ .+ ...+.+|++|+|.|.... ....+.|++ +|..
T Consensus 1 kP~l~a---~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k-~g~~ 39 (94)
T cd05711 1 KPFLSA---HP-SPVVPSGENVTLQCHSDI-RFDRFILYK-EGRS 39 (94)
T ss_pred CCEEEe---cC-CCccCCCCeEEEEEecCC-CCCEEEEEE-CCCC
Confidence 356655 33 445779999999998754 445788999 5554
No 151
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.83 E-value=2.6e-08 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.9
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
+.|.|.+++..|+|.|+|.+.|..
T Consensus 44 ~~L~I~~~~~~DsG~Y~C~a~N~~ 67 (76)
T cd05895 44 SELQISKASLADNGEYKCMVSSKL 67 (76)
T ss_pred EEEEECcCCcccCEEEEEEEEeCC
Confidence 468999999999999999998754
No 152
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.83 E-value=5.3e-07 Score=52.31 Aligned_cols=38 Identities=21% Similarity=0.464 Sum_probs=30.7
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
...+|.|.+++.+|+|.|.|++...... ....+.|.|+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 4567999999999999999999987664 5667777663
No 153
>PHA03376 BARF1; Provisional
Probab=98.82 E-value=3.6e-07 Score=56.66 Aligned_cols=118 Identities=16% Similarity=0.083 Sum_probs=66.2
Q ss_pred CceeEEecCCcEEEEEEEecC---CCCeeEEEecCCc-----cee----------cCCcceEEe---eccceEEEeecCC
Q psy15390 18 PSSVAVREEFNITLTCKAEGF---PAPEIKWRREDNQ-----PIS----------INKRKKVHM---HYGEQLNITKISR 76 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~---~~~~~~w~~~~~~-----~~~----------~~~~~~~~~---~~~~~l~i~~v~~ 76 (142)
...+.+..|+++.|+|.-... ..-.|.|++ ++. .+. ...+.+..+ ..+-+|.|.+++.
T Consensus 18 g~pVta~VGEda~LsC~lnp~ssa~~MrIrWqK-s~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~l 96 (221)
T PHA03376 18 GQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFK-LGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI 96 (221)
T ss_pred CcchhheeCCcEEEEecccCccCCCceEEEEEe-cCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeee
Confidence 346678889999999997632 233689999 321 111 112233333 2223699999999
Q ss_pred CCCeEEEEEEEecCCccEEEEEEEeccccceEEEcc---CCC-CCCeEEEEEEecCCCCCeeeEE
Q psy15390 77 TEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITK---ISR-TEMGAYLCIATNNVPPSVSKRI 137 (142)
Q Consensus 77 ~d~G~y~C~~~~~~~~~~~w~~~~~~~~~~~l~i~~---~~~-~d~g~y~C~a~n~~~~~~s~~~ 137 (142)
+|+|.|+|..+....- .+-.........-.|.+.. ... .+--+.+|.+.+.+.+..+|-.
T Consensus 97 SDdGtY~C~fQkge~~-~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle 160 (221)
T PHA03376 97 SHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLM 160 (221)
T ss_pred cCCceEEEEEEcCCCc-eeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecc
Confidence 9999999998864321 1111111111111233322 011 2344789995556666777743
No 154
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.81 E-value=1.2e-07 Score=54.64 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=25.6
Q ss_pred CCceeEEecCCcEEEEEEEe-cCCCCeeEEEe
Q psy15390 17 TPSSVAVREEFNITLTCKAE-GFPAPEIKWRR 47 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~-~~~~~~~~w~~ 47 (142)
.+..+.+.+|+++.|.|... ......+.|++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~ 38 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYR 38 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEE
Confidence 36678899999999999998 44555799998
No 155
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.80 E-value=4e-07 Score=51.52 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=33.1
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.+.+|.|.+++.+|+|.|+|.+.+.+....+..+.|.|.
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence 467899999999999999999999665557888888873
No 156
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.80 E-value=3.1e-08 Score=55.36 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=41.7
Q ss_pred CCCCCeEEEEEEEe-----cCCccEEEEEEEecc--------ccceEEEccCCCCCCeEEEEEEecCCCC
Q psy15390 75 SRTEMGAYLCIATK-----IGPLKIFWEIIFHMH--------YGEQLNITKISRTEMGAYLCIATNNVPP 131 (142)
Q Consensus 75 ~~~d~G~y~C~~~~-----~~~~~~~w~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~a~n~~~~ 131 (142)
.....+...|.... .+.+.+.|.+..... ..+.|.|..+..+|+|.|+|.|.|..+.
T Consensus 8 ~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 8 FSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred eeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 34556677886542 156789997532211 4578999999999999999999998765
No 157
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.79 E-value=2e-07 Score=53.71 Aligned_cols=37 Identities=16% Similarity=0.461 Sum_probs=29.4
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
...+|.|.+++.+|+|.|.|.+...... ....+.|.|
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~-~~~~v~L~V 106 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGIND-EQDTVPLEV 106 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcc-cEEEEEEEE
Confidence 4567999999999999999999975533 466677766
No 158
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.79 E-value=1.1e-07 Score=53.08 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=43.4
Q ss_pred CCeEEEEEEEecCCccEEEEEEEecc----------ccceEEEccCCC-CCCeEEEEEEecCCCCCeee
Q psy15390 78 EMGAYLCIATKIGPLKIFWEIIFHMH----------YGEQLNITKISR-TEMGAYLCIATNNVPPSVSK 135 (142)
Q Consensus 78 d~G~y~C~~~~~~~~~~~w~~~~~~~----------~~~~l~i~~~~~-~d~g~y~C~a~n~~~~~~s~ 135 (142)
......|.+...+.+.++|.+..... ..+.|.|.++.. +|+|.|+|.|.|..|...|.
T Consensus 20 ~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 20 GKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 44678999988889999997632211 235788877764 89999999999999974443
No 159
>KOG3515|consensus
Probab=98.77 E-value=2.8e-08 Score=73.06 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=43.5
Q ss_pred EEecCCcEEEEEEEecCCC-CeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEec
Q psy15390 22 AVREEFNITLTCKAEGFPA-PEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.+.+|++|.|.|.+.+.|+ ..+.|++ +++.+. + +.....+.+|...+..+..-++|.|.+.|+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h-~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns 81 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYH-STSGEH-G---RYATIADPTLVTTGDVRDTVAELNCRAFNS 81 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEe-cCcccc-c---ccccccCCceeeecchhhhhhhhhhhhccc
Confidence 7888999999999987654 4799999 555443 1 111223345666777777777888877765
No 160
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.75 E-value=8.1e-08 Score=54.28 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=21.5
Q ss_pred EEecCCcEEEEEEEecC--CCCeeEEEec
Q psy15390 22 AVREEFNITLTCKAEGF--PAPEIKWRRE 48 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~--~~~~~~w~~~ 48 (142)
.+.+|++++|.|..... ....+.||+.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q 30 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQ 30 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEE
Confidence 46789999999998764 4457999983
No 161
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.75 E-value=7.8e-08 Score=52.88 Aligned_cols=65 Identities=17% Similarity=0.398 Sum_probs=49.7
Q ss_pred cCCCCCeEEEEEEEe-cCCccEEEEEEEe------ccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 74 ISRTEMGAYLCIATK-IGPLKIFWEIIFH------MHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 74 v~~~d~G~y~C~~~~-~~~~~~~w~~~~~------~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
+...+.....|.+.. .+.+.+.|.+... ....+.|.|..+..+|+|.|.|.|.|..|. .+..+.|
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~-~~~~~~l 84 (85)
T cd05754 13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDT-DEATATL 84 (85)
T ss_pred EcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCe-EeEEEEE
Confidence 456777889998864 5778899976321 223568999999999999999999999986 5555544
No 162
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.74 E-value=5.3e-07 Score=55.86 Aligned_cols=30 Identities=23% Similarity=0.667 Sum_probs=24.1
Q ss_pred ceeEEecCCcEEEEEEEe-cCCCCeeEEEec
Q psy15390 19 SSVAVREEFNITLTCKAE-GFPAPEIKWRRE 48 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~-~~~~~~~~w~~~ 48 (142)
..+++.+|++++|.|... +...+++.|++.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~ 53 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKN 53 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEc
Confidence 356889999999999974 445668999983
No 163
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.73 E-value=1.4e-07 Score=53.29 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=21.3
Q ss_pred cCCCCCeEEEEEEEecCCc-cEEEEEEE
Q psy15390 74 ISRTEMGAYLCIATKIGPL-KIFWEIIF 100 (142)
Q Consensus 74 v~~~d~G~y~C~~~~~~~~-~~~w~~~~ 100 (142)
+...+.....|.+...+.+ .+.|.+..
T Consensus 13 ~~~G~~v~L~C~~~g~P~P~~v~W~~~~ 40 (98)
T cd05758 13 AILGDKGRVECFIFSTPPPDRIVWTWKE 40 (98)
T ss_pred EeCCCcEEEEEEEcccCCCCEeEEEECC
Confidence 4567888899999988887 59997643
No 164
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.73 E-value=2.5e-07 Score=51.99 Aligned_cols=66 Identities=12% Similarity=0.234 Sum_probs=48.9
Q ss_pred cCCCCCeEEEEEEEecCCccEEEEE-----------------EEec----cccceEEEccCCCCCCeEEEEEEecCCCCC
Q psy15390 74 ISRTEMGAYLCIATKIGPLKIFWEI-----------------IFHM----HYGEQLNITKISRTEMGAYLCIATNNVPPS 132 (142)
Q Consensus 74 v~~~d~G~y~C~~~~~~~~~~~w~~-----------------~~~~----~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~ 132 (142)
+...++....|.+.+.+.+.+.|.+ .+.. .....|.|.++..+|+|.|+|.+.+.++
T Consensus 9 v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~-- 86 (95)
T cd07701 9 VVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPV-- 86 (95)
T ss_pred EecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecC--
Confidence 4556777889999988888999952 1111 1235789999999999999999998544
Q ss_pred eeeEEEEEE
Q psy15390 133 VSKRITVDV 141 (142)
Q Consensus 133 ~s~~~~l~V 141 (142)
.++...|.|
T Consensus 87 ~~~~~~l~v 95 (95)
T cd07701 87 KTSKAYLTV 95 (95)
T ss_pred ccEEEEEEC
Confidence 366676665
No 165
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.73 E-value=1.7e-07 Score=54.59 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=25.6
Q ss_pred CCceeEEecCCcEEEEEEEecC-CCCeeEEEec
Q psy15390 17 TPSSVAVREEFNITLTCKAEGF-PAPEIKWRRE 48 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~-~~~~~~w~~~ 48 (142)
.+..+.+.+|++|+|+|..... ....+.||+.
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 5667789999999999998753 3457899983
No 166
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.72 E-value=3.9e-07 Score=53.39 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=24.1
Q ss_pred CCceeEEecCCcEEEEEEEecCC------CCeeEEEec
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFP------APEIKWRRE 48 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~------~~~~~w~~~ 48 (142)
.|+.+.+.+|++|+|+|...... ...+.||+.
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq 42 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG 42 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence 56677889999999999875332 235889984
No 167
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.66 E-value=1.2e-07 Score=53.15 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=46.9
Q ss_pred CCCCCeEEEEEE---E--ecCCccEEEEEEEec-----------cccceEEEccCCCCCCeEEEEEEecCCCC---Ceee
Q psy15390 75 SRTEMGAYLCIA---T--KIGPLKIFWEIIFHM-----------HYGEQLNITKISRTEMGAYLCIATNNVPP---SVSK 135 (142)
Q Consensus 75 ~~~d~G~y~C~~---~--~~~~~~~~w~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~a~n~~~~---~~s~ 135 (142)
....+|...|.- . +...+.+.|.+.-.. .....|.|.++..+|+|.|+|.|.+..+. .++.
T Consensus 8 ~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr 87 (95)
T cd05897 8 FTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITR 87 (95)
T ss_pred ccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEE
Confidence 345567778852 1 346678999753221 23457999999999999999999997654 4566
Q ss_pred EEEEEE
Q psy15390 136 RITVDV 141 (142)
Q Consensus 136 ~~~l~V 141 (142)
.+.|.|
T Consensus 88 ~~~l~v 93 (95)
T cd05897 88 IIKLRI 93 (95)
T ss_pred EEEEEE
Confidence 666665
No 168
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.65 E-value=8.2e-07 Score=48.29 Aligned_cols=25 Identities=36% Similarity=0.765 Sum_probs=20.6
Q ss_pred EEEEEEEec-CCCCeeEEEecCCccee
Q psy15390 29 ITLTCKAEG-FPAPEIKWRREDNQPIS 54 (142)
Q Consensus 29 v~l~C~~~~-~~~~~~~w~~~~~~~~~ 54 (142)
+.|.|.+.+ .|.+.|.||+ +++.+.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~ 27 (82)
T cd05883 2 IELNCTAMASKPAATIRWFK-GNKELT 27 (82)
T ss_pred EEEEEEecCCCCCCEEEEEE-CCEECc
Confidence 689999876 6778999999 887764
No 169
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.64 E-value=1.6e-06 Score=49.80 Aligned_cols=27 Identities=30% Similarity=0.599 Sum_probs=21.4
Q ss_pred EEecCCcEEEEEEEecC-CCCeeEEEec
Q psy15390 22 AVREEFNITLTCKAEGF-PAPEIKWRRE 48 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~-~~~~~~w~~~ 48 (142)
.+.+|++++|.|..... ....+.||+.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq 29 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRW 29 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence 57889999999998653 3447999984
No 170
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.61 E-value=5.3e-07 Score=50.29 Aligned_cols=63 Identities=17% Similarity=0.347 Sum_probs=43.9
Q ss_pred CCCeEEEEEEEecCCccEEEEEEE--------------eccccceEEEccCCCCCCeEEEEEEec-CCCCCeeeEEEEEE
Q psy15390 77 TEMGAYLCIATKIGPLKIFWEIIF--------------HMHYGEQLNITKISRTEMGAYLCIATN-NVPPSVSKRITVDV 141 (142)
Q Consensus 77 ~d~G~y~C~~~~~~~~~~~w~~~~--------------~~~~~~~l~i~~~~~~d~g~y~C~a~n-~~~~~~s~~~~l~V 141 (142)
.++-...|... .+.+.++|.+.. .....+.|.|.++..+|+|.|+|.|.| ..+. ....++|.|
T Consensus 11 G~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~~~~~~l~v 88 (91)
T cd05871 11 NNSTFLECLPK-SPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQ-TLAKYTLHV 88 (91)
T ss_pred CCcEEEEEECC-CCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeE-EEEEEEEEE
Confidence 44556788764 677788997521 111245699999999999999999985 5543 445777776
No 171
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.60 E-value=1.7e-06 Score=47.21 Aligned_cols=25 Identities=32% Similarity=0.840 Sum_probs=20.3
Q ss_pred EEEEEEEecC-CCCeeEEEecCCccee
Q psy15390 29 ITLTCKAEGF-PAPEIKWRREDNQPIS 54 (142)
Q Consensus 29 v~l~C~~~~~-~~~~~~w~~~~~~~~~ 54 (142)
+.|.|.+.+. |.+.+.|++ +++.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFK-GDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEE-CCEEcc
Confidence 6899999774 777999999 777663
No 172
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.57 E-value=3.5e-07 Score=51.64 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=21.7
Q ss_pred eEEecCCcEEEEEEEec-CCCCeeEEEec
Q psy15390 21 VAVREEFNITLTCKAEG-FPAPEIKWRRE 48 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~-~~~~~~~w~~~ 48 (142)
+.+.+|++++|.|.... .....+.|++.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~ 30 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKW 30 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECC
Confidence 46788999999998765 34557899983
No 173
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.57 E-value=5.5e-06 Score=46.58 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=27.3
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEE
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRIT 138 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~ 138 (142)
.+.++.|.+++.+|+|.|+|.....+.......+.
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~ 92 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE 92 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence 45679999999999999999999876544444443
No 174
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.56 E-value=3.6e-06 Score=46.09 Aligned_cols=25 Identities=40% Similarity=0.897 Sum_probs=20.6
Q ss_pred EEEEEEEecC-CCCeeEEEecCCccee
Q psy15390 29 ITLTCKAEGF-PAPEIKWRREDNQPIS 54 (142)
Q Consensus 29 v~l~C~~~~~-~~~~~~w~~~~~~~~~ 54 (142)
+.|.|.+.+. |.+.+.|++ +|+.+.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~ 27 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRK-GDQELE 27 (83)
T ss_pred EEEEEEecCccCCCEeEEEE-CCEECC
Confidence 6899999884 777999999 887664
No 175
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.54 E-value=7.2e-07 Score=45.47 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=39.8
Q ss_pred CCeEEEEEEEecCCccEEEEEEE--------eccccceEEEccCCCCCCeEEEEEEecCCC
Q psy15390 78 EMGAYLCIATKIGPLKIFWEIIF--------HMHYGEQLNITKISRTEMGAYLCIATNNVP 130 (142)
Q Consensus 78 d~G~y~C~~~~~~~~~~~w~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~ 130 (142)
+.....|.+...+.+.+.|.+.. .......|.|.++...|+|.|+|.+.|..|
T Consensus 3 ~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 3 QSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred ceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 34557788766777889997532 123456799999999999999999998754
No 176
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.53 E-value=1.1e-06 Score=51.38 Aligned_cols=32 Identities=28% Similarity=0.613 Sum_probs=24.4
Q ss_pred CCceeEEecCCcEEEEEEEecCC--CCeeEEEec
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFP--APEIKWRRE 48 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~--~~~~~w~~~ 48 (142)
.+....+.+|++++|.|...... ...+.||+.
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 45567889999999999876433 346899983
No 177
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.48 E-value=7.3e-06 Score=49.26 Aligned_cols=44 Identities=25% Similarity=0.469 Sum_probs=31.3
Q ss_pred cccCCCeeeecCCCCceeEEecCCcEEEEEEEecC-CC-CeeEEEecCCc
Q psy15390 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PA-PEIKWRREDNQ 51 (142)
Q Consensus 4 ~~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~~~w~~~~~~ 51 (142)
.+..+|.+.. .+......+|+.+.|.|.+.+. |. ..+.|++ ++.
