RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15390
(142 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 84.5 bits (209), Expect = 8e-21
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+ ++ P+ +E + + C P I W+ + + + K + +
Sbjct: 96 KIFQKLMFKN-APTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDVRFIVLS 153
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
L I I +T+ G Y C
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGR 175
Score = 66.8 bits (163), Expect = 2e-14
Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 59/191 (30%)
Query: 11 ILDTESTPSSVAVREEFNITLTCKAEGFPA-PEIKWRREDNQPISINKRKKVHMHYGEQ- 68
+L + PS + + C+ G +I W + + +S N+++ + +
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 69 --LNITKISRTEMGAYLCIAT--------KIGPLKIFWEIIFH----------------- 101
L I + + G Y C+ T +KIF +++F
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 102 -------------MHYGEQLNITK----------------ISRTEMGAYLCIATNNVPPS 132
H G + + K I +T+ G Y C
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 133 V-SKRITVDVE 142
+ K I V V
Sbjct: 182 INFKDIQVIVN 192
Score = 63.0 bits (153), Expect = 6e-13
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQ--PISINKRKKVHMH 64
VPP + +S + ++TL C A+GFP P + W ++ + K +
Sbjct: 193 VPPTVQARQS-IVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 251
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
+L I + + + Y+CIA
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAE 274
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 72.5 bits (178), Expect = 4e-17
Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 56/186 (30%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM---H 64
++ P + V + + L C EG P+I+W + D + + + + H
Sbjct: 2 GLKLM---GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLDQLYIPVSEQH 57
Query: 65 YGEQLNITKISRTEMGAYLCIAT-KIG--------------------------------- 90
+ L++ + R++ G Y C
Sbjct: 58 WIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQ 117
Query: 91 ----------PLKIFW----EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKR 136
P+ I W I + T+ + C A N + S+
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGPAPSP-SVLNVTGVTQSTMFSCEAHNLKGLASSRT 176
Query: 137 ITVDVE 142
TV ++
Sbjct: 177 ATVHLQ 182
Score = 50.6 bits (121), Expect = 9e-09
Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 13/82 (15%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHY 65
P P +AV L+C+A G P P I W R I
Sbjct: 97 GVPFFT---VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIGGPAPSP----- 147
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
+ T+ + C A
Sbjct: 148 ---SVLNVTGVTQSTMFSCEAH 166
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 70.9 bits (174), Expect = 2e-16
Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 56/187 (29%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
P I + +V E T C E +P PEI W R + I + + G+
Sbjct: 7 APVIT---TPLETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLFDTRYSIRENGQ 62
Query: 68 QLNITKISRTEMGAYLCIAT-KIG------------------------------------ 90
L I + ++ G Y C A +G
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC 122
Query: 91 ------PLKIFW----EII-----FHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSK 135
+ W + + L I + + + G Y C+A N++ + SK
Sbjct: 123 TTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Query: 136 RITVDVE 142
+ ++VE
Sbjct: 183 LVKLEVE 189
Score = 67.4 bits (165), Expect = 5e-15
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
+ P I P +V + E L C G P P + W + + + N R + +
Sbjct: 99 MKPKIT---RPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALRENSR--IAVLES 152
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I + + + G Y C+A
Sbjct: 153 GSLRIHNVQKEDAGQYRCVAK 173
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 70.4 bits (172), Expect = 3e-16
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKIS 75
+ S + + ++TLT ++ +P ++ R + I K L+++++
Sbjct: 102 TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLE 151
Query: 76 RTEMGAYLCIAT 87
+ G + C
Sbjct: 152 LQDSGTWTCTVL 163
Score = 66.5 bits (162), Expect = 1e-14
Identities = 21/175 (12%), Positives = 47/175 (26%), Gaps = 54/175 (30%)
Query: 20 SVAVREEFNITLTCKAEGFPAPEIKWRREDNQPI-----------------SINKRKKVH 62
V ++ + LTC A + + W+ + I + R+ +
Sbjct: 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW 63
Query: 63 MHYGEQLNITKISRTEMGAYLCIAT---------------------KIG----------- 90
L I + + Y+C G
Sbjct: 64 DQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPP 123
Query: 91 --PLKIFW--EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141
+ ++ G+ L+++++ + G + C N V +I + V
Sbjct: 124 GSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ-KKVEFKIDIVV 177
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 70.8 bits (173), Expect = 4e-16
Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 32/129 (24%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
S+ V + E + L+C GF +P ++W+ + + Y ++ +
Sbjct: 8 HSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVC-------YNNKITASYE 60
Query: 75 SRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVS 134
R + ++R + G Y C+ + S
Sbjct: 61 DRVTFL------------------------PTGITFKSVTREDTGTYTCMVSEEGGNSYG 96
Query: 135 K-RITVDVE 142
+ ++ + V
Sbjct: 97 EVKVKLIVL 105
Score = 57.3 bits (138), Expect = 4e-11
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHY 65
VPP+ + + LTC +G P E W + D + N +
Sbjct: 106 VPPSK---PTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTRAFSN 161
Query: 66 GE--------QLNITKISRTEMGAYLCIAT 87
+L +S ++ G Y C A
Sbjct: 162 SSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 67.9 bits (166), Expect = 8e-16
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 35/135 (25%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PP I+ PS + V + TL CKAEG P P I+W + + + +K
Sbjct: 8 FPPRIV---EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRM- 62
Query: 67 EQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIAT 126
G L ++ + SR + G Y+C+A
Sbjct: 63 -------------------LLPSGSLFFL-----------RIVHGRKSRPDEGVYVCVAR 92
Query: 127 NNVPPSVSKRITVDV 141
N + +VS +++V
Sbjct: 93 NYLGEAVSHDASLEV 107
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 66.3 bits (162), Expect = 2e-15
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
S PP IL P++ + + L CKA G P P I W +E + R +
Sbjct: 6 SGPPIILQG---PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI-QEQ 61
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
G L I + ++ G Y C+AT
Sbjct: 62 GT-LQIKNLRISDTGTYTCVAT 82
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 68.3 bits (167), Expect = 2e-15
Identities = 31/193 (16%), Positives = 55/193 (28%), Gaps = 62/193 (32%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFP-APEIKWRREDNQPISINKRKKVHMHYG 66
+ + PS + + C+ G +I W + + +S N+++ +
Sbjct: 2 VLQV---DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND 58
Query: 67 EQ---LNITKISRTEMGAYLCIAT-KIG-------------------------------- 90
+ L I + + G Y C+ T + G
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDA 118
Query: 91 ----------PLKIFW-----EII------FHMHYGEQLNITKISRTEMGAYLCIATNNV 129
P I W ++I F + L I I +T+ G Y C
Sbjct: 119 VIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA 178
Query: 130 PPSV-SKRITVDV 141
+ K I V V
Sbjct: 179 RGEINFKDIQVIV 191
Score = 67.5 bits (165), Expect = 4e-15
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
+ P+ +E + + C P I W+ + + + K + +
Sbjct: 99 QKLMFKNA---PTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDVRFIVLSN 154
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I I +T+ G Y C
Sbjct: 155 NYLQIRGIKKTDEGTYRCEGR 175
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 65.8 bits (161), Expect = 3e-15
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PP + P ++++ E + K G PAP++ W + + + + K+ +
Sbjct: 4 GPPRFI---QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVSEK 59
Query: 67 --EQLNITKISRTEMGAYLCIAT 87
L + ++ GAY C+A
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAK 82
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 68.5 bits (167), Expect = 3e-15
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINK--------RKKVHMHYG 66
+ S V V E +I LTC GF +P ++W+ ++
Sbjct: 5 YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS 64
Query: 67 EQLNITKISRTEMGAYLCIAT 87
+ + ++R + G Y C+ +
Sbjct: 65 SGITFSSVTRKDNGEYTCMVS 85
Score = 56.9 bits (137), Expect = 5e-11
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHY 65
VPP+ + +V LTC +G P E W ++ ++ + +K
Sbjct: 103 VPPSKP---TISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159
Query: 66 GE--------QLNITKISRTEMGAYLCIAT 87
L ++ + G Y C A
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 67.5 bits (165), Expect = 4e-15
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
S+P + + + +T +C+A G P P I W R + + I N++ +
Sbjct: 1 SMPAISMPQK--SFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYIL-KGS 56
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
+L + I ++ G Y+C AT
Sbjct: 57 NTELTVRNIINSDGGPYVCRAT 78
Score = 59.1 bits (143), Expect = 7e-12
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
V P+I+ + E +TL C AEG P PEI W+R + K +
Sbjct: 94 VQPHII----QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIE 149
Query: 67 EQ-------LNITKISRTEMGAYLCIAT 87
+ L+I + ++ G Y C A
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAA 177
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 64.8 bits (158), Expect = 6e-15
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P + T S +VR ++T C A+ PA + W R N + M +
Sbjct: 9 PIMV--TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-----AMDFN 61
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I + ++ G Y+C +
Sbjct: 62 GILTIRNVQPSDAGTYVCTGS 82
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 66.7 bits (163), Expect = 7e-15
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
S ++ + + C+ PAP + W N+ ++ + M L I I
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLANNNLQILNI 64
Query: 75 SRTEMGAYLCIAT 87
++++ G Y C
Sbjct: 65 NKSDEGIYRCEGR 77
Score = 66.0 bits (161), Expect = 2e-14
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+VPP I + + +T +C+A G P P I W R + + I N++ +
Sbjct: 94 NVPPAISMPQ-KSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYIL-KGS 150
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
+L + I ++ G Y+C AT
Sbjct: 151 NTELTVRNIINSDGGPYVCRAT 172
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 64.7 bits (158), Expect = 9e-15
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
V P I + +I ++C A G P P+I W + DN+ + + + +
Sbjct: 8 RVAPTIT---GNLENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVEDSG--IVLKD 61
Query: 66 GEQ-LNITKISRTEMGAYLCIAT 87
G + L I ++ + + G Y C A
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQAC 84
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 67.9 bits (166), Expect = 9e-15
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
S ++ + + C+ PAP + W N+ ++ + M
Sbjct: 97 QKLTFR---EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLAN 152
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I I++++ G Y C
Sbjct: 153 NNLQILNINKSDEGIYRCEGR 173
Score = 65.6 bits (160), Expect = 8e-14
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+VPP I + + +T +C+A G P P I W R + + I N++ +
Sbjct: 190 NVPPAISMPQ-KSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYIL-KGS 246
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
+L + I ++ G Y+C AT
Sbjct: 247 NTELTVRNIINSDGGPYVCRAT 268
Score = 57.1 bits (138), Expect = 9e-11
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH-Y 65
+ + S V + + TC A G P I W + I +R V
Sbjct: 3 ALLQV---TISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGV 58
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
+L I + + G Y C AT
Sbjct: 59 RSRLTIYNANIEDAGIYRCQAT 80
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 66.4 bits (162), Expect = 1e-14
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQ-----PISINKRKKV 61
P+I S E + + CK+ G+P PE WR+++N S + +
Sbjct: 91 AAPDIT---GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFII 147
Query: 62 HMHYGEQLNITKISRTE-MGAYLCIAT 87
+ +LNI + TE G Y C AT
Sbjct: 148 NKENYTELNIVNLQITEDPGEYECNAT 174
Score = 65.6 bits (160), Expect = 2e-14
Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 70/196 (35%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEI--KWRREDNQPISINKRKKVHMH 64
P I+ ++ + +TL C + W + + ++ ++
Sbjct: 2 NEPRIV---TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTATRK----NA 53
Query: 65 YGEQLNITKISRTEMGAYLCIATKIG---------------------------------- 90
+ I K + G Y C+ +
Sbjct: 54 SNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMY 113
Query: 91 -------PLKIFWE-----------------IIFHMHYGEQLNITKISRTE-MGAYLCIA 125
+ W I + +LNI + TE G Y C A
Sbjct: 114 CKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNA 173
Query: 126 TNNVPPSVSKRITVDV 141
TN++ S S + V
Sbjct: 174 TNSI-GSASVSTVLRV 188
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 66.3 bits (162), Expect = 1e-14
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
P SV V E T GFP PE+ W R D Q IS + V + + +
Sbjct: 5 APTFT---QPLQSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLPGVQISFSD 60
Query: 68 ---QLNITKISRTEMGAYLCIAT 87
+L I +++ G Y AT
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKAT 83
Score = 63.6 bits (155), Expect = 1e-13
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
++ PPN + S+ VR+ + L + G P P +K+ R D I + ++
Sbjct: 100 ETAPPNFV---QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEIQSSLDFQISQE 155
Query: 65 YGEQ-LNITKISRTEMGAYLCIAT 87
L I + + G Y AT
Sbjct: 156 GDLYSLLIAEAYPEDSGTYSVNAT 179
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 63.9 bits (156), Expect = 1e-14
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+PP I + PS +++ E +T+ C G P PE+ W + I ++ + H+
Sbjct: 3 GIPPKIE---ALPSDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQEQGRFHIEN 58
Query: 66 GE---QLNITKISRTEMGAYLCIAT 87
+ L I + + + G Y
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLG 83
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 67.5 bits (165), Expect = 1e-14
Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 59/191 (30%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PP + S V+++ + CK G P ++ W + D I + + ++
Sbjct: 97 EPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVES 153
Query: 67 E-QLNITKISRTEMGAYLCIAT-KIG---------------------------------- 90
L + +S + G Y C A G
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 213
Query: 91 -------PLKIFWE------------IIFHMHYGEQLNITKISRTEMGAYLCIATNNVPP 131
P ++ W I ++ ++I + ++G Y C A+N+V
Sbjct: 214 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV-G 272
Query: 132 SVSKRITVDVE 142
S + ++ ++
Sbjct: 273 SYTCVGSITLK 283
Score = 64.4 bits (157), Expect = 2e-13
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM-HY 65
PP + P SV + + T C G +I W + DN+ I K+ +
Sbjct: 4 APPFF---DLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVEN 59
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
L + K+++ + G Y C A+
Sbjct: 60 TATLTVLKVTKGDAGQYTCYAS 81
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 63.9 bits (156), Expect = 2e-14
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
++ IL + P S+ V E + +C +G P P + W R Q +S + R +V
Sbjct: 12 TLAARIL---TKPRSMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVLSTSARHQVTTTK 67
Query: 66 GE-QLNITKISRTEMGAYLCIAT 87
+ I+ + ++ G Y +
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVE 90
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 63.9 bits (156), Expect = 2e-14
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S P+ L P + V+E + CK G P P++ W+ D +P+ + K+
Sbjct: 3 SGSSGFRPHFL---QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVRPDSAHKM 58
Query: 62 HMHYGEQ--LNITKISRTEMGAYLCIAT 87
+ L I ++ + G Y CIAT
Sbjct: 59 LVRENGVHSLIIEPVTSRDAGIYTCIAT 86
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 63.4 bits (155), Expect = 2e-14
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PP + +VRE ++ ++ + +G P P + W R + QP+ ++R+ G
Sbjct: 4 APPTFK---VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQRRFAEEAEG 59
Query: 67 E--QLNITKISRTEMGAYLCIAT 87
+L I R + G Y C A
Sbjct: 60 GLCRLRILAAERGDAGFYTCKAV 82
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 63.6 bits (155), Expect = 3e-14
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
P + P S V E ++ L C+ P P++ W+R +N+ + N +
Sbjct: 12 HKRAPMFI---YKPQSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQFNTDRISLYQ 67
Query: 65 YGE---QLNITKISRTEMGAYLCIAT 87
L I +++ + G Y A
Sbjct: 68 DNTGRVTLLIKDVNKKDAGWYTVSAV 93
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 66.8 bits (163), Expect = 5e-14
Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 61/191 (31%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH-Y 65
PP P V + ++ L C+ +G P ++ W + D + + K+ K+ +
Sbjct: 383 EPPVF---RKKPHPVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSGKKYKIMSENF 438
Query: 66 GEQLNITKISRTEMGAYLCIAT-KIG---------------------------------- 90
++I + ++G Y C A+ +G
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQ 498
Query: 91 -------PLKIFWE-------------IIFHMHYGEQLNITKISRTEMGAYLCIATNNVP 130
P+ + W I + L ++ G Y C N
Sbjct: 499 ATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEA- 557
Query: 131 PSVSKRITVDV 141
+ T+ V
Sbjct: 558 GTQECFATLSV 568
Score = 66.8 bits (163), Expect = 5e-14
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM- 63
VPP + P SV + + T C G +I W + DN+ I K+ +
Sbjct: 194 HEVPPFF---DLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLV 249
Query: 64 HYGEQLNITKISRTEMGAYLCIAT 87
L + K+++ + G Y C A+
Sbjct: 250 ENTATLTVLKVTKGDAGQYTCYAS 273
Score = 64.1 bits (156), Expect = 4e-13
Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 63/198 (31%)
Query: 3 AYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV- 61
+ +PP+ V F + C+ G ++ W + D + + + +
Sbjct: 96 KERKLPPSF---ARKLKDVHETLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANLQTS 151
Query: 62 HMHYGEQLNITKISRTEMGAYLCIAT-KIG------------------------------ 90
+H L I + ++ +G Y C A+ +G
Sbjct: 152 FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211
Query: 91 --------------PLKIFWE------------IIFHMHYGEQLNITKISRTEMGAYLCI 124
P+KI W + + L + K+++ + G Y C
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271
Query: 125 ATNNVPPSVSKRITVDVE 142
A+N S + V+
Sbjct: 272 ASNVA-GKDSCSAQLGVQ 288
Score = 62.1 bits (151), Expect = 2e-12
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
PP ++ V ITL CK +G P I W + ++ + K+
Sbjct: 5 PPYFIEP---LEHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYKMQFKNNV 60
Query: 68 -QLNITKISRTEMGAYLCIAT 87
L I K+ +++G Y C A
Sbjct: 61 ASLVINKVDHSDVGEYTCKAE 81
Score = 61.0 bits (148), Expect = 6e-12
Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 59/191 (30%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PP + S V+++ + CK G P ++ W + D I + + ++
Sbjct: 289 EPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVES 345
Query: 67 E-QLNITKISRTEMGAYLCIAT-KIG---------------------------------- 90
L + +S + G Y C A G
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 405
Query: 91 -------PLKIFW----EII-----FHMH---YGEQLNITKISRTEMGAYLCIATNNVPP 131
P ++ W + + + + ++I + ++G Y C A+N+V
Sbjct: 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV-G 464
Query: 132 SVSKRITVDVE 142
S + ++ ++
Sbjct: 465 SDTCVGSITLK 475
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 64.8 bits (158), Expect = 5e-14
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
+ S ++ + + C+ PAP + W N+ ++ + M
Sbjct: 95 QKLTFREV---VSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLAN 150
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I I++++ G Y C
Sbjct: 151 NNLQILNINKSDEGIYRCEGR 171
Score = 61.0 bits (148), Expect = 1e-12
Identities = 31/190 (16%), Positives = 49/190 (25%), Gaps = 60/190 (31%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
+ + S V + + TC A G P + + I +R V
Sbjct: 2 LLQVT---ISLSKVELSVGESKFFTCTAIGEPESIDWYNP-QGEKIISTQRVVVQKEGVR 57
Query: 68 -QLNITKISRTEMGAYLCIAT-KIG----------------------------------- 90
+L I + + G Y C AT G
Sbjct: 58 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 117
Query: 91 -------PLKIFW-----EII------FHMHYGEQLNITKISRTEMGAYLCIATNNVPPS 132
+ W E+ F M L I I++++ G Y C
Sbjct: 118 CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGE 177
Query: 133 V-SKRITVDV 141
+ + I V V
Sbjct: 178 IDFRDIIVIV 187
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 63.2 bits (154), Expect = 5e-14
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
S PP I P + V + L+C A G P P I WR++ + + R +
Sbjct: 6 SGPPVIR---QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR--IKQLE 60
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
L I + G Y CIA+
Sbjct: 61 NGVLQIRYAKLGDTGRYTCIAS 82
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 66.4 bits (161), Expect = 5e-14
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKIS 75
+ S + + ++TLT ++ +P ++ R + I K L+++++
Sbjct: 101 TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLE 150
Query: 76 RTEMGAYLCIAT 87
+ G + C
Sbjct: 151 LQDSGTWTCTVL 162
Score = 61.0 bits (147), Expect = 4e-12
Identities = 21/174 (12%), Positives = 47/174 (27%), Gaps = 54/174 (31%)
Query: 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPI-----------------SINKRKKVHM 63
V ++ + LTC A + + W+ + I + R+ +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 64 HYGEQLNITKISRTEMGAYLCIAT---------------------KIG------------ 90
L I + + Y+C G
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPG 123
Query: 91 -PLKIFW--EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141
+ ++ G+ L+++++ + G + C N V +I + V
Sbjct: 124 SSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ-KKVEFKIDIVV 176
Score = 40.6 bits (94), Expect = 6e-05
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 21 VAVREEFNITLTCKAEGFPAPEIKWR-REDNQPISINKRKKVHMHYGEQLNITKISRTEM 79
V + LTC+ G +P++ + +N+ ++KR + E
Sbjct: 291 VMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR----------EKAVWVLNPEA 340
Query: 80 GAYLCIA 86
G + C+
Sbjct: 341 GMWQCLL 347
Score = 34.4 bits (78), Expect = 0.008
Identities = 15/150 (10%), Positives = 39/150 (26%), Gaps = 40/150 (26%)
Query: 30 TLTCKAEGFPAPE--IKWRREDNQPISINKRKKVHMHYGE----QLNITKISRTEM--GA 81
L +AE + + I + ++ + + + G+ L + + G
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271
Query: 82 YLCIAT-KIG------------------------------PLKIFWEII-FHMHYGEQLN 109
K G L + ++ ++
Sbjct: 272 LTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331
Query: 110 ITKISRTEMGAYLCIATNNVPPSVSKRITV 139
+ E G + C+ +++ + I V
Sbjct: 332 AVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 64.7 bits (158), Expect = 6e-14
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
++ P+ ++ VR + N TL CK G P P +KW R+ + I+ + ++
Sbjct: 2 AMAPHFK---EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 66 GE--QLNITKISRTEMGAYLCIAT 87
G QL I ++ + Y AT
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRAT 82
Score = 59.0 bits (143), Expect = 9e-12
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
K P L +V +++ G P P I W++ I N +V +
Sbjct: 101 KIHLPKTL---EGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVT 156
Query: 65 YGEQ--LNITKISRTEMGAYLCIAT 87
+ + R + G Y+ A
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAK 181
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 66.3 bits (162), Expect = 7e-14
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
I D V V E + C+A+G P P I W +S ++ +
Sbjct: 384 RARIRDR--KAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG 441
Query: 68 QLNITKISRTEMGAYLCIAT 87
L + + G YLCIA
Sbjct: 442 TLEVRYAQVQDNGTYLCIAA 461
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 64.5 bits (157), Expect = 8e-14
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PP TP + C+A G P P+I W + + +S + + + G
Sbjct: 5 TPPRFT---RTPVDQTGVSGGVASFICQATGDPRPKIVWNK-KGKKVSNQRFEVIEFDDG 60
Query: 67 E--QLNITKISRTE-MGAYLCIAT 87
L I + Y C+A+
Sbjct: 61 SGSVLRIQPLRTPRDEAIYECVAS 84
Score = 57.1 bits (138), Expect = 4e-11
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
P I P V T+ C A G P PEI W + D P+ +
Sbjct: 105 PRGFPTID---MGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDTSNNNGRIKQ 160
Query: 65 YGEQ----LNITKISRTEMGAYLCIAT 87
+ L I + ++ G Y C+AT
Sbjct: 161 LRSESIGALQIEQSEESDQGKYECVAT 187
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 65.6 bits (160), Expect = 1e-13
Identities = 31/173 (17%), Positives = 53/173 (30%), Gaps = 56/173 (32%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
L PS+V E + L C G+P P W R + I + +K +
Sbjct: 221 QLYFL---QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGGSN 276
Query: 68 QLNITKISRTEMGAYLCIAT-KIG------------------------------------ 90
L I+ ++ + G Y C+ T K
Sbjct: 277 -LLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECA 335
Query: 91 -----PLKIFW----EII-----FHMHYGEQLNITKISRTEMGAYLCIATNNV 129
+ W +++ F + G L I + +++ G Y C+A N
Sbjct: 336 VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEA 388
Score = 64.9 bits (158), Expect = 2e-13
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
VPP L + PS++ E +I C G P P + W + + + + + G
Sbjct: 311 VPPWFL---NHPSNLYAYESMDIEFECAVSGKPVPTVNWMK-NGDVVIPSDY--FQIVGG 364
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I + +++ G Y C+A
Sbjct: 365 SNLRILGVVKSDEGFYQCVAE 385
Score = 58.3 bits (141), Expect = 4e-11
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMH 64
+ + S PS N+ L C AE P IKW++ D +++ +
Sbjct: 19 RRSLHFV---SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK-DGLILALGMDDRKQQL 74
Query: 65 YGEQLNITKISRTEM-----GAYLCIAT 87
L I I + G Y C A+
Sbjct: 75 PNGSLLIQNILHSRHHKPDEGLYQCEAS 102
Score = 56.0 bits (135), Expect = 3e-10
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P S S+ + L C+ G P P I W++ I +V +
Sbjct: 120 GPLRF---LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS 176
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I+++ + G Y C A
Sbjct: 177 GALQISRLQPGDSGVYRCSAR 197
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 61.6 bits (150), Expect = 1e-13
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ PP L P V V L C G P P + W + Q ++ ++R
Sbjct: 10 QGSPPCFL---RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAASERLSFPAD 65
Query: 65 YGE-QLNITKISRTEMGAYLCIAT 87
E L +T T+ G Y+C A
Sbjct: 66 GAEHGLLLTAALPTDAGVYVCRAR 89
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 64.0 bits (156), Expect = 1e-13
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+ PP I+ P + VR + C A G P P I WR+ + + +S + + +
Sbjct: 4 AHPPEII---RKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVLEQ 59
Query: 66 GEQLNITKISRTE----MGAYLCIAT 87
++I +I Y C+A
Sbjct: 60 PGGISILRIEPVRAGRDDAPYECVAE 85
Score = 57.9 bits (140), Expect = 2e-11
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ P I P + + + +TCKA G P P I W + + + ++ +
Sbjct: 107 PAGFPVIT---QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNP--RYSL 160
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
L I + G Y C+A
Sbjct: 161 KDGFLQIENSREEDQGKYECVAE 183
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 61.3 bits (149), Expect = 1e-13
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
++ P AV +TLTC+ P+P+I W + D P+ +
Sbjct: 10 EVQLV---VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLPPSP-------- 57
Query: 68 QLNITKISRTEMGAYLCIAT 87
L + +I + G Y C+AT
Sbjct: 58 VLILPEIGPQDQGTYSCVAT 77
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 63.7 bits (155), Expect = 2e-13
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S I P S AV + L C+A G P + +W + N+ I
Sbjct: 12 SGLVPRGSKIT---VNPESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEIPNGN---- 63
Query: 62 HMHYGEQLNITKISRTEMGAYLCIAT 87
+L + + G Y+C
Sbjct: 64 ----TSELIFNAVHVKDAGFYVCRVN 85
Score = 56.0 bits (135), Expect = 1e-10
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 12/86 (13%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
I P+S + + L C A G P P +W + + P++ +K
Sbjct: 112 DGVSESKLQIC---VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETKKL- 166
Query: 62 HMHYGEQLNITKISRTEMGAYLCIAT 87
+ + G Y C
Sbjct: 167 -------YMVPYVDLEHQGTYWCHVY 185
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 63.4 bits (154), Expect = 2e-13
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
K P +I+ V N+TL C A G P P+I+WR+ +P+
Sbjct: 110 KPYPADIV---VQFKDVYALMGQNVTLECFALGNPVPDIRWRK-VLEPMPSTAE---IST 162
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
G L I I + G Y C A
Sbjct: 163 SGAVLKIFNIQLEDEGIYECEAE 185
Score = 47.2 bits (112), Expect = 2e-07
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPE--IKWRREDNQPISINKRKKVH-MHYGEQLNITK 73
V V+E + L C + +W + P+ I K+ L I
Sbjct: 14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLL-NEFPVFITMDKRRFVSQTNGNLYIAN 72
Query: 74 ISRTEMGAYLCIAT 87
+ ++ G Y C +
Sbjct: 73 VEASDKGNYSCFVS 86
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 64.9 bits (158), Expect = 2e-13
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P L P ++ + + L C+A G P P ++W + +P+ G
Sbjct: 311 AAPYWL---DEPKNLILAPGEDGRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPNREVAG 366
Query: 67 EQLNITKISRTEMGAYLCIAT 87
+ + + Y C +
Sbjct: 367 DTIIFRDTQISSRAVYQCNTS 387
Score = 63.3 bits (154), Expect = 8e-13
Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 56/178 (31%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
P+ + + T SS V ++ L C A G P P+I W + + +K K +
Sbjct: 216 AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK-KGGDLPSDKAK--FEN 272
Query: 65 YGEQLNITKISRTEMGAYLCIAT-----------------------------KIG----- 90
+ + L IT +S + G Y C+A+ G
Sbjct: 273 FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRL 332
Query: 91 --------PLKIFW-----------EIIFHMHYGEQLNITKISRTEMGAYLCIATNNV 129
+ W G+ + + Y C +N
Sbjct: 333 VCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEH 390
Score = 60.3 bits (146), Expect = 8e-12
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+ PP I T+ + V NI + C+A+G PAP W R +++ +I K +V M
Sbjct: 14 TQPPTI--TKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMRR 70
Query: 66 GE-----QLNITKISRTEMGAYLCIAT 87
G Y C A
Sbjct: 71 RSGTLVIDFRSGGRPEEYEGEYQCFAR 97
Score = 49.9 bits (119), Expect = 3e-08
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMH 64
S P + V V+E +TL C G P+P I W +PI+ +KR V
Sbjct: 113 SKSPLW--PKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR--VSQG 168
Query: 65 YGEQLNITKISRTEM-GAYLCIAT 87
+ L + + +M Y C A
Sbjct: 169 HNGDLYFSNVMLQDMQTDYSCNAR 192
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 65.0 bits (158), Expect = 2e-13
Identities = 40/195 (20%), Positives = 56/195 (28%), Gaps = 61/195 (31%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ PP I + ++ L C A G P PEI W D + I+ N R +V +
Sbjct: 426 RFDPPVI---RQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL-DGKKIANNDRYQVGQY 481
Query: 65 YGEQ------LNITKISRTEMGAYLCIAT-KIG--------------------------- 90
LNIT + + G Y CIA K+G
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAG 541
Query: 91 -------------PLKIFW-----EIIFHMHYGEQ----LNITKISRTE-MGAYLCIATN 127
I W + + L I + R Y C+A N
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKN 601
Query: 128 NVPPSVSKRITVDVE 142
S + V V
Sbjct: 602 QEGYSARGSLEVQVM 616
Score = 61.9 bits (150), Expect = 3e-12
Identities = 33/195 (16%), Positives = 50/195 (25%), Gaps = 67/195 (34%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P I A+ + +TC G+P I W R DN+ + IN++ +
Sbjct: 526 GLPYI----RQMEKKAIVAGETLIVTCPVAGYPIDSIVWER-DNRALPINRK--QKVFPN 578
Query: 67 EQLNITKISRTE-MGAYLCIA-TKIG---------------------------------- 90
L I + R Y C+A + G
Sbjct: 579 GTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLT 638
Query: 91 ----------PLKIFW-------------EIIFHMHYGEQLNITKISRTEMGAYLCIATN 127
PL I W G L I + + G + C A N
Sbjct: 639 LHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN 698
Query: 128 NVPPSVSKRITVDVE 142
++V
Sbjct: 699 LA-GHQQFTTPLNVY 712
Score = 58.4 bits (141), Expect = 4e-11
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
VPP + P+ A + + + CKA+GFP P++ W++ K K +
Sbjct: 713 VPPRWI---LEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR 769
Query: 67 EQ---LNITKISRTEMGAYLCIAT 87
+ L++ I +T G YLC A
Sbjct: 770 VEEGTLHVDNIQKTNEGYYLCEAI 793
Score = 55.3 bits (133), Expect = 5e-10
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P + + + + CKA G P PEI W R D + + +
Sbjct: 37 KGPVF--LKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG-DVPGLRQISSD 93
Query: 67 EQLNITKISRTEM------GAYLCIAT 87
+L + Y C+A
Sbjct: 94 GKLVFPPFRAEDYRQEVHAQVYACLAR 120
Score = 54.9 bits (132), Expect = 6e-10
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+VP + + + L C A+G+P P +W + + + + ++
Sbjct: 245 AVPKVVSLAK--FDMKTYSGSSTMALLCPAQGYPVPVFRWYK-FIEGTTRKQAVVLNDRV 301
Query: 66 GEQ---LNITKISRTEMGAYLCIAT 87
+ L I + G YLC+
Sbjct: 302 KQVSGTLIIKDAVVEDSGKYLCVVN 326
Score = 54.2 bits (130), Expect = 1e-09
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P + + P + V TC+ G P + W + D + I ++
Sbjct: 342 APLSA---KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES-------- 389
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I + + + G Y C
Sbjct: 390 -VLRIESVKKEDKGMYQCFVR 409
Score = 43.4 bits (102), Expect = 6e-06
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 9/88 (10%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAE---GFPAPEIKWRREDNQPI--SINKRKK 60
V E+ + V + + C + W ++ + K
Sbjct: 136 VVAQYY---EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 192
Query: 61 VHMHYGEQLNITKISRT-EMGAYLCIAT 87
+ +L+I ++ +Y C
Sbjct: 193 YLVLPSGELHIREVGPEDGYKSYQCRTK 220
Score = 26.1 bits (57), Expect = 5.5
Identities = 2/20 (10%), Positives = 7/20 (35%)
Query: 108 LNITKISRTEMGAYLCIATN 127
+N+ + + +A
Sbjct: 1 MNMPNERLKWLMLFAAVALI 20
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 61.2 bits (149), Expect = 2e-13
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV-HM 63
S P I+ P VR ++ L K G W + + I ++ KV +
Sbjct: 4 GSSGPQIIQF---PEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENS 59
Query: 64 HYGEQLNITKISRTEMGAYLCIAT 87
G +L I + G Y +
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVE 83
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 62.7 bits (152), Expect = 3e-13
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQ-PISINKRKKVHMHY 65
P + + +T+TC FP P ++W + P V
Sbjct: 103 KPLTLSVH---SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK 159
Query: 66 GEQLNI---TKISRTEMGAYLCIAT 87
L++ + + C+
Sbjct: 160 DGSLSVAVDLSLPKPWHLPVTCVGK 184
Score = 36.2 bits (83), Expect = 0.002
Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 28/125 (22%)
Query: 20 SVAVREEFNITLTC---KAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
+ + E +TLT + P E+ W G I R
Sbjct: 2 TAFLGER--VTLTSYWRRVSLGPEIEVSW-----------------FKLGPGEEQVLIGR 42
Query: 77 TEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKR 136
I + F I L +T + + G YLC V+K+
Sbjct: 43 MHHD---VIFIEWPFRGFFD--IHRSANTFFLVVTAANISHDGNYLCRMKLGE-TEVTKQ 96
Query: 137 ITVDV 141
+ V
Sbjct: 97 EHLSV 101
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 60.4 bits (147), Expect = 3e-13
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
S P I+ + V + KA G P P W + D + I+ + K+
Sbjct: 4 SSKPVIV---TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGGKYKLSEDK 59
Query: 66 GE-QLNITKISRTEMGAYLCIAT 87
G L I K ++ G Y C
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVK 82
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 64.0 bits (156), Expect = 3e-13
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
++ P+ ++ VR + N TL CK G P P +KW R+ + I+ + ++
Sbjct: 2 AMAPHFK---EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 66 GE--QLNITKISRTEMGAYLCIAT 87
G QL I ++ + Y AT
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRAT 82
Score = 52.8 bits (127), Expect = 2e-09
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM- 63
K P L+ +V +++ G P P I W++ I N +V +
Sbjct: 101 KIHLPKTLEG---MGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVT 156
Query: 64 -HYGEQLNITKISRTEMGAYLCIAT 87
+ + + R + G Y+ A
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAK 181
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 59.7 bits (145), Expect = 5e-13
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
I P+S + + L C A G P P +W + + P++ + +
Sbjct: 3 KLQIC---VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETK--------K 50
Query: 68 QLNITKISRTEMGAYLCIAT 87
+ + G Y C
Sbjct: 51 LYMVPYVDLEHQGTYWCHVY 70
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 63.4 bits (154), Expect = 6e-13
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
K+ + P V ++E + LTC G P PE+ W + + + ++ + +
Sbjct: 219 KNRARVL---GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDDHCNLKFE 274
Query: 65 YGEQ--LNITKISRTEMGAYLCIAT 87
G I +S + G Y +
Sbjct: 275 AGRTAYFTINGVSTADSGKYGLVVK 299
Score = 57.2 bits (138), Expect = 9e-11
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAPEIKWRREDNQPISINKRKKVHMHY 65
P+ + S V E N+ L CK I W + D + IS++++
Sbjct: 6 TGPHFV----EYLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFK-DG 59
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
L IT+ S+ + G Y I
Sbjct: 60 ICTLLITEFSKKDAGIYEVILK 81
Score = 44.9 bits (106), Expect = 2e-06
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
+ +T + E + ++ W + I + R K + +
Sbjct: 105 VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQ 163
Query: 68 -QLNITKISRTEMGAYLCIAT 87
L I + + + G Y+
Sbjct: 164 IWLQINEPTPNDKGKYVMELF 184
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 61.8 bits (150), Expect = 6e-13
Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 64/195 (32%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVHMHYG 66
+ P ++ TL C+ + PE+ W R D Q + + + + G
Sbjct: 2 ESPFV---GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQTQVPLG 57
Query: 67 EQ----------LNITKISRTEMGAYLCIAT-KIG------------------------- 90
E L IT + ++ G Y C+
Sbjct: 58 EDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRT 117
Query: 91 ------------------PLKIFWE-----IIFHMHYGEQLNITKISRTEMGAYLCIATN 127
P+ + W + +G Q ++ + ++ C A N
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHN 177
Query: 128 NVPPSVSKRITVDVE 142
+ S+ T+ V
Sbjct: 178 AKGVTTSRTATITVL 192
Score = 54.5 bits (131), Expect = 4e-10
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHY 65
P L P V L+C+A+G P P ++ W + D P++
Sbjct: 105 GLPYFL---EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATAPGH------ 154
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
G Q ++ + ++ C A
Sbjct: 155 GPQRSLHVPGLNKTSSFSCEAH 176
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 63.5 bits (154), Expect = 6e-13
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
++V V +ITL + W + ++ + + I K++ T
Sbjct: 55 AAAVEVDVSASITLQVLVDAPGNISCLWVF-KHSSLNCQPHFDLQNRGVVSMVILKMTET 113
Query: 78 EMGAYLCIAT 87
+ G YL
Sbjct: 114 QAGEYLLFIQ 123
Score = 57.8 bits (139), Expect = 7e-11
Identities = 18/185 (9%), Positives = 52/185 (28%), Gaps = 59/185 (31%)
Query: 15 ESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGE------ 67
++T + ++ + + CKA + W +N+ + ++ +
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRI 289
Query: 68 -QLNITKISRTEMGAYLCIAT-KIG----------------------------------- 90
++ ++R + G Y C ++
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR 349
Query: 91 -----PLKIFWEI--------IFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRI 137
++ W + G ++ + + G Y+ A N+ +K
Sbjct: 350 FKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD-AQFTKMF 408
Query: 138 TVDVE 142
T+++
Sbjct: 409 TLNIR 413
Score = 55.8 bits (134), Expect = 3e-10
Identities = 9/81 (11%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
I T S + + + + + +P W + ++ + G
Sbjct: 323 EKGFINATNS-SEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSFPCEQK---GLDNG 377