T Consensus 34 ~v~~~P~v~~---~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~ 79 (139)
T cd05771 34 SVSEPPRVRL---SLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR-EPP 79 (139)
T ss_pred EEecCCceEE---eCCCceeecCCcEEEEEEECCCCCCCeEEEEEE-CCC
Confidence 3456777765 4444455578999999999985 43 4799999 654
No 178
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.48 E-value=1.2e-06 Score=50.13 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=21.3
Q ss_pred EEecCCcEEEEEEEecCCCCeeEEEec
Q psy15390 22 AVREEFNITLTCKAEGFPAPEIKWRRE 48 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~~~~~~~w~~~ 48 (142)
.+.+|++|+|.|.........+.||+.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq 28 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQ 28 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEe
Confidence 357899999999986554557999994
No 179
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.46 E-value=2.7e-06 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=13.7
Q ss_pred eEEEeecCCCCCeEEEEEEEec
Q psy15390 68 QLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 63 ~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 63 SISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred EEEEccCCcccCEEEEEEEecC
Confidence 4666666666666666665543
No 180
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.41 E-value=2.9e-06 Score=47.94 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCceeEEecCCcEEEEEEEec-CCCCe--eEEEecCCccee
Q psy15390 17 TPSSVAVREEFNITLTCKAEG-FPAPE--IKWRREDNQPIS 54 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~-~~~~~--~~w~~~~~~~~~ 54 (142)
.+.+..+.+|+.++|.|.+.+ .|.+. +.||+ ++..+.
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~ 46 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLS 46 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcc
Confidence 444445689999999999977 55655 69999 777664
No 181
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.40 E-value=1.1e-06 Score=49.25 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=25.0
Q ss_pred ecCCcEEEEEEEecC-C-CCeeEEEecCCcceec
Q psy15390 24 REEFNITLTCKAEGF-P-APEIKWRREDNQPISI 55 (142)
Q Consensus 24 ~~g~~v~l~C~~~~~-~-~~~~~w~~~~~~~~~~ 55 (142)
..|+.+.|.|.+.+. | ...+.|++ +|..+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~ 43 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLK-NGKELTS 43 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEE-CCEECCC
Confidence 468999999999996 4 35799999 8877643
No 182
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.37 E-value=1.2e-06 Score=48.31 Aligned_cols=54 Identities=17% Similarity=0.375 Sum_probs=39.9
Q ss_pred CCCCCeEEEEEEEecCCccEEEEEEEe---------ccccceEEEccCCCCCCeEEEEEEecCC
Q psy15390 75 SRTEMGAYLCIATKIGPLKIFWEIIFH---------MHYGEQLNITKISRTEMGAYLCIATNNV 129 (142)
Q Consensus 75 ~~~d~G~y~C~~~~~~~~~~~w~~~~~---------~~~~~~l~i~~~~~~d~g~y~C~a~n~~ 129 (142)
...++....|.+.. +.+.+.|.+... ....+.|.|.+++.+|+|.|+|.|.+..
T Consensus 9 ~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 9 KLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 34566678898753 567899976421 1224579999999999999999999764
No 183
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.35 E-value=4.7e-06 Score=45.52 Aligned_cols=61 Identities=25% Similarity=0.438 Sum_probs=39.1
Q ss_pred eEEecCCcEEEEEEEecCCCC--eeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEE
Q psy15390 21 VAVREEFNITLTCKAEGFPAP--EIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 87 (142)
..+..|++++|.|.....+.| .+.|..+.++.... ......+|.+.++...|+|..+|.+.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~------~~~~~ktL~~~qv~~qdSG~WtC~V~ 71 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI------LNQDKKTLNLVQLGPNDSGTWDCIVS 71 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee------ccCCccEEEeceeCcccCCEEEEEEE
Confidence 356789999999998664444 89999865543321 12233456666666666666666553
No 184
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.32 E-value=9.7e-06 Score=46.84 Aligned_cols=47 Identities=21% Similarity=0.447 Sum_probs=31.5
Q ss_pred ccCCCeeeecCCCCceeEEecCCcEEEEEEEecCCC--CeeEEEecCCccee
Q psy15390 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPA--PEIKWRREDNQPIS 54 (142)
Q Consensus 5 ~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~~w~~~~~~~~~ 54 (142)
+.++|..... .........|+.++|.|.+.+..+ ..+.|++ ||+.+.
T Consensus 2 v~~~P~~p~i--~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~ 50 (111)
T cd05772 2 VRAKPSVPVV--SGPSGRANPGQSVNFTCSAHGFSPRDITVKWLK-NGNELS 50 (111)
T ss_pred cccCCCCcEe--CCchhccCCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECc
Confidence 4455554432 223334557888999999998433 4789999 888764
No 185
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.30 E-value=6.8e-06 Score=42.44 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=34.4
Q ss_pred CeEEEEEE-EecCCccEEEEEE----------Eeccccc----eEEEccCCCCCCeEEEEEE
Q psy15390 79 MGAYLCIA-TKIGPLKIFWEII----------FHMHYGE----QLNITKISRTEMGAYLCIA 125 (142)
Q Consensus 79 ~G~y~C~~-~~~~~~~~~w~~~----------~~~~~~~----~l~i~~~~~~d~g~y~C~a 125 (142)
+-...|.+ ...+...+.|.+. ....... .|.|.+++.+|+|+|+|.|
T Consensus 3 ~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 3 SVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred eEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 34678999 6778889999742 1111111 2999999999999999986
No 186
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.29 E-value=3.9e-06 Score=43.32 Aligned_cols=59 Identities=29% Similarity=0.638 Sum_probs=31.1
Q ss_pred EEEEEEEecCCCCeeEEEecCCcceecCCcc-----eEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRK-----KVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 29 v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~-----~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
+.|.|.+.+.+...+.|++ ++......... .........|.|.+++..|.|.|.|.+.+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 64 (74)
T cd00096 1 VTLTCLASGPPPPTITWLK-NGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASN 64 (74)
T ss_pred CEEEEEecCCCCCcEEEEE-CCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEec
Confidence 4688999886677899999 54433221100 00011122355555555555555555443
No 187
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.28 E-value=2.6e-06 Score=45.13 Aligned_cols=48 Identities=29% Similarity=0.452 Sum_probs=37.2
Q ss_pred eEEEEEEEecC-CccEEEE------EE---EeccccceEEEccCCCCCCeEEEEEEec
Q psy15390 80 GAYLCIATKIG-PLKIFWE------II---FHMHYGEQLNITKISRTEMGAYLCIATN 127 (142)
Q Consensus 80 G~y~C~~~~~~-~~~~~w~------~~---~~~~~~~~l~i~~~~~~d~g~y~C~a~n 127 (142)
-...|.+...+ .+.++|. .. ......+.|.+..+..+|.|+|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 45789988765 8899998 11 1223456799999999999999999987
No 188
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.26 E-value=2.3e-05 Score=43.82 Aligned_cols=25 Identities=44% Similarity=0.983 Sum_probs=20.2
Q ss_pred CCcEEEEEEEecC-CCC-eeEEEecCCc
Q psy15390 26 EFNITLTCKAEGF-PAP-EIKWRREDNQ 51 (142)
Q Consensus 26 g~~v~l~C~~~~~-~~~-~~~w~~~~~~ 51 (142)
|+.++|.|.+.+. |.. .+.|++ +|+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~-~g~ 40 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLR-DGE 40 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEE-CCE
Confidence 7789999999995 433 789999 775
No 189
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.25 E-value=3.4e-05 Score=42.19 Aligned_cols=25 Identities=40% Similarity=0.942 Sum_probs=20.1
Q ss_pred EEEEEEEec-CCCCeeEEEecCCccee
Q psy15390 29 ITLTCKAEG-FPAPEIKWRREDNQPIS 54 (142)
Q Consensus 29 v~l~C~~~~-~~~~~~~w~~~~~~~~~ 54 (142)
++|.|.+.+ .|...+.|++ +|+.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~k-ng~~l~ 27 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFK-NDKEIK 27 (83)
T ss_pred EEEEEEeCCccCCCEEEEEE-CCEECc
Confidence 689999987 5667899999 887753
No 190
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.20 E-value=1.8e-05 Score=43.97 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=23.6
Q ss_pred eeccceEEEeecCCCCCeEEEEEEEecCC
Q psy15390 63 MHYGEQLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 63 ~~~~~~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
...+.+|.|.+++.+|+|.|.|.+.....
T Consensus 53 ~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~ 81 (92)
T cd05741 53 IYPNGSLLIQNLTKEDSGTYTLQIISTNG 81 (92)
T ss_pred EcCCceEEEccCCchhcEEEEEEEEcCCC
Confidence 33456799999999999999999876543
No 191
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.18 E-value=8.1e-06 Score=45.72 Aligned_cols=21 Identities=14% Similarity=0.529 Sum_probs=10.9
Q ss_pred CCCeEEEEEEEecCCccEEEE
Q psy15390 77 TEMGAYLCIATKIGPLKIFWE 97 (142)
Q Consensus 77 ~d~G~y~C~~~~~~~~~~~w~ 97 (142)
.|.-...|.+...+.+.+.|.
T Consensus 7 G~~VtL~C~~s~~~~~~i~W~ 27 (94)
T cd07690 7 GDTAELPCTASQKKSIQFHWK 27 (94)
T ss_pred CCCEEEEEEeCCCCCcEEEEE
Confidence 444445555554455555554
No 192
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.17 E-value=1.2e-05 Score=43.34 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=16.1
Q ss_pred cceEEEccCCCCCCeEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCI 124 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~ 124 (142)
...|.|.+++.+|+|.|.|.
T Consensus 61 ~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 61 DVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEEcCCCHHHCEEEEEc
Confidence 44688888888888888885
No 193
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.17 E-value=7.9e-06 Score=45.78 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=45.2
Q ss_pred ecCCCCCeEEEEE-EEecCCccEEEEEE----------EeccccceEEEccCCCCCCe-EEEEEEecCCCC
Q psy15390 73 KISRTEMGAYLCI-ATKIGPLKIFWEII----------FHMHYGEQLNITKISRTEMG-AYLCIATNNVPP 131 (142)
Q Consensus 73 ~v~~~d~G~y~C~-~~~~~~~~~~w~~~----------~~~~~~~~l~i~~~~~~d~g-~y~C~a~n~~~~ 131 (142)
.+...+.-...|. ....+.+.++|... +....++.|.|.++..+|+| .|.|.|.|....
T Consensus 14 ~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 14 EVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred EEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 3455666678897 57788899999632 23334688999999999999 899999987654
No 194
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.15 E-value=2.2e-05 Score=43.74 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=43.4
Q ss_pred cCCCCCeEEEEEEEecCCccEEEEEEE---------eccccceEEEccCCCCCCeEEEEEEecCC--CCCeeeEEEEEEC
Q psy15390 74 ISRTEMGAYLCIATKIGPLKIFWEIIF---------HMHYGEQLNITKISRTEMGAYLCIATNNV--PPSVSKRITVDVE 142 (142)
Q Consensus 74 v~~~d~G~y~C~~~~~~~~~~~w~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~a~n~~--~~~~s~~~~l~V~ 142 (142)
|...+.-..+|... .+...+.|.+.. .......|.|..++.+|+|.|+|+..+.. -+..|..+.|.|.
T Consensus 13 V~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~Vt 91 (91)
T cd05751 13 VPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVVT 91 (91)
T ss_pred cCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEeC
Confidence 34455556677664 333344444321 01224568999999999999999999862 2346778888874
No 195
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.13 E-value=3.1e-05 Score=43.89 Aligned_cols=32 Identities=25% Similarity=0.592 Sum_probs=24.2
Q ss_pred EEecCCcEEEEEEEecC-C-CCeeEEEecCCccee
Q psy15390 22 AVREEFNITLTCKAEGF-P-APEIKWRREDNQPIS 54 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~-~-~~~~~w~~~~~~~~~ 54 (142)
...+++.++|.|.+.+. | ...+.|++ +|+.+.
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~ 46 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKV-DGATVS 46 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence 34567889999999983 3 34689999 888763
No 196
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.11 E-value=1.8e-05 Score=44.82 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=29.8
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
....|.+..+..+|+|.|+|.+.|.-.. ..+.+.|+|
T Consensus 68 ~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C-~~~~i~l~V 104 (104)
T cd05896 68 EEDSIWFRPAELQDSGLYTCVLRNSTYC-MKVSMSLTV 104 (104)
T ss_pred eCCEEEEEeCChhhCeEEEEEECCCCcc-eEEEEEEEC
Confidence 3567899999999999999999988654 466666654
No 197
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.10 E-value=4.7e-05 Score=43.54 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=25.5
Q ss_pred eEEeeccceEEEeecCCCCCeEEEEEEEecC
Q psy15390 60 KVHMHYGEQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 60 ~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
|.....+++|.|.+++..|+|.|.|.+.+..
T Consensus 63 R~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 63 RETIYPNGSLLIQNVTQKDTGFYTLQTITTN 93 (105)
T ss_pred cEEEeCCCcEEEecCCcccCEEEEEEEEeCC
Confidence 3445567899999999999999999987653
No 198
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.10 E-value=1.7e-05 Score=44.55 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=39.6
Q ss_pred CCCeEEEEEEE-ecCCccEEEEEEE------------eccccceEEEccCCCCCCeEEEEEEecCCCC
Q psy15390 77 TEMGAYLCIAT-KIGPLKIFWEIIF------------HMHYGEQLNITKISRTEMGAYLCIATNNVPP 131 (142)
Q Consensus 77 ~d~G~y~C~~~-~~~~~~~~w~~~~------------~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~ 131 (142)
.+.-...|..- ..+.+.++|.+.. .....+.|.+.+++.+|+|.|+|.|.|....
T Consensus 18 G~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 18 GWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 33445677554 3577889997541 1123578999999999999999999997654
No 199
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.06 E-value=0.00015 Score=38.77 Aligned_cols=24 Identities=38% Similarity=0.861 Sum_probs=18.7
Q ss_pred EEEEEEEecC-CC-CeeEEEecCCcce
Q psy15390 29 ITLTCKAEGF-PA-PEIKWRREDNQPI 53 (142)
Q Consensus 29 v~l~C~~~~~-~~-~~~~w~~~~~~~~ 53 (142)
++|.|.+.+. |. ..+.|++ +|+.+
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLR-NGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEE-CCEEC
Confidence 6899999985 33 4789999 88754
No 200
>KOG1480|consensus
Probab=98.05 E-value=1.1e-05 Score=59.63 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=78.2
Q ss_pred CCeeeecCCCCceeEEecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeecc--------ceEEEeecCCCCC
Q psy15390 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG--------EQLNITKISRTEM 79 (142)
Q Consensus 8 ~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--------~~l~i~~v~~~d~ 79 (142)
.|.|.. .++...+..|..+.+.|.+. +.+++.+.. +...+...+...+...+. -...|.....++.
T Consensus 24 l~~~~~---~p~~~yii~~~p~~l~c~a~--~a~~i~~kc-~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~ 97 (909)
T KOG1480|consen 24 LPHFTT---EPKSAYIIKNKPLRLQCKAN--PATQIRFKC-NSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETS 97 (909)
T ss_pred cceeee---cCCccceecCCCccceecCC--ccccccccc-ChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcc
Confidence 344555 77888899999999999875 444444333 555444333222221111 1234444444443
Q ss_pred e---EEEEEEEec-----------------------------------------------CCccEEEEEE---------E
Q psy15390 80 G---AYLCIATKI-----------------------------------------------GPLKIFWEII---------F 100 (142)
Q Consensus 80 G---~y~C~~~~~-----------------------------------------------~~~~~~w~~~---------~ 100 (142)
| .|.|+..-. +.+.+.|.+. +
T Consensus 98 ~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~ 177 (909)
T KOG1480|consen 98 GGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV 177 (909)
T ss_pred cCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccc
Confidence 3 488865421 1134555432 2
Q ss_pred eccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 101 HMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 101 ~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.......+.+..+...|+|+|+|.|.|..+.+.++.+.+.|
T Consensus 178 ~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 178 IRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQV 218 (909)
T ss_pred hhhhcCCccccchhhhhcccceeeeehhhccccccceEEEE
Confidence 33446678899999999999999999999888888776654
No 201
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.04 E-value=5.4e-05 Score=45.48 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=39.8
Q ss_pred eEEEeecCCCCCeEEEEEEEecCCcc-EEEEEEEeccccceEEEccCC--CCCCeEEEEEEecCCCC--CeeeEE
Q psy15390 68 QLNITKISRTEMGAYLCIATKIGPLK-IFWEIIFHMHYGEQLNITKIS--RTEMGAYLCIATNNVPP--SVSKRI 137 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~~~~-~~w~~~~~~~~~~~l~i~~~~--~~d~g~y~C~a~n~~~~--~~s~~~ 137 (142)
+|.|.+++..|+|.|.|.+.+.+... ..-...+.....-.+...... .++...++|.|.+.... .+.|.-
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~ 76 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR 76 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEE
Confidence 58999999999999999987643221 111112211111111111111 34556899999986443 456643
No 202
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.98 E-value=6.6e-05 Score=41.46 Aligned_cols=27 Identities=41% Similarity=0.977 Sum_probs=21.1
Q ss_pred CCcEEEEEEEe-cCCCCeeEEEecCCcce
Q psy15390 26 EFNITLTCKAE-GFPAPEIKWRREDNQPI 53 (142)
Q Consensus 26 g~~v~l~C~~~-~~~~~~~~w~~~~~~~~ 53 (142)
|+.+.+.|.+. +.|.+.+.|+. ++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~-~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYL-DGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEE-TTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEE-CCCce
Confidence 78999999764 47888999999 66655
No 203
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.93 E-value=0.0003 Score=39.48 Aligned_cols=65 Identities=17% Similarity=0.269 Sum_probs=41.8
Q ss_pred CCCCCeEEEEEEEecCCccEEEEE-----------------EEec----cccceEEEccCCCCCCeEEEEEEecCCCCCe
Q psy15390 75 SRTEMGAYLCIATKIGPLKIFWEI-----------------IFHM----HYGEQLNITKISRTEMGAYLCIATNNVPPSV 133 (142)
Q Consensus 75 ~~~d~G~y~C~~~~~~~~~~~w~~-----------------~~~~----~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~ 133 (142)
...++....|.+.+.+...+.|.+ ++.. ...-.|.|..+..+|+|.|.|.+...+. .