Query: 67 EQLNITKISRTEMGAYLCIAT 87
++ + + G Y+ A
Sbjct: 378 YSISKFCNHKHQPGEYIFHAE 398
Score = 47.7 bits (113), Expect = 2e-07
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
E L C +E P P ++W D+Q S + + E + ++ T
Sbjct: 147 RPYFRKMEN-QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE-KVLHELFGT 204
Query: 78 EMGAYLCIAT 87
+ C A
Sbjct: 205 D---IRCCAR 211
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 61.6 bits (150), Expect = 7e-13
Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 3/83 (3%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM-HY 65
P + L G P P + W + + ++ + +
Sbjct: 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLLQNSENITIENTEH 157
Query: 66 GEQLNITKISRTE-MGAYLCIAT 87
L + + R G Y +
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLS 180
Score = 61.6 bits (150), Expect = 7e-13
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV-HMHYG 66
P I V + L+C+ G P P+IKW R + + +++ K+
Sbjct: 7 APGIR---KEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQSRKYKMSSDGRT 62
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L + + + G Y CIAT
Sbjct: 63 HTLTVMTEEQEDEGVYTCIAT 83
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 63.6 bits (154), Expect = 8e-13
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P + S V + + K G+P PEIKW + + P+ N + G
Sbjct: 326 EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHT----IKAG 380
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I ++S + G Y I T
Sbjct: 381 HVLTIMEVSERDTGNYTVILT 401
Score = 61.3 bits (148), Expect = 4e-12
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM 63
+ V P I + +I ++C A G P P+I W + DN+ + + +
Sbjct: 662 LERVAPTIT---GNLENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKD 717
Query: 64 HYGEQLNITKISRTEMGAYLCIAT 87
L I ++ + + G Y C A
Sbjct: 718 GNR-NLTIRRVRKEDEGLYTCQAC 740
Score = 59.0 bits (142), Expect = 2e-11
Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 8/137 (5%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE-IKWRREDNQPISINKRKKVHMHY 65
VPP I + + + TLTC P P I W + + + + V +
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478
Query: 66 GEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIA 125
+ G K + + + Y C A
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKN------QFALIEGKNKTVSTLVIQAANVSALYKCEA 532
Query: 126 TNNVPPSVSKRITVDVE 142
N V + I+ V
Sbjct: 533 VNKV-GRGERVISFHVT 548
Score = 56.7 bits (136), Expect = 2e-10
Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 26/139 (18%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P I + + E+ +++L C A+ + W + QP+ I+ +
Sbjct: 549 RGPEI----TLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCK 604
Query: 67 EQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIAT 126
+ K++ T + + + S + G Y+C+A
Sbjct: 605 NLDTLWKLNAT-------------------MFSNSTNDILIMELKNASLQDQGDYVCLAQ 645
Query: 127 N---NVPPSVSKRITVDVE 142
+ V +++TV
Sbjct: 646 DRKTKKRHCVVRQLTVLER 664
Score = 45.5 bits (107), Expect = 1e-06
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 7 VPPNILDTESTPSS-VAVREEFNITLTCKAEGFPAPEIKW-----RREDNQPISINKRKK 60
V I D +PS + + + L C A I + + +N+ K
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 61 VHMHYGEQ-----LNITKISRTEMGAYLCIAT 87
+ L I ++R++ G Y C A+
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310
Score = 43.6 bits (102), Expect = 6e-06
Identities = 8/84 (9%), Positives = 21/84 (25%), Gaps = 1/84 (1%)
Query: 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM 63
Y+S + + + + + + C R + + ++
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD-GNRISW 179
Query: 64 HYGEQLNITKISRTEMGAYLCIAT 87
+ I + G C A
Sbjct: 180 DSKKGFTIPSYMISYAGMVFCEAK 203
Score = 42.4 bits (99), Expect = 2e-05
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
+ P + + ++ + +TC+ + ++ W N +R +V
Sbjct: 25 PSVSLDLPRLS---IQKDILTIKANTTLQITCRGQ----RDLDWLW-PNNQSGSEQRVEV 76
Query: 62 HMH----YGEQLNITKISRTEMGAYLCIAT 87
+ + L I K+ + GAY C
Sbjct: 77 TECSDGLFCKTLTIPKVIGNDTGAYKCFYR 106
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 63.0 bits (153), Expect = 8e-13
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHY 65
P + + P+ V RE L C EG + W++ D + + +
Sbjct: 5 KYPVL---KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAALRKD 60
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
L + ++ G Y C A
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAE 82
Score = 59.5 bits (144), Expect = 2e-11
Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH- 64
P + + + C P + + + + ++ N ++ H
Sbjct: 210 KGEPVPQ---YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NGKDVNGNPEDRITRHN 265
Query: 65 --YGEQLNITKISRTEMGAYLCIAT 87
G++L + G Y C
Sbjct: 266 RTSGKRLLFKTTLPEDEGVYTCEVD 290
Score = 58.0 bits (140), Expect = 5e-11
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P + + V++ ++T+ CK G PAP + W + +P+S R V
Sbjct: 307 SAPKY--EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLS-GGRATVT---D 359
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I + + G Y C AT
Sbjct: 360 SGLVIKGVKNGDKGYYGCRAT 380
Score = 46.1 bits (109), Expect = 7e-07
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCK-AEGFPAPEIKWRREDNQPIS----INKRK 59
K+ + E L C +P P I W++ + + +
Sbjct: 97 KTYLIAS---PAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153
Query: 60 KVHMHYGEQLNITKISRTEM---GAYLCIAT 87
++ L T +++ ++ Y+C A
Sbjct: 154 RITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 62.5 bits (152), Expect = 1e-12
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
P I P +V + + L C A G P P I WRR D +PI+ R+
Sbjct: 198 GVMGEYEPKIEVQ--FPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK 255
Query: 62 HMHYGEQLNITKISRTEMGAYLCIAT 87
L I + + G+Y C+A
Sbjct: 256 ---SNGILEIPNFQQEDAGSYECVAE 278
Score = 61.4 bits (149), Expect = 4e-12
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PN + + + V E ++ CKA G P P +W + + P+ R ++
Sbjct: 294 AQPNWV---QIINDIHVAMEESVFWECKANGRPKPTYRWLK-NGDPLLTRDRIQIE---Q 346
Query: 67 EQLNITKISRTEMGAYLCIAT 87
LNIT ++ ++ G Y C+A
Sbjct: 347 GTLNITIVNLSDAGMYQCVAE 367
Score = 57.9 bits (140), Expect = 5e-11
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 8 PPNILDTESTPSSVAV---REEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
P + PS V EE + L+C+ +G P P I+W+ + + I + +
Sbjct: 5 GPVFV---QEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYSVV 60
Query: 65 YGEQLNITKISRTE-MGAYLCIAT 87
G L I ++T+ G Y CIAT
Sbjct: 61 DGS-LLINNPNKTQDAGTYQCIAT 83
Score = 48.7 bits (116), Expect = 9e-08
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 17 TPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKIS 75
T S+V+VR + L C W + N+R L I K+
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRR--FVSQETGNLYIAKVE 165
Query: 76 RTEMGAYLCIAT 87
++++G Y C+ T
Sbjct: 166 KSDVGNYTCVVT 177
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 59.3 bits (144), Expect = 1e-12
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S+ S P + E +T TC+ G P P+I W + D + IS
Sbjct: 2 SSGSSGAPFFE---MKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYT 57
Query: 62 HMHYGE---QLNITKISRTEMGAYLCIAT 87
+ L+ T + + G Y +A
Sbjct: 58 IQRDLDGTCSLHTTASTLDDDGNYTIMAA 86
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 58.9 bits (143), Expect = 1e-12
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
+ P IL + + ++ F L G P P W + ++ V
Sbjct: 1 LKPKIL---TASRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPELLVDAKSS 56
Query: 67 E-QLNITKISRTEMGAYLCIAT 87
+ R + G Y
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVK 78
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 61.6 bits (149), Expect = 1e-12
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNIT--- 72
+ V LTC+AEG+P E+ W D+Q +S + N+T
Sbjct: 121 NQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTL 180
Query: 73 KISRTEMGAYLCIAT 87
+I+ T + C
Sbjct: 181 RINTTTNEIFYCTFR 195
Score = 29.6 bits (66), Expect = 0.29
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 25/134 (18%)
Query: 28 NITLTCKAEGFPAPE-----IKWRREDNQPISINKRKKVHMHYGEQ-------------- 68
N+T+ CK + + W ED I ++
Sbjct: 18 NMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSL 77
Query: 69 ----LNITKISRTEMGAYLCIATKIGPL--KIFWEIIFHMHYGEQLNITKISRTEMGAYL 122
L IT + + G Y C+ + G +I ++ + Q + T
Sbjct: 78 GNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELT 137
Query: 123 CIATNNVPPSVSKR 136
C A V
Sbjct: 138 CQAEGYPKAEVIWT 151
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 62.2 bits (151), Expect = 2e-12
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P+ L + ++ +C A G P P ++W R D QP++ R +V G
Sbjct: 293 AQPDWL---DVITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLASQNRIEVS---G 345
Query: 67 EQLNITKISRTEMGAYLCIAT 87
+L +K+ + G Y C+A
Sbjct: 346 GELRFSKLVLEDSGMYQCVAE 366
Score = 61.4 bits (149), Expect = 3e-12
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 5 KSVPPNILDTESTPSSVAVRE---EFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
+S P E P+ E E +TLTC+A P +W+ + + + +
Sbjct: 1 RSYGPVF---EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSRY 56
Query: 62 HMHYGEQLNITKISRTEMGAYLCIAT 87
+ G+ + + + G+Y C+AT
Sbjct: 57 RLVAGDLVISNPVKAKDAGSYQCVAT 82
Score = 58.3 bits (141), Expect = 4e-11
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ P+I P+ +TL C A G P P+IKWR+ D S +
Sbjct: 203 RQYAPSIK--AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS------KWLS 254
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
L+I + + G Y C A
Sbjct: 255 SEPLLHIQNVDFEDEGTYECEAE 277
Score = 48.7 bits (116), Expect = 8e-08
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 14 TESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNIT 72
+ V + E + + TC +PA +W + ++ L I
Sbjct: 104 SAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIA 163
Query: 73 KISRTEMGAYLCIAT 87
K +++G Y C AT
Sbjct: 164 KTEASDLGNYSCFAT 178
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 58.9 bits (143), Expect = 2e-12
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PP I + + + L +G P P++ W + P+ ++ +
Sbjct: 20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPLDTSRVHVRTSDFD 78
Query: 67 EQLNITKISRTEMGAYLCIAT 87
+ + +R++ G Y
Sbjct: 79 TVFFVRQAARSDSGEYELSVQ 99
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance,
cell adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 60.6 bits (147), Expect = 2e-12
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
P I+ P+ + V++ TL CK EG P P I+W + D +P+S N++K + + +
Sbjct: 9 SPRII---EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKD 64
Query: 68 -----QLNITKISRTEMGAYLCIAT 87
+ + G Y C+A
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAK 89
Score = 52.2 bits (125), Expect = 3e-09
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTC-KAEGFPAPEIKWRREDNQPISINKR----- 58
+ + P V + L C +G P P + W + D P+ K
Sbjct: 105 AVLRDDFR---VEPKDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPLDDLKAMSFGA 160
Query: 59 -KKVHMHYGEQLNITKISRTEMGAYLCIAT 87
+V + G L I+ + + G Y CIA
Sbjct: 161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQ 190
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 60.7 bits (147), Expect = 3e-12
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
K+ + P V ++E + LTC G P PE+ W + + + ++ +
Sbjct: 114 KNRARVL---GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQTDHCNLKFE 169
Query: 65 YGE--QLNITKISRTEMGAYLCIAT 87
G I +S + G Y +
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVVK 194
Score = 37.2 bits (86), Expect = 7e-04
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 20 SVAVREEFNITLTCKAEGF----------PAPEIKWRREDNQPISINKRKKVHMHYGE-Q 68
S ++ + AEG ++ W + I + R K + +
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIW 60
Query: 69 LNITKISRTEMGAYLCIAT 87
L I + + + G Y+
Sbjct: 61 LQINEPTPNDKGKYVMELF 79
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 60.2 bits (146), Expect = 3e-12
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 35/137 (25%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ PP I+ PS + V + TL CKAEG P P I+W + + + +K H
Sbjct: 6 EDFPPRIV---EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKD-DPRSH 60
Query: 65 YGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCI 124
+ G L ++ + SR + G Y+C+
Sbjct: 61 RMLLPS-------------------GSLFFL-----------RIVHGRKSRPDEGVYVCV 90
Query: 125 ATNNVPPSVSKRITVDV 141
A N + +VS +++V
Sbjct: 91 ARNYLGEAVSHDASLEV 107
Score = 55.2 bits (133), Expect = 2e-10
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ + PS V V + C+ G P P I W++ D P+
Sbjct: 109 ILRDDF---RQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDE--RITI 162
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
G +L IT +++ G Y+C+ T
Sbjct: 163 RGGKLMITYTRKSDAGKYVCVGT 185
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 61.5 bits (149), Expect = 3e-12
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 54/160 (33%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
+S V +E + LTC+ E + W +NQ + ++ R ++ + L + ++R
Sbjct: 296 NNSNPVEDEDAVALTCEPEIQNTTYLWWV--NNQSLPVSPRLQLS-NDNRTLTLLSVTRN 352
Query: 78 EMGAYLCIAT-KIG-------------------------------------------PLK 93
++G Y C ++ P +
Sbjct: 353 DVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQ 412
Query: 94 IFW----EIIFHMHYGEQLNITKISRTEMGAYLCIATNNV 129
W I H ++L I+ I+ G Y C A N+
Sbjct: 413 YSWLIDGNIQQH---TQELFISNITEKNSGLYTCQANNSA 449
Score = 60.0 bits (145), Expect = 1e-11
Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 66/180 (36%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
+PS R N++L+C A P + W D + ++L I+ I+
Sbjct: 387 SPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQ----------HTQELFISNITE 435
Query: 77 TEMGAYLCIAT-KIG--------------------------------------------P 91
G Y C A
Sbjct: 436 KNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQN 495
Query: 92 LKIFW----------EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141
W + + L + ++R + AY+C N+V + S +T+DV
Sbjct: 496 TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
Score = 58.4 bits (141), Expect = 4e-11
Identities = 25/180 (13%), Positives = 48/180 (26%), Gaps = 66/180 (36%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
+P + + R N+ L+C A P + W + + L I I+
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQQSTQE----------LFIPNITV 257
Query: 77 TEMGAYLCIAT---------------------------------------------KIGP 91
G+Y C A +I
Sbjct: 258 NNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN 317
Query: 92 LKIFWEI----------IFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141
W + + + L + ++R ++G Y C N + S + ++V
Sbjct: 318 TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377
Score = 57.7 bits (139), Expect = 9e-11
Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 54/190 (28%)
Query: 1 MSAYKSV---PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINK 57
+ K++ + S+ +S V ++ + TC+ E + W + Q + ++
Sbjct: 454 RTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSP 511
Query: 58 RKKVHMHYGEQLNITKISRTEMGAYLCIAT-KIG-------------------------- 90
R ++ + L + ++R + AY+C +
Sbjct: 512 RLQLS-NGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSS 570
Query: 91 -----------------PLKIFWEI--IFHMHYGEQLNITKISRTEMGAYLCIATNNVPP 131
+ W I I + + L I KI+ G Y C +N
Sbjct: 571 YLSGANLNLSCHSASNPSPQYSWRINGIPQ-QHTQVLFIAKITPNNNGTYACFVSNLA-T 628
Query: 132 SVSKRITVDV 141
+ I +
Sbjct: 629 GRNNSIVKSI 638
Score = 54.6 bits (131), Expect = 8e-10
Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 49/174 (28%)
Query: 14 TESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITK 73
+ S+ +S V ++ + TC+ E W +NQ + ++ R ++ L +
Sbjct: 114 SISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWV-NNQSLPVSPRLQLSNGNRT-LTLFN 170
Query: 74 ISRTEMGAYLCIAT-------------------------------KIG------------ 90
++R + +Y C + G
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN 230
Query: 91 -PLKIFWEII-FHMHYGEQLNITKISRTEMGAYLCIATNNV-PPSVSKRITVDV 141
P + W + ++L I I+ G+Y C A N+ + + T+ V
Sbjct: 231 PPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITV 284
Score = 43.8 bits (103), Expect = 5e-06
Identities = 12/125 (9%), Positives = 26/125 (20%), Gaps = 23/125 (18%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
+ V E + L W + + ++
Sbjct: 5 ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGE-----------------------RVDG 41
Query: 77 TEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKR 136
I T+ + ++ L I I + + G Y + +
Sbjct: 42 NRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEAT 101
Query: 137 ITVDV 141
V
Sbjct: 102 GQFRV 106
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 60.3 bits (146), Expect = 4e-12
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 5 KSVPPNILDTEST-PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM 63
P +TE AV + C A G P P ++W + + + R +
Sbjct: 12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYK 70
Query: 64 HYGEQ--LNITKISRTEMGAYLCIAT 87
+ L + + ++ G Y C+
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVE 96
Score = 55.3 bits (133), Expect = 2e-10
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPIS---------- 54
+ P P++ + ++ CK P I+W + + S
Sbjct: 115 RHRPILQ---AGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYL 171
Query: 55 -INKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
+ K ++ E L + ++ + G Y+C +
Sbjct: 172 KVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding,
immunoglobulin domain, kinase, membrane, nucleotid
binding; HET: NAG; 2.10A {Homo sapiens}
Length = 241
Score = 60.3 bits (146), Expect = 5e-12
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 6 SVPPNILDTES-TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKK--VH 62
+ P E +AV + C A G P P I W + + + R
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKL 67
Query: 63 MHYGEQLNITKISRTEMGAYLCIAT 87
H L + + ++ G Y C+
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVE 92
Score = 51.5 bits (123), Expect = 7e-09
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 15/94 (15%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRE---DNQPISINKRKKV- 61
P P++ ++ CK P I+W + + + + V
Sbjct: 112 HRPILQA---GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVT 168
Query: 62 --------HMHYGEQLNITKISRTEMGAYLCIAT 87
+ +L + +S + G YLC AT
Sbjct: 169 VLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 60.6 bits (147), Expect = 5e-12
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH-- 64
PP + P + C+A G P P + W + + ++ + + +
Sbjct: 5 EPPRFI---KEPKDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIEFDES 60
Query: 65 YGEQLNITKISRTE-MGAYLCIAT 87
G L I + Y C+A
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQ 84
Score = 60.2 bits (146), Expect = 8e-12
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
++V P P S + N+ +TC A G P P +KW + + ++ V
Sbjct: 202 QNVAPRFS---ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTPEDDMPVG-- 255
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
+ + + Y C+A
Sbjct: 256 ---RNVLELTDVKDSANYTCVAM 275
Score = 59.5 bits (144), Expect = 1e-11
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKR-KKVHM 63
S PNI P V T+ C A G P PEI W + D P+ + ++
Sbjct: 105 PSGFPNID---MGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDPSASNGRIKQ 160
Query: 64 HYGEQLNITKISRTEMGAYLCIAT 87
L I T+ G Y C+AT
Sbjct: 161 LRSGALQIESSEETDQGKYECVAT 184
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 57.3 bits (139), Expect = 6e-12
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
V P+ S AV E + L C G P P I W + QPI + G
Sbjct: 10 VAPSFS---SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPIQYARS---TCEAG 62
Query: 67 EQ-LNITKISRTEMGAYLCIAT 87
L+I + G Y C+A
Sbjct: 63 VAELHIQDALPEDHGTYTCLAE 84
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 60.9 bits (147), Expect = 7e-12
Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
I T ++ + + + + + +P W + ++ + G
Sbjct: 323 EKGFINAT-NSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSFPCEQK---GLDNG 377
Query: 67 EQLNITKISRTEMGAYLCIAT 87
++ + + G Y+ A
Sbjct: 378 YSISKFCNHKHQPGEYIFHAE 398
Score = 60.5 bits (146), Expect = 7e-12
Identities = 18/184 (9%), Positives = 41/184 (22%), Gaps = 54/184 (29%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
+ + ++V V +ITL + W + ++ +
Sbjct: 48 SSGTVYE----AAAVEVDVSASITLQVLVDAPGNISCLWVF-KHSSLNCQPHFDLQNRGV 102
Query: 67 EQLNITKISRTEMGAYLCIAT-KIG----------------------------------- 90
+ I K++ T+ G YL +
Sbjct: 103 VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCI 162
Query: 91 -----PLKIFWE--------IIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRI 137
+ W + + C A N + ++
Sbjct: 163 SESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLF 222
Query: 138 TVDV 141
T+D+
Sbjct: 223 TIDL 226
Score = 53.5 bits (128), Expect = 2e-09
Identities = 18/182 (9%), Positives = 51/182 (28%), Gaps = 59/182 (32%)
Query: 17 TPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ------- 68
T + ++ + + CKA + W +N+ + ++ + +
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRILF 291
Query: 69 LNITKISRTEMGAYLCIAT-KIG------------------------------------- 90
++ ++R + G Y C ++
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK 351
Query: 91 ---PLKIFWEI--------IFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITV 139
++ W + G ++ + + G Y+ A N+ +K T+
Sbjct: 352 AYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD-AQFTKMFTL 410
Query: 140 DV 141
++
Sbjct: 411 NI 412
Score = 45.8 bits (108), Expect = 1e-06
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 26/94 (27%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRR-------------EDNQPI 53
P +L S +C ++G+P P W++ E
Sbjct: 414 RKPQVLAEASA-----------SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNR 462
Query: 54 SINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
N++ LN+++ + C A
Sbjct: 463 KANRKVFGQWVSSSTLNMSEAIKG--FLVKCCAY 494
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 56.9 bits (138), Expect = 8e-12
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
P I S V + + + G P PE +W + + I + R +
Sbjct: 5 APKIF---ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSDRIYWYWPEDN 60
Query: 68 --QLNITKISRTEMGAYLCIAT 87
+L I ++ + + + A
Sbjct: 61 VCELVIRDVTGEDSASIMVKAI 82
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 59.1 bits (143), Expect = 9e-12
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
P + P +V E + +TC+ +P+ I W R D Q + + + ++
Sbjct: 16 HMYAPKL----QGPVAVYTWEGNQVNITCEVFAYPSATISWFR-DGQLLPSSNYSNIKIY 70
Query: 65 YGE---QLNITKISRTEMGAYLCIAT 87
L +T S + G Y C A
Sbjct: 71 NTPSASYLEVTPDSENDFGNYNCTAV 96
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 59.7 bits (144), Expect = 9e-12
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P + D P + E T C+A G P PE+K ++ P+ I + V
Sbjct: 182 YGPRL-DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV----- 235
Query: 67 EQLNITKISRTEMGAYLCIAT 87
+R G YLC A
Sbjct: 236 --------TRDLEGTYLCRAR 248
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 57.7 bits (139), Expect = 1e-11
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 16/95 (16%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKK----- 60
S + P S ++ L C+A G P PEI+W E P I +
Sbjct: 19 SHMAGFV---QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 61 --------VHMHYGEQLNITKISRTEMGAYLCIAT 87
H H ++I + + G Y C A+
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRAS 110
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 59.8 bits (144), Expect = 1e-11
Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 4/121 (3%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
+ + +V ++ L C+ EG + W + + + + +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-SGGLPSLGLTLANVT 220
Query: 75 SRTEMGAYLCIAT-KIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSV 133
S C A +G ++ ++ QL PS+
Sbjct: 221 SDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQL--HTAVEMHHWCIPFSVDGQPAPSL 278
Query: 134 S 134
Sbjct: 279 R 279
Score = 47.4 bits (112), Expect = 2e-07
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ-------LNITK 73
E + + +G PAP ++W + + + L + +
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 315
Query: 74 ISRTEMGAYLCIAT 87
+ G Y +A
Sbjct: 316 PTHVNNGNYTLLAA 329
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 56.3 bits (136), Expect = 1e-11
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 8 PPNILDTE-STPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVH--MH 64
P +TE AV + C A G P P ++W + + + R + +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRN 62
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
L + + ++ G Y C+
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVE 85
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 58.8 bits (142), Expect = 2e-11
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 5/82 (6%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHY 65
P V V E+ + L C + R +P+ + +
Sbjct: 87 DPARP--WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH 144
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
G I + + Y C A
Sbjct: 145 G--FTIHRAKFIQSQDYQCSAL 164
Score = 55.0 bits (132), Expect = 5e-10
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVH--- 62
PP + P+ + + C A + + +N ++I ++ H
Sbjct: 184 PGPPAL---TLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNR 240
Query: 63 MHYGEQLNITKISRTEMGAYLCIAT 87
LN+ ++ G Y C+A+
Sbjct: 241 YQKVLTLNLDQVDFQHAGNYSCVAS 265
Score = 45.7 bits (108), Expect = 9e-07
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P I E + + V+ +TL C G ++W + ++
Sbjct: 3 SIPVI---EPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSS---- 51
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L+ + G Y C
Sbjct: 52 -ILSTNNATFQNTGTYRCTEP 71
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 56.8 bits (137), Expect = 3e-11
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
V P T + V E CK EG+P PE+ W + D+ P+ ++ +
Sbjct: 38 PHVKPYFT---KTILDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESRH--FQID 91
Query: 65 YGEQ----LNITKISRTEMGAYLCIAT 87
Y E+ L I+++ + Y C A
Sbjct: 92 YDEEGNCSLTISEVCGDDDAKYTCKAV 118
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 57.1 bits (138), Expect = 3e-11
Identities = 26/169 (15%), Positives = 49/169 (28%), Gaps = 55/169 (32%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPE-IKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
P + V +E ++TLTC+ P + I+W + I + + K +
Sbjct: 11 PPWINVLQEDSVTLTCQGARSPESDSIQWFH-NGNLIPTHTQ---------PSYRFKANN 60
Query: 77 TEMGAYLCIAT--------------------------KIG--------------PLKIFW 96
+ G Y C + G +K+ +
Sbjct: 61 NDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTF 120
Query: 97 ----EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141
+ H +I + + + G Y C SK +T+ V
Sbjct: 121 FQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 58.7 bits (142), Expect = 3e-11
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P S + E I ++C + P I WRR D + + +
Sbjct: 99 YAPKF---ISNQTIYYSWEGNPINISCDVKSNPPASIHWRR-DKLVLPAKNTTNLKTYST 154
Query: 67 E---QLNITKISRTEMGAYLCIAT 87
L I S + G Y C AT
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTAT 178
Score = 57.1 bits (138), Expect = 1e-10
Identities = 39/196 (19%), Positives = 62/196 (31%), Gaps = 68/196 (34%)
Query: 9 PNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDN------QPISINKRKKVH 62
P+I+ + E +TL C AEG P PEI W+R + S++ R +V
Sbjct: 2 PHII----QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 63 MHYGE-QLNITKISRTEMGAYLCIAT-KIG------------------------------ 90
+G L+I + ++ G Y C A +IG
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNP 117
Query: 91 -----------PLKIFW--------------EIIFHMHYGEQLNITKISRTEMGAYLCIA 125
P I W + L I S + G Y C A
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177
Query: 126 TNNVPPSVSKRITVDV 141
TN++ + + + +
Sbjct: 178 TNHI-GTRFQEYILAL 192
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 58.5 bits (141), Expect = 3e-11
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKK--VHM 63
P +AV + C A G P P I W + + + R
Sbjct: 118 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLR 176
Query: 64 HYGEQLNITKISRTEMGAYLCIAT 87
H L + + ++ G Y C+
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVE 200
Score = 55.0 bits (132), Expect = 6e-10
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVHM 63
+ P + + + L+C G P W + D + ++R +
Sbjct: 4 AAEVPGPEPGQ--QEQLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGLVPSER---VL 57
Query: 64 HYGEQLNITKISRTEMGAYLCIAT 87
++L + S + GAY C
Sbjct: 58 VGPQRLQVLNASHEDSGAYSCRQR 81
Score = 53.9 bits (129), Expect = 1e-09
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRRE---DNQPISINKRKKVH 62
P + P++ ++ CK P I+W + + + + V
Sbjct: 217 RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVT 276
Query: 63 MH----------YGEQLNITKISRTEMGAYLCIAT 87
+ E L++ ++ + G Y C+A
Sbjct: 277 VLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 55.0 bits (133), Expect = 5e-11
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
P I S V N + P E+KW + + + +
Sbjct: 6 DHAPRIT---LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVELQESSKIHYTNTS 61
Query: 66 GE-QLNITKISRTEMGAYLCIAT 87
G L I + G Y + T
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCT 84
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 57.6 bits (139), Expect = 6e-11
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P + + + + CKA G P PEI W R D + + G
Sbjct: 2 KGPVF--LKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 67 EQLNITKISRTEM------GAYLCIAT 87
+ L + Y C+A
Sbjct: 60 K-LVFPPFRAEDYRQEVHAQVYACLAR 85
Score = 55.3 bits (133), Expect = 4e-10
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P + P + V TC+ G P + W + D + I ++
Sbjct: 306 APLSAK---IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES-------- 353
Query: 67 EQLNITKISRTEMGAYLCIAT 87
L I + + + G Y C
Sbjct: 354 -VLRIESVKKEDKGMYQCFVR 373
Score = 54.2 bits (130), Expect = 1e-09
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH---YGEQLNITK 73
+ + I+L C A+GFPAP +W + + + + ++ L I
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKD 276
Query: 74 ISRTEMGAYLCIAT 87
+ G YLC+
Sbjct: 277 AVVEDSGKYLCVVN 290
Score = 39.2 bits (91), Expect = 2e-04
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGF---PAPEIKWRRED--NQPISINKRKK 60
V E+ + V + + C F + W ++ N K
Sbjct: 101 VVAQYY---EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 157
Query: 61 VHMHYGEQLNITKISRT-EMGAYLCIAT 87
+ +L+I ++ +Y C
Sbjct: 158 YLVLPSGELHIREVGPEDGYKSYQCRTK 185
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 57.8 bits (139), Expect = 6e-11
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE-IKWRREDNQPISIN------KRK 59
I ++V V + N+ L + E FP PE +W N+ +
Sbjct: 309 DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY-MNRTFTDKWEDYPKSEN 367
Query: 60 KVHMHYGEQLNITKISRTEMGAYLCIAT 87
+ ++ Y +L++T++ TE G Y + +
Sbjct: 368 ESNIRYVSELHLTRLKGTEGGTYTFLVS 395
Score = 53.1 bits (127), Expect = 3e-09
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKV--- 61
P + + +S +RE T+TC + + W+R +N + ++
Sbjct: 209 KAVPVVS---VSKASYLLREGEEFTVTCTIKDVSSSVYSTWKR-ENSQTKLQEKYNSWHH 264
Query: 62 ---HMHYGEQLNITKISRTEMGAYLCIAT 87
+ L I+ + G ++C A
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYAN 293
Score = 48.1 bits (114), Expect = 2e-07
Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 12/82 (14%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRRED------------NQPISINKRKKVHMHY 65
P + N L C A GFP P I W ++N
Sbjct: 413 PEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL 472
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
Q +I + G C A
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAY 494
Score = 45.4 bits (107), Expect = 1e-06
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM 63
+ P + S+ +E+ + + C + +P+ + R
Sbjct: 110 FVRDPAKLF---LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR--FIP 164
Query: 64 HYGEQLNITKISRTE-MGAYLCIATKIG 90
+ I + R C + G
Sbjct: 165 DPKAGIMIKSVKRAYHRLCLHCSVDQEG 192
Score = 42.7 bits (100), Expect = 1e-05
Identities = 29/185 (15%), Positives = 43/185 (23%), Gaps = 65/185 (35%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PP+I S + VR I L C G +KW E + NK+
Sbjct: 35 SPPSI---HPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQN------- 80
Query: 67 EQLNITKISRTEMGAYLCIATK----------IGPLKIFWE------------------- 97
+ K T G Y C P K+F
Sbjct: 81 -EWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLT 139
Query: 98 --------------------IIFHMHYGEQLNITKISRTE-MGAYLCIATNNVPPSVSKR 136
+ F + I + R C +S++
Sbjct: 140 DPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEK 199
Query: 137 ITVDV 141
+ V
Sbjct: 200 FILKV 204
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 54.7 bits (132), Expect = 6e-11
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
P I ES + + + +G P P ++W + ++ +K +H
Sbjct: 2 HFAPTITFLES------PTSDHHWCIPFTVKGNPKPALQWFY-NGAILNESKYICTKIHV 54
Query: 66 GEQ------LNITKISRTEMGAYLCIAT 87
L + + G Y IA
Sbjct: 55 TNHTEYHGCLQLDNPTHMNNGDYTLIAK 82
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 56.8 bits (136), Expect = 8e-11
Identities = 22/137 (16%), Positives = 31/137 (22%), Gaps = 19/137 (13%)
Query: 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM 63
P+ ST V V E +IT+TC + W + +
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188
Query: 64 HYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLC 123
Q IT S G L I T+ G C
Sbjct: 189 ANKNQFGITWFSSEIAG------------------RASFSGARNLVIRAAKITDAGRVWC 230
Query: 124 IATNNV-PPSVSKRITV 139
+ T+
Sbjct: 231 ELATGQGELDADRSSTI 247
Score = 47.6 bits (112), Expect = 2e-07
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 17/128 (13%)
Query: 10 NILDTESTPSSVAVREEFNITLTCK---AEGFPAPEIKWRRED--NQPISINKRKKVHMH 64
+I+ +T + V V + L C A P I W + ++ + K
Sbjct: 1 SIMTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQG 60
Query: 65 YGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCI 124
G + + G +L A+ L +T + + G Y C
Sbjct: 61 EGLGFVESDSYKESFGDFLGRAS------------VANLAAPTLRLTHVHPQDGGRYWCQ 108
Query: 125 ATNNVPPS 132
+
Sbjct: 109 VAQWSIRT 116
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 56.2 bits (135), Expect = 1e-10
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
+ V + ++ V+E ++TLTC + I+W ++Q + + +R +
Sbjct: 101 TVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND-IGANIQWLF-NSQSLQLTERMTL 158
Query: 62 HMHYGEQLNITKISRTEMGAYLCIAT 87
L I I R + G Y C +
Sbjct: 159 -SQNNSILRIDPIKREDAGEYQCEIS 183
Score = 56.2 bits (135), Expect = 1e-10
Identities = 29/196 (14%), Positives = 43/196 (21%), Gaps = 71/196 (36%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQ---------PISINKRKKVHMHY 65
E+ P VA N+ L W + + + N +
Sbjct: 5 EAVPPQVAEDN--NVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYS 62
Query: 66 GEQ-------LNITKISRTEMGAYLCIATKIG---------------------------- 90
G + L I+ +MG Y T
Sbjct: 63 GREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTV 122
Query: 91 ---------------PLKIFWEI----------IFHMHYGEQLNITKISRTEMGAYLCIA 125
I W + L I I R + G Y C
Sbjct: 123 KELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEI 182
Query: 126 TNNVPPSVSKRITVDV 141
+N V S I +D+
Sbjct: 183 SNPVSVRRSNSIKLDI 198
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 56.7 bits (136), Expect = 1e-10
Identities = 8/72 (11%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
+ +E+ + + C + D + + + + G + I + R
Sbjct: 97 VGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG--ITIKNVKR 154
Query: 77 TE-MGAYLCIAT 87
C A
Sbjct: 155 AYHRLCVRCAAQ 166
Score = 48.6 bits (115), Expect = 8e-08
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVH 62
+ I +S +++ T+ C + W + + QP I + K
Sbjct: 181 VREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNS 240
Query: 63 MHYGEQ-------LNITKISRTEMGAYLCIAT 87
H G+ L I+ + G ++C A
Sbjct: 241 WHRGDFNYERQETLTISSARVDDSGVFMCYAN 272
Score = 42.8 bits (100), Expect = 1e-05
Identities = 27/190 (14%), Positives = 45/190 (23%), Gaps = 64/190 (33%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S + PP+I S + V ++LTC ++W + + +
Sbjct: 6 SPGEPSPPSI---HPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENK--- 55
Query: 62 HMHYGEQLNITKISRTEMGAYLCIATK----------IGPLKIFWE-------------- 97
+ K T G Y C + P K+F
Sbjct: 56 ----KNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALV 111
Query: 98 -----------IIFHMHYGEQLN--------------ITKISRTE-MGAYLCIATNNVPP 131
G+ L I + R C A +
Sbjct: 112 RCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTW 171
Query: 132 SVSKRITVDV 141
S + T+ V
Sbjct: 172 LHSDKFTLKV 181
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 53.9 bits (130), Expect = 2e-10
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ +I+ V V+E + T C+ + W D P+ N+ ++
Sbjct: 10 QGRRVHII---EDLEDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEIDAQ 65
Query: 65 YGE--QLNITKISRTEMGAYLCIA 86
G L + +++ + G A
Sbjct: 66 PGGYHVLTLRQLALKDSGTIYFEA 89
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 56.2 bits (135), Expect = 2e-10
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKW---RREDNQPISINKRKKVHM 63
+ + ++ VR+ NITL C G +W R+E + + + M
Sbjct: 177 LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDM 236
Query: 64 HYGEQ--LNITKISRTEMGAYLCIAT 87
Y + L+I + G Y C T
Sbjct: 237 PYHIRSILHIPSAELEDSGTYTCNVT 262
Score = 43.9 bits (103), Expect = 4e-06
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 19 SSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTE 78
+ + LTC + W R +Q K + L +T ++ +
Sbjct: 8 PELVLNVSSTFVLTCSGSA----PVVWER-MSQEPPQEMAKAQDGTFSSVLTLTNLTGLD 62
Query: 79 MGAYLCIAT 87
G Y C
Sbjct: 63 TGEYFCTHN 71
Score = 42.4 bits (99), Expect = 1e-05
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 16/129 (12%)
Query: 12 LDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNI 71
L ++ + + E IT+ C+ P + + + + Y Q
Sbjct: 96 LPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKG-------DVALPVPYDHQRGF 147
Query: 72 TKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAY------LCIA 125
+ I E +Y+C T + +N++ + + +CI
Sbjct: 148 SGIF--EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIV 205
Query: 126 TNNVPPSVS 134
N +
Sbjct: 206 IGNEVVNFE 214
Score = 35.4 bits (81), Expect = 0.003
Identities = 6/52 (11%), Positives = 16/52 (30%)
Query: 90 GPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141
+ L +T ++ + G Y C ++ +R + +
Sbjct: 35 QEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 53.3 bits (128), Expect = 2e-10
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
+ + P + E S+ V + L C+ I W R D + + R ++
Sbjct: 2 TLPEQAQPWGVPVE--VESLLVHPGDLLQLRCRLRD-DVQSINWLR-DGVQLVESNRTRI 57
Query: 62 HMHYGEQLNITKISRTEMGAYLCIAT 87
GE++ + + G Y C+ +
Sbjct: 58 T---GEEVEVRDSIPADSGLYACVTS 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 56.0 bits (135), Expect = 3e-10
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
S+ +T+ C + ++ + Q +S V + G+ L K+
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD-LFFKKVQV 310
Query: 77 TEMGAYLCIAT 87
+ G Y C A
Sbjct: 311 EDGGVYTCYAM 321
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 54.7 bits (131), Expect = 4e-10
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHY 65
V P+ + + L C+ EG + +W++ + +
Sbjct: 120 VKPSG---TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW--LAEMT 174
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
+++ S G Y C
Sbjct: 175 SPVISVKNASSEYSGTYSCTVQ 196
Score = 40.1 bits (93), Expect = 6e-05
Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 20/128 (15%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAP----EIKWRREDNQPISINKRKKVHMHYGEQLNITK 73
+ + L CK P +I+W + +++ + ++ G+++
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQV--IILYSGDKIYDNY 64
Query: 74 ISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSV 133
+ G + + +N+T + +++G Y C P
Sbjct: 65 YPDLK-----------GRVHFTSNDVKSGDAS--INVTNLQLSDIGTYQCKVKKA-PGVA 110
Query: 134 SKRITVDV 141
+K+ + V
Sbjct: 111 NKKFLLTV 118
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 55.6 bits (133), Expect = 4e-10