T Consensus 10 ~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~--~ 87 (95)
T cd05881 10 VEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDPP--Q 87 (95)
T ss_pred cCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcccC--e
Confidence 445666677777776555555531 1111 1223589999999999999999987653 4
Q ss_pred eeEEEEEE
Q psy15390 134 SKRITVDV 141 (142)
Q Consensus 134 s~~~~l~V 141 (142)
+..+++.|
T Consensus 88 ~~~~~~~~ 95 (95)
T cd05881 88 EAYTTITV 95 (95)
T ss_pred EEEEEEEC
Confidence 55555544
No 204
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.89 E-value=0.00037 Score=38.96 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=22.8
Q ss_pred ecCCcEEEEEEEecCCCC--eeEEEecCCccee
Q psy15390 24 REEFNITLTCKAEGFPAP--EIKWRREDNQPIS 54 (142)
Q Consensus 24 ~~g~~v~l~C~~~~~~~~--~~~w~~~~~~~~~ 54 (142)
..|+..+|.|.+.+.-++ .+.|.+ +|+.+.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~ 44 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIP 44 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEE-CCEECC
Confidence 447777999999994333 679999 888764
No 205
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.89 E-value=0.00017 Score=41.27 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=15.8
Q ss_pred eEEEeecCCCCCeEEEEEEEec
Q psy15390 68 QLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 71 ~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 71 SLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred EEEECCCCHHHCEEEEEEEecC
Confidence 5777777777777777776643
No 206
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.88 E-value=0.0001 Score=41.89 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.7
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCC
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVP 130 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~ 130 (142)
..+|.|.+++.+|+|.|.|.+.+..+
T Consensus 66 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 66 SFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEEEECCCCHHHCEEEEEEEecCCC
Confidence 34789999999999999999998764
No 207
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.85 E-value=0.00037 Score=39.02 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=23.7
Q ss_pred ecCCcEEEEEEEecCCCC--eeEEEecCCcceec
Q psy15390 24 REEFNITLTCKAEGFPAP--EIKWRREDNQPISI 55 (142)
Q Consensus 24 ~~g~~v~l~C~~~~~~~~--~~~w~~~~~~~~~~ 55 (142)
..|+.++|.|.+.+..++ .+.|++ +|+.+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~ 44 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFK-NGQEETE 44 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEE-CCeecCC
Confidence 468899999999994333 679999 8886543
No 208
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.76 E-value=0.00047 Score=40.08 Aligned_cols=33 Identities=27% Similarity=0.671 Sum_probs=24.1
Q ss_pred EEecCCcEEEEEEEecC-CC-CeeEEEecCCcceec
Q psy15390 22 AVREEFNITLTCKAEGF-PA-PEIKWRREDNQPISI 55 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~-~~-~~~~w~~~~~~~~~~ 55 (142)
.+.++..++|.|.+.+. |. -.+.|++ +++.+..
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~~ 48 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKV-NGKEVTD 48 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEE-CCEECCC
Confidence 34467789999999984 33 3689999 8876643
No 209
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.76 E-value=0.0003 Score=40.01 Aligned_cols=31 Identities=35% Similarity=0.694 Sum_probs=23.2
Q ss_pred EecCCcEEEEEEEecCCCC--eeEEEecCCccee
Q psy15390 23 VREEFNITLTCKAEGFPAP--EIKWRREDNQPIS 54 (142)
Q Consensus 23 ~~~g~~v~l~C~~~~~~~~--~~~w~~~~~~~~~ 54 (142)
+..|..++|.|.+.+..++ .+.|++ +|+.+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~ 45 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQ-NGQPLS 45 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEE-CCEECC
Confidence 3457889999999994433 579999 887653
No 210
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.75 E-value=2.1e-05 Score=43.24 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.2
Q ss_pred ccceEEEeecCCCCCeEEEEEEEec
Q psy15390 65 YGEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 65 ~~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
..+.|.|.+++..|+|+|+|.+.|.
T Consensus 45 ~~~~L~I~nv~~~dsG~YtC~a~n~ 69 (85)
T cd05853 45 SAGDLMIRSIQLKHAGKYVCMVQTS 69 (85)
T ss_pred CCCcEEEecCCHHHCEEEEEEEEcc
Confidence 3457999999999999999999875
No 211
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.73 E-value=0.00013 Score=37.61 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=32.8
Q ss_pred EecCCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 23 VREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 23 ~~~g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
...|.+|+|+|+.... .+.|++ ++..+.. .+..+.+.+-. ++.|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~-n~~~~~g---------~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKK-NDQVSQG---------SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEe-CCccCCC---------CCceEEeeccC-CCCceEEEEeCC
Confidence 3569999999975522 389999 5544321 11233344444 778888887753
No 212
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.70 E-value=0.00058 Score=38.41 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.3
Q ss_pred ceEEEccCCCCCCeEEEEEEecC
Q psy15390 106 EQLNITKISRTEMGAYLCIATNN 128 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~ 128 (142)
..|.|.+++.+|+|+|.|.+.+.
T Consensus 63 ~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 63 ASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred EEEEECCCChhhCEEEEEEEccC
Confidence 46899999999999999998764
No 213
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.70 E-value=0.0013 Score=36.98 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=18.3
Q ss_pred cCCcEEEEEEE-ecCCCCeeEEEe
Q psy15390 25 EEFNITLTCKA-EGFPAPEIKWRR 47 (142)
Q Consensus 25 ~g~~v~l~C~~-~~~~~~~~~w~~ 47 (142)
......+.|.+ .+.|.+.|.|++
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~ 37 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWET 37 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEe
Confidence 34567778998 568889999998
No 214
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.69 E-value=4.9e-05 Score=39.87 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEeecCCCCCeEEEEEEEecC
Q psy15390 69 LNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
|.|.+++.+|+|.|+|.+.|..
T Consensus 37 L~I~~v~~~D~G~Y~C~a~N~~ 58 (69)
T cd05725 37 LKIRNVTAGDEGSYTCEAENMV 58 (69)
T ss_pred EEECcCChhHCEEEEEEEEcCC
Confidence 8999999999999999998853
No 215
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.65 E-value=5.2e-05 Score=41.64 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.6
Q ss_pred cceEEEeecCCCCCeEEEEEEEecCC
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
.+.|.|.+++..|+|.|+|.+.|...
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g 71 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVD 71 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCC
Confidence 35799999999999999999998643
No 216
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=97.63 E-value=6.1e-05 Score=40.37 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.0
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
+|.|.+++.+|+|.|+|.+.|..
T Consensus 42 ~L~I~~~~~~D~G~Y~C~A~N~~ 64 (75)
T cd05892 42 TLLIKNVNKKDAGWYTVSAVNEA 64 (75)
T ss_pred EEEECCCChhhCEEEEEEEEcCc
Confidence 59999999999999999999853
No 217
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.62 E-value=0.0022 Score=37.14 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=22.9
Q ss_pred CceeEEecCCcEEEEEEEecCCC---CeeEEEec
Q psy15390 18 PSSVAVREEFNITLTCKAEGFPA---PEIKWRRE 48 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~~~---~~~~w~~~ 48 (142)
.....+..|..++|.|.+++... ..+.|++.
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 44556778999999999977443 35789884
No 218
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=97.62 E-value=7.3e-05 Score=42.05 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.9
Q ss_pred cceEEEeecCCCCCeEEEEEEEec
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.++|.|.+++.+|+|.|+|.+.|.
T Consensus 59 ~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 59 SSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred ceEEEEeccChhhCEEEEEEEEcC
Confidence 457999999999999999999986
No 219
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.59 E-value=0.00042 Score=39.09 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=41.6
Q ss_pred CCcEEEEEEEecCC---CCeeEEEecCCccee---c-----------CCcceEEee------ccceEEEeecCCCCCeEE
Q psy15390 26 EFNITLTCKAEGFP---APEIKWRREDNQPIS---I-----------NKRKKVHMH------YGEQLNITKISRTEMGAY 82 (142)
Q Consensus 26 g~~v~l~C~~~~~~---~~~~~w~~~~~~~~~---~-----------~~~~~~~~~------~~~~l~i~~v~~~d~G~y 82 (142)
|++++|+|...+.. ...+.|++.+..... . ..+.|.... ...+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999986332 225788874322110 0 011233221 124699999999999999
Q ss_pred EEEEEecCC
Q psy15390 83 LCIATKIGP 91 (142)
Q Consensus 83 ~C~~~~~~~ 91 (142)
.|.+.+.+.
T Consensus 81 ~C~v~~~~~ 89 (100)
T cd05713 81 TCFFQSDGF 89 (100)
T ss_pred EEEEecCCc
Confidence 999987543
No 220
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.58 E-value=0.00019 Score=41.77 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.7
Q ss_pred cceEEEeecCCCCCeEEEEEEEecCC
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
+.+|.|.+++.+|+|.|.|.+.+.+.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 34799999999999999999988654
No 221
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=97.56 E-value=0.00011 Score=39.79 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=21.3
Q ss_pred ceEEEeecCCCCCeEEEEEEEec
Q psy15390 67 EQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
+.|.|.++...|+|.|+|.|.|.
T Consensus 44 ~~L~i~~~~~~D~G~YtC~A~N~ 66 (79)
T cd05855 44 GCLQLDNPTHLNNGIYTLVAKNE 66 (79)
T ss_pred EEEEECCCCcccCEEEEEEEEcC
Confidence 46999999999999999999985
No 222
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.56 E-value=0.0031 Score=35.32 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=21.8
Q ss_pred cCCcEEEEEEEecCCC--CeeEEEecCCccee
Q psy15390 25 EEFNITLTCKAEGFPA--PEIKWRREDNQPIS 54 (142)
Q Consensus 25 ~g~~v~l~C~~~~~~~--~~~~w~~~~~~~~~ 54 (142)
.|+..+|.|.+.+.-+ -.+.|.+ +|+.+.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~ 44 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLK-NGVPVT 44 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEE-CCeEcc
Confidence 4667899999999433 3679999 887654
No 223
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.55 E-value=8.1e-05 Score=41.54 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
..|.|.++..+|+|.|+|.+.|..
T Consensus 56 ~~L~I~~v~~~D~G~Y~C~A~N~~ 79 (92)
T cd05866 56 SRLTIYNANIEDAGIYRCQATDAK 79 (92)
T ss_pred eEEEEecCChHHCEEEEEEEEcCC
Confidence 469999999999999999999864
No 224
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.54 E-value=0.00012 Score=40.82 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.5
Q ss_pred cceEEEeecCCCCCeEEEEEEEec
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.+.|.|.+++.+|+|.|+|.+.|.
T Consensus 56 ~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 56 RSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred EEEEEEecCCcccCEEEEEEEEcC
Confidence 346999999999999999999986
No 225
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.54 E-value=8.3e-05 Score=40.63 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.1
Q ss_pred cceEEEeecCCCCCeEEEEEEEecC
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.+.|.|.+++..|+|.|.|.+.|..
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~ 72 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGT 72 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCC
Confidence 3579999999999999999998853
No 226
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.53 E-value=0.00012 Score=40.02 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.1
Q ss_pred cceEEEeecCCCCCeEEEEEEEecC
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.+.|.|.+++.+|+|.|.|.+.+..
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~ 69 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHEST 69 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECc
Confidence 4579999999999999999998753
No 227
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=97.53 E-value=0.00011 Score=40.74 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.6
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
..|.|.+++.+|+|.|+|.+.|..
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred ceEEEeccccccCcEEEEEeeccc
Confidence 469999999999999999999863
No 228
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=97.53 E-value=8.3e-05 Score=39.83 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.+++.+|+|.|+|.+.|..
T Consensus 42 ~L~I~~v~~~D~G~Y~C~A~N~~ 64 (75)
T cd05893 42 CLLIQGATKEDAGWYTVSAKNEA 64 (75)
T ss_pred EEEECCCCHHHCEEEEEEEEcCC
Confidence 48999999999999999999853
No 229
>PHA02633 hypothetical protein; Provisional
Probab=97.52 E-value=0.0004 Score=35.30 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=21.8
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
...|.|.++..+|+|.|.|...|.--. ...++.|.|
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c-~~~si~l~V 52 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYS-DMMKFDLCI 52 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCee-EEEEEEEEE
Confidence 345677777778888888888765332 233344443
No 230
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.51 E-value=0.00014 Score=40.93 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.8
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
..|.|.+++.+|+|.|+|.+.|..
T Consensus 64 ~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 64 SSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred eEEEEeeCCcCCCEEEEEEEeccC
Confidence 479999999999999999999863
No 231
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.49 E-value=0.00013 Score=40.27 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.3
Q ss_pred ceEEEeecCCCCCeEEEEEEEec
Q psy15390 67 EQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
+.|.|.++...|+|.|+|.+.|.
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~ 69 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINS 69 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcC
Confidence 46999999999999999999986
No 232
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.48 E-value=8.8e-05 Score=41.12 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.8
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
+.|.|.+++.+|+|.|+|.+.|..
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCC
Confidence 579999999999999999999853
No 233
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.47 E-value=0.00019 Score=38.23 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCeEEEEEEEec
Q psy15390 68 QLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.|.|.+++.+|+|.|.|.+.|.
T Consensus 41 ~L~I~~~~~~D~G~Y~C~A~N~ 62 (75)
T cd05763 41 VFFIVDVKIEDTGVYSCTAQNT 62 (75)
T ss_pred EEEEeeCCcccCEEEEEEEEcC
Confidence 4889999999999999999885
No 234
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=97.47 E-value=0.00016 Score=38.68 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.9
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.+++.+|+|.|+|.+.|..
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~ 64 (75)
T cd05744 42 CLLIQNANKEDAGWYTVSAVNEA 64 (75)
T ss_pred EEEECCCCcccCEEEEEEEEcCC
Confidence 59999999999999999999853
No 235
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.47 E-value=0.0013 Score=38.28 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.9
Q ss_pred cceEEEeecCCCCCeEEEEEEEecCC
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
+.++.|.+++.+|.|.|+|.+.|.+.
T Consensus 79 daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 79 DGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred eeEEEEccCCcccCEEEEEEEEcCCC
Confidence 35799999999999999999998654
No 236
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.46 E-value=0.00017 Score=39.73 Aligned_cols=64 Identities=17% Similarity=0.403 Sum_probs=43.1
Q ss_pred CCcEEEEEEEecCCC--CeeEEEecCCcceecC--Cc--ceE--EeeccceEEEeecCCCCCeEEEEEEEec
Q psy15390 26 EFNITLTCKAEGFPA--PEIKWRREDNQPISIN--KR--KKV--HMHYGEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 26 g~~v~l~C~~~~~~~--~~~~w~~~~~~~~~~~--~~--~~~--~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
|+++.|.|.+.+.+. ..+.|..++....... .. ... .....+.|.|.+++..|+|.|+|.+.|.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 72 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSG 72 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeec
Confidence 789999999987554 4679988443221111 10 000 0123457999999999999999999874
No 237
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.46 E-value=0.0018 Score=35.27 Aligned_cols=30 Identities=27% Similarity=0.637 Sum_probs=22.8
Q ss_pred cCCcEEEEEEEecC-CCC-eeEEEecCCcceec
Q psy15390 25 EEFNITLTCKAEGF-PAP-EIKWRREDNQPISI 55 (142)
Q Consensus 25 ~g~~v~l~C~~~~~-~~~-~~~w~~~~~~~~~~ 55 (142)
.++.++|.|.+.+. |.. .+.|++ ++..+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~ 38 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLK-NGKEVTE 38 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEE-TTEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEe-ccceeee
Confidence 38899999999984 433 689999 7776643
No 238
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.45 E-value=0.00014 Score=40.42 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.2
Q ss_pred eEEEeecCCCCCeEEEEEEEecCC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
.|.|.+++.+|+|.|.|.+.|...
T Consensus 56 ~L~I~~v~~~D~G~Y~C~a~N~~G 79 (91)
T cd05740 56 TLTFNNVTRSDTGHYQCEASNEVS 79 (91)
T ss_pred EEEECcCChhhCEEEEEEEEcCCC
Confidence 489999999999999999998643
No 239
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.45 E-value=0.0042 Score=34.87 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.6
Q ss_pred CCcEEEEEEEe-cCCCCeeEEEe
Q psy15390 26 EFNITLTCKAE-GFPAPEIKWRR 47 (142)
Q Consensus 26 g~~v~l~C~~~-~~~~~~~~w~~ 47 (142)
-..+.+.|.+. +.|.+.|.|++
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~ 37 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSS 37 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEc
Confidence 34577899875 57888999998
No 240
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=97.44 E-value=0.0002 Score=40.29 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.6
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
+.|.|.+++.+|+|.|+|.+.|..
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~ 86 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTI 86 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCC
Confidence 479999999999999999999853
No 241
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=97.44 E-value=0.00019 Score=40.10 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.8
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
+.|.|.+++..|+|.|.|.+.|..
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~ 85 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRI 85 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCC
Confidence 479999999999999999999863
No 242
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=97.43 E-value=0.00021 Score=38.00 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.4
Q ss_pred eEEEeecCCCCCeEEEEEEEec
Q psy15390 68 QLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.|.|.++...|+|.|+|.+.|.
T Consensus 41 ~L~I~~~~~~D~G~Y~C~a~N~ 62 (74)
T cd05748 41 SLVIKNAERSDSGKYTLTLKNP 62 (74)
T ss_pred EEEECCCCcCcCEEEEEEEECC
Confidence 4899999999999999999985
No 243
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.43 E-value=0.0015 Score=36.79 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=22.7
Q ss_pred EecCCcEEEEEEEecCCCC--eeEEEecCCccee
Q psy15390 23 VREEFNITLTCKAEGFPAP--EIKWRREDNQPIS 54 (142)
Q Consensus 23 ~~~g~~v~l~C~~~~~~~~--~~~w~~~~~~~~~ 54 (142)
...+..++|.|.+.+.-++ .+.|.+ +|+.+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~ 45 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWRE-GNSPSI 45 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEE-CCEECc
Confidence 3446779999999994333 579999 887653
No 244
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.42 E-value=0.00027 Score=40.01 Aligned_cols=25 Identities=12% Similarity=0.472 Sum_probs=22.1
Q ss_pred ceEEEeecCCCCCeEEEEEEEecCC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
.+|.|.+++.+|+|.|.|.+.+.|.
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~ 87 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPT 87 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCC
Confidence 5799999999999999999988543
No 245
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.42 E-value=0.00069 Score=37.20 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=30.7
Q ss_pred CeEEEEEEEecCCccEEEEEEEe--------ccccceEEEccCCCCCCeEEEEEEe
Q psy15390 79 MGAYLCIATKIGPLKIFWEIIFH--------MHYGEQLNITKISRTEMGAYLCIAT 126 (142)
Q Consensus 79 ~G~y~C~~~~~~~~~~~w~~~~~--------~~~~~~l~i~~~~~~d~g~y~C~a~ 126 (142)
+-...|.... ..+.+.|..... ......|.|..++.+|+|.|.|.+.
T Consensus 13 ~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 13 DVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred CEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 3344565443 355788865321 1123347788999999999999997
No 246
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.42 E-value=0.0016 Score=37.41 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.4
Q ss_pred cceEEEccCCCCCCeEEEEEEecCC
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNV 129 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~ 129 (142)
...|.|.++..+|+|.|.|.+.+..
T Consensus 71 ~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 71 RSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred ccEEEECCCChhhCEEEEEEeeCCC
Confidence 3468999999999999999998653
No 247
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.41 E-value=0.0016 Score=36.49 Aligned_cols=28 Identities=32% Similarity=0.625 Sum_probs=21.3
Q ss_pred cCCcEEEEEEEecC-CC-CeeEEEecCCcce
Q psy15390 25 EEFNITLTCKAEGF-PA-PEIKWRREDNQPI 53 (142)
Q Consensus 25 ~g~~v~l~C~~~~~-~~-~~~~w~~~~~~~~ 53 (142)
.+..++|.|.+.+. |. -.+.|++ +|..+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~ 42 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLV-DGQVA 42 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEE-CCEEC
Confidence 45669999999994 33 3689999 88765
No 248
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.40 E-value=0.00038 Score=39.18 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=22.2
Q ss_pred EEecCCcEEEEEEEecC-CCC--eeEEEecCCc
Q psy15390 22 AVREEFNITLTCKAEGF-PAP--EIKWRREDNQ 51 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~-~~~--~~~w~~~~~~ 51 (142)
.+..|+.++|.|.+.+. .++ .+.|.+ ++.