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
P + D P + E T C+A G P PE+K ++ P+ I
Sbjct: 367 YGPRL-DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------- 414
Query: 67 EQLNITKISRTEMGAYLCIAT 87
++R G YLC A
Sbjct: 415 --GESVTVTRDLEGTYLCRAR 433
Score = 37.2 bits (85), Expect = 0.001
Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 60/173 (34%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
+ V E +T+ C+A P ++ QP+ QL +
Sbjct: 289 ILTKPEVSEGTEVTVKCEAH--PRAKVTLNGVPAQPLGPRA----------QLLLKATPE 336
Query: 77 TEMGAYLCIAT--------------------------KIGPLKIFW----EIIFH----- 101
++ C AT + P W +
Sbjct: 337 DNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWG 396
Query: 102 --------MHYGEQL----NITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
+ G ++R G YLC A + V++ +TV+V
Sbjct: 397 NPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQ-GEVTREVTVNVL 448
Score = 33.3 bits (75), Expect = 0.016
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 8/83 (9%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEG---FPAPEIKWRREDNQPISINKRKKVHMH 64
P ++ PS V + TL C+ EG + R + + + V
Sbjct: 85 TPERVELAPLPSWQPVGKNL--TLRCQVEGGAPRANLTVVLLR-GEKELK--REPAVGEP 139
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
+ + C
Sbjct: 140 AEVTTTVLVRRDHHGANFSCRTE 162
Score = 33.3 bits (75), Expect = 0.019
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
+PS V + ++ +TC + KK + G + ++S
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPMLLGIETP--------LPKKELLLPGNNRKVYELSN 56
Query: 77 -TEMGAYLCIAT 87
E +C +
Sbjct: 57 VQEDSQPMCYSN 68
Score = 29.1 bits (64), Expect = 0.47
Identities = 16/166 (9%), Positives = 34/166 (20%), Gaps = 47/166 (28%)
Query: 23 VREEFNITLTCKAEG-FPAPEIKWRRE-DNQPISINKRKKVHMHYGEQLNITKISRTEMG 80
+ + T+ C +G FP E + +Q ++ +
Sbjct: 200 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQ 259
Query: 81 AYLCIAT-----------------------------KIG-------------PLKIFWEI 98
C G + +
Sbjct: 260 RLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVP 319
Query: 99 IFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKR---ITVDV 141
+ QL + ++ C AT V + + + V
Sbjct: 320 AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV 365
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 55.5 bits (134), Expect = 4e-10
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISIN-KRKKVHMHYG 66
P I++ P+ + V E L C+A + W + ++ + ++ +
Sbjct: 341 APVIVEP---PADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSD 396
Query: 67 EQLNITKISRTEMGAYLCIAT 87
LN T ++ + G Y C+ +
Sbjct: 397 GTLNFTNVTVQDTGMYTCMVS 417
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 55.1 bits (133), Expect = 5e-10
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISIN-KRKKVHMHYG 66
P I+D P + + E L C+ P +KW + +S + ++ +
Sbjct: 352 APFIMDA---PRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLND 406
Query: 67 EQLNITKISRTEMGAYLCIAT 87
LN + + ++ G Y C+ T
Sbjct: 407 GTLNFSHVLLSDTGVYTCMVT 427
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 52.0 bits (125), Expect = 5e-10
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
S V + L C+ I W R D ++ + R ++ GE++ +
Sbjct: 7 GVEVESFLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLAESNRTRIT---GEEVEVQDS 61
Query: 75 SRTEMGAYLCIAT 87
+ G Y C+ +
Sbjct: 62 VPADSGLYACVTS 74
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 53.4 bits (128), Expect = 7e-10
Identities = 24/169 (14%), Positives = 41/169 (24%), Gaps = 55/169 (32%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPE-IKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
P + + N+TLTC F KW + LNI
Sbjct: 11 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSE---------ETNSSLNIVNAKF 60
Query: 77 TEMGAYLCIAT----------------------------------------KIGPLKIFW 96
+ G Y C K+ +
Sbjct: 61 EDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIY 120
Query: 97 ----EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141
E + + + ++IT + + G Y C S+ + + V
Sbjct: 121 YKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 41.8 bits (98), Expect = 1e-05
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 16 STPSSVAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
S+ V E + L C + ++ + + D + + + + ++IT
Sbjct: 90 LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALK-------YWYENHNISITNA 141
Query: 75 SRTEMGAYLCIAT 87
+ + G Y C
Sbjct: 142 TVEDSGTYYCTGK 154
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 52.1 bits (125), Expect = 9e-10
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
PP ++ E + G P P + W + QP+ +K V +
Sbjct: 7 YPPRVVSLEEP------ELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESKIIHVEYYQE 59
Query: 67 EQ-----LNITKISRTEMGAYLCIAT 87
+ L K + G Y IA
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAK 85
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 51.9 bits (124), Expect = 1e-09
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 16 STPSSVAVREEFNITLTCKAEGFP---APEIKWRREDNQPISINKRKKVHMH-------- 64
P V+ +IT K + P IKW + ++ K + +
Sbjct: 12 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSR 71
Query: 65 -YGEQLNITKISRTEMGAYLCIAT 87
Y ++ I K G Y C T
Sbjct: 72 VYTFEMQIIKAKDNFAGNYRCEVT 95
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 51.2 bits (123), Expect = 1e-09
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHYGE-QLNITKIS 75
E ++ CK E + ++ W + + +++ ++ G L + I+
Sbjct: 8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQLENSEKYEITYEDGVAILYVKDIT 66
Query: 76 RTEMGAYLCIAT 87
+ + G Y C
Sbjct: 67 KLDDGTYRCKVV 78
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 53.2 bits (127), Expect = 1e-09
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRT 77
S + +++LTC G +P WR + + P++ K + L + +S
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---GKVTNEGTTSTLTMNPVSFG 64
Query: 78 EMGAYLCIAT 87
+YLC AT
Sbjct: 65 NEHSYLCTAT 74
Score = 33.2 bits (75), Expect = 0.014
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 18 PSSVAVREEFNITLTCKAEG---FPAPEIKWRRED----NQPISINKRKKVHMHYGEQLN 70
S + IT+ C F EI + D +Q + +K ++
Sbjct: 98 HLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVT 157
Query: 71 ITKISRTEMGAYLCIAT 87
T + +C A
Sbjct: 158 FTPVIEDIGKVLVCRAK 174
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 53.4 bits (128), Expect = 2e-09
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
PP I + PS + + C A + + + I +Y
Sbjct: 184 PEPPQI---KLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNY 240
Query: 66 GEQ---LNITKISRTEMGAYLCIAT 87
++ L++ + + G Y C+A+
Sbjct: 241 YKKVRALSLNAVDFQDAGIYSCVAS 265
Score = 51.9 bits (124), Expect = 6e-09
Identities = 13/82 (15%), Positives = 20/82 (24%), Gaps = 5/82 (6%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHY 65
P + + V V E L C + RE + +
Sbjct: 87 DPAHSWNLL--AQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR 144
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
G I K + Y+C
Sbjct: 145 G--FIIRKAKVLDSNTYVCKTM 164
Score = 44.2 bits (104), Expect = 3e-06
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 12/80 (15%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
P I E + + V +TL C + G ++W + +++ G
Sbjct: 4 APVI---EPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPES-----PGS 51
Query: 68 QLNITKISRTEMGAYLCIAT 87
L + G Y C
Sbjct: 52 TLTTRNATFKNTGTYRCTEL 71
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 50.4 bits (120), Expect = 3e-09
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 16 STPSSVAVREEFNITLTCKAEGFP---APEIKWRREDNQPISINKRKKVHMH-------- 64
P V +IT + + G P +KW + +S + + +H
Sbjct: 9 MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASK 68
Query: 65 -YGEQLNITKISRTEMGAYLCIAT 87
Y +L+IT G+Y C +
Sbjct: 69 VYLFELHITDAQPAFTGSYRCEVS 92
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 50.9 bits (121), Expect = 3e-09
Identities = 20/130 (15%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 5 KSVPPNIL--DTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVH 62
+ PP I P ++ V + L G PAP + W++ Q R
Sbjct: 10 RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR---- 65
Query: 63 MHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGE---QLNITKISRTEMG 119
E L E + + + + + G
Sbjct: 66 ---------PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEG 116
Query: 120 AYLCIATNNV 129
Y N V
Sbjct: 117 VYTVTVKNPV 126
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 51.4 bits (123), Expect = 3e-09
Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 55/169 (32%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPE-IKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
P +V E+ ++TL C+ P +W + IS I +
Sbjct: 14 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFH-NESLISSQASS---------YFIDAATV 63
Query: 77 TEMGAYLCIAT----------------------------------------KIGPLKIFW 96
+ G Y C K+ +
Sbjct: 64 NDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTY 123
Query: 97 ----EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141
+ + H+ +I K + + G+Y C S+ + + +
Sbjct: 124 LQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 41.8 bits (98), Expect = 1e-05
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMH 64
+ +L +EE I L C + + ++ + + + + H
Sbjct: 87 HIGWLLL----QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDRKY-------FH 134
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
+ +I K + + G+Y C
Sbjct: 135 HNSDFHIPKATLKDSGSYFCRGL 157
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 52.4 bits (125), Expect = 5e-09
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 8 PPNILDTESTPSSVAVREEFNIT---LTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
L S P + + + L+ +I+W + D+ + + K + +
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLLDKDNEKFLSVR 177
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
L + ++ + G Y C+ T
Sbjct: 178 GTTHLLVHDVALEDAGYYRCVLT 200
Score = 47.0 bits (111), Expect = 3e-07
Identities = 12/117 (10%), Positives = 33/117 (28%), Gaps = 12/117 (10%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY-GEQLNITKISRTEMGAYLCIAT 87
+ A P + W + ++ ++ ++ M L + + + G Y+C
Sbjct: 43 VPYWLWASVSPRINLTWHK-NDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTR 101
Query: 88 -KIGPLKIFWEIIFH---------MHYGEQLNITKISRTEMGAYLCIATNNVPPSVS 134
K+ E+ + Y + L ++ + +
Sbjct: 102 NASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQ 158
Score = 45.8 bits (108), Expect = 7e-07
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 20/100 (20%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKA---EGFPAPEIKWRREDNQPISINKRKKV 61
+ P I+ S +++ +T+ CK G P + W ++ I
Sbjct: 223 EETIPVII---SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGR 279
Query: 62 HMHYGEQ-------------LNITKISRTEMGA-YLCIAT 87
Q L ++R ++ + C+
Sbjct: 280 VTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVH 319
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 49.9 bits (119), Expect = 7e-09
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE-IKWRREDNQ-PISINKRKKVHMH 64
PP I S+ + + C P P+ I W ++N + R V
Sbjct: 13 GPPII----SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI 68
Query: 65 YGEQ-----LNITKISRTEMGA-YLCIAT 87
E+ L I+ I R + Y C A
Sbjct: 69 STEEGVISTLTISNIVRADFQTIYNCTAW 97
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 51.1 bits (122), Expect = 8e-09
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
S V E N+ L CK I W + D + IS++++ L IT+ S+
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICT-LLITEFSK 180
Query: 77 TEMGAYLCIAT 87
+ G Y I
Sbjct: 181 KDAGIYEVILK 191
Score = 45.3 bits (107), Expect = 9e-07
Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 17 TPSSVAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVHM---HYGEQLNIT 72
+ +V + E+ + +AE ++ + + + I + K+H+ ++ +
Sbjct: 8 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYKMHIDRNTGIIEMFME 66
Query: 73 KISRTEMGAYLCIAT 87
K+ + G Y
Sbjct: 67 KLQDEDEGTYTFQLQ 81
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 49.5 bits (118), Expect = 3e-08
Identities = 22/169 (13%), Positives = 43/169 (25%), Gaps = 55/169 (32%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPE-IKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
P V E+ ++TL C+ P + +W + IS I +
Sbjct: 14 PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFH-NESLISSQASS---------YFIDAATV 63
Query: 77 TEMGAYLCIAT----------------------------------------KIGPLKIFW 96
+ G Y C K+ +
Sbjct: 64 DDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTY 123
Query: 97 ----EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITVDV 141
+ + H+ I K + + G+Y C S+ + + +
Sbjct: 124 LQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 41.4 bits (97), Expect = 2e-05
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 13/83 (15%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVHMH 64
+ +L +EE I L C + ++ + + + + H
Sbjct: 87 HIGWLLL----QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKGRKYF-------H 134
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
+ I K + + G+Y C
Sbjct: 135 HNSDFYIPKATLKDSGSYFCRGL 157
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 48.9 bits (116), Expect = 3e-08
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFP-APEIKWRRE---DNQPISINKRKKV 61
PP + ++ SS + E L CK+E P + W + +++ + +
Sbjct: 81 HGPPRV---KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRF 137
Query: 62 HM---HYGEQLNITKISRTE-MGAYLCIAT 87
+ +L+I ++ G Y C T
Sbjct: 138 FVSSSQGRSELHIENLNMEADPGQYRCNGT 167
Score = 46.6 bits (110), Expect = 3e-07
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 9/62 (14%)
Query: 28 NITLTCKAEGFPAPEI--KWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCI 85
I LTC +W + + + G++ S + G Y C+
Sbjct: 15 KILLTCSLNDSATEVTGHRWLK-GGVVLKEDALP------GQKTEFKVDSDDQWGEYSCV 67
Query: 86 AT 87
Sbjct: 68 FL 69
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 47.4 bits (113), Expect = 3e-08
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 14 TESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE--QLNI 71
+ + V + I LT + E+KW + + Q I ++ K + G L I
Sbjct: 19 QKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLK-NGQEIQMSGSKYIFESIGAKRTLTI 76
Query: 72 TKISRTEMGAYLCIAT 87
++ S + AY C+
Sbjct: 77 SQCSLADDAAYQCVVG 92
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 49.5 bits (118), Expect = 3e-08
Identities = 26/170 (15%), Positives = 41/170 (24%), Gaps = 56/170 (32%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPE-IKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
P V+V +E +TL C+ P +W + + IT S
Sbjct: 8 PPWVSVFQEETVTLHCEVLHLPGSSSTQWFL-NGTATQTS---------TPSYRITSASV 57
Query: 77 TEMGAYLCIATKIG----------------------------------------PLKIFW 96
+ G Y C G + +
Sbjct: 58 NDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY 117
Query: 97 ----EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVP-PSVSKRITVDV 141
+ H+ L I K + + G Y C S +TV
Sbjct: 118 YRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE 167
Score = 46.4 bits (110), Expect = 5e-07
Identities = 25/181 (13%), Positives = 42/181 (23%), Gaps = 64/181 (35%)
Query: 17 TPSSVAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKIS 75
SS E + L C A + + R + + H+ L I K +
Sbjct: 88 QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR-NGKAFKFF-------HWNSNLTILKTN 139
Query: 76 RTEMGAYLCIA-------------------------------------------TKIGPL 92
+ G Y C TK+
Sbjct: 140 ISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQ 199
Query: 93 KIFWEIIF----------HMHYGEQLNITKISRTEMGAYLCIATNNVP--PSVSKRITVD 140
+ ++ F + + I R + G Y C A S + +
Sbjct: 200 RPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQ 259
Query: 141 V 141
V
Sbjct: 260 V 260
Score = 41.4 bits (97), Expect = 2e-05
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 16 STPSSVAVREEFNITLTCKAEGFP-APEIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
+ + + E +TL+C+ + P ++ + + + + I
Sbjct: 175 NASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR----NTSSEYQILTA 230
Query: 75 SRTEMGAYLCIAT 87
R + G Y C A
Sbjct: 231 RREDSGLYWCEAA 243
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 49.8 bits (119), Expect = 4e-08
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE---QLNI 71
P V E + C+ P + W ++D + + + K Y L I
Sbjct: 486 IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE---LKQSVKYMKRYNGNDYGLTI 542
Query: 72 TKISRTEMGAYLCIAT 87
++ + G Y A
Sbjct: 543 NRVKGDDKGEYTVRAK 558
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 49.1 bits (116), Expect = 4e-08
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+ TP V++ + LTC P EI W+ +++ I ++ K
Sbjct: 109 DGNEEMGGITQTPYKVSISGT-TVILTCPQY--PGSEILWQH-NDKNIGGDEDDKNIGSD 164
Query: 66 GEQLNITKISRTE-MGAYLCIAT 87
+ L++ + S E G Y+C
Sbjct: 165 EDHLSLKEFSELEQSGYYVCYPR 187
Score = 43.0 bits (100), Expect = 6e-06
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 24 REEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYL 83
+E+ ++ LTC A I W + D + I K N+ ++ G Y
Sbjct: 16 QEDGSVLLTC---DAEAKNITWFK-DGKMIGFLTEDKKK------WNLGSNAKDPRGMYQ 65
Query: 84 CIATK 88
C ++
Sbjct: 66 CKGSQ 70
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 49.2 bits (117), Expect = 5e-08
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYG 66
+ P T+ +V ++ C + P E W + D + R +V
Sbjct: 2 IDP---FTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSK-DYVSTEDSPRLEVESKGN 56
Query: 67 E-QLNITKISRTEMGAYLCIAT 87
+ ++ + ++G Y C T
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVT 78
Score = 48.1 bits (114), Expect = 1e-07
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHYGEQLNITKIS 75
S V E N+ L CK I W + D + IS++++ L IT+ S
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICT-LLITEFS 284
Query: 76 RTEMGAYLCIAT 87
+ + G Y I
Sbjct: 285 KKDAGIYEVILK 296
Score = 45.4 bits (107), Expect = 1e-06
Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVHM--- 63
+ +V + E+ + +AE ++ + + + I + K+H+
Sbjct: 104 HKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYKMHIDRN 162
Query: 64 HYGEQLNITKISRTEMGAYLCIAT 87
++ + K+ + G Y
Sbjct: 163 TGIIEMFMEKLQDEDEGTYTFQLQ 186
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 49.3 bits (117), Expect = 5e-08
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAE-GFPAPEIKWRREDNQPISINKRKKVH--- 62
P + V + E C + G P +I W D + +
Sbjct: 116 AKPQN---TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHS-DLGGMPNTSQVPGFLSG 171
Query: 63 -MHYGEQLNITKISRTEMGAYLCIAT-KIGPLKIFWEIIFHMHYGEQLNITKISRT---- 116
+ + S+ + C + + ++Y +++I+
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG 231
Query: 117 EMGAYL-CIATNNVPPS 132
+ A L C A +N P+
Sbjct: 232 QNEATLTCDARSNPEPT 248
Score = 43.2 bits (101), Expect = 7e-06
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 47/127 (37%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
S + + TLTC A P P W P+
Sbjct: 222 SGYDNNWYLGQNEATLTCDARSNPEPTGYNWST-TMGPLPPF------------------ 262
Query: 75 SRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVS 134
+ G QL I + + +C TN + +
Sbjct: 263 --------------------------AVAQGAQLLIRPVDKPINTTLICNVTNAL-GARQ 295
Query: 135 KRITVDV 141
+TV V
Sbjct: 296 AELTVQV 302
Score = 40.9 bits (95), Expect = 4e-05
Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 26/131 (19%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAP-----EIKWRREDNQPISINKRKKVHMHYGEQLN 70
P+ V ++TL C + ++ W R + Y E
Sbjct: 5 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKR 64
Query: 71 ITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVP 130
+ + +GA L A+ L + + + G Y C+
Sbjct: 65 L-EFVAARLGAELRNAS--------------------LRMFGLRVEDEGNYTCLFVTFPQ 103
Query: 131 PSVSKRITVDV 141
S S I + V
Sbjct: 104 GSRSVDIWLRV 114
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 49.1 bits (116), Expect = 6e-08
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCK-AEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
PP+ + + +++ I L C I W + +NQ + I+ K +
Sbjct: 127 KPPSCI---PETYELGTHDKYGIDLYCGILYAKHYNNITWYK-NNQELIIDGTK--YSQS 180
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
G+ L I + G Y C
Sbjct: 181 GQNLIIHNPELEDSGRYDCYVH 202
Score = 43.7 bits (102), Expect = 5e-06
Identities = 11/91 (12%), Positives = 20/91 (21%), Gaps = 10/91 (10%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE----IKWRREDNQPISINKRKKVH 62
+ + V +TC A I W I ++
Sbjct: 224 PSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSI 283
Query: 63 MHYGEQ-----LNITKISRTEMGA-YLCIAT 87
+ L ++ +G Y C
Sbjct: 284 LTSSGGITEATLYFENVTEEYIGNTYTCRGH 314
Score = 25.6 bits (55), Expect = 7.8
Identities = 14/147 (9%), Positives = 26/147 (17%), Gaps = 54/147 (36%)
Query: 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEG---------FPAPEIKWRREDNQPIS 54
K + P+ + + C + W +
Sbjct: 24 SKWLNPSC--MFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP 81
Query: 55 INKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKIS 114
+N+R K L I + +
Sbjct: 82 LNRRVK-----NGDLWIANYTSNDSH---------------------------------- 102
Query: 115 RTEMGAYLCIATNNVPPSVSKRITVDV 141
YLC T V + +
Sbjct: 103 ----RRYLCTVTTKNGDCVQGIVRSHI 125
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 47.0 bits (112), Expect = 6e-08
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S+ S P + E TL C+ ++W++ + + R +
Sbjct: 2 SSGSSGPARFT---QDLKTKEASEGATATLQCELS--KVAPVEWKK-GPETLRDGGRYSL 55
Query: 62 HMHYGEQ-LNITKISRTEMGAYLCIATK 88
L I +S + G Y C+ +
Sbjct: 56 KQDGTRCELQIHDLSVADAGEYSCMCGQ 83
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 48.6 bits (115), Expect = 9e-08
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTC------KAEGFPAPEIKWRREDNQPISINKRKKV 61
PN+ + + L C K E P+++W + D +P+ ++
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLLLDNIHFS 158
Query: 62 HMHYGEQLNITKISRTEMGAYLCIAT 87
+ ++L + ++ G Y C A+
Sbjct: 159 GV--KDRLIVMNVAEKHRGNYTCHAS 182
Score = 45.9 bits (108), Expect = 8e-07
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 15/96 (15%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRR-----EDNQPISINKRK 59
K P I+ ++ V I L C G + W+ +++ P+
Sbjct: 205 KPTRPVIV--SPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYY 262
Query: 60 KVHMHYGEQ-------LNITKISRTEM-GAYLCIAT 87
V ++ LNI++I + C A
Sbjct: 263 SVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK 298
Score = 44.7 bits (105), Expect = 2e-06
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 14 TESTPSSVAVREEFNI-TLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMH-YGEQLN 70
E + V I C I W + D+ ++ + +H + E+L
Sbjct: 7 KEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYK-DDSKTPVSTEQASRIHQHKEKLW 65
Query: 71 ITKISRTEMGAYLCIAT 87
+ G Y C+
Sbjct: 66 FVPAKVEDSGHYYCVVR 82
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 48.2 bits (114), Expect = 1e-07
Identities = 20/189 (10%), Positives = 48/189 (25%), Gaps = 55/189 (29%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCK-AEGFPAPEIKWRREDNQPISINKRKKVH--MH 64
I T++ + +++ + TC A G P + W + + + +
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191
Query: 65 YGEQLNITKISRTEMGAYLCIATKIG---------------------------------- 90
+ + + CI
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251
Query: 91 ----------PLKIFW-----EIIFHMHYGEQ--LNITKISRTEMGAYLCIATNNVPPSV 133
+ W + + + I+ + G Y+C ATN + +
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPI-GTR 310
Query: 134 SKRITVDVE 142
S ++ V++
Sbjct: 311 SGQVEVNIT 319
Score = 47.8 bits (113), Expect = 2e-07
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHY 65
P + T + ++ LTCKA+ P E W N + K V
Sbjct: 230 YEPEV--TIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTT-LNGSLP----KGVEAQN 282
Query: 66 GEQLNITKISRTEMGAYLCIAT 87
I+ + G Y+C AT
Sbjct: 283 RTLFFKGPINYSLAGTYICEAT 304
Score = 34.0 bits (77), Expect = 0.010
Identities = 15/144 (10%), Positives = 40/144 (27%), Gaps = 40/144 (27%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE----IKWRREDNQP------ISINK 57
P ++ S+ ++ L C + W++ N + +
Sbjct: 14 PSQVV---QVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70
Query: 58 RKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTE 117
V Y E++ + S T+ + ++++ +
Sbjct: 71 GVSVLAPYRERVEFLRPSFTDG---------------------------TIRLSRLELED 103
Query: 118 MGAYLCIATNNVPPSVSKRITVDV 141
G Y+C + ++ + V
Sbjct: 104 EGVYICEFATFPTGNRESQLNLTV 127
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 45.8 bits (109), Expect = 2e-07
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S+ S +++ V E+ TCK E PA + WR+ + + + +
Sbjct: 2 SSGSSGANCFT---EELTNLQVEEKGTAVFTCKTEH-PAATVTWRK-GLLELRASGKHQP 56
Query: 62 HMHYGE-QLNITKISRTEMGAYLCIA 86
+L I+ + + + Y C
Sbjct: 57 SQEGLTLRLTISALEKADSDTYTCDI 82
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 45.8 bits (108), Expect = 2e-07
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWR-REDNQPIS---------I 55
P I P + + +++ TC A + + DN+ + +
Sbjct: 8 FPXPQIT---VQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL 64
Query: 56 NKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
+ M Y L + + T G Y C+ +
Sbjct: 65 RAQGGELMEYTTILRLRNVEFTSEGXYQCVIS 96
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 45.5 bits (108), Expect = 2e-07
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE-QLNITKISR 76
+ V + + + P E+KW + + Q I + + + L I
Sbjct: 15 DPAYQVDKGGRVRFVVEL-ADPKLEVKWYK-NGQEIRPSTKYIFEHKGCQRILFINNCQM 72
Query: 77 TEMGAYLCIA 86
T+ Y A
Sbjct: 73 TDDSEYYVTA 82
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 45.5 bits (108), Expect = 2e-07
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
+ + + S VA + LTC+ P E++W + D + + + +
Sbjct: 8 TDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTK-DGEEVVESPALLLQKED 65
Query: 66 GE-QLNITKISRTEMGAYLCIA 86
+L + + + G YLC
Sbjct: 66 TVRRLVLPAVQLEDSGEYLCEI 87
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 44.6 bits (106), Expect = 3e-07
Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S+ S P I+ + V + + + ++ W + + ++ K
Sbjct: 2 SSGSSGPVLIV---TPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMK-NGVELTREDSFKA 56
Query: 62 HMHYGE-----QLNITKISRTEMGAYLCIAT 87
+ + L + + + + G Y I
Sbjct: 57 RYRFKKDGKRHILIFSDVVQEDRGRYQVITN 87
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 45.1 bits (106), Expect = 4e-07
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 9 PNILDTE-STPSSVAVREEFNITLTCKAEGFPAPEIKWRRE-----DNQPISINKRKKVH 62
I D S + + + L C A I + E +N+ K
Sbjct: 5 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 64
Query: 63 MHYGEQ-----LNITKISRTEMGAYLCIAT 87
+ L I ++R++ G Y C A+
Sbjct: 65 SGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 94
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 44.6 bits (106), Expect = 5e-07
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
S P I+ V ++ L C+ P + W + D + I +++ +
Sbjct: 6 SGPAAII---KPLEDQWVAPGEDVELRCELSRAGTP-VHWLK-DRKAIRKSQK--YDVVC 58
Query: 66 GEQ---LNITKISRTEMGAYLCIAT 87
L I S + G Y C
Sbjct: 59 EGTMAMLVIRGASLKDAGEYTCEVE 83
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 44.2 bits (105), Expect = 5e-07
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
S + + L C+ +KW + + + I + + +
Sbjct: 4 GSSGIMVT---KQLEDTTAYCGERVELECEVSE-DDANVKWFK-NGEEIIPGPKSRYRIR 58
Query: 65 Y-GE--QLNITKISRTEMGAYLCIAT 87
G+ L I ++ + Y + T
Sbjct: 59 VEGKKHILIIEGATKADAAEYSVMTT 84
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 44.3 bits (105), Expect = 5e-07
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMH 64
+++P + E L C+ ++W + ++ + R +
Sbjct: 16 RALPIKFT---EGLRNEEATEGATAVLRCELSK--MAPVEWWK-GHETLRDGDRHSLRQD 69
Query: 65 YGEQ-LNITKISRTEMGAYLCIA 86
L I + + G YLC+
Sbjct: 70 GARCELQIRGLVAEDAGEYLCMC 92
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 44.0 bits (103), Expect = 1e-06
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 16 STPSSVAVREEFNITLTCKAEGFP---APEIKWRREDNQPISINKRKKVHMH-------- 64
P SV+V + + K G P IKW + + +
Sbjct: 17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASN 76
Query: 65 -YGEQLNITKISRTEMGAYLCIAT 87
Y +L+I K+ + G Y
Sbjct: 77 VYTVELHIGKVVLGDRGYYRLEVK 100
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 43.2 bits (102), Expect = 1e-06
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
S + V + TL+C+ E+ W + D + +S + + +V
Sbjct: 6 SGKVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYK-DGKKLSSSSKVRVEAVG 63
Query: 66 GE-QLNITKISRTEMGAYLCIA 86
+L + + + E G Y C A
Sbjct: 64 CTRRLVVQQAGQAEAGEYSCEA 85
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 43.1 bits (102), Expect = 1e-06
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 16/85 (18%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPI------SINKRKKV 61
P + V E TL C AP +KW N + S+ + +
Sbjct: 8 PVRFQ---EALKDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVLRPGDKYSLRQEGAM 62
Query: 62 HMHYGEQLNITKISRTEMGAYLCIA 86
+L + + + G Y C
Sbjct: 63 L-----ELVVRNLRPQDSGRYSCSF 82
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 42.7 bits (101), Expect = 2e-06
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ-LNITKI 74
P SV V + E +++W+R IS + + + L + ++
Sbjct: 13 KKPRSVEVAAGSPAVFEAETER-AGVKVRWQR-GGSDISASNKYGLATEGTRHTLTVREV 70
Query: 75 SRTEMGAYLCIA 86
+ G+Y IA
Sbjct: 71 GPADQGSYAVIA 82
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 43.1 bits (101), Expect = 2e-06
Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 32/126 (25%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKIS 75
+ ++ V E +TL C ++W I +N+ + K S
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYP-----------VLKNS 54
Query: 76 RTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSK 135
+ ++++ H + + ++ + G Y C+ ++ +K
Sbjct: 55 K-------------------YQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD--SVSTK 93
Query: 136 RITVDV 141
+ V V
Sbjct: 94 EVKVIV 99
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 42.8 bits (101), Expect = 2e-06
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S+ S +L + + V+ C+ KW + + + +KR +
Sbjct: 2 SSGSSGQLEVL---QDIADLTVKAAEQAVFKCEVSD-EKVTGKWYK-NGVEVRPSKR--I 54
Query: 62 HMHYGEQ---LNITKISRTEMGAYLCIAT 87
+ + + L I + + G Y +
Sbjct: 55 TISHVGRFHKLVIDDVRPEDEGDYTFVPD 83
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 42.8 bits (100), Expect = 2e-06
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTE-MGAYLCIA 86
+ LTC P EI W+ +++ I ++ K + L++ + S E G Y+C
Sbjct: 24 VILTCPQY--PGSEILWQH-NDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 42.4 bits (100), Expect = 3e-06
Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCK-AEGFPAPEIKWRREDNQPISINKRKK 60
S+ S I ++ V E + + C + + W + + + R +
Sbjct: 2 SSGSSGHVGIT---KRLKTMEVLEGESCSFECVLSHESASDPAMWTV-GGKTVGSSSRFQ 57
Query: 61 VHMHYGEQ-LNITKISRTEMGAYLCIA 86
+ L + + + ++ G +
Sbjct: 58 ATRQGRKYILVVREAAPSDAGEVVFSV 84
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 43.7 bits (103), Expect = 3e-06
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
N TLTC+ PE+ + D + + +++R + K + + + C A
Sbjct: 117 NTTLTCEVMNGTDPELNLYQ-DGKHLKLSQR----------VITHKWTTSLSAKFKCTAG 165
Score = 36.4 bits (84), Expect = 0.001
Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 11/132 (8%)
Query: 13 DTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPI---------SINKRKKVHM 63
T + + A+ ++ N+ + +IKW + ++ + ++ +
Sbjct: 3 ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62
Query: 64 HYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYL- 122
L I + + Y K E IF + E+++ KIS T + L
Sbjct: 63 FKNGTLKIKHLKTDDQDIYKVSIYDTK-GKNVLEKIFDLKIQERVSKPKISWTCINTTLT 121
Query: 123 CIATNNVPPSVS 134
C N P ++
Sbjct: 122 CEVMNGTDPELN 133
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 43.5 bits (102), Expect = 4e-06
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
+ V + LTC+A G+P E+ W+ + P + + + Y + ++ ++
Sbjct: 107 RIDTRILEVPGTGEVQLTCQARGYPLAEVSWQN-VSVPANTSHIRTPEGLY-QVTSVLRL 164
Query: 75 SRTEMGAYLCIAT 87
+ C+
Sbjct: 165 KPQPSRNFSCMFW 177
Score = 38.9 bits (90), Expect = 2e-04
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 11/128 (8%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRR-----EDNQPISINKRKKV---HMHYGEQ- 68
V +++L C + E++ R +N ++R + + G+
Sbjct: 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL 68
Query: 69 LNITKISRTEMGAYLCIA-TKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYL-CIAT 126
+I + + G Y C+ + + Y L C A
Sbjct: 69 FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQAR 128
Query: 127 NNVPPSVS 134
VS
Sbjct: 129 GYPLAEVS 136
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 42.0 bits (99), Expect = 4e-06
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKV 61
S+ S P +IL + S+ + LTC+ W + D Q + ++ V
Sbjct: 2 SSGSSGPVHILSPQD-KVSLTFTTSERVVLTCELSR-VDFPATWYK-DGQKVEESELLVV 58
Query: 62 HMHYGEQ-LNITKISRTEMGAYLCIA 86
M + L + + + G + C
Sbjct: 59 KMDGRKHRLILPEAKVQDSGEFECRT 84
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 43.7 bits (102), Expect = 5e-06
Identities = 14/85 (16%), Positives = 20/85 (23%), Gaps = 9/85 (10%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTC-----KAEGFPAPEIKWRREDNQPISINKRKKVH 62
P E +TC P I W I +
Sbjct: 117 DSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM-GCYKI---QNFNNV 172
Query: 63 MHYGEQLNITKISRTEMGAYLCIAT 87
+ G L+ + G Y C+ T
Sbjct: 173 IPEGMNLSFLIALISNNGNYTCVVT 197
Score = 41.0 bits (95), Expect = 4e-05
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 15/98 (15%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKA----EGFPAPEIKWRREDNQPISINKRKK 60
K+ P ++ + + + + C E+ W + +P I
Sbjct: 220 KNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVT 279
Query: 61 VHM----------HYGEQLNITKISRTEMGA-YLCIAT 87
++ + L+I K++ ++ Y+C A
Sbjct: 280 INESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317
Score = 32.9 bits (74), Expect = 0.021
Identities = 7/64 (10%), Positives = 15/64 (23%), Gaps = 5/64 (7%)
Query: 29 ITLTCKAEGFPAPEIKWRREDN-----QPISINKRKKVHMHYGEQLNITKISRTEMGAYL 83
+ + W +PI+ + + L + G Y
Sbjct: 36 LKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYT 95
Query: 84 CIAT 87
C+
Sbjct: 96 CMLR 99
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 43.2 bits (101), Expect = 7e-06
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 3/83 (3%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKW---RREDNQPISINKRKKVHMH 64
P +V V T C A G + + +
Sbjct: 161 PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 220
Query: 65 YGEQLNITKISRTEMGAYLCIAT 87
+ N+ ++ + G Y C+
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIR 243
Score = 36.7 bits (84), Expect = 0.001
Identities = 11/113 (9%), Positives = 29/113 (25%), Gaps = 16/113 (14%)
Query: 29 ITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATK 88
+ + K P W + + N+ +L I+ + T
Sbjct: 94 LNVYVKVNNGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITS 144
Query: 89 -------IGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVS 134
I +K+ + ++ +++ + + C A
Sbjct: 145 GHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDR 197
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 41.9 bits (98), Expect = 7e-06
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
S P + + AV + +G PAP ++W + ++
Sbjct: 1 SHMPASVQLHT-----AVEMHH-WCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLE 53
Query: 66 GEQ--------LNITKISRTEMGAYLCIAT 87
L + + + G Y +A
Sbjct: 54 PAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 41.9 bits (97), Expect = 3e-05
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 10/141 (7%)
Query: 4 YKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHM 63
+ V ++ + + ++ C+ ++ + + R ++
Sbjct: 224 PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNP 283
Query: 64 HYGE---QLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGA 120
+ + IT + + + G YLC A G L+ I + + + S T +
Sbjct: 284 QDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKG 343
Query: 121 YL-------CIATNNVPPSVS 134
C S+
Sbjct: 344 VAGSSVAVLCPYNRKESKSIK 364
Score = 40.8 bits (94), Expect = 5e-05
Identities = 11/121 (9%), Positives = 30/121 (24%), Gaps = 19/121 (15%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ------- 68
+P+ V ++ + C + IK+ + V +
Sbjct: 336 RSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL 395
Query: 69 ------------LNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRT 116
+ + +++ + G Y C+ + EI ++
Sbjct: 396 SLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAV 455
Query: 117 E 117
Sbjct: 456 L 456
Score = 34.6 bits (78), Expect = 0.008
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 11/94 (11%)
Query: 16 STPSSVAVREEFNITLTC----KAEGFPAPEIKWRREDNQPIS----INKRKKVHMHYGE 67
P +V + + C K + KW Q + + V+
Sbjct: 447 KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENS 506
Query: 68 Q---LNITKISRTEMGAYLCIATKIGPLKIFWEI 98
+ L + ++R + G Y C + +
Sbjct: 507 RLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAV 540
Score = 31.5 bits (70), Expect = 0.085
Identities = 16/140 (11%), Positives = 35/140 (25%), Gaps = 22/140 (15%)
Query: 16 STPSSVAVREEFNITLTCKAE---GFPAPEIKWRRED-----------NQPISINKRKKV 61
P V E ++++TC W R+ +S +
Sbjct: 5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRA 64
Query: 62 HMHYGEQ-----LNITKISRTEMGAYLCIATKIGP---LKIFWEIIFHMHYGEQLNITKI 113
++ + +NI ++S+ + G Y C + E+ + +
Sbjct: 65 NLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTV 124
Query: 114 SRTEMGAYLCIATNNVPPSV 133
C
Sbjct: 125 DLGRTVTINCPFKTENAQKR 144
Score = 31.1 bits (69), Expect = 0.11
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIK-WRREDNQPISI------------NKRKKVHM 63
V +T+ C + A + K ++ + R ++ +
Sbjct: 118 DTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDI 177
Query: 64 HYGEQ----LNITKISRTEMGAYLCIATKIG 90
Q + I ++ ++ G YLC A
Sbjct: 178 QGTGQLLFSVVINQLRLSDAGQYLCQAGDDS 208
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 39.6 bits (93), Expect = 3e-05
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 11/85 (12%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHY 65
S IL + + V I L C+ KW + + P+ + R + +
Sbjct: 5 SSGLKIL---TPLTDQTVNLGKEICLKCEISE--NIPGKWTK-NGLPVQESDR--LKVVQ 56
Query: 66 GEQ---LNITKISRTEMGAYLCIAT 87
+ L I + G Y+
Sbjct: 57 KGRIHKLVIANALTEDEGDYVFAPD 81
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 40.7 bits (94), Expect = 4e-05
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 12 LDTESTPSSVAVREEFNITLTCKAEGF-PAPEIKWRREDNQPISINKRKKVHMHYGEQ-L 69
L E VAV + LTC+ ++WR D V G L
Sbjct: 8 LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS------LGAVQSDTGRSVL 61
Query: 70 NITKISRTEMGAYLCIAT 87
+ S + G +C+ +
Sbjct: 62 TVRNASLSAAGTRVCVGS 79
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 39.1 bits (91), Expect = 6e-05
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKK--------VHMHYG 66
+V V E LTC+ + ++W Q + + +K V +
Sbjct: 10 FPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWH 69
Query: 67 E-QLNITKISRTEMGAYLC 84
E ++++ +S ++ G Y C
Sbjct: 70 ELSISVSDVSLSDEGQYTC 88
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 39.6 bits (92), Expect = 8e-05
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
N TLTC+ E+K + + + Q ++ + C A
Sbjct: 112 NATLTCEVLEGTDVELKLYQ-GKEHLR----------SLRQKTMSYQWTNLRAPFKCKAV 160
Score = 38.0 bits (88), Expect = 3e-04
Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 11/127 (8%)
Query: 18 PSSVAVREEFNITLTCK--AEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ------- 68
+V I L E++W R ++ K + G
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 69 LNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYL-CIATN 127
L I ++R + G Y + E ++ I A L C
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTN-GTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLE 121
Query: 128 NVPPSVS 134
+
Sbjct: 122 GTDVELK 128
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 40.2 bits (93), Expect = 8e-05
Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 9/129 (6%)
Query: 15 ESTPSSVAVREEFNITLTCKA-EGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITK 73
E + ++TLTC E + W S R G +L +
Sbjct: 10 EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM---GRRLLLRS 66
Query: 74 ISRTEMGAYLCIATKIGPLKIFWEIIFHMHY-GEQLNITKISRTEMGAYLCIATNNVPPS 132
+ + G Y C + + + E+ ++ ++ + +C PS