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r-~~~ 41 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTR-GSG 41 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEE-CCe
Confidence 35568999999999998 333 579999 654
No 249
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.38 E-value=0.002 Score=36.01 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=26.6
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCC----CeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPP----SVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~----~~s~~~~l~V 141 (142)
...|.|..++.+|+|.|.|.......+ ..|..+.|.|
T Consensus 54 ~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdpl~l~V 94 (94)
T cd05711 54 QASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDPLKIVV 94 (94)
T ss_pred EEEEEecCCCcccCEEEEEEEECCCCCccccCCCCCeEEeC
Confidence 346899999999999999997532211 4566776654
No 250
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.36 E-value=0.00023 Score=39.27 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.9
Q ss_pred eEEEeecCCCCCeEEEEEEEecCC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
.|.|.+++.+|+|.|.|.+.|...
T Consensus 54 ~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 54 VLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred EEEECcCChhhCEEEEEEEEcCCC
Confidence 488999999999999999998643
No 251
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.35 E-value=0.001 Score=38.39 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=40.8
Q ss_pred CCcEEEEEEEecCC-------CCeeEEEecC----Ccce------------ecCCcceEEeec------cceEEEeecCC
Q psy15390 26 EFNITLTCKAEGFP-------APEIKWRRED----NQPI------------SINKRKKVHMHY------GEQLNITKISR 76 (142)
Q Consensus 26 g~~v~l~C~~~~~~-------~~~~~w~~~~----~~~~------------~~~~~~~~~~~~------~~~l~i~~v~~ 76 (142)
|++++|+|...-.| .+.+.|++.. .+.. ....+.|..... +.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999965322 3578998731 1111 111123333322 34799999999
Q ss_pred CCCeEEEEEEEe
Q psy15390 77 TEMGAYLCIATK 88 (142)
Q Consensus 77 ~d~G~y~C~~~~ 88 (142)
+|+|.|.|.+..
T Consensus 82 ~D~G~Y~C~v~~ 93 (110)
T cd05902 82 SDSGTYRCEVVL 93 (110)
T ss_pred HHCEEEEEEEEE
Confidence 999999998875
No 252
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.34 E-value=0.00022 Score=38.38 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.+++.+|+|.|.|.+.|..
T Consensus 43 ~L~I~~v~~~D~G~Y~C~a~N~~ 65 (78)
T cd05743 43 TLTIRDVKESDQGAYTCEAINTR 65 (78)
T ss_pred EEEECCCChHHCEEEEEEEEecC
Confidence 48999999999999999998853
No 253
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=97.34 E-value=0.00032 Score=38.58 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=21.7
Q ss_pred cceEEEeecCCCCCeEEEEEEEec
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.+.|.|.++..+|+|.|.|.+.|.
T Consensus 51 ~~~L~I~~~~~~D~G~Y~c~a~N~ 74 (86)
T cd05894 51 LSSFVIEGAEREDEGVYTITVTNP 74 (86)
T ss_pred eEEEEECCCccCcCEEEEEEEEeC
Confidence 356999999999999999999985
No 254
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.34 E-value=0.0043 Score=36.17 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.4
Q ss_pred ceEEEeecCCCCCeEEEEEEEec
Q psy15390 67 EQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.+|.|.+++..|+|.|.|.+...
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g 101 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHG 101 (117)
T ss_pred eEEEEcccccccCEEEEEEEEEC
Confidence 47999999999999999988753
No 255
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.33 E-value=0.00021 Score=40.56 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=22.8
Q ss_pred ccceEEEeecCCCCCeEEEEEEEecC
Q psy15390 65 YGEQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 65 ~~~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
..+.|.|.+++.+|+|.|+|.+.|..
T Consensus 63 ~~s~L~I~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd05859 63 YVSKLKLIRAKEEDSGLYTALAQNED 88 (101)
T ss_pred eccEEEEeeCCHHHCEEEEEEEEcCC
Confidence 34679999999999999999999863
No 256
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.31 E-value=0.00031 Score=37.86 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.2
Q ss_pred ccceEEEeecCCCCCeEEEEEEEec
Q psy15390 65 YGEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 65 ~~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
..+.|.|.+++.+|+|.|.|.+.|.
T Consensus 45 ~~~~L~I~~~~~~D~G~Y~C~a~N~ 69 (81)
T cd05765 45 NIGQLVIYNAQPQDAGLYTCTARNS 69 (81)
T ss_pred cccEEEEccCCcccCEEEEEEEecC
Confidence 3457999999999999999999985
No 257
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=97.30 E-value=0.0003 Score=39.10 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCeEEEEEEEec
Q psy15390 68 QLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.|.|.+++.+|+|.|+|.+.|.
T Consensus 59 ~L~I~~v~~~D~G~Y~C~a~N~ 80 (92)
T cd05737 59 SLTIKGVSSEDSGKYGIVVKNK 80 (92)
T ss_pred EEEEccCChhhCEEEEEEEEEC
Confidence 3899999999999999999984
No 258
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.28 E-value=0.00038 Score=38.30 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.+++.+|+|.|.|.+.|..
T Consensus 54 ~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 54 VLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred EEEECCCCcccCEEEEEEEEECC
Confidence 48999999999999999998853
No 259
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.28 E-value=0.00045 Score=39.12 Aligned_cols=63 Identities=17% Similarity=0.351 Sum_probs=39.6
Q ss_pred cEEEEEEEecCC---CCeeEEEecCCc--c--e---ec--------CCcceEEee-----ccceEEEeecCCCCCeEEEE
Q psy15390 28 NITLTCKAEGFP---APEIKWRREDNQ--P--I---SI--------NKRKKVHMH-----YGEQLNITKISRTEMGAYLC 84 (142)
Q Consensus 28 ~v~l~C~~~~~~---~~~~~w~~~~~~--~--~---~~--------~~~~~~~~~-----~~~~l~i~~v~~~d~G~y~C 84 (142)
+++|+|...... ...+.|++.... . + .. ....|.... .+..|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986543 237889884211 1 1 00 111122222 23479999999999999999
Q ss_pred EEEecC
Q psy15390 85 IATKIG 90 (142)
Q Consensus 85 ~~~~~~ 90 (142)
.+.+.+
T Consensus 82 ~v~~~p 87 (100)
T cd05888 82 RVITFP 87 (100)
T ss_pred EEEeCC
Confidence 987743
No 260
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.27 E-value=0.00034 Score=39.25 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.3
Q ss_pred ceEEEeecCCCCCeEEEEEEEe
Q psy15390 67 EQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
..|.|.+++.+|+|.|+|.+..
T Consensus 62 ~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 62 LIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred EEEEECCCCcccCEEEEEEEEe
Confidence 5799999999999999999875
No 261
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.26 E-value=0.00054 Score=38.52 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=41.7
Q ss_pred CcEEEEEEEecC-CCCeeEEEecCCc---ce-----------ecCCcceEEee----ccceEEEeecCCCCCeEEEEEEE
Q psy15390 27 FNITLTCKAEGF-PAPEIKWRREDNQ---PI-----------SINKRKKVHMH----YGEQLNITKISRTEMGAYLCIAT 87 (142)
Q Consensus 27 ~~v~l~C~~~~~-~~~~~~w~~~~~~---~~-----------~~~~~~~~~~~----~~~~l~i~~v~~~d~G~y~C~~~ 87 (142)
++++|.|..... ...++.|.+..+. .+ ......|+... .+.+|.|.|++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468899987542 2346889874321 11 01111233322 23579999999999999999998
Q ss_pred ecCCc
Q psy15390 88 KIGPL 92 (142)
Q Consensus 88 ~~~~~ 92 (142)
..|.-
T Consensus 81 t~P~g 85 (96)
T cd05889 81 TYPQG 85 (96)
T ss_pred eCCCC
Confidence 76543
No 262
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.26 E-value=0.0024 Score=35.88 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=22.2
Q ss_pred EecCCcEEEEEEEecC-CC--CeeEEEecCCcce
Q psy15390 23 VREEFNITLTCKAEGF-PA--PEIKWRREDNQPI 53 (142)
Q Consensus 23 ~~~g~~v~l~C~~~~~-~~--~~~~w~~~~~~~~ 53 (142)
+.+|..+++.|.+.+. |. ..+.|++ +...+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~~l 44 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GETLL 44 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEec-Cccee
Confidence 4789999999999763 33 4688998 55544
No 263
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.20 E-value=0.00068 Score=38.11 Aligned_cols=65 Identities=15% Similarity=0.409 Sum_probs=41.3
Q ss_pred CcEEEEEEEecCC-CCeeEEEecCCc---cee-----------cCCcceEEe----eccceEEEeecCCCCCeEEEEEEE
Q psy15390 27 FNITLTCKAEGFP-APEIKWRREDNQ---PIS-----------INKRKKVHM----HYGEQLNITKISRTEMGAYLCIAT 87 (142)
Q Consensus 27 ~~v~l~C~~~~~~-~~~~~w~~~~~~---~~~-----------~~~~~~~~~----~~~~~l~i~~v~~~d~G~y~C~~~ 87 (142)
++++|+|.....+ ..++.|.+..+. .+. .....|... ..+.+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4689999986433 337899874221 111 011123222 124579999999999999999988
Q ss_pred ecCC
Q psy15390 88 KIGP 91 (142)
Q Consensus 88 ~~~~ 91 (142)
..|.
T Consensus 81 tfP~ 84 (96)
T cd05887 81 TFPL 84 (96)
T ss_pred eCCC
Confidence 7543
No 264
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=97.19 E-value=0.00043 Score=37.34 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEeecCCCCCeEEEEEEEec
Q psy15390 69 LNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~ 89 (142)
|.|.+++.+|+|.|+|.+.|.
T Consensus 47 L~I~~~~~~DsG~Y~C~a~n~ 67 (79)
T cd04973 47 VQIKDAVPRDSGLYACVTSSP 67 (79)
T ss_pred EEECCCChhhCEEEEEEEeCC
Confidence 778999999999999999874
No 265
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.17 E-value=0.0034 Score=35.21 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=20.7
Q ss_pred cCCcEEEEEEEecCCC--CeeEEEecCCcc
Q psy15390 25 EEFNITLTCKAEGFPA--PEIKWRREDNQP 52 (142)
Q Consensus 25 ~g~~v~l~C~~~~~~~--~~~~w~~~~~~~ 52 (142)
.++.++|.|.+.+.-+ -.+.|++ +|+.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k-~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNS-GSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeE-CCEE
Confidence 4667999999998433 3678999 8775
No 266
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.17 E-value=0.001 Score=37.47 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=44.9
Q ss_pred ecCCcEEEEEEEec-CCCCeeEEEecCCccee-cC--------------CcceEEeec-cceEEEeecCCCCCeEEEEEE
Q psy15390 24 REEFNITLTCKAEG-FPAPEIKWRREDNQPIS-IN--------------KRKKVHMHY-GEQLNITKISRTEMGAYLCIA 86 (142)
Q Consensus 24 ~~g~~v~l~C~~~~-~~~~~~~w~~~~~~~~~-~~--------------~~~~~~~~~-~~~l~i~~v~~~d~G~y~C~~ 86 (142)
..|++|+|+|.... .....+.|++ ....+. .. .+.|+.... +.+|.|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~-~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSF-NTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEec-CCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 36999999998754 3445789998 322211 10 012233333 357999999999999999998
Q ss_pred EecCC
Q psy15390 87 TKIGP 91 (142)
Q Consensus 87 ~~~~~ 91 (142)
...+.
T Consensus 81 ~~~~~ 85 (97)
T cd05775 81 NTKNG 85 (97)
T ss_pred EcCCC
Confidence 87654
No 267
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.14 E-value=0.00032 Score=36.69 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEeecCCCCCeEEEEEEEecC
Q psy15390 69 LNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
|.|.++..+|+|.|+|.+.|..
T Consensus 33 L~i~~v~~~D~G~YtC~a~N~~ 54 (67)
T cd05863 33 LQIKDVTEASAGTYTLVLWNSA 54 (67)
T ss_pred EEECCCCHHHCEEEEEEEEECC
Confidence 6788899999999999999863
No 268
>PHA02982 hypothetical protein; Provisional
Probab=97.12 E-value=0.028 Score=36.00 Aligned_cols=117 Identities=9% Similarity=0.169 Sum_probs=63.4
Q ss_pred eEEecCCcEEEEEEEec-CCCCeeEEEecCCcceecCCc------------------ceEEe-eccceEEEeecCCCCCe
Q psy15390 21 VAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINKR------------------KKVHM-HYGEQLNITKISRTEMG 80 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~------------------~~~~~-~~~~~l~i~~v~~~d~G 80 (142)
+.+..++.|.|.|.... .......|+..++.-+..... .+... ...++|+|.++.....|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 34566999999998533 223357798855544432111 01111 12357999999999999
Q ss_pred EEEEEEEecCCccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEE
Q psy15390 81 AYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRIT 138 (142)
Q Consensus 81 ~y~C~~~~~~~~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~ 138 (142)
.|+|++.......-.-.+-........+..-. ...+....+|.+-...++-..|.+.
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~-e~nNeT~V~CyVgS~~~dvp~W~V~ 170 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKEDILYVVE-EHNNETIITCFVGSKHGDVPRFIVA 170 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecceEEEEEE-ecCCeEEEEEEEEeccCCCccEEEe
Confidence 99999886432222111212221111111111 2344557788887666553456554
No 269
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=97.11 E-value=0.00058 Score=38.12 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEeecCCCCCeEEEEEEEecCC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
.|.|.+++.+|.|.|+|.+.|...
T Consensus 59 ~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 59 EMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred EEEECCCChhhCEEEEEEEEcCCC
Confidence 488999999999999999998643
No 270
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.10 E-value=0.00092 Score=38.86 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.9
Q ss_pred ceEEEeecCCCCCeEEEEEEEecCC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
.+|.|.+++.+|+|.|.|.+.+.+.
T Consensus 80 ~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 80 ASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eEEEEeeCCcccCEEEEEEEEeCCC
Confidence 4699999999999999999987543
No 271
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.09 E-value=0.0018 Score=33.73 Aligned_cols=49 Identities=20% Similarity=0.515 Sum_probs=33.7
Q ss_pred CCcEEEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 26 EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 26 g~~v~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
..+|.|.|.. ...+.|++ +...... . ..++.+-.+.....|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~--------~-~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV--------S-NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc--------c-ccEEeccCcccCCCcceEecCcc
Confidence 4579999965 24699998 5443321 1 44677777778888889997755
No 272
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=97.09 E-value=0.00074 Score=37.51 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.7
Q ss_pred ceEEEeecCCCCCeEEEEEEEec
Q psy15390 67 EQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
+.|.|.+++.+|+|.|.|.+.|.
T Consensus 59 ~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 59 STFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred eEEEECCCCcccCEeEEEEEEcC
Confidence 35899999999999999999985
No 273
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=97.09 E-value=0.00058 Score=38.52 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.++...|+|.|+|.+.|..
T Consensus 57 ~L~I~~~~~~D~G~Ytc~a~N~~ 79 (98)
T cd05762 57 KLTITEGQQEHCGCYTLEVENKL 79 (98)
T ss_pred EEEECCCChhhCEEEEEEEEcCC
Confidence 48999999999999999999863
No 274
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.08 E-value=0.00084 Score=35.80 Aligned_cols=22 Identities=36% Similarity=0.726 Sum_probs=19.8
Q ss_pred eEEEeecCCCCCeEEEEEEEec
Q psy15390 68 QLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.|.|.++..+|.|.|+|.+.|.
T Consensus 40 ~l~I~~~~~~D~G~Y~C~a~N~ 61 (76)
T cd05736 40 ELHISNVRYEDTGAYTCIAKNE 61 (76)
T ss_pred EEEECcCCcccCEEEEEEEEcC
Confidence 3789999999999999999985
No 275
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=97.06 E-value=0.00063 Score=37.39 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCeEEEEEEEec
Q psy15390 68 QLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.|.|.++...|+|.|.|.+.|.
T Consensus 57 ~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 57 SLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEESSESGGGSEEEEEEEEET
T ss_pred EEccCCCChhhCEEEEEEEEEC
Confidence 3899999999999999999885
No 276
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.06 E-value=0.00068 Score=37.94 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=21.6
Q ss_pred cceEEEeecCCCCCeEEEEEEEec
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
++.|.|.++..+|+|.|+|.+.|.
T Consensus 59 ~~~L~I~~~~~~DsG~Y~C~~~N~ 82 (94)
T cd05756 59 KDLLWFLPAALEDSGLYTCVVRNS 82 (94)
T ss_pred CCeEEEccCCcccCeEEEEEEcCC
Confidence 457999999999999999999875
No 277
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.05 E-value=0.0015 Score=42.96 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=39.3
Q ss_pred CCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 38 FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 38 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
...|.+.|..++|+.+... .+..+...+.|.+.+....++|.|+|.+.-
T Consensus 10 ~iDP~y~W~GP~g~~l~gn--~~~nIT~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGN--SYVNITETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred cCCCceEEECCCCcccCCC--CeEEEccCceEEeeccccccCCceEEEEEE
Confidence 3467889999888877643 344577788899999999999999998874
No 278
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.05 E-value=0.015 Score=31.93 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=32.4
Q ss_pred EEEEEEecC--CccEEEEEE------EeccccceEEEccCCCCCCeEEEEEEecC
Q psy15390 82 YLCIATKIG--PLKIFWEII------FHMHYGEQLNITKISRTEMGAYLCIATNN 128 (142)
Q Consensus 82 y~C~~~~~~--~~~~~w~~~------~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 128 (142)
.+|...... .+.+.|... ....+...|.+.++...|+|+++|.+.-.
T Consensus 19 Ltl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 19 LTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred EEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 455554433 347888632 22335678999999999999999999744
No 279
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.02 E-value=0.0064 Score=35.21 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=20.4
Q ss_pred cceEEEccCCCCCCeEEEEEEecC
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNN 128 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~ 128 (142)
...|.|.+++.+|+|.|.|.+...
T Consensus 76 ~~~L~I~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 76 TSTLTIQNLEKEDSATYYCAYWES 99 (116)
T ss_pred EEEEEEEECCHHHCEEEEEEEecC
Confidence 346889999999999999999743
No 280
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=97.01 E-value=0.0011 Score=36.09 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.7
Q ss_pred ceEEEeecCCCCCeEEEEEEEec
Q psy15390 67 EQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
..|.|.++..+|+|.|+|.+.|.