Sbjct: 67 VQLHDSGNYSCYRAG----RPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPS 122
Query: 133 VSKRITVDV 141
++ + + V
Sbjct: 123 LTTKAVLLV 131
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 39.8 bits (92), Expect = 8e-05
Identities = 8/120 (6%), Positives = 26/120 (21%), Gaps = 8/120 (6%)
Query: 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMG 80
+ + + + C + + + ++ + I + G
Sbjct: 19 ITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 81 AYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYL-------CIATNNVPPSV 133
C A I + ++ + + C A + +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Score = 39.4 bits (91), Expect = 1e-04
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 7 VPPNILDTESTPSS-VAVREEFNITLTCKAEGFPAPEIKWR-----REDNQPISINKRKK 60
V I D +PS + + + L C A I + + +N+ K
Sbjct: 100 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 159
Query: 61 VHMHYGEQ-----LNITKISRTEMGAYLCIAT 87
+ L I ++R++ G Y C A+
Sbjct: 160 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 191
Score = 28.6 bits (63), Expect = 0.64
Identities = 9/43 (20%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 97 EIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVSKRITV 139
I + G I + G C A N S V
Sbjct: 57 RISWDSKKG--FTIPSYMISYAGMVFCEAKINDESYQSIMYIV 97
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 39.8 bits (92), Expect = 9e-05
Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 33/142 (23%)
Query: 7 VPPNILDTESTPSSVAV-REEFNITLTCKAEGF-PAPEIKWRREDNQPISINKRKKVHMH 64
P + +++V + TC + PAP+I W R + Q + +
Sbjct: 114 AKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR-NGQRLEVPVEMN---- 168
Query: 65 YGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCI 124
E ++ R G +T L + ++ C
Sbjct: 169 -PEGYMTSRTVREASGLLSLTST--------------------LYLRLRKDDRDASFHCA 207
Query: 125 ATNNVPP-----SVSKRITVDV 141
A ++P S + +
Sbjct: 208 AHYSLPEGRHGRLDSPTFHLTL 229
Score = 32.5 bits (73), Expect = 0.027
Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 20/127 (15%)
Query: 16 STPSSVAVREEFNITLTCKAEGFPAP-EIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
S P V V ++ L C G ++W D R ++ + +
Sbjct: 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRS----GARPRLASAEMQGSELQVT 60
Query: 75 SRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVS 134
G + + +L + + + Y+C+ +
Sbjct: 61 MHDTRG---------------RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAE 105
Query: 135 KRITVDV 141
++V
Sbjct: 106 ATARLNV 112
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 38.7 bits (90), Expect = 2e-04
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
E + E N TLTC+ E+K + + + Q ++
Sbjct: 104 EMVSKPMIYWECSNATLTCEVLEGTDVELKLYQ-GKEHLR----------SLRQKTMSYQ 152
Query: 75 SRTEMGAYLCIA 86
+ C A
Sbjct: 153 WTNLRAPFKCKA 164
Score = 32.2 bits (73), Expect = 0.031
Identities = 24/166 (14%), Positives = 39/166 (23%), Gaps = 51/166 (30%)
Query: 15 ESTPSSVAVREEFNITLTC-KAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ----- 68
+ + +V N+TLT K + W NQ I +
Sbjct: 3 DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV 62
Query: 69 --------LNITKISRTEMGAYLCIATKIG------------PL---KIFWE---IIF-- 100
L I +S+ + G Y + I+WE
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTC 122
Query: 101 -----------------HMHYGEQLNITKISRTEMGAYLCIATNNV 129
H+ Q ++ + C A N V
Sbjct: 123 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRV 168
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 38.9 bits (90), Expect = 2e-04
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 17 TPSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNIT--- 72
V ++ I L C++ G +P P+I+W + I V +
Sbjct: 124 LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP-TVEAPVVADGVGLYAVAASV 182
Query: 73 KISRTEMGAYLCIAT 87
+ + C
Sbjct: 183 IMRGSSGEGVSCTIR 197
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 38.7 bits (89), Expect = 3e-04
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 17/85 (20%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEG-FPAPE---IKWRREDNQPISINKRKKVH 62
+ + + TLT G P P W + D+QP N
Sbjct: 1 MAFTV---SIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHENN------ 50
Query: 63 MHYGEQLNITKISRTEMGAYLCIAT 87
L + + G+Y
Sbjct: 51 ---TATLTVADATSENAGSYKVTVQ 72
Score = 28.3 bits (62), Expect = 0.78
Identities = 9/80 (11%), Positives = 21/80 (26%), Gaps = 19/80 (23%)
Query: 16 STPSSVAVREEFNITLTCK---AEGFPAPEI-----KWRREDNQPISINKRKKVHMHYGE 67
+ P V + ++ L + G + W + I +
Sbjct: 97 TEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK-GEDVIDTT----------Q 145
Query: 68 QLNITKISRTEMGAYLCIAT 87
+ I + + + G Y
Sbjct: 146 DITIQEFTADKNGVYTVKVW 165
Score = 28.3 bits (62), Expect = 0.83
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 107 QLNITKISRTEMGAYLCIATN---------NVPPSVSKRITVDV 141
L + + + C+A V S S++ +++V
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEV 302
Score = 27.5 bits (60), Expect = 1.4
Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKW---RREDNQPISINKRKKVH 62
T + + +++ + + + G P IK+ + + Q +V
Sbjct: 187 DQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVG 246
Query: 63 MHYGE-------QLNITKISRTEMGAYLCIAT 87
L + + + C+A
Sbjct: 247 EALEGFSITPDGHLFKESATYDDTAKFWCVAK 278
Score = 25.6 bits (55), Expect = 8.0
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 108 LNITKISRTEMGAYLCIATNNV 129
+ I + + + G Y
Sbjct: 147 ITIQEFTADKNGVYTVKVWGES 168
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 38.0 bits (88), Expect = 3e-04
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINK 57
++ + S + + C G FP P + W + +IN
Sbjct: 101 TLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT 153
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 37.8 bits (87), Expect = 4e-04
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 4/45 (8%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAPEIKWRREDN 50
P + V + E C + G P +I W +
Sbjct: 115 AKPQNT---AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG 156
Score = 25.4 bits (55), Expect = 7.7
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 23/91 (25%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAP-----EIKWRREDNQPISINKRKKVHMHYGEQ--- 68
P+ V ++TL C + ++ W R + Y E
Sbjct: 5 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 64
Query: 69 ---------------LNITKISRTEMGAYLC 84
L + + + G+Y C
Sbjct: 65 EFVAARLGAELRDASLRMFGLRVEDEGSYTC 95
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 36.4 bits (83), Expect = 0.001
Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 2/76 (2%)
Query: 13 DTESTPSSVAVREEFNITLTCKAEG-FPAPEIKWRREDNQPISINKRKKVHMHYGEQLNI 71
S + + T+ C +G FP E + +N
Sbjct: 190 TPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ-RLNPTVTYGNDSFSAKAS 248
Query: 72 TKISRTEMGAYLCIAT 87
++ + G
Sbjct: 249 VSVTAEDEGTQRLTCA 264
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 35.2 bits (80), Expect = 0.003
Identities = 16/143 (11%), Positives = 32/143 (22%), Gaps = 19/143 (13%)
Query: 2 SAYKSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPE---IKWRREDNQPISINKR 58
S P + P + VR + C + + W
Sbjct: 109 SMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSH------ 162
Query: 59 KKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEM 118
+ N+ +G + G + + + + ++
Sbjct: 163 TEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDI---------SRNDGSIKLQTVKESDQ 213
Query: 119 GAYLCIATNNVPPSVSKRITVDV 141
G Y C K I + V
Sbjct: 214 GIYTCSIY-VGKLESRKTIVLHV 235
Score = 35.2 bits (80), Expect = 0.004
Identities = 13/128 (10%), Positives = 33/128 (25%), Gaps = 23/128 (17%)
Query: 17 TPSSVAVREEFNITLTCK---AEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITK 73
+ + V ++ + C E + W + + V +Y
Sbjct: 11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLF---SKDKDDASEYVLFYYS------- 60
Query: 74 ISRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSV 133
+ + + H L + + + + G Y C S+
Sbjct: 61 ------NLSVPTGRFQNRSHLVGDT---FHNDGSLLLQDVQKADEGIYTCEIRLK-NESM 110
Query: 134 SKRITVDV 141
+ V++
Sbjct: 111 VMKKPVEL 118
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 33.6 bits (75), Expect = 0.018
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
L C + + W+ N + K M L I +S + G Y C++
Sbjct: 550 TAELKCSQKS-NLARVFWKF-QNGVLKAESPKYGLMGRKN-LLIFNLSEGDSGVYQCLSE 606
Score = 25.5 bits (54), Expect = 9.3
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 108 LNITKISRTEMGAYLCIATNNVPPSVSKRITVDVE 142
L I +S + G Y C++ V ++
Sbjct: 588 LLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHV 622
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 33.1 bits (75), Expect = 0.021
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 18 PSSVAVREEFNITLTC-------KAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLN 70
P S V+ N T C A I W+ ++ I + ++ +
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKT-NHFTIPKEQYTIINRTAS-SVT 67
Query: 71 ITKISRTEMGAYLCIAT 87
T I+ C
Sbjct: 68 FTDIASLN-IQLTCNIL 83
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 32.1 bits (72), Expect = 0.029
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 13 DTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQ-------PISINKRKKVHMHY 65
D++ S V + L C+ + ++W Q + R ++
Sbjct: 40 DSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTST 99
Query: 66 GEQ--LNITKISRTEMGAYLCIAT 87
+ ++I+ ++ + G Y C
Sbjct: 100 PHELSISISNVALADEGEYTCSIF 123
>3g08_A T-cell surface glycoprotein CD1D1; antigen presentation,
glycolipid, NKT cells, cell membrane, glycoprotein,
immune response, immunoglobulin domain; HET: NAG FEE
PLM; 1.60A {Mus musculus} PDB: 1z5l_A* 2gaz_A* 2q7y_A*
2akr_A* 3ma7_C* 3o8x_A* 3o9w_A* 3qux_A* 3quy_A* 3quz_A*
3rzc_A* 3t1f_A* 3ta3_A* 3tvm_A* 3ubx_A* 3ilp_A* 3ilq_C*
3rtq_A* 3rug_A* 3ard_A* ...
Length = 285
Score = 32.2 bits (74), Expect = 0.034
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR-EDNQP 52
K P + S+ + L C GF P P + W R + Q
Sbjct: 185 KQEKPVAWLSSVPSSA-----HGHRQLVCHVSGFYPKPVWVMWMRGDQEQQ 230
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 32.1 bits (72), Expect = 0.041
Identities = 9/76 (11%), Positives = 14/76 (18%), Gaps = 10/76 (13%)
Query: 16 STPSSVAVREEFNITLTC----KAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNI 71
+ L+C E P W P+ +L +
Sbjct: 128 DIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD------PETTRSSELTL 181
Query: 72 TKISRTEMGAYLCIAT 87
T C
Sbjct: 182 TPRPEDHGTNLTCQMK 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.052
Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 53/154 (34%)
Query: 8 PPNILD-TEST-PS----SVAV----REEFNIT---------------LTCKAEGFPAPE 42
+L T+ T P+ A + + I L A+
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI-- 1779
Query: 43 IKWRREDNQPISI-NKRKKVHMHYGEQLNITKISRTEMGA--YLCIATKIGPLKIFWEII 99
E + + R G + + + R E+G Y IA I P ++
Sbjct: 1780 -----ES--LVEVVFYR-------GMTMQVA-VPRDELGRSNYGMIA--INPGRV--AAS 1820
Query: 100 FHMHYGEQLNITKISRTEMGAYLCIATN-NVPPS 132
F + + + ++ + G + I N NV
Sbjct: 1821 FSQEALQYV-VERVGK-RTGWLVEIV-NYNVENQ 1851
Score = 30.4 bits (68), Expect = 0.20
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 20/65 (30%)
Query: 1 MSAYKSVPPNIL---DTEST---PSSVAV-----REEFNITLTCKAEGFPAPEIKWRRED 49
M AY S P L E P++ +E+FN L EGF A D
Sbjct: 1 MDAY-STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA--------D 51
Query: 50 NQPIS 54
++P +
Sbjct: 52 DEPTT 56
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 31.5 bits (72), Expect = 0.076
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR-EDNQP 52
+ V P + + L C GF P P + W R E Q
Sbjct: 301 RQVKPEAWLSSGPSPG-----PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQ 346
Score = 27.7 bits (62), Expect = 1.4
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRREDNQ 51
P I P+ + L C GF P+ E+ + +
Sbjct: 6 RTPKIQVYSRHPAE----NGKSNFLNCYVSGFHPSDIEVDLLKNGER 48
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral
protein complex, immune response, innate immunity,
structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens}
PDB: 1je6_A 1hyr_C 1b3j_A*
Length = 319
Score = 31.1 bits (71), Expect = 0.081
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR 47
++VPP + T S S NIT+TC+A F P + WR+
Sbjct: 181 RTVPPMVNVTCSEVSEG------NITVTCRASSFYPRNITLTWRQ 219
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 30.6 bits (69), Expect = 0.11
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
P + S + + NI+LTC + P +E + ++ + ++
Sbjct: 106 KPFL----SADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANF-- 159
Query: 68 QLNITKISRTEMGAYLC 84
++ + G Y C
Sbjct: 160 --SLGPVDLNVSGIYRC 174
Score = 26.8 bits (59), Expect = 2.3
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE-QLNITKISR 76
S V + + ++ + C+A A + N R+ + + + I +
Sbjct: 16 SSPV-IPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDA 73
Query: 77 TEMGAYLC 84
+ G Y C
Sbjct: 74 NKAGRYQC 81
>3dbx_A CD1-2 antigen; CD1, evolution, antigen-presentation, MHC-fold,
hydrophobic groove, immunoglobulin domain, membrane,
transmembrane; HET: NAG PLM; 2.00A {Gallus gallus}
Length = 289
Score = 30.6 bits (70), Expect = 0.13
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR 47
+ VPP + T V + L C+ F P P + W R
Sbjct: 187 RRVPPMAVVFARTAGQV------QLLLVCRVTSFYPRPIAVTWLR 225
>2h26_A CD1B antigen, T-cell surface glycoprotein CD1B; lipid, endogenous
ligand, phosphatidylcholine, MHC, antigen presentation,
immune system; HET: NAG FUC 6PL 6UL; 1.80A {Homo
sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3t8x_A* 1gzq_A*
1gzp_A* 1uqs_A* 3l9r_A*
Length = 286
Score = 30.6 bits (70), Expect = 0.14
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR-EDNQP 52
+ V P + + L C GF P P + W R E Q
Sbjct: 183 RQVKPEAWLSSGPSPG-----PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQ 228
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.15
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 24 REEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITK 73
REE L E +WR + + + ++ + EQ+ K
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDL-----EEWNQRQSEQVEKNK 135
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 30.3 bits (68), Expect = 0.16
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 11/59 (18%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIA 86
N TLTC+ E+K + + + Q ++ + C A
Sbjct: 107 NATLTCEVLEGTDVELKLYQ-GKEHLR----------SLRQKTMSYQWTNLRAPFKCKA 154
Score = 29.9 bits (67), Expect = 0.19
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISI-NKRKKVHMHYGEQ-------- 68
+ N+T P E+ W+++ ++ + N + + +
Sbjct: 2 SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 69 -LNITKISRTEMGAYLCIATKIGPLKIF 95
L I ++ ++ Y + I F
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMKF 88
>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta
sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A
{Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*
Length = 283
Score = 29.9 bits (68), Expect = 0.20
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRREDNQ 51
+ V P + ++ L C GF P P + W R + +
Sbjct: 183 RQVKPEAWLSHGPSPG-----PGHLQLVCHVSGFYPKPVWVMWMRGEQE 226
>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type
(immunoglobulin-like) domain, histocompatibi antigen,
immune system; HET: 16A; 1.32A {Gallus gallus} PDB:
3p77_A*
Length = 275
Score = 29.9 bits (68), Expect = 0.20
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR 47
+ V P + +TL+C A GF P P I W +
Sbjct: 180 RRVQPEVRVWGKEADG-------ILTLSCHAHGFYPRPITISWMK 217
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 30.0 bits (68), Expect = 0.22
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR-EDNQP 52
+ V P + + L C GF P P + W R E Q
Sbjct: 290 RKVKPEAWLSCGPSPG-----PGRLQLVCHVSGFYPKPVWVMWMRGEQEQR 335
Score = 28.1 bits (63), Expect = 0.98
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 7 VPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRREDNQ 51
P I P+ + L C GF P+ E+ + +
Sbjct: 3 RTPKIQVYSRHPAE----NGKSNFLNCYVSGFHPSDIEVDLLKNGER 45
>1t7v_A Zinc-alpha-2-glycoprotein; MHC class I homolog, PEG, lipid binding
protein; HET: NAG P6G; 1.95A {Homo sapiens} SCOP:
b.1.1.2 d.19.1.1 PDB: 1t7w_A* 1t7x_A* 1t7y_A* 1t7z_A*
1t80_A* 2icn_A* 3es6_A* 1zag_A*
Length = 278
Score = 29.9 bits (68), Expect = 0.24
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR 47
+ PP+++ T L C A F P ++ W R
Sbjct: 183 RQDPPSVVVTSHQAP------GEKKKLKCLAYDFYPGKIDVHWTR 221
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal,
immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP:
b.1.1.2 d.19.1.1
Length = 315
Score = 29.9 bits (68), Expect = 0.25
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRREDNQ 51
K P + S+ + L C GF P P + W R D +
Sbjct: 182 KQEKPVAWLSSVPSSA-----HGHRQLVCHVSGFYPKPVWVMWMRGDQE 225
>1a6z_A HFE; HFE, hereditary hemochromatosis, MHC class I, MHC class I
complex; 2.60A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 1de4_A*
Length = 275
Score = 29.9 bits (68), Expect = 0.25
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR--EDNQ 51
+ VPP + T SS TL C+A + P +KW + +
Sbjct: 182 QQVPPLVKVTHHVTSS-------VTTLRCRALNYYPQNITMKWLKDKQPMD 225
>3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D,
alpha-galactosylceramide, protein complex, cell
membrane, disulfide bond, endosome; HET: NDG BMA NAG
AGH; 2.50A {Homo sapiens} PDB: 2po6_A* 3u0p_A* 3sdx_A*
1zt4_A* 3tzv_C*
Length = 284
Score = 29.8 bits (68), Expect = 0.26
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRREDNQ 51
K V P + + L C GF P P +KW R + +
Sbjct: 184 KQVKPKAWLSRGPSPG-----PGRLLLVCHVSGFYPKPVWVKWMRGEQE 227
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 29.3 bits (65), Expect = 0.31
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 16/92 (17%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW-------------RREDNQPISINKRKKVHM 63
+P S+ VR+ N L C P ++W D + + N R +
Sbjct: 7 SPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATL 66
Query: 64 HYGEQ---LNITKISRTEMGAYLCIATKIGPL 92
+ L+IT + Y C+ G
Sbjct: 67 DKDAKHSTLHITATLLDDTATYFCVVGDRGSA 98
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 29.2 bits (65), Expect = 0.36
Identities = 13/90 (14%), Positives = 21/90 (23%), Gaps = 25/90 (27%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW--------------------RREDNQPISIN 56
+ V V E ++ L CK P + W +
Sbjct: 15 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAE 74
Query: 57 KRKKV-HMHYGEQLNITKISRTEMGAYLCI 85
K H L + ++ Y C
Sbjct: 75 FSKSDSSFH----LRKASVHWSDSAVYFCA 100
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 29.6 bits (65), Expect = 0.36
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 28 NITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIAT 87
L+C E A WR ++N S + L I ++ + G Y C A
Sbjct: 517 RYYLSCPMESRHA-TYSWRHKENVEQSCEPGHQSPNCI---LFIENLTAQQYGHYFCEAQ 572
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 28.7 bits (64), Expect = 0.36
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 31/127 (24%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAP--EIKWRREDNQPISINKRKKVHMHYGEQLNITKI 74
T +++ + +I L C A ++ W ++D + G ++ +
Sbjct: 9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAI------CNADLGWHISPSFK 62
Query: 75 SRTEMGAYLCIATKIGPLKIFWEIIFHMHYGEQLNITKISRTEMGAYLCIATNNVPPSVS 134
R G L L + ++ + G Y CI + +
Sbjct: 63 DRVAPGPGL-----------------------GLTLQSLTVNDTGEYFCIYHTYPDGTYT 99
Query: 135 KRITVDV 141
RI ++V
Sbjct: 100 GRIFLEV 106
>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation,
glycoprote immune response, immunoglobulin domain, MHC
I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC;
2.21A {Human herpesvirus 5}
Length = 281
Score = 29.3 bits (66), Expect = 0.38
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 17 TPSSVAVREEFNITLTCKAEGF-PAP-EIKWRRE 48
V + + C + GF P +I +
Sbjct: 193 VKGGVRNQNDNRAEAFCTSYGFFPGEIQITFIHY 226
>2yf1_A Major histocompatibility complex class I glycoPro haplotype B21;
immune system, BF21, immune response, immunoglobulin
domain; 2.75A {Gallus gallus} PDB: 2yez_A 2yf5_A 2yf6_A
Length = 329
Score = 29.2 bits (66), Expect = 0.39