T Consensus 51 ~~l~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05857 51 WSLIMESVVPSDKGNYTCVVENE 73 (85)
T ss_pred eEEEEccCCcccCEEEEEEEEeC
Confidence 46889999999999999999985
No 281
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.01 E-value=0.0039 Score=36.11 Aligned_cols=64 Identities=19% Similarity=0.385 Sum_probs=42.6
Q ss_pred cCCcEEEEEEEecCC------------CCeeEEEecC-Cc-c--e---------ecCCcceEEee------ccceEEEee
Q psy15390 25 EEFNITLTCKAEGFP------------APEIKWRRED-NQ-P--I---------SINKRKKVHMH------YGEQLNITK 73 (142)
Q Consensus 25 ~g~~v~l~C~~~~~~------------~~~~~w~~~~-~~-~--~---------~~~~~~~~~~~------~~~~l~i~~ 73 (142)
.|++|+|+|...... .+.+.|++.. |. . + ....+.|+... .+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999987532 3589999842 11 1 1 01111233322 245799999
Q ss_pred cCCCCCeEEEEEEEe
Q psy15390 74 ISRTEMGAYLCIATK 88 (142)
Q Consensus 74 v~~~d~G~y~C~~~~ 88 (142)
++.+|+|.|.|.+.+
T Consensus 81 l~~sDsG~Y~C~V~~ 95 (112)
T cd05900 81 LRSNDSGTYRCEVMH 95 (112)
T ss_pred cccccCEEEEEEEec
Confidence 999999999998874
No 282
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.00 E-value=0.00079 Score=36.84 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=19.9
Q ss_pred EEEeecCCCCCeEEEEEEEecCC
Q psy15390 69 LNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
|.|.++..+|+|.|.|.+.|...
T Consensus 53 L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 53 LRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred EEEeeCCHHHCEEEEEEEECCCC
Confidence 67889999999999999998543
No 283
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=96.99 E-value=0.0011 Score=36.63 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.0
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.+++.+|.|.|.|.+.|..
T Consensus 57 ~L~I~~v~~~D~g~Y~C~A~N~~ 79 (90)
T cd04972 57 NLQLSNITSETQTTVTCTAENPV 79 (90)
T ss_pred EEEEecCCcccCEEEEEEEECCC
Confidence 69999999999999999999864
No 284
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=96.98 E-value=0.00072 Score=38.57 Aligned_cols=65 Identities=28% Similarity=0.451 Sum_probs=42.6
Q ss_pred cCCcEEEEEEEecCC------CCeeEEEecC--C--c-ce-e-cC--------CcceEEe----eccceEEEeecCCCCC
Q psy15390 25 EEFNITLTCKAEGFP------APEIKWRRED--N--Q-PI-S-IN--------KRKKVHM----HYGEQLNITKISRTEM 79 (142)
Q Consensus 25 ~g~~v~l~C~~~~~~------~~~~~w~~~~--~--~-~~-~-~~--------~~~~~~~----~~~~~l~i~~v~~~d~ 79 (142)
.|++|+|+|.....+ ...+.|++.. . . .+ . .+ .+.+... ..+.+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987653 4579999841 1 1 01 0 01 1112211 1234799999999999
Q ss_pred eEEEEEEEec
Q psy15390 80 GAYLCIATKI 89 (142)
Q Consensus 80 G~y~C~~~~~ 89 (142)
|.|.|.+.+.
T Consensus 81 G~Y~C~v~~~ 90 (106)
T cd05714 81 GRYRCEVIDG 90 (106)
T ss_pred EEEEEEEEcC
Confidence 9999998763
No 285
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.98 E-value=0.00062 Score=36.20 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.9
Q ss_pred EEEeecCCCCCeEEEEEEEecC
Q psy15390 69 LNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
|.|.+++.+|+|.|.|.+.|..
T Consensus 41 L~I~~v~~~D~G~Y~C~A~N~~ 62 (73)
T cd05852 41 LEILNITKLDEGSYTCFAENNR 62 (73)
T ss_pred EEECcCChhHCEEEEEEEECCC
Confidence 7899999999999999999853
No 286
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=96.96 E-value=0.0014 Score=36.63 Aligned_cols=63 Identities=16% Similarity=0.323 Sum_probs=41.1
Q ss_pred CcEEEEEEEecCC---CCeeEEEecCCc---ce-----------ecCCcceEEee----ccceEEEeecCCCCCeEEEEE
Q psy15390 27 FNITLTCKAEGFP---APEIKWRREDNQ---PI-----------SINKRKKVHMH----YGEQLNITKISRTEMGAYLCI 85 (142)
Q Consensus 27 ~~v~l~C~~~~~~---~~~~~w~~~~~~---~~-----------~~~~~~~~~~~----~~~~l~i~~v~~~d~G~y~C~ 85 (142)
++++|.|.....+ ...+.|++.... .+ ......+.... .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5789999987654 336899984321 00 01112232222 235799999999999999998
Q ss_pred EEec
Q psy15390 86 ATKI 89 (142)
Q Consensus 86 ~~~~ 89 (142)
+...
T Consensus 81 v~~~ 84 (98)
T cd05718 81 FATF 84 (98)
T ss_pred EEeC
Confidence 8653
No 287
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=96.95 E-value=0.00075 Score=35.85 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=19.5
Q ss_pred EEEeecCCCCCeEEEEEEEec
Q psy15390 69 LNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~ 89 (142)
|.|.+++..|+|.|.|.+.|.
T Consensus 42 L~I~~v~~~D~G~Y~C~A~N~ 62 (74)
T cd05745 42 LRISRVALHDQGQYECQAVNI 62 (74)
T ss_pred EEEeeCCHHhCEEEEEEEEeC
Confidence 789999999999999999985
No 288
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.94 E-value=0.014 Score=33.84 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.8
Q ss_pred cceEEEccCCCCCCeEEEEEEecC
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNN 128 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~ 128 (142)
...|.|..+..+|+|.|.|.+...
T Consensus 71 ~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 71 SISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred EEEEEECCCCHHHCEEEEEEEECC
Confidence 346899999999999999999854
No 289
>KOG3515|consensus
Probab=96.91 E-value=0.0048 Score=46.50 Aligned_cols=121 Identities=16% Similarity=0.229 Sum_probs=71.8
Q ss_pred CceeEEecCCcEEEEEEEec-CCCCeeEEEecCCcceecCCcceEE-eecc----ceEEEeecCCCCCeEEEEEEEec--
Q psy15390 18 PSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVH-MHYG----EQLNITKISRTEMGAYLCIATKI-- 89 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~----~~l~i~~v~~~d~G~y~C~~~~~-- 89 (142)
+....+..|+...+.|...+ .|...+.|++ +............. .... ..+........|.|.|.|.+.+.
T Consensus 307 t~~~~ls~g~s~r~~c~~sss~p~~~i~w~~-~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~ 385 (741)
T KOG3515|consen 307 TSDSGLSSGRSARSSCVSSSSKPPAHIAWYK-DTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLEL 385 (741)
T ss_pred CcccccccccccccceeccCCCCccceeeec-cCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccc
Confidence 33344667888888887644 6666899998 54443222111100 0001 12455566788999999998864
Q ss_pred --------------------------------------------CCccEEEEEEEec------------cccceEEEccC
Q psy15390 90 --------------------------------------------GPLKIFWEIIFHM------------HYGEQLNITKI 113 (142)
Q Consensus 90 --------------------------------------------~~~~~~w~~~~~~------------~~~~~l~i~~~ 113 (142)
..+.++|..+... .......+.++
T Consensus 386 ~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v 465 (741)
T KOG3515|consen 386 AHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNV 465 (741)
T ss_pred ccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeecccccccccee
Confidence 1235666532111 11222335568
Q ss_pred CCCCCeEEEEEEecCCCCCeeeEEEEE
Q psy15390 114 SRTEMGAYLCIATNNVPPSVSKRITVD 140 (142)
Q Consensus 114 ~~~d~g~y~C~a~n~~~~~~s~~~~l~ 140 (142)
...|.|.|.|.|.|..|. ....+.+.
T Consensus 466 ~~~d~g~y~~tatns~gg-~~~~~~~~ 491 (741)
T KOG3515|consen 466 SRSDGGSYGLTATNSPGG-AQAYLLLG 491 (741)
T ss_pred eeccCCcceeeeccCCCc-eeeEEeec
Confidence 889999999999999886 44444433
No 290
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.90 E-value=0.0085 Score=34.53 Aligned_cols=65 Identities=20% Similarity=0.411 Sum_probs=42.6
Q ss_pred cCCcEEEEEEEecCC----------CCeeEEEecC-Ccce------------ecCCcceEEee------ccceEEEeecC
Q psy15390 25 EEFNITLTCKAEGFP----------APEIKWRRED-NQPI------------SINKRKKVHMH------YGEQLNITKIS 75 (142)
Q Consensus 25 ~g~~v~l~C~~~~~~----------~~~~~w~~~~-~~~~------------~~~~~~~~~~~------~~~~l~i~~v~ 75 (142)
.|++++|+|.....+ ...+.|++.+ ++.. ....+.|.... ...+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999987644 2468999842 2111 00111233221 22469999999
Q ss_pred CCCCeEEEEEEEec
Q psy15390 76 RTEMGAYLCIATKI 89 (142)
Q Consensus 76 ~~d~G~y~C~~~~~ 89 (142)
.+|+|.|.|.+...
T Consensus 81 ~sD~G~Y~C~v~~~ 94 (110)
T cd05878 81 SSDSGVYRCEVMHG 94 (110)
T ss_pred hhhCEEEEEEEEeC
Confidence 99999999988753
No 291
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.90 E-value=0.00077 Score=35.53 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.+++.+|+|.|.|.+.|..
T Consensus 37 ~L~I~~v~~~D~G~Y~C~a~N~~ 59 (71)
T cd05876 37 TLQLDNVLESDDGEYVCTAENSE 59 (71)
T ss_pred EEEEcccCHHhCEEEEEEEEcCC
Confidence 58999999999999999999853
No 292
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.87 E-value=0.0066 Score=30.66 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=33.3
Q ss_pred EEEEEEecCCccEEEEEEE----------------eccccceEEEccCCCCCCeEEEEEEecCC
Q psy15390 82 YLCIATKIGPLKIFWEIIF----------------HMHYGEQLNITKISRTEMGAYLCIATNNV 129 (142)
Q Consensus 82 y~C~~~~~~~~~~~w~~~~----------------~~~~~~~l~i~~~~~~d~g~y~C~a~n~~ 129 (142)
..|.+...+...+.|.+.. .......+.+..+...|.|.|.|.+.+..
T Consensus 3 l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 3 LTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4566666666677775421 11224468888899999999999998765
No 293
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=96.87 E-value=0.0014 Score=36.86 Aligned_cols=65 Identities=17% Similarity=0.343 Sum_probs=41.0
Q ss_pred CCcEEEEEEEecCCC-CeeEEEecCCc---cee-----c------CCcceEEe----eccceEEEeecCCCCCeEEEEEE
Q psy15390 26 EFNITLTCKAEGFPA-PEIKWRREDNQ---PIS-----I------NKRKKVHM----HYGEQLNITKISRTEMGAYLCIA 86 (142)
Q Consensus 26 g~~v~l~C~~~~~~~-~~~~w~~~~~~---~~~-----~------~~~~~~~~----~~~~~l~i~~v~~~d~G~y~C~~ 86 (142)
|++++|+|....... ..+.|++..+. .+. . ....+... ..+.+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998654332 36899984322 110 0 00112111 12346999999999999999988
Q ss_pred EecC
Q psy15390 87 TKIG 90 (142)
Q Consensus 87 ~~~~ 90 (142)
...|
T Consensus 81 ~~~p 84 (97)
T cd05846 81 NTFP 84 (97)
T ss_pred EeCC
Confidence 7544
No 294
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=96.84 E-value=0.0018 Score=37.24 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=21.3
Q ss_pred cceEEEeecC-CCCCeEEEEEEEecC
Q psy15390 66 GEQLNITKIS-RTEMGAYLCIATKIG 90 (142)
Q Consensus 66 ~~~l~i~~v~-~~d~G~y~C~~~~~~ 90 (142)
.+.|.|.++. ..|.|.|.|.+.|.-
T Consensus 68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~ 93 (109)
T cd05773 68 TSILTIINVSAALDYALFTCTAHNSL 93 (109)
T ss_pred eeEEEECcCCccCCCEEEEEEEEeCC
Confidence 3579999997 599999999999863
No 295
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=96.82 E-value=0.0014 Score=34.53 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=17.9
Q ss_pred EEEeecCCCCCeEEEEEEEec
Q psy15390 69 LNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~ 89 (142)
|.|.+++.+|+|.|+|.+.|.
T Consensus 39 l~i~~v~~~D~G~Y~C~A~N~ 59 (71)
T cd05723 39 LQVLGLVKSDEGFYQCIAEND 59 (71)
T ss_pred EEEEcCCcccCEEEEEEEEcC
Confidence 445688999999999999985
No 296
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.81 E-value=0.00095 Score=35.32 Aligned_cols=21 Identities=29% Similarity=0.749 Sum_probs=19.6
Q ss_pred EEEeecCCCCCeEEEEEEEec
Q psy15390 69 LNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~ 89 (142)
|.|.+++.+|+|.|+|.+.|.
T Consensus 41 L~i~~v~~~D~G~Y~C~a~N~ 61 (73)
T cd04969 41 LEILNVTKSDEGKYTCFAENF 61 (73)
T ss_pred EEEccCChhHCEEEEEEEECC
Confidence 889999999999999999885
No 297
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=96.77 E-value=0.00081 Score=35.22 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.+++.+|+|.|+|.+.|..
T Consensus 37 ~L~i~~v~~~D~G~Y~C~a~N~~ 59 (71)
T cd05731 37 TLKIDNVSEEDDGEYRCTASNSL 59 (71)
T ss_pred EEEECCCCHHHCEEEEEEEEeCC
Confidence 58999999999999999999863
No 298
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.76 E-value=0.00088 Score=36.59 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.7
Q ss_pred ccceEEEeecCCCCCeEEEEEEEecC
Q psy15390 65 YGEQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 65 ~~~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
..+.|.|.+++..|+|.|+|.+.|..
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~ 70 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVV 70 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCC
Confidence 34679999999999999999998853
No 299
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.76 E-value=0.0069 Score=34.40 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=26.1
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
+..|.|+.++..|+|.|.-++.+..|......+++.|
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 5568899999999999999999888864444555544
No 300
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.73 E-value=0.014 Score=32.87 Aligned_cols=30 Identities=33% Similarity=0.615 Sum_probs=23.8
Q ss_pred CceeEEecCCcEEE-EEEE-ecCCCCeeEEEe
Q psy15390 18 PSSVAVREEFNITL-TCKA-EGFPAPEIKWRR 47 (142)
Q Consensus 18 ~~~~~~~~g~~v~l-~C~~-~~~~~~~~~w~~ 47 (142)
...+.+.+|+.+.+ .|.+ .+.|++.|.|+.
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~ 39 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWET 39 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeC
Confidence 34556788999999 8886 457888999997
No 301
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.71 E-value=0.0017 Score=36.97 Aligned_cols=64 Identities=23% Similarity=0.463 Sum_probs=41.8
Q ss_pred cCCcEEEEEEEecCC------CCeeEEEecCCc--c-----eec--------CCcceEEeec----cceEEEeecCCCCC
Q psy15390 25 EEFNITLTCKAEGFP------APEIKWRREDNQ--P-----ISI--------NKRKKVHMHY----GEQLNITKISRTEM 79 (142)
Q Consensus 25 ~g~~v~l~C~~~~~~------~~~~~w~~~~~~--~-----~~~--------~~~~~~~~~~----~~~l~i~~v~~~d~ 79 (142)
.|++++|+|.....| ...+.|++.... . ... ....+..... ..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 346999984211 0 010 0112322221 23699999999999
Q ss_pred eEEEEEEEe
Q psy15390 80 GAYLCIATK 88 (142)
Q Consensus 80 G~y~C~~~~ 88 (142)
|.|.|.+.+
T Consensus 81 G~Y~C~v~~ 89 (106)
T cd05877 81 GRYRCEVID 89 (106)
T ss_pred EEEEEEEEe
Confidence 999999865
No 302
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=96.70 E-value=0.0016 Score=35.97 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=23.6
Q ss_pred eccceEEEeecCCCCCeEEEEEEEecCC
Q psy15390 64 HYGEQLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 64 ~~~~~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
..++.|.|.+++.+|+|.|+|.+.|...
T Consensus 44 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 71 (90)
T cd05726 44 SQTGDLTITNVQRSDVGYYICQTLNVAG 71 (90)
T ss_pred CCCCeEEEeeCChhhCEEEEEEEEcCCC
Confidence 3455799999999999999999998533
No 303
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=96.69 E-value=0.0014 Score=37.24 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.9
Q ss_pred cceEEEeecCCCCCeEEEEEEEec
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.+.|.|.+++.+|+|.|+|.+.|.
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNS 87 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECC
Confidence 456999999999999999999986
No 304
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=96.68 E-value=0.002 Score=34.60 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.9
Q ss_pred ccceEEEeecCCCCCeEEEEEEEecC
Q psy15390 65 YGEQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 65 ~~~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.+++|.|.++..+|+|.|.|.+.|.-
T Consensus 42 ~~~~L~I~~v~~~D~G~Y~C~a~N~~ 67 (79)
T cd05734 42 SNGSLLIKHVLEEDSGYYLCKVSNDV 67 (79)
T ss_pred cCCeEEECcCCcccCEEEEEEEEeCC
Confidence 45679999999999999999999863
No 305
>KOG1480|consensus
Probab=96.67 E-value=0.0021 Score=48.13 Aligned_cols=79 Identities=27% Similarity=0.432 Sum_probs=54.9
Q ss_pred CCceeEEecCCcEEEEEEE-ecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEecCCccEE
Q psy15390 17 TPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIF 95 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~~~~~~ 95 (142)
.+.-..+..+..+.+.|.. .+.|...+.|++ ++..+.... .........+.+..+...|.|+|+|++.|.-..+.+
T Consensus 135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k-~e~~~~pd~--n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLK-NEVVIDPDA--NVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred ChhhheecccccccccccCcccchhhhhhccc-cCCCCCccc--cchhhhcCCccccchhhhhcccceeeeehhhccccc
Confidence 3444456677778888775 456777899999 777665522 222334456899999999999999999987555555
Q ss_pred EEE
Q psy15390 96 WEI 98 (142)
Q Consensus 96 w~~ 98 (142)
|..