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR 47
+ P + +TL+C+A GF P P + W +
Sbjct: 199 RRERPEVRVWGKEADG-------ILTLSCRAHGFYPRPIVVSWLK 236
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 29.4 bits (65), Expect = 0.42
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 6/89 (6%)
Query: 2 SAYKSVP-PNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKK 60
S K + T+ P + +IT C ++ + +
Sbjct: 188 SPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVA 247
Query: 61 VHMHYGEQLNITKISRTEMGAYLCIATKI 89
+ + NI+ + + I
Sbjct: 248 IKIR-----NISVSASSGTNVVFTTEDNI 271
>1u58_A MHC-I homolog M144; MCMV, MHC-I homolog, immune system; 1.90A
{Murid herpesvirus 1} SCOP: b.1.1.2 d.19.1.1 PDB: 1pqz_A
Length = 253
Score = 29.1 bits (65), Expect = 0.43
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 28 NITLTCKAEGF-PAP-EIKWRREDNQP 52
+ L C A + PA EI+W ++D
Sbjct: 160 GMRLRCFARDYYPADLEIRWWKDDGGG 186
>3bev_A Major histocompatibility complex class I glycoprotein haplotype
B21; MHC class I, chicken, BF21, 11MER, peptide, bulge,
water cushion, immune response, immunoglobulin domain,
MHC I; 2.10A {Gallus gallus} PDB: 3bew_A
Length = 274
Score = 29.1 bits (66), Expect = 0.44
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR 47
+ P + +TL+C+A GF P P + W +
Sbjct: 178 RRERPEVRVWGKEADG-------ILTLSCRAHGFYPRPIVVSWLK 215
>3it8_D 2L protein; MHC class I homolog, cell membrane, cytokine, disulfide
bond glycoprotein, lipoprotein, membrane, myristate;
HET: NAG; 2.80A {Yaba-like disease virus}
Length = 324
Score = 29.2 bits (65), Expect = 0.47
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 28 NITLTCKAEGF-PAP-EIKWRREDNQ 51
N+TL C F P KW ++
Sbjct: 197 NMTLECTVNSFYPPDVITKWIESEHF 222
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 28.6 bits (64), Expect = 0.56
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW 45
SV + + +TC I W
Sbjct: 8 RTKSVIRQTGSSAEITCDLAEGSTGYIHW 36
>3jvg_A T-cell surface glycoprotein CD1A1 antigen; CD1, T-cell, lipid,
antigen, transmembrane, disulfide bond, immune response,
immunoglobulin domain, MHC I, polymorphism; HET: UNL
NAG; 2.20A {Gallus gallus}
Length = 281
Score = 28.3 bits (64), Expect = 0.66
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR 47
+ VPP + T + L C+ F P P + W R
Sbjct: 179 RQVPPMAVVFARTAGQA------QLLLVCRVTSFYPRPIAVTWLR 217
>3m17_A IGG receptor FCRN large subunit P51; immunoglobulin binding
protein, cell membrane, disulfide BON glycoprotein,
IGG-binding protein, immunoglobulin domain; 2.60A {Homo
sapiens} PDB: 1exu_A 3m1b_A
Length = 267
Score = 28.4 bits (64), Expect = 0.70
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 23 VREEFNITLTCKAEGF-PAP-EIKWRR 47
LTC A F P ++++ R
Sbjct: 188 PSSPGFSVLTCSAFSFYPPELQLRFLR 214
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1;
signal regulatory protein alpha, immunoglobulin
superfamily, phosphoprotein; HET: NAG; 2.49A {Homo
sapiens}
Length = 327
Score = 28.4 bits (63), Expect = 0.72
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 17 TPSSVAVREEFNITLTCKAEGF-PAPEIKWRREDNQP 52
SV+V + L C P I+W R
Sbjct: 9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPA 45
Score = 25.7 bits (56), Expect = 7.5
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 18 PSSVAVREEFNITLTCKAEGF-PAP-EIKWRREDNQPIS 54
+ + ++ TC++ GF P +KW + + +S
Sbjct: 124 GPAARATPQHTVSFTCESHGFSPRDITLKWFK-NGNELS 161
>3fru_A Neonatal FC receptor; complex (immunoglobulin-binding protein),
complex (immunoglo binding protein) complex; HET: NAG
FUL NDG BMA MAN GAL FUC; 2.20A {Rattus norvegicus} SCOP:
b.1.1.2 d.19.1.1 PDB: 1frt_A* 1i1a_A*
Length = 269
Score = 28.4 bits (64), Expect = 0.84
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 28 NITLTCKAEGF-PAP-EIKWRR 47
+ LTC A F P + ++ R
Sbjct: 195 SSVLTCAAFSFYPPELKFRFLR 216
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 28.0 bits (62), Expect = 0.91
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW 45
+P S+ V+E + TC + W
Sbjct: 6 SPQSLHVQEGDSTNFTCSFPSSNFYALHW 34
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.0 bits (62), Expect = 1.0
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGE 67
P++ + P V N+TL+C + R + + KV+ +
Sbjct: 108 KPSLS---AQPGPT-VLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTF-- 161
Query: 68 QLNITKISRTEMGAYLC 84
Q + T G Y C
Sbjct: 162 QADFPLGPATHGGTYRC 178
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 27.6 bits (61), Expect = 1.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW 45
P++++V E N+ L C ++W
Sbjct: 6 IPAALSVPEGENLVLNCSFTDSAIYNLQW 34
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A
{Mus musculus} PDB: 3c60_A
Length = 200
Score = 27.7 bits (61), Expect = 1.3
Identities = 12/98 (12%), Positives = 21/98 (21%), Gaps = 26/98 (26%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW-----------------RREDNQP----ISI 55
V + E + + C P + W +
Sbjct: 6 MQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATY 65
Query: 56 NKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLK 93
+K H L T + + Y C A +
Sbjct: 66 DKGTT-SFH----LQKTSVQEIDSAVYYCAANSGTYQR 98
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG;
2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 27.4 bits (60), Expect = 1.3
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 10/72 (13%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISR 76
P +AV + ++ + C PE+ K+ + Q +S
Sbjct: 8 RPKKLAVEPKGSLEVNCSTTC-NQPEVGGLE--------TSLNKILLDEQAQWKHYLVSN 58
Query: 77 TEM-GAYLCIAT 87
C T
Sbjct: 59 ISHDTVLQCHFT 70
Score = 26.3 bits (57), Expect = 3.5
Identities = 12/87 (13%), Positives = 20/87 (22%), Gaps = 5/87 (5%)
Query: 6 SVPPNILDTESTPSSVAVREEFNITLTCKAEG-FPAP--EIKWRREDNQPISINKRKKVH 62
SV T V + T+ C+ P + R + K
Sbjct: 83 SVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAP 142
Query: 63 MHYGEQLNITKISRTE--MGAYLCIAT 87
+ E + C+A
Sbjct: 143 APQEATATFNSTADREDGHRNFSCLAV 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.3
Identities = 24/149 (16%), Positives = 39/149 (26%), Gaps = 67/149 (44%)
Query: 44 KWRREDNQPISINKRKKVHMHYGEQLN--------ITK--ISRTE--------------- 78
+ E QP + + Y EQ + K +SR +
Sbjct: 97 PIKTEQRQPSMMTRM------YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 79 -------MG--------AYLCIATKIG---PLKIFWEIIFHMHYGEQLNITKISRT---- 116
+ +C++ K+ KIFW LN+ +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-----------LNLKNCNSPETVL 199
Query: 117 EMGAYLC--IATN-NVPPSVSKRITVDVE 142
EM L I N S I + +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Score = 26.4 bits (57), Expect = 4.9
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 36/106 (33%)
Query: 38 FPA----P----EIKWR---REDNQPI--------SINKRKK-----VHMHY----GEQL 69
FP P + W + D + + K+ K + Y +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 70 NITKISRTEMGAYLCIAT----KIGPLK----IFWEIIFHMHYGEQ 107
N + R+ + Y T + P + I H+ E
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 27.3 bits (60), Expect = 1.4
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW 45
+P S++V E +L C + W
Sbjct: 8 SPESLSVPEGGMASLNCTSSDRNFQYFWW 36
>1r3h_A MHC H2-TL-T10-129; class IB MHC, gammadelta T cell ligand, immune
system; 2.50A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB:
1c16_A 1ypz_A*
Length = 260
Score = 27.7 bits (62), Expect = 1.5
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 28 NITLTCKAEGF-PAP-EIKWRRE 48
++TL C A GF PA + W+++
Sbjct: 182 DVTLRCWALGFYPADITLTWQKD 204
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 27.1 bits (60), Expect = 1.5
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW 45
+P S+ V E L C E W
Sbjct: 6 SPQSLTVWEGETAILNCSYEDSTFDYFPW 34
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I
domain, integrin, allosteric mobility, cell adhesi
immune system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 27.3 bits (60), Expect = 1.6
Identities = 7/73 (9%), Positives = 15/73 (20%), Gaps = 11/73 (15%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKIS- 75
P V ++ L C ++ G + ++
Sbjct: 8 QPRVAFVERGGSLWLNCSTNCPRPERGGLE---------TSLRRNGTQRGLRWLARQLVD 58
Query: 76 -RTEMGAYLCIAT 87
R +C
Sbjct: 59 IREPETQPVCFFR 71
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 27.4 bits (61), Expect = 1.9
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 28 NITLTCKAEGF-PAP-EIKWRRE 48
++TL C A GF PA + W+
Sbjct: 343 DVTLRCWALGFYPADITLTWQLN 365
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 27.3 bits (59), Expect = 2.0
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 3/36 (8%)
Query: 17 TPSSVAVREEFNITLTCKAEGF---PAPEIKWRRED 49
+ A E L C F E++W
Sbjct: 299 ATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRG 334
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 27.0 bits (60), Expect = 2.4
Identities = 6/51 (11%), Positives = 12/51 (23%), Gaps = 10/51 (19%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGFPAPEI--KWRR--EDNQ 51
K+ + + L C F P I + + +
Sbjct: 26 KTPQIQVYSRHPPENGK------PNILNCYVTQFHPPHIEIQMLKNGKKIP 70
Score = 25.9 bits (57), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 28 NITLTCKAEGF-PAP-EIKWRRE 48
+TL C A GF PA + W+
Sbjct: 340 KVTLRCWALGFYPADITLTWQLN 362
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 26.1 bits (58), Expect = 2.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 17 TPSSVAVREEFNITLTCKAE 36
T VA+ EE +T+ C
Sbjct: 6 TGGQVALSEEDFLTIHCNYS 25
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 26.5 bits (58), Expect = 2.7
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRRED-------------NQPISINKRKKVHM 63
+P S+ + E N TL C P ++W ++D ++ N R +
Sbjct: 9 SPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL 68
Query: 64 HYGEQ---LNITKISRTEMGAYLCIA 86
+ L+IT ++ +Y+C+
Sbjct: 69 DADTKQSSLHITASQLSDSASYICVV 94
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 26.8 bits (59), Expect = 2.7
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 15 ESTPSSVAVREEFNITLTCKAEGFPAPEIKW 45
E P V + L C + P + W
Sbjct: 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSW 35
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 26.7 bits (59), Expect = 2.7
Identities = 6/46 (13%), Positives = 11/46 (23%), Gaps = 3/46 (6%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPE---IKWRREDNQPISINKRKK 60
P+ + LTC G W + ++
Sbjct: 11 PALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPER 56
Score = 25.6 bits (56), Expect = 6.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEI--KWRREDNQPIS 54
P S + +TLTC A GF ++ +W + +Q +
Sbjct: 114 PPSEELALNELVTLTCLARGFSPKDVLVRWLQ-GSQELP 151
>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_B 1k8i_B*
Length = 211
Score = 26.6 bits (59), Expect = 2.9
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRR 47
++ PP++ ++TP + + L C GF PA I WR+
Sbjct: 93 RTRPPSVQVAKTTPFN----TREPVMLACYVWGFYPAEVTITWRK 133
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 26.5 bits (58), Expect = 3.0
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPE---IKWRREDNQPIS 54
PS + + L C P+ + W RE + +
Sbjct: 20 PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLR 59
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 26.6 bits (58), Expect = 3.1
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 17 TPSSVAVREEFNITLTCKAEGF-PAP-EIKWRREDN 50
V ++E + C++ GF P I W ++
Sbjct: 125 LLDQVGMKENED-KYMCESSGFYPEAINITWEKQTQ 159
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 26.4 bits (59), Expect = 3.3
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 9 PNIL--DTESTPSSVAVREEFN----ITLTCKAEGFPAPEIKWRREDNQP 52
P IL D + IT GF AP++ W + ++P
Sbjct: 92 PAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQR-HEP 140
>1mhc_A MHC class I antigen H2-M3; histocompatibility antigen/peptide,
histocompatibility antig peptide complex; HET: FME NAG;
2.10A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 282
Score = 26.5 bits (59), Expect = 3.8
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 28 NITLTCKAEGF-PAP-EIKWRRE 48
++TL C A GF PA + W+++
Sbjct: 198 DVTLRCWALGFYPADITLTWQKD 220
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 26.1 bits (57), Expect = 4.0
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 17 TPSSVAVREEFNITLTCKAE 36
+P ++++E N+T+ C +
Sbjct: 7 SPQFLSIQEGENLTVYCNSS 26
>1k5n_A Major histocompatibility complex molecule HLA-B*2; MHC(major
histocompatibility complex), HLA(human leukocyte A
immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2
d.19.1.1 PDB: 1jgd_A 1of2_A 1uxw_A 1w0w_A 3b3i_A* 3bp7_A
3czf_A* 3hcv_A* 3d18_A* 2bss_A 2bsr_A 2a83_A 1jge_A
1hsa_A 1uxs_A 1w0v_A 1ogt_A 2bst_A 3b6s_A* 3bp4_A ...
Length = 276
Score = 26.1 bits (58), Expect = 4.2
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 28 NITLTCKAEGF-PAP-EIKWRR 47
TL C A GF PA + W+R
Sbjct: 198 EATLRCWALGFYPAEITLTWQR 219
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 26.0 bits (57), Expect = 4.3
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW 45
P+++ ++L C EG P + W
Sbjct: 7 WPATLVQPVGSPLSLECTVEGTSNPNLYW 35
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 26.0 bits (57), Expect = 4.7
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 28 NITLTCKAEGF-PAP-EIKWRRE 48
+TL C A GF PA + W+
Sbjct: 198 KVTLRCWALGFYPADITLTWQLN 220
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 25.3 bits (56), Expect = 4.9
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 17 TPSSVAVREEFNITLTCKAE 36
+P S+ V E L C E
Sbjct: 5 SPQSLTVWEGETAILNCSYE 24
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D
3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 25.7 bits (56), Expect = 4.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 18 PSSVAVREEFNITLTCKAEGF 38
P+S+ EE + L C
Sbjct: 6 PNSMESNEEEPVHLPCNHSTI 26
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 25.8 bits (57), Expect = 5.0
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 67 EQLNITKISRTEMGAYLC--IATKIGPLKIFW 96
EQ K S L I T+I P K F+
Sbjct: 196 EQEKAAKESLERQQKLLNRKIVTEILPAKKFY 227
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo
sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E
3mfg_B 2ij0_E
Length = 246
Score = 26.0 bits (57), Expect = 5.1
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW 45
PS V + ++ + C++ F A + W
Sbjct: 7 HPSWVISKSGTSVKIECRSLDFQATTMFW 35
>1zs8_A Histocompatibility 2, M region locus 10.5; major histocompatibility
complex, MHC, vomeronasal organ, VN receptors, pheromone
receptors, pepti immune system; HET: NAG; 3.00A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 274
Score = 25.7 bits (57), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 28 NITLTCKAEGF-PAP-EIKWRR 47
N+TL C A GF PA + W+R
Sbjct: 197 NVTLRCWALGFYPADITLTWKR 218
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 25.3 bits (56), Expect = 5.4
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 17 TPSSVAVREEFNITLTCKAEG-FPAPEIKW 45
+ V + L C + + P++ W
Sbjct: 6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFW 35
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor
system; 2.75A {Mus musculus}
Length = 256
Score = 25.8 bits (57), Expect = 5.5
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKWRRED 49
+ V V E ++ L CK P + W +
Sbjct: 9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQY 41
Score = 25.1 bits (55), Expect = 9.6
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 17 TPSSVAVREEFNITLTCKAEG 37
+P + N+TL+C+
Sbjct: 143 SPRNKVTVTGENVTLSCRQTN 163
>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H
domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium
tuberculosis} PDB: 3fsx_A*
Length = 332
Score = 25.8 bits (56), Expect = 5.5
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 9 PNILDTESTPSSVAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQ 68
++++ + V V + ++ G + ISI KR + + G
Sbjct: 197 ASMVEGRISAGVV-VGDGSDVGGGASIMGTLSGG------GTHVISIGKRCLLGANSGLG 249
Query: 69 LNITKISRTEMGAYLCIATKI 89
+++ E G Y+ T++
Sbjct: 250 ISLGDDCVVEAGLYVTAGTRV 270
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 25.0 bits (55), Expect = 5.6
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRREDNQPIS 54
K P I + +E TL C GF P I+ + + + I+
Sbjct: 1 KVSSPKI--QVYSHYPGEYGKE--NTLICYVSGFHPPDISIELLK-NGEVIA 47
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 25.6 bits (56), Expect = 5.7
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW 45
PS V + ++ + C++ F A + W
Sbjct: 30 HPSWVISKSGTSVKIECRSLDFQATTMFW 58
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 25.8 bits (56), Expect = 5.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 12 LDT-ESTPSSVAVREEFNITLTCKAEGFPAPEIKW 45
+D+ T V + E + L C + +P + W
Sbjct: 1 MDSVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFW 35
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 25.6 bits (56), Expect = 6.1
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 18 PSSVAVREEFNITLTCKAEGFPAPEIKW 45
P+ + E + + C + + W
Sbjct: 6 PTEMTATEGAIVQINCTYQTSGFNGLFW 33
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N
2i26_N
Length = 121
Score = 25.0 bits (55), Expect = 6.6
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 17 TPSSVAVREEFNITLTCKAEGF 38
TP + ++T+ C
Sbjct: 6 TPQRITKETGESLTINCVVRDS 27
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 25.6 bits (56), Expect = 6.8
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 8 PPNILDTESTPSSVAVREEFNITLTCKAEGF--PAPEIKW-RREDNQPIS 54
P++ P + +TC PE+K+ D +
Sbjct: 247 GPSVFLFPPKPKDT-LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH 295
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 25.3 bits (55), Expect = 6.9
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 17 TPSSVAVREEFNITLTCKAEGFPAPEIKW 45
P + + L C+ G + W
Sbjct: 10 FPKKMDAELGQKVDLVCEVLGSVSQGCSW 38
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 25.2 bits (54), Expect = 7.8
Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 5/114 (4%)
Query: 21 VAVREEFNITLTCKAEGFPAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMG 80
N L KA A + K + KK + N+ ++ +
Sbjct: 63 YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122
Query: 81 AYLCIATKIGPLKIFW-----EIIFHMHYGEQLNITKISRTEMGAYLCIATNNV 129
+ + + I W I N+ ++ G Y C
Sbjct: 123 GSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKET 176
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 25.6 bits (57), Expect = 7.9
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 9/52 (17%)
Query: 9 PNIL--DTESTPSSVAVREE------FNITLTCKAEGFPAPEIKWRREDNQP 52
P+I D +R E T + +++W ++P
Sbjct: 101 PSIQQSDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVTAKLRWIER-HEP 151
>1yo5_C SAM pointed domain containing ETS transcription factor;
protein-DNA complex, double helix, transcription/DNA
complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Length = 97
Score = 24.6 bits (53), Expect = 8.3
Identities = 8/55 (14%), Positives = 21/55 (38%)
Query: 39 PAPEIKWRREDNQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKIGPLK 93
I+W ++ I +V +G + N ++ ++ + K G ++
Sbjct: 27 YGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIR 81
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, MHC class I molecule
from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 24.7 bits (54), Expect = 8.3
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 5 KSVPPNILDTESTPSSVAVREEFNITLTCKAEGF-PAP-EIKWRREDNQPI 53
+ P + + + + L C A GF P I + D P+
Sbjct: 21 ADLTPKV--QVYSRFPASAGTK--NVLNCFAAGFHPPKISITLMK-DGVPM 66
>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas
aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A
Length = 347
Score = 25.5 bits (55), Expect = 8.5
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 50 NQPISINKRKKVHMHYGEQLNITKISRTEMGAYLCIATKI 89
N IS+ + + + G + + + E G Y+ TK+
Sbjct: 254 NIVISVGEGCLIGANAGIGIPLGDRNIVEAGLYITAGTKV 293
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,132,176
Number of extensions: 113852
Number of successful extensions: 1218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 943
Number of HSP's successfully gapped: 637
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)