T Consensus 212 ~~~ 214 (909)
T KOG1480|consen 212 DPA 214 (909)
T ss_pred cce
Confidence 543
No 306
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.67 E-value=0.012 Score=33.31 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=22.2
Q ss_pred EEecCCcEEEEEEEecCC---CCeeEEEecCCcc
Q psy15390 22 AVREEFNITLTCKAEGFP---APEIKWRREDNQP 52 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~~---~~~~~w~~~~~~~ 52 (142)
.+..+..++|.|.+.+.- ...+.|.+ +|+.
T Consensus 15 ~l~~~~~atLtClV~~f~~P~~i~V~W~~-~g~~ 47 (99)
T cd04986 15 DLLLGSSASLTCTLSGLRDPEGAVFTWTP-SGGK 47 (99)
T ss_pred HhCcCCccEEEEEEeccCCCCCeEEEEEE-CCcc
Confidence 344688899999999844 23689998 6654
No 307
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=96.66 E-value=0.0024 Score=34.76 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEeecCCCCCeEEEEEEEecCC
Q psy15390 69 LNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
|.|.+++.+|+|.|+|.+.|...
T Consensus 53 L~I~~~~~~D~G~Y~C~a~N~~G 75 (86)
T cd05724 53 LLIAEARKSDEGTYKCVATNMVG 75 (86)
T ss_pred EEEeECCcccCEEEEEEEEeccC
Confidence 78999999999999999998633
No 308
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.66 E-value=0.0016 Score=34.74 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.3
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.+++.+|+|.|.|.+.|..
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~ 64 (76)
T cd05867 42 ALILTDVQPSDTAVYQCEARNRH 64 (76)
T ss_pred EEEECCCChhhCEEEEEEEECCC
Confidence 37899999999999999999853
No 309
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=96.64 E-value=0.0018 Score=34.42 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.4
Q ss_pred EEEeecCCCCCeEEEEEEEecCC
Q psy15390 69 LNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
|.|.+++..|+|.|+|.+.|...
T Consensus 40 L~i~~~~~~D~G~Y~C~a~N~~G 62 (74)
T cd05738 40 LQIENSEESDQGKYECVATNSAG 62 (74)
T ss_pred EEECCCChhhCEEEEEEEECCCC
Confidence 78889999999999999998654
No 310
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=96.54 E-value=0.0045 Score=33.13 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=16.5
Q ss_pred EEEeecC----CCCCeEEEEEEEecCC
Q psy15390 69 LNITKIS----RTEMGAYLCIATKIGP 91 (142)
Q Consensus 69 l~i~~v~----~~d~G~y~C~~~~~~~ 91 (142)
|.|.++. .+|+|.|.|.+.|.-.
T Consensus 41 L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05733 41 LVIDNMNGGRAEDYEGEYQCYASNELG 67 (77)
T ss_pred EEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence 4455553 3789999999998643
No 311
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=96.51 E-value=0.0021 Score=34.15 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=21.2
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
+.|.|.+++..|+|.|+|.+.|..
T Consensus 41 ~~L~i~~v~~~D~G~Y~C~A~N~~ 64 (76)
T cd04978 41 GTLILSNVQPNDTAVYQCNASNVH 64 (76)
T ss_pred CEEEECCCChhhCEEEEEEEEccC
Confidence 358999999999999999999853
No 312
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.42 E-value=0.0032 Score=33.30 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.8
Q ss_pred EEEeecCCCCCeEEEEEEEecC
Q psy15390 69 LNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
|.|.++..+|+|.|.|.+.|..
T Consensus 42 L~i~~~~~~D~G~Y~C~a~N~~ 63 (74)
T cd05764 42 LDILITTVKDTGSFTCIASNAA 63 (74)
T ss_pred EEEEECChhhCEEEEEEEECCC
Confidence 5677889999999999999853
No 313
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=96.35 E-value=0.0029 Score=33.79 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEeecCCCCCeEEEEEEEecC
Q psy15390 69 LNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
|.|.+++..|.|.|+|.+.|..
T Consensus 43 l~i~~v~~~D~G~Y~C~A~N~~ 64 (76)
T cd05868 43 IIFSKVQERSSAVYQCNASNEY 64 (76)
T ss_pred EEECCCCHhhCEEEEEEEEcCC
Confidence 5678899999999999999853
No 314
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.35 E-value=0.0062 Score=34.14 Aligned_cols=22 Identities=14% Similarity=0.528 Sum_probs=15.0
Q ss_pred eEEEccCCCCCCeEEEEEEecC
Q psy15390 107 QLNITKISRTEMGAYLCIATNN 128 (142)
Q Consensus 107 ~l~i~~~~~~d~g~y~C~a~n~ 128 (142)
.|.|.+++.+|+|.|.|.+...
T Consensus 65 ~L~I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 65 TVTLNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred EEEEcCCCHHHCEEEEEEcccC
Confidence 4666777777777777766654
No 315
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=96.34 E-value=0.003 Score=33.91 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEeecCCCCCeEEEEEEEecC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.|.|.+++.+|+|.|+|.+.|..
T Consensus 49 ~L~i~~v~~~D~G~Y~C~a~N~~ 71 (82)
T cd05856 49 TLSLKNLKPEDSGKYTCHVSNRA 71 (82)
T ss_pred EEEEccCChhhCEEEEEEEEcCC
Confidence 48899999999999999998853
No 316
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=96.30 E-value=0.0035 Score=35.73 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.4
Q ss_pred ceEEEeecCCCCCeEEEEEEEec
Q psy15390 67 EQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.+|.|.+++..|+|.|.|.+...
T Consensus 79 ~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 79 FSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp EEEEESSESGGGEEEEEEEEEES
T ss_pred EEEEECCCCcCcCEEEEEEEEEC
Confidence 36999999999999999987754
No 317
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.25 E-value=0.026 Score=31.24 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=34.2
Q ss_pred CCCeEEEEEEEec-C-CccEEEEEEEec------------cccc------eEEEccCCCCCCeEEEEEEecCCC
Q psy15390 77 TEMGAYLCIATKI-G-PLKIFWEIIFHM------------HYGE------QLNITKISRTEMGAYLCIATNNVP 130 (142)
Q Consensus 77 ~d~G~y~C~~~~~-~-~~~~~w~~~~~~------------~~~~------~l~i~~~~~~d~g~y~C~a~n~~~ 130 (142)
.+.-...|.+.+. + .+.+.|.+.... ..++ .|.+......|.+.|+|.|.+...
T Consensus 13 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 13 GGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred CCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 4456789999886 4 478999753211 1111 234444444589999999998654
No 318
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=96.18 E-value=0.0072 Score=34.13 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.0
Q ss_pred ceEEEeecCCCC-CeEEEEEEEec
Q psy15390 67 EQLNITKISRTE-MGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d-~G~y~C~~~~~ 89 (142)
+.|.|.++...| .|.|.|.+.|+
T Consensus 64 S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 64 STLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred EEEEECCCccccCCcEEEEEEEeC
Confidence 469999998877 68999999985
No 319
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=96.15 E-value=0.0043 Score=33.80 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEeecCCCCCeEEEEEEEec
Q psy15390 69 LNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~ 89 (142)
|.|.+++.+|+|.|+|.+.+.
T Consensus 50 l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 50 LSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred EEECccCHHHCEEEEEEEEeC
Confidence 778899999999999999875
No 320
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=96.11 E-value=0.0051 Score=34.19 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.9
Q ss_pred ceEEEeecCCCCCeEEEEEEEec
Q psy15390 67 EQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.+|.|.+++.+|+|.|+|.+.|.
T Consensus 58 ~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 58 ASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred EEEEECCCChhhCEEEEEEEEeC
Confidence 36999999999999999999985
No 321
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=96.06 E-value=0.011 Score=31.60 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=16.4
Q ss_pred CCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 116 TEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 116 ~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
.|.|.|+|.|.|..|...+..+.|
T Consensus 53 ~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 53 AYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CCCEEEEEEEEcCCCeEEeeEEEE
Confidence 477888888888888654544443
No 322
>smart00409 IG Immunoglobulin.
Probab=96.05 E-value=0.011 Score=31.28 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=21.0
Q ss_pred cceEEEeecCCCCCeEEEEEEEec
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
...|.|.++...|+|.|.|.+.+.
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00409 50 NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcC
Confidence 446999999999999999998854
No 323
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.05 E-value=0.011 Score=31.28 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=21.0
Q ss_pred cceEEEeecCCCCCeEEEEEEEec
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
...|.|.++...|+|.|.|.+.+.
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00410 50 NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcC
Confidence 446999999999999999998854
No 324
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=95.89 E-value=0.0058 Score=33.61 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEeecCCCCCeEEEEEEEec
Q psy15390 69 LNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~~~~ 89 (142)
|.|.+++.+|+|.|.|.+.+.
T Consensus 53 L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 53 LLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred EEEccCCHHHCEEEEEEEecC
Confidence 789999999999999999865
No 325
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=95.87 E-value=0.12 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=23.5
Q ss_pred cceEEEccCCCCCCeEEEEEE-ecCCCCCeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIA-TNNVPPSVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a-~n~~~~~~s~~~~l~V 141 (142)
...........+|+|.++|.| .+... .......|.|
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~~~~~k-~~~s~~~i~v 78 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTASDNEPK-ERESKIEILV 78 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEEECTTE-EEEEEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEEEcCCceE-EEEEEEEEEc
Confidence 344566788889999999999 54443 2344444443
No 326
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=95.84 E-value=0.018 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=16.4
Q ss_pred EEEeecC----CCCCeEEEEEEEecCC
Q psy15390 69 LNITKIS----RTEMGAYLCIATKIGP 91 (142)
Q Consensus 69 l~i~~v~----~~d~G~y~C~~~~~~~ 91 (142)
|.|.++. ..|+|.|.|.+.|...
T Consensus 41 L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05875 41 LVIDFSGGGRPEDYEGEYQCFARNNLG 67 (77)
T ss_pred EEEeccCCCCCCCCCEEEEEEEEeccc
Confidence 5566553 2468999999998644
No 327
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.83 E-value=0.0065 Score=34.60 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=17.3
Q ss_pred eEEEeecCCCCCeEEEEEEEe
Q psy15390 68 QLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~ 88 (142)
.|.|.+++.+|+|.|.|.+.+
T Consensus 72 ~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 72 TLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred EEEECCCChHHCEEEEEEEeC
Confidence 588889999999999997654
No 328
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=95.78 E-value=0.013 Score=34.20 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=16.2
Q ss_pred ceEEEccCCCCCCeEEEEEEec
Q psy15390 106 EQLNITKISRTEMGAYLCIATN 127 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n 127 (142)
.+|.|.+++.+|+|.|.|.+..
T Consensus 80 ~sL~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 80 CSLLISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred EEEEEccCChhhCeEEEEEEEc
Confidence 3577778888888888887754
No 329
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.74 E-value=0.14 Score=28.33 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=38.2
Q ss_pred CceeEEecCCcEEEEEEEecC-----CCCeeEEEecCCcceecCCcceEEeecc-ceEEEeecCCCCCeEEEEE
Q psy15390 18 PSSVAVREEFNITLTCKAEGF-----PAPEIKWRREDNQPISINKRKKVHMHYG-EQLNITKISRTEMGAYLCI 85 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~l~i~~v~~~d~G~y~C~ 85 (142)
++...+..|++++..|..... ....+.|+. ++..++... .+ ...+. +..++.+.+...+-.|-|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl-n~~~iP~~q-y~-~in~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKL-NGEKIPGSQ-YR-VINDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEEC-SSCESTCGC-EE-EESTTEEEEEESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEE-CCEECChhH-cc-eeCCeEEEEEEccCCCCCceEEEEE
Confidence 445567889999999998652 445788988 777554332 22 12222 4567777766666566665
No 330
>smart00406 IGv Immunoglobulin V-Type.
Probab=95.68 E-value=0.006 Score=32.52 Aligned_cols=59 Identities=25% Similarity=0.594 Sum_probs=36.1
Q ss_pred cEEEEEEEecCCCC--eeEEEecCC-cc---eec-----------CCcceEEeec-----cceEEEeecCCCCCeEEEEE
Q psy15390 28 NITLTCKAEGFPAP--EIKWRREDN-QP---ISI-----------NKRKKVHMHY-----GEQLNITKISRTEMGAYLCI 85 (142)
Q Consensus 28 ~v~l~C~~~~~~~~--~~~w~~~~~-~~---~~~-----------~~~~~~~~~~-----~~~l~i~~v~~~d~G~y~C~ 85 (142)
++.|.|........ .+.|++... .. +.. ....++.... ...|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899988765543 688988421 11 110 1112222221 13699999999999999996
Q ss_pred E
Q psy15390 86 A 86 (142)
Q Consensus 86 ~ 86 (142)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 331
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=95.66 E-value=0.013 Score=32.69 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=17.6
Q ss_pred EEEeecC-CCCCeEEEEEEEecCC
Q psy15390 69 LNITKIS-RTEMGAYLCIATKIGP 91 (142)
Q Consensus 69 l~i~~v~-~~d~G~y~C~~~~~~~ 91 (142)
|.|.++. ..|+|.|.|.+.|...
T Consensus 60 L~i~~~~~~~D~G~Y~C~A~N~~G 83 (94)
T cd05848 60 LIISNPSEVKDSGRYQCLATNSIG 83 (94)
T ss_pred EEEccCCccCcCEEEEEEEEcCCC
Confidence 4566664 6899999999998643
No 332
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=95.54 E-value=0.018 Score=32.62 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.2
Q ss_pred ccceEEEeecCCCCCeEEEEEEEec
Q psy15390 65 YGEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 65 ~~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
..+.|.+.+++.+|.|.|+|.+.|.
T Consensus 63 Y~S~L~L~Rlk~~E~G~YTf~a~N~ 87 (101)
T cd05860 63 YVSELHLTRLKGTEGGTYTFLVSNS 87 (101)
T ss_pred EEEEEEEeecChhhCcEEEEEEECC
Confidence 3457999999999999999999985
No 333
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.52 E-value=0.0072 Score=35.81 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=17.8
Q ss_pred EEecCCcEEEEEEEecCC-----CCeeEEEecCCcce
Q psy15390 22 AVREEFNITLTCKAEGFP-----APEIKWRREDNQPI 53 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~~-----~~~~~w~~~~~~~~ 53 (142)
...-.++|.|+|.+.... ...+.|.. ++..+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~I 58 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKF-KNKDI 58 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEE-TTEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEE-CCeEE
Confidence 344599999999986522 22588998 66654
No 334
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=95.51 E-value=0.019 Score=30.85 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.6
Q ss_pred ceEEEeecCCCCCeEEEEEEEec
Q psy15390 67 EQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
..|.|.+++.+|.|.|.|.+.|.
T Consensus 51 ~~l~i~~~~~~d~g~Y~C~~~n~ 73 (85)
T cd05729 51 WTLILESVVPSDSGKYTCIVENK 73 (85)
T ss_pred EEEEEeECCcccCEEEEEEEEEC
Confidence 36899999999999999999875
No 335
>PHA02633 hypothetical protein; Provisional
Probab=95.50 E-value=0.021 Score=29.14 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=20.5
Q ss_pred ccceEEEeecCCCCCeEEEEEEEec
Q psy15390 65 YGEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 65 ~~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
.+..|-|-++..+|+|.|.|...|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~ 40 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNE 40 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCC
Confidence 3446888999999999999988653
No 336
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=95.48 E-value=0.018 Score=36.17 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.1
Q ss_pred cceEEEeecCCCCCeEEEEEEEec
Q psy15390 66 GEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
...+.|.+++.+|+|.|.|...-.
T Consensus 84 ~StItIknVt~sDeGcY~C~F~tf 107 (189)
T PHA02987 84 ESTILIKNVSLKDNGCYTCIFNTL 107 (189)
T ss_pred cceEEEEeCChhhCeEEEEEEEec
Confidence 357999999999999999988754
No 337
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=95.38 E-value=0.019 Score=31.89 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=16.4
Q ss_pred EeecCCCCCeEEEEEEEecCC
Q psy15390 71 ITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 71 i~~v~~~d~G~y~C~~~~~~~ 91 (142)
+.++..+|+|.|+|.+.|...
T Consensus 68 ~~~~~~~D~G~Y~C~a~N~~G 88 (100)
T cd07693 68 HGRKGRSDEGVYVCVAHNSLG 88 (100)
T ss_pred ccCCCcCcCEEEEEEEEcccc
Confidence 344578999999999998643
No 338
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=95.36 E-value=0.021 Score=31.83 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=17.4
Q ss_pred EEEeecC-CCCCeEEEEEEEecC
Q psy15390 69 LNITKIS-RTEMGAYLCIATKIG 90 (142)
Q Consensus 69 l~i~~v~-~~d~G~y~C~~~~~~ 90 (142)
|.|.++. ..|+|.|.|.+.|..
T Consensus 59 L~I~~~~~~~D~G~Y~C~A~N~~ 81 (93)
T cd05849 59 LVINNPDKYKDAGRYVCIVSNIY 81 (93)
T ss_pred EEECcCCcCCCCEEEEEEEEeCc
Confidence 4566664 589999999999863
No 339
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=95.10 E-value=0.018 Score=32.75 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=12.8
Q ss_pred eEEEccCCCCCCeEEEEEEe
Q psy15390 107 QLNITKISRTEMGAYLCIAT 126 (142)
Q Consensus 107 ~l~i~~~~~~d~g~y~C~a~ 126 (142)
.|.|..++.+|+|+|.|.+.
T Consensus 70 ~L~I~~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 70 VLTLKNFQKENEGYYFCSVA 89 (104)
T ss_pred EEEECCCCHHHCEEEEEEEc
Confidence 36666666666666666654
No 340
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=95.03 E-value=0.029 Score=31.24 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=17.4
Q ss_pred EEEeecC-CCCCeEEEEEEEecCC
Q psy15390 69 LNITKIS-RTEMGAYLCIATKIGP 91 (142)
Q Consensus 69 l~i~~v~-~~d~G~y~C~~~~~~~ 91 (142)
|.|.++. ..|+|.|.|.+.|...
T Consensus 60 L~I~~~~~~~D~G~Y~C~A~N~~G 83 (94)
T cd05850 60 LVINNPQKARDAGSYQCLAINRCG 83 (94)
T ss_pred EEEccCCccCcCEEEEEEEEcCcC
Confidence 4565544 5899999999998644
No 341
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=95.01 E-value=0.018 Score=32.88 Aligned_cols=20 Identities=25% Similarity=0.816 Sum_probs=17.0
Q ss_pred eEEEeecCCCCCeEEEEEEE
Q psy15390 68 QLNITKISRTEMGAYLCIAT 87 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~ 87 (142)
.|.|.+++.+|+|.|.|...
T Consensus 73 ~L~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 73 RLHINRVKPEDSGTYFCMTV 92 (107)
T ss_pred EEEECCCCHHHCEEEEEeEc
Confidence 58999999999999999754
No 342
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=94.65 E-value=0.029 Score=29.64 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=17.9
Q ss_pred cCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 112 KISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 112 ~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.+..+|+|.|+|.|.+..+...+..+.|.|
T Consensus 51 ~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 51 NVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 344556667777776655444566666654
No 343
>PHA03376 BARF1; Provisional
Probab=94.58 E-value=0.1 Score=33.09 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.9
Q ss_pred cccceEEEccCCCCCCeEEEEEEecC
Q psy15390 103 HYGEQLNITKISRTEMGAYLCIATNN 128 (142)
Q Consensus 103 ~~~~~l~i~~~~~~d~g~y~C~a~n~ 128 (142)
.++-+|.|.+++.+|.|+|+|...-.
T Consensus 84 ~gnvsLvI~~l~lSDdGtY~C~fQkg 109 (221)
T PHA03376 84 ANTFFLVVTAANISHDGNYLCRMKLG 109 (221)
T ss_pred CCeEEEEEEeeeecCCceEEEEEEcC
Confidence 35567889999999999999999754
No 344
>KOG4597|consensus
Probab=94.37 E-value=0.14 Score=36.91 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=23.7
Q ss_pred eeEEecCCcEEEEEEEecCCCCeeEEEe
Q psy15390 20 SVAVREEFNITLTCKAEGFPAPEIKWRR 47 (142)
Q Consensus 20 ~~~~~~g~~v~l~C~~~~~~~~~~~w~~ 47 (142)
...+.++++..++|-..|.+.+.|.|-+
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~V~c~q 232 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRVVTCEQ 232 (560)
T ss_pred hhhcccchhhcccccccCCcCceeeeeh
Confidence 3457789999999999999999999965
No 345
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=94.36 E-value=0.065 Score=31.21 Aligned_cols=17 Identities=18% Similarity=0.640 Sum_probs=8.6
Q ss_pred EEEeecCCCCCeEEEEE
Q psy15390 69 LNITKISRTEMGAYLCI 85 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~ 85 (142)
|.|.+++.+|+|.|.|.
T Consensus 78 L~I~~~~~~Dsa~YyCa 94 (117)
T cd04981 78 LQLNSLTPEDTAVYYCA 94 (117)
T ss_pred EEECCCCHHHCEEEEEE
Confidence 45555555555555553
No 346
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.32 E-value=0.58 Score=33.20 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=45.1
Q ss_pred ceeEEecCCcEEEEEEEecC---CCCeeEEEecCCcceec-----------------CCcceE-------EeeccceEEE
Q psy15390 19 SSVAVREEFNITLTCKAEGF---PAPEIKWRREDNQPISI-----------------NKRKKV-------HMHYGEQLNI 71 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~~~---~~~~~~w~~~~~~~~~~-----------------~~~~~~-------~~~~~~~l~i 71 (142)
....+..|..|.+.|..+-- ......|+. .|-+..+ +....+ .....++|+|
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~-t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI 350 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWID-TGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI 350 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEe-cCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence 45566679999999998652 234578987 3332210 000000 0122467999
Q ss_pred eecCCCCCeEEEEEEEec
Q psy15390 72 TKISRTEMGAYLCIATKI 89 (142)
Q Consensus 72 ~~v~~~d~G~y~C~~~~~ 89 (142)
.++.....|.|.|++...
T Consensus 351 kka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 351 KKAHINNAGCYEAQAFMG 368 (500)
T ss_pred eeEEEEcCCceEEEEecC
Confidence 999999999999999753
No 347
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=94.30 E-value=0.41 Score=27.17 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=34.4
Q ss_pred CCCCCeEEEEEEEecCCc-c--EEEEEEE--------e------ccccceEEEccCCCCCCe-EEEEEEecCCCC
Q psy15390 75 SRTEMGAYLCIATKIGPL-K--IFWEIIF--------H------MHYGEQLNITKISRTEMG-AYLCIATNNVPP 131 (142)
Q Consensus 75 ~~~d~G~y~C~~~~~~~~-~--~~w~~~~--------~------~~~~~~l~i~~~~~~d~g-~y~C~a~n~~~~ 131 (142)
...+.-..+|.+.+..++ . +.|.+-. . ......+.+ .+..+|.| .|+|+|.+...+
T Consensus 14 ~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~-~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 14 PVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITI-TVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEE-ecchhhCCcEEEEEEEeccCc
Confidence 345555678998875443 3 6886411 1 011223444 45667777 999999988765
No 348
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=94.20 E-value=0.08 Score=28.69 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.1
Q ss_pred CCCeEEEEEEEecCC
Q psy15390 77 TEMGAYLCIATKIGP 91 (142)
Q Consensus 77 ~d~G~y~C~~~~~~~ 91 (142)
.|.|.|.|.+.|.-.
T Consensus 57 ~d~g~Y~C~A~N~~G 71 (81)
T cd05749 57 NETSKFSCEAHNAKG 71 (81)
T ss_pred cCCeEEEEEEEeccC
Confidence 478999999998633
No 349
>PHA03042 CD47-like protein; Provisional
Probab=93.63 E-value=0.34 Score=32.45 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=35.9
Q ss_pred EecCCcEEEEEEEecC-----CCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 23 VREEFNITLTCKAEGF-----PAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 23 ~~~g~~v~l~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
..-.+++.++|..... ..-.+.|.. ++...-.... ....+|.+. -+..-.|+|+|.+.+
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf-~~~~If~~n~-----tn~aSL~~~-f~~~l~GNYTCEv~~ 91 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKF-NNKVIFKKNN-----TNTSSLKFN-FSKNLSGNYTCEAIN 91 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEe-CCeeEEEecC-----CcceEEEEe-ccccCCCceeEEEee
Confidence 4458999999998763 233589998 6665422110 011234433 344558999998875
No 350
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.17 E-value=0.83 Score=31.76 Aligned_cols=21 Identities=29% Similarity=0.524 Sum_probs=16.5
Q ss_pred cEEEEEEEecCCCC--eeEEEecC
Q psy15390 28 NITLTCKAEGFPAP--EIKWRRED 49 (142)
Q Consensus 28 ~v~l~C~~~~~~~~--~~~w~~~~ 49 (142)
.++|.|.+.|.-+. .+.|.+ +
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~k-d 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYN-S 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEe-c
Confidence 58999999995443 578999 6
No 351
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=93.15 E-value=0.097 Score=29.03 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=13.9
Q ss_pred CCCCCeEEEEEEEec
Q psy15390 75 SRTEMGAYLCIATKI 89 (142)
Q Consensus 75 ~~~d~G~y~C~~~~~ 89 (142)
...|.|.|.|.+.|.
T Consensus 67 ~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 67 NKPDEGFYQCVAQND 81 (95)
T ss_pred CCCcCEEEEEEEECC
Confidence 789999999999987
No 352
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=92.75 E-value=0.24 Score=32.95 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=24.1
Q ss_pred EeccccceEEEccCCCCCCeEEEEEEecCC
Q psy15390 100 FHMHYGEQLNITKISRTEMGAYLCIATNNV 129 (142)
Q Consensus 100 ~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~ 129 (142)
..+...+.|.+.+-..+++|.|+|..+-..
T Consensus 31 ~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 31 VNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred EEEccCceEEeeccccccCCceEEEEEEEe
Confidence 345567789999999999999999887543
No 353
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=92.37 E-value=0.21 Score=27.09 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=22.0
Q ss_pred ccceEEEeecCCCCCeEEEEEEEecCC
Q psy15390 65 YGEQLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 65 ~~~~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
..+.|.+......|.+.|.|.+.|...
T Consensus 41 ~~s~L~~~~~~~Ddg~~~~C~A~n~a~ 67 (80)
T cd05885 41 VSNTIRFPVDRKDDGAILSCEASHPAL 67 (80)
T ss_pred EEEEEEEEeeeccCCcEEEEEEEChhh
Confidence 345688888889999999999998643
No 354
>PHA03240 envelope glycoprotein M; Provisional
Probab=92.03 E-value=0.62 Score=30.05 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=38.2
Q ss_pred ceeEEecCCcEEEEEEEecCCCCeeEEEe-------cCCcce----ec-----CC---------cceEEe-eccceEEEe
Q psy15390 19 SSVAVREEFNITLTCKAEGFPAPEIKWRR-------EDNQPI----SI-----NK---------RKKVHM-HYGEQLNIT 72 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~~~~~~~~~w~~-------~~~~~~----~~-----~~---------~~~~~~-~~~~~l~i~ 72 (142)
..+.+.+|.+|+|.-.-.-.+.-.+.||+ .+|... .. +. ..++.. =.+++|.|.
T Consensus 31 ievt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 31 EEHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred eecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 34567889999996432213444789998 222211 00 00 011111 135679999
Q ss_pred ecCCCCCeEEEE
Q psy15390 73 KISRTEMGAYLC 84 (142)
Q Consensus 73 ~v~~~d~G~y~C 84 (142)
+++.+|+|+|--
T Consensus 111 ~vn~sd~~nYcr 122 (258)
T PHA03240 111 HLNLSDAGEYCR 122 (258)
T ss_pred EEeecCcchhhh
Confidence 999999999843
No 355
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=91.37 E-value=0.24 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=18.8
Q ss_pred ceEEEeecCCCCCeEEEEEEEecC
Q psy15390 67 EQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 67 ~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
+.|.+......|.|.|+|.+.|..
T Consensus 46 s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 46 STLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred EEEEEeCceecCCCEEEEEEcCcc
Confidence 357777777778889999998753
No 356
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=90.97 E-value=0.92 Score=23.80 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=25.3
Q ss_pred ccEEEEEEEec--cccceEEEccCCCCCCeEEEEEEec
Q psy15390 92 LKIFWEIIFHM--HYGEQLNITKISRTEMGAYLCIATN 127 (142)
Q Consensus 92 ~~~~w~~~~~~--~~~~~l~i~~~~~~d~g~y~C~a~n 127 (142)
..|.|.+-... .....+.+-.....-.|.|.|.+.+
T Consensus 17 tsi~W~kG~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 17 TNITWKKGKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CcEEEecCcccccccccEEeccCcccCCCcceEecCcc
Confidence 45888762111 1245677877788889999999987
No 357
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=90.63 E-value=1.8 Score=23.90 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=32.9
Q ss_pred CCCeEEEEEEEecC--CccEEEEEEEe-c-----------cccceEE---EccCCCCCCeEEEEEEecCC
Q psy15390 77 TEMGAYLCIATKIG--PLKIFWEIIFH-M-----------HYGEQLN---ITKISRTEMGAYLCIATNNV 129 (142)
Q Consensus 77 ~d~G~y~C~~~~~~--~~~~~w~~~~~-~-----------~~~~~l~---i~~~~~~d~g~y~C~a~n~~ 129 (142)
.+.....|.+.+.- ...+.|.+... . ..++.+. ...+..++.+.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 34568999999853 34889976431 1 1122222 23445567789999998764
No 358
>PHA03052 Hypothetical protein; Provisional
Probab=90.39 E-value=1.6 Score=22.80 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=25.6
Q ss_pred CceeEEecCCcEEEEEEEecCC---CCeeEEEecCCcce
Q psy15390 18 PSSVAVREEFNITLTCKAEGFP---APEIKWRREDNQPI 53 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~~---~~~~~w~~~~~~~~ 53 (142)
|..+.+..|.++++.|++.-.+ .+.+.|.. ++...
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~-N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWIS-NGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEe-CCcEE
Confidence 4667788899999999985432 34577776 77766
No 359
>PHA03189 UL14 tegument protein; Provisional
Probab=90.04 E-value=4.7 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.312 Sum_probs=15.9
Q ss_pred CceeEEecCCcEEEEEEEecC
Q psy15390 18 PSSVAVREEFNITLTCKAEGF 38 (142)
Q Consensus 18 ~~~~~~~~g~~v~l~C~~~~~ 38 (142)
+.+..+..|+.++++|.+-..
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H 79 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTH 79 (348)
T ss_pred CCccccCCCceeeeeeeecCC
Confidence 445567789999999997543
No 360
>PHA03270 envelope glycoprotein C; Provisional
Probab=87.34 E-value=9.2 Score=27.75 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=25.8
Q ss_pred eeEEecCCcEEEEEEEecCCCC---eeEEEecCCccee
Q psy15390 20 SVAVREEFNITLTCKAEGFPAP---EIKWRREDNQPIS 54 (142)
Q Consensus 20 ~~~~~~g~~v~l~C~~~~~~~~---~~~w~~~~~~~~~ 54 (142)
...+.+|+...-.|.+...-++ .+.|++ |+..+.
T Consensus 228 ~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~-ng~~V~ 264 (466)
T PHA03270 228 PHAVLEGEPFGATCVAANYYPGDRAAFRWFE-GGDEVF 264 (466)
T ss_pred CCccccCCCceEEEEeeeecCCCceEEEEEe-CCcccc
Confidence 3356789999999999874333 689999 887764
No 361
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=86.51 E-value=3.6 Score=22.27 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=18.1
Q ss_pred cceEEEeecCCCCCeEEEEEEE
Q psy15390 66 GEQLNITKISRTEMGAYLCIAT 87 (142)
Q Consensus 66 ~~~l~i~~v~~~d~G~y~C~~~ 87 (142)
............|+|.+.|.+.
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEEEc
Confidence 3456778888999999999994
No 362
>PHA02982 hypothetical protein; Provisional
Probab=84.64 E-value=8.8 Score=25.06 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=25.3
Q ss_pred eccccceEEEccCCCCCCeEEEEEEecCCCC
Q psy15390 101 HMHYGEQLNITKISRTEMGAYLCIATNNVPP 131 (142)
Q Consensus 101 ~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~ 131 (142)
.....++|.|+++..++.|=|+|.|....+.
T Consensus 95 v~g~~STLTIkk~~i~N~GCYtc~~ks~~~k 125 (251)
T PHA02982 95 VSGNSSTFTMKKPDPQNLGCFTCEAKDAEGK 125 (251)
T ss_pred EeccceeEEeccCCcccCCceEEEEecCCCc
Confidence 3345678999999999999999999875543
No 363
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=84.55 E-value=1.7 Score=24.96 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=20.1
Q ss_pred ccceEEEeecCCCCCeEEEEEEEecC
Q psy15390 65 YGEQLNITKISRTEMGAYLCIATKIG 90 (142)
Q Consensus 65 ~~~~l~i~~v~~~d~G~y~C~~~~~~ 90 (142)
.+.+|.|..++..|+|.|.-.+.+..
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~s 94 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNES 94 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETT
T ss_pred cCceEEEeecCcccCceEEEEEEcCC
Confidence 44689999999999999999888743
No 364
>PHA03042 CD47-like protein; Provisional
Probab=83.18 E-value=12 Score=25.44 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=27.5
Q ss_pred eEEEEEEEec-----CCccEEEEEEE------eccccceEEEccCCCCCCeEEEEEEecCCC
Q psy15390 80 GAYLCIATKI-----GPLKIFWEIIF------HMHYGEQLNITKISRTEMGAYLCIATNNVP 130 (142)
Q Consensus 80 G~y~C~~~~~-----~~~~~~w~~~~------~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~ 130 (142)
-...|.+.+. ....+.|.... ...+..+|.. +-...-.|+|||+|.+...
T Consensus 34 V~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~-~f~~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 34 IVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKF-NFSKNLSGNYTCEAINKFN 94 (286)
T ss_pred EEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEE-eccccCCCceeEEEeeccc
Confidence 3445666553 34457886421 1122334544 3334458999999987543
No 365
>PHA03282 envelope glycoprotein E; Provisional
Probab=81.46 E-value=4.7 Score=29.46 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=32.5
Q ss_pred ccEEEEEEEeccccceEEEccCCCCCCeEEEEEEecCCCC-CeeeEEEEEE
Q psy15390 92 LKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPP-SVSKRITVDV 141 (142)
Q Consensus 92 ~~~~w~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~~~-~~s~~~~l~V 141 (142)
++.-|...+... +.++.|..+..+|+|.|+..+...... .....+.|.|
T Consensus 111 ~e~~~~~rvs~~-n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V 160 (540)
T PHA03282 111 PEFAWPPRVAVV-NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV 160 (540)
T ss_pred cccccCcceeEe-cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence 456775555554 455999999999999999997543332 2334455555
No 366
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=79.16 E-value=6 Score=28.40 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=16.5
Q ss_pred eEEEeecCCCCCeEEEEEEEecCC
Q psy15390 68 QLNITKISRTEMGAYLCIATKIGP 91 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~~ 91 (142)
.+.+.|+...|.|.|.|.....+.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn~~ 105 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLGDN 105 (500)
T ss_pred EEEecCcccccCCcEEEEEEeCCc
Confidence 467777778888888886554443
No 367
>PHA03271 envelope glycoprotein C; Provisional
Probab=78.99 E-value=15 Score=26.68 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=25.6
Q ss_pred eEEecCCcEEEEEEEecCCCC---eeEEEecCCcceec
Q psy15390 21 VAVREEFNITLTCKAEGFPAP---EIKWRREDNQPISI 55 (142)
Q Consensus 21 ~~~~~g~~v~l~C~~~~~~~~---~~~w~~~~~~~~~~ 55 (142)
..+.+|+...-.|.+...-++ .+.|+. +|.....
T Consensus 255 ~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~-nG~~V~~ 291 (490)
T PHA03271 255 PPVLSGENYKASCIVRHFYPPGSVYVSWRQ-NGNIATP 291 (490)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEe-CCccccC
Confidence 346689999999999874333 689999 7877643
No 368
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=77.36 E-value=3.5 Score=24.07 Aligned_cols=20 Identities=10% Similarity=0.468 Sum_probs=11.6
Q ss_pred eEEEccCCCCCCeEEEEEEe
Q psy15390 107 QLNITKISRTEMGAYLCIAT 126 (142)
Q Consensus 107 ~l~i~~~~~~d~g~y~C~a~ 126 (142)
.|.+.+++.+|++.|.|..+
T Consensus 75 ~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 75 NFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred EEEEcCCCHHHCeEEEEEee
Confidence 35555666666666666444
No 369
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=75.75 E-value=9.2 Score=19.73 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=14.4
Q ss_pred EecCCcEEEEEEEecCCCCeeEEEe
Q psy15390 23 VREEFNITLTCKAEGFPAPEIKWRR 47 (142)
Q Consensus 23 ~~~g~~v~l~C~~~~~~~~~~~w~~ 47 (142)
+..|++++|. |.+...+.||+
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4468888874 44555799984
No 370
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=73.04 E-value=14 Score=20.52 Aligned_cols=53 Identities=9% Similarity=0.149 Sum_probs=30.2
Q ss_pred CCCeEEEEEEEec--CCccEEEEEEEec------------cccceEEE---ccCCCCCCeEEEEEEecCC
Q psy15390 77 TEMGAYLCIATKI--GPLKIFWEIIFHM------------HYGEQLNI---TKISRTEMGAYLCIATNNV 129 (142)
Q Consensus 77 ~d~G~y~C~~~~~--~~~~~~w~~~~~~------------~~~~~l~i---~~~~~~d~g~y~C~a~n~~ 129 (142)
.......|.+.+. +...+.|.+.... ..++.+.+ ..+..++...|+|.+....
T Consensus 14 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 14 SHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 4556789998874 3446788754211 11122222 1233445569999998654
No 371
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=72.29 E-value=15 Score=20.60 Aligned_cols=23 Identities=22% Similarity=0.632 Sum_probs=16.3
Q ss_pred CCCeEEEEEEEec--CCccEEEEEE
Q psy15390 77 TEMGAYLCIATKI--GPLKIFWEII 99 (142)
Q Consensus 77 ~d~G~y~C~~~~~--~~~~~~w~~~ 99 (142)
.+.+.+.|.+.+. +...+.|.+.
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kn 40 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREG 40 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEEC
Confidence 4556889999874 4566789754
No 372
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=71.33 E-value=16 Score=20.39 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=29.1
Q ss_pred EEEEEEEec--CCccEEEEEEEec-----------cccceEEE---ccCCCCCCeEEEEEEecC
Q psy15390 81 AYLCIATKI--GPLKIFWEIIFHM-----------HYGEQLNI---TKISRTEMGAYLCIATNN 128 (142)
Q Consensus 81 ~y~C~~~~~--~~~~~~w~~~~~~-----------~~~~~l~i---~~~~~~d~g~y~C~a~n~ 128 (142)
...|.+.+. +...+.|.++... ..++.+.+ ..+..++...|+|.+...
T Consensus 19 ~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 19 VLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred EEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 578998874 5567789764322 12233332 123455666899999864
No 373
>PHA03269 envelope glycoprotein C; Provisional
Probab=70.88 E-value=41 Score=25.11 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=26.1
Q ss_pred eeEEecCCcEEEEEEEecCCCC---eeEEEecCCcceec
Q psy15390 20 SVAVREEFNITLTCKAEGFPAP---EIKWRREDNQPISI 55 (142)
Q Consensus 20 ~~~~~~g~~v~l~C~~~~~~~~---~~~w~~~~~~~~~~ 55 (142)
...+.+|+...-.|.+...-++ .+.|++ |+..+..
T Consensus 336 p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~-ng~~V~~ 373 (566)
T PHA03269 336 GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS-NFGNIGK 373 (566)
T ss_pred CCccccCCCceEEEEeeeecCCCceEEEEEe-CCcccCc
Confidence 3456789999999999874333 689999 7777653
No 374
>PHA03286 envelope glycoprotein E; Provisional
Probab=70.59 E-value=13 Score=27.12 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=29.4
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
..+.|.|.+++.+++|.|+-...|..+......+.|.|
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV 162 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWV 162 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEE
Confidence 34679999999999999999999887664444444555
No 375
>PHA03283 envelope glycoprotein E; Provisional
Probab=66.64 E-value=28 Score=26.09 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=29.4
Q ss_pred cccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 103 HYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 103 ~~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
.+.+.+.|.+++.+++|.|+-...+..+. ....+.|.||
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~-~~~vflvtVk 169 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMM-KHSVFFVTVK 169 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCce-EEEEEEEEec
Confidence 34678999999999999999999987663 3334446654
No 376
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=66.45 E-value=19 Score=19.59 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCCeeeecCCCCceeEEecC--CcEEEEEEEecCCCCeeEEEecCCccee
Q psy15390 7 VPPNILDTESTPSSVAVREE--FNITLTCKAEGFPAPEIKWRREDNQPIS 54 (142)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~~g--~~v~l~C~~~~~~~~~~~w~~~~~~~~~ 54 (142)
.++.+..|. ....+.+..+ +...|.+++.+. ...+.|+. ||+.+.
T Consensus 9 ~~l~I~~P~-~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~v-dg~~~g 55 (89)
T PF06832_consen 9 SPLRITSPP-DGAVLALDPGIPERQPLVLKAAGG-RGPVYWFV-DGEPLG 55 (89)
T ss_pred CCCEEEecC-CCCEEEeCCCCCccceEEEEEeCC-CCcEEEEE-CCEEcc
Confidence 466666642 2223333332 255666666665 44899999 998873
No 377
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=64.24 E-value=2.2 Score=31.01 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V 141 (142)
.+.|.|.+++.+|+|.|+-...|..+......+.|.|
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v 124 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTV 124 (439)
T ss_dssp -------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEE
Confidence 3458888888888888888887766553333344444
No 378
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=63.94 E-value=19 Score=18.73 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=23.9
Q ss_pred EEEEEEecCCCCeeEEEecCCcceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEe
Q psy15390 30 TLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88 (142)
Q Consensus 30 ~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 88 (142)
+|.|..... .-+.||.++.+.+. ....++.+.+ -.++|.|..+.
T Consensus 2 tltC~s~~s--LPiswYcN~TRLlR---------lt~~Tlt~~~----ltcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSNAS--LPISWYCNGTRLLR---------LTQQTLTVVT----LTCNFTCVGQS 45 (71)
T ss_pred ceecCCCCC--CcccEEECCceeee---------ecCCeEeeee----eeEEeeecCCC
Confidence 467765432 34789994444432 2223444433 34778886543
No 379
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=63.47 E-value=24 Score=19.64 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=28.7
Q ss_pred CeEEEEEEEec--CCccEEEEEEEec------------cccceEEE---ccCCCCCCeEEEEEEecCC
Q psy15390 79 MGAYLCIATKI--GPLKIFWEIIFHM------------HYGEQLNI---TKISRTEMGAYLCIATNNV 129 (142)
Q Consensus 79 ~G~y~C~~~~~--~~~~~~w~~~~~~------------~~~~~l~i---~~~~~~d~g~y~C~a~n~~ 129 (142)
.....|.+.+. ....+.|.++... ..++.+.+ ..+..++...|+|.+....
T Consensus 17 ~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 17 PNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 34689988874 4567788753211 11222221 1223345569999998653
No 380
>PF15096 G6B: G6B family
Probab=62.63 E-value=15 Score=23.49 Aligned_cols=15 Identities=20% Similarity=0.669 Sum_probs=11.6
Q ss_pred cCCCCCeEEEEEEEe
Q psy15390 74 ISRTEMGAYLCIATK 88 (142)
Q Consensus 74 v~~~d~G~y~C~~~~ 88 (142)
+...|+|.|+|..-.
T Consensus 81 Ls~GDSGTFfCkGr~ 95 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQ 95 (224)
T ss_pred hhcCCccceEecCcc
Confidence 367899999998543
No 381
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=58.79 E-value=32 Score=19.50 Aligned_cols=18 Identities=33% Similarity=0.807 Sum_probs=13.7
Q ss_pred EEEEE-EecCCCCeeEEEe
Q psy15390 30 TLTCK-AEGFPAPEIKWRR 47 (142)
Q Consensus 30 ~l~C~-~~~~~~~~~~w~~ 47 (142)
.=.|. +.|.|++.|.|..
T Consensus 24 VA~CiSa~GrPpa~ItW~t 42 (98)
T cd05890 24 VATCVSANGKPPSVVRWDT 42 (98)
T ss_pred EEEEEcCCCcCCcEeEEEc
Confidence 33688 5678888999976
No 382
>PHA03273 envelope glycoprotein C; Provisional
Probab=58.19 E-value=75 Score=23.62 Aligned_cols=34 Identities=9% Similarity=0.309 Sum_probs=26.1
Q ss_pred eeEEecCCcEEEEEEEecCCCC---eeEEEecCCccee
Q psy15390 20 SVAVREEFNITLTCKAEGFPAP---EIKWRREDNQPIS 54 (142)
Q Consensus 20 ~~~~~~g~~v~l~C~~~~~~~~---~~~w~~~~~~~~~ 54 (142)
...+.+|+...-.|.+...-++ .+.|++ ++..+.
T Consensus 244 ~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~-dg~~V~ 280 (486)
T PHA03273 244 VHPSLKGENYRAVCVVASYFPHSSVKLRWYK-NAKEVD 280 (486)
T ss_pred CCccccCCCceEEEEeeeecCCCceEEEEEe-CCeecc
Confidence 3456789999999999874333 689999 888776
No 383
>KOG3611|consensus
Probab=51.51 E-value=25 Score=27.72 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=35.6
Q ss_pred cEEEEEEEecCCCCeeEEEec-CC--cceecCCcceEEeeccceEEEeecCCCCCeEEEEEEEec
Q psy15390 28 NITLTCKAEGFPAPEIKWRRE-DN--QPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI 89 (142)
Q Consensus 28 ~v~l~C~~~~~~~~~~~w~~~-~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 89 (142)
...|.|...+... .+.|+.. .+ ................+.+.+..++..|.|.|.|.+...
T Consensus 571 ~~~l~c~~~~~~a-~~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 571 SEVLRCVPSSNQA-PVVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cceeecccccccc-ceeeEeeccCccccceeccCcceeecccCceeEEEEeeccCcccccccccC
Confidence 4677887655444 3778742 22 111111111212223455888899999999999988754
No 384
>PHA03281 envelope glycoprotein E; Provisional
Probab=49.93 E-value=60 Score=24.67 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=27.7
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEEEEC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l~V~ 142 (142)
..+.|.|.+++.+++|.|+-...+..|...-..+.|.||
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVk 334 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLK 334 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEec
Confidence 356799999999999999998886655432223445553
No 385
>PHA03286 envelope glycoprotein E; Provisional
Probab=45.99 E-value=72 Score=23.64 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=23.5
Q ss_pred eEEEccCCCCCCeEEEEEEecCCCCCeeeEEE
Q psy15390 107 QLNITKISRTEMGAYLCIATNNVPPSVSKRIT 138 (142)
Q Consensus 107 ~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~ 138 (142)
.|.+.++..+++|.|.|.+.-...+ ..|...
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNGH~-eAWtYt 338 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNGRP-LAWTYV 338 (492)
T ss_pred ceeecCCCcccCceEEEEEEECCcc-eeeeEE
Confidence 5888999999999999999744333 356554
No 386
>PHA02935 Hypothetical protein; Provisional
Probab=43.13 E-value=41 Score=21.88 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=12.3
Q ss_pred EEEeecCCCCCeEEEEEE
Q psy15390 69 LNITKISRTEMGAYLCIA 86 (142)
Q Consensus 69 l~i~~v~~~d~G~y~C~~ 86 (142)
|.|..++-+|+|.|.-..
T Consensus 104 lnisslryedsgsykgvs 121 (349)
T PHA02935 104 LNISSLRYEDSGSYKGVS 121 (349)
T ss_pred eeccceeeccCCcccCch
Confidence 566667778888876543
No 387
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=40.62 E-value=67 Score=17.95 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=21.3
Q ss_pred CCceeEEecCCcEEEEEEEecCCCC-eeEEEe
Q psy15390 17 TPSSVAVREEFNITLTCKAEGFPAP-EIKWRR 47 (142)
Q Consensus 17 ~~~~~~~~~g~~v~l~C~~~~~~~~-~~~w~~ 47 (142)
.|+...+..|+++.+.|..+ -+.+ .+.|..
T Consensus 9 ~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET 39 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTS-CPQPEKIGLET 39 (91)
T ss_dssp ESSEEEEETTEEEEEEEEES-SSS-SEEEEES
T ss_pred ECCccEECCCCCEEEEEcCC-CCCCCcceEEE
Confidence 56777889999999999874 3433 455544
No 388
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=35.76 E-value=1.1e+02 Score=19.15 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=20.4
Q ss_pred cceEEEccCCCCCCeEEEEEEecCC
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNV 129 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~ 129 (142)
.--|.|.+.+.+|+|.|.-++.=..
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECC
Confidence 3358899999999999999998443
No 389
>PHA03282 envelope glycoprotein E; Provisional
Probab=35.48 E-value=1.1e+02 Score=22.94 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=23.5
Q ss_pred ceEEEccCCCCCCeEEEEEEecCCCCCeeeEEE
Q psy15390 106 EQLNITKISRTEMGAYLCIATNNVPPSVSKRIT 138 (142)
Q Consensus 106 ~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~ 138 (142)
-.|.+.++..+++|.|.|++.-.-.. ..|...
T Consensus 333 VdL~F~nAp~saSGLYVfVl~yNGHV-eAW~Yt 364 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVYVNGHV-HAWGHV 364 (540)
T ss_pred cceEecCCCcccCceEEEEEEECCee-eeeEEE
Confidence 36888999999999999999743322 355443
No 390
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=34.88 E-value=1.2e+02 Score=18.99 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=5.5
Q ss_pred CCeEEEEEEecC
Q psy15390 117 EMGAYLCIATNN 128 (142)
Q Consensus 117 d~g~y~C~a~n~ 128 (142)
|.+.|+|.+..+
T Consensus 71 d~~~~sC~I~RP 82 (158)
T PF10572_consen 71 DNGHYSCIIWRP 82 (158)
T ss_pred CCCceEEEEECC
Confidence 334455554433
No 391
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=30.71 E-value=92 Score=18.91 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=17.0
Q ss_pred EEecCCcEEEEEEEecCC-----CCeeEEEecCCc
Q psy15390 22 AVREEFNITLTCKAEGFP-----APEIKWRREDNQ 51 (142)
Q Consensus 22 ~~~~g~~v~l~C~~~~~~-----~~~~~w~~~~~~ 51 (142)
.+..|+++.++|...... ...+.++..+|+
T Consensus 43 ~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGk 77 (137)
T PF12988_consen 43 KIKKGETVEIRCELKREGNYADTRYTIRYFQPDGK 77 (137)
T ss_dssp S--TTEEEEEEEEEEESS--SS---EEEEE-SSS-
T ss_pred ccCCCCEEEEEEEEecCceecccEEEEEEEeecCC
Confidence 467899999999986522 224566654443
No 392
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=28.37 E-value=1.3e+02 Score=19.34 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=18.6
Q ss_pred eEEEeecCCCCCeEEEEEEEecCCcc
Q psy15390 68 QLNITKISRTEMGAYLCIATKIGPLK 93 (142)
Q Consensus 68 ~l~i~~v~~~d~G~y~C~~~~~~~~~ 93 (142)
.+.++.|+..-+|.|+|.+...+.-.
T Consensus 94 ~mt~hQVN~DGaGP~~C~iD~tg~g~ 119 (184)
T PF11327_consen 94 SMTIHQVNADGAGPFTCDIDETGTGT 119 (184)
T ss_pred EEEEEEecCCCCcCeEEEECCCCCcc
Confidence 46778888877888888776555443
No 393
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=27.92 E-value=83 Score=23.26 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=22.4
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCCCCCeeeEEEE
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITV 139 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~l 139 (142)
+.-.|.+.++..+++|.|.|.+.-.-.. ..|...+
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~nghv-~aW~yt~ 301 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYYNGHV-EAWTYTL 301 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEETTEE-EEEEEEE
T ss_pred CCcceEecCCCcccCceEEEEEEECCee-eeeEEEE
Confidence 3456889999999999999999744322 4565543
No 394
>COG5475 Uncharacterized small protein [Function unknown]
Probab=26.89 E-value=96 Score=15.59 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=8.2
Q ss_pred eEEEEEEecCCCC
Q psy15390 119 GAYLCIATNNVPP 131 (142)
Q Consensus 119 g~y~C~a~n~~~~ 131 (142)
|.|.|+=.+..|.
T Consensus 29 Gmy~C~Wf~g~g~ 41 (60)
T COG5475 29 GMYECRWFDGYGV 41 (60)
T ss_pred CeEEEEEecCCCc
Confidence 6666666665554
No 395
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=23.51 E-value=43 Score=14.99 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=6.7
Q ss_pred CCCCeEEEEE
Q psy15390 115 RTEMGAYLCI 124 (142)
Q Consensus 115 ~~d~g~y~C~ 124 (142)
..+.|.|.|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 3467888884
No 396
>KOG3743|consensus
Probab=22.28 E-value=1.1e+02 Score=23.31 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=20.0
Q ss_pred ceeEEecCCcEEEEEEEecCCCCeeEEEe
Q psy15390 19 SSVAVREEFNITLTCKAEGFPAPEIKWRR 47 (142)
Q Consensus 19 ~~~~~~~g~~v~l~C~~~~~~~~~~~w~~ 47 (142)
+.-.+.-|..|.|-|.+.|...|.+...+
T Consensus 376 r~g~i~ygsvV~LV~~vTG~~lppLIIRK 404 (622)
T KOG3743|consen 376 RDGYIKYGSVVKLVCSVTGITLPPLIIRK 404 (622)
T ss_pred CCcceeeccEEEEEeecccccCCcceeee
Confidence 34456779999999999996555443333
No 397
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=22.26 E-value=66 Score=21.77 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=5.8
Q ss_pred cCCCCCCeEEEE
Q psy15390 112 KISRTEMGAYLC 123 (142)
Q Consensus 112 ~~~~~d~g~y~C 123 (142)
+++..|+|+|+-
T Consensus 79 Svt~dda~~YTV 90 (292)
T PRK15372 79 SVTLDDVGNYTV 90 (292)
T ss_pred EEEEcCCCceEE
Confidence 444455555543
No 398
>PHA03290 envelope glycoprotein I; Provisional
Probab=22.21 E-value=1.4e+02 Score=21.29 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.5
Q ss_pred ccceEEEccCCCCCCeEEEEEEecC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNN 128 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~ 128 (142)
..--|.|.+...+|+|.|.-++.=.
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeC
Confidence 3446789999999999999998743
No 399
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.71 E-value=3.2e+02 Score=20.96 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=23.9
Q ss_pred cceEEEccCCCCCCeEEEEEEecCCCCCeeeEEE
Q psy15390 105 GEQLNITKISRTEMGAYLCIATNNVPPSVSKRIT 138 (142)
Q Consensus 105 ~~~l~i~~~~~~d~g~y~C~a~n~~~~~~s~~~~ 138 (142)
+-.|.+.++..+++|.|.|.+.-.-.. ..|...
T Consensus 314 ~v~L~f~nap~~~SGLYVfVv~yNgHv-eAW~Yt 346 (542)
T PHA03283 314 RVDLLFKNAPASASGLYVFVLLYNGHP-EAWTYT 346 (542)
T ss_pred CcceEeccCCcccCceEEEEEEECCee-eeeEEE
Confidence 446888999999999999999743332 355544
No 400
>PHA03292 envelope glycoprotein I; Provisional
Probab=20.19 E-value=3.5e+02 Score=19.79 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=20.9
Q ss_pred ccceEEEccCCCCCCeEEEEEEecCC
Q psy15390 104 YGEQLNITKISRTEMGAYLCIATNNV 129 (142)
Q Consensus 104 ~~~~l~i~~~~~~d~g~y~C~a~n~~ 129 (142)
...-|.|.+...+|+|.|.-++.=..
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCC
Confidence 34568889999999999999987443
Done!