RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15394
(523 letters)
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 356 bits (917), Expect = e-122
Identities = 128/244 (52%), Positives = 162/244 (66%), Gaps = 14/244 (5%)
Query: 108 KNRYSDVLAYDHTRVLLSQQDDVPGSDYINANFVDGYKQKNAFISTQGPMQNTVEDFWRM 167
KNRY D+L YDHTRV L DD GSDYINA+++DGY A+I+TQGP+ NTVEDFWRM
Sbjct: 2 KNRYKDILPYDHTRVKLKP-DDDEGSDYINASYIDGYNPPKAYIATQGPLPNTVEDFWRM 60
Query: 168 VWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTL 227
VWEQ+ VI+M T ++E+GR KCAQYWP EG+ +T+GD VT DY + +L L
Sbjct: 61 VWEQKVPVIVMLTELVEKGREKCAQYWPEEEGS-LTYGDITVTLVSEEKLDDYTVRTLKL 119
Query: 228 CNTKTLETRMVAHYQFTAWLDYGVPESALSMLEFLAKARHTQAALLADLGDTWAGHPRGP 287
NT T ETR V H+Q+T W D+GVPES S+L+ L K R +Q P
Sbjct: 120 SNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQ------------QPGSG 167
Query: 288 PIIVHCSAGIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHL 347
PI+VHCSAG+GRTGT +DI + RLE G VD+ TVK +RSQR +Q +QYIF +
Sbjct: 168 PIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLYR 227
Query: 348 ALIE 351
A++E
Sbjct: 228 AILE 231
Score = 122 bits (308), Expect = 6e-32
Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 12/95 (12%)
Query: 404 SMLEFLAKARYTQASLLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICISRLEDS 463
S+L+ L K R P PI+VHCSAG+GRTGT +DI + RLE
Sbjct: 149 SLLDLLRKVR------------KSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAE 196
Query: 464 GTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIE 498
G VD+ TVK +RSQR +Q +QYIF + A++E
Sbjct: 197 GVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAILE 231
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 354 bits (910), Expect = e-120
Identities = 130/273 (47%), Positives = 170/273 (62%), Gaps = 15/273 (5%)
Query: 80 GLCLEYEGF-KIKPPDGSFEVAKRRENLFKNRYSDVLAYDHTRVLLSQQDDVPGSDYINA 138
GL E+E ++KP D S VA EN KNRY DVL YDHTRV L GSDYINA
Sbjct: 1 GLEEEFEKLDRLKPDDESCTVAAFPENRDKNRYKDVLPYDHTRVKLKPPPG-EGSDYINA 59
Query: 139 NFVDGYKQKNAFISTQGPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQYWPGTE 198
+++DG A+I+TQGP+ +TVEDFWRMVWEQ+ VI+M T ++E+GR KCAQYWP E
Sbjct: 60 SYIDGPNGPKAYIATQGPLPSTVEDFWRMVWEQKVTVIVMLTELVEKGREKCAQYWPDEE 119
Query: 199 GTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKTLETRMVAHYQFTAWLDYGVPESALSM 258
G +T+GD VT + V DY + +L + NT ETR V HY +T W D+GVPES S+
Sbjct: 120 GEPLTYGDITVTLKSVEKVDDYTIRTLEVTNTGCSETRTVTHYHYTNWPDHGVPESPESI 179
Query: 259 LEFLAKARHTQAALLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICISRLEDSGT 318
L+ + R +Q+ PI+VHCSAG+GRTGT +DI + +LE
Sbjct: 180 LDLIRAVRKSQS-------------TSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKE 226
Query: 319 VDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIE 351
VD+ VK +RSQR +Q +QYIF + A++E
Sbjct: 227 VDIFEIVKELRSQRPGMVQTEEQYIFLYRAILE 259
Score = 119 bits (300), Expect = 1e-30
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 402 ALSMLEFLAKARYTQASLLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICISRLE 461
S+L+ + R +Q++ PI+VHCSAG+GRTGT +DI + +LE
Sbjct: 176 PESILDLIRAVRKSQSTS-------------TGPIVVHCSAGVGRTGTFIAIDILLQQLE 222
Query: 462 DSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIE 498
VD+ VK +RSQR +Q +QYIF + A++E
Sbjct: 223 AGKEVDIFEIVKELRSQRPGMVQTEEQYIFLYRAILE 259
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 337 bits (866), Expect = e-114
Identities = 120/248 (48%), Positives = 158/248 (63%), Gaps = 16/248 (6%)
Query: 105 NLFKNRYSDVLAYDHTRVLLSQQDDVPGSDYINANFVDGYKQKNAFISTQGPMQNTVEDF 164
NL KNRY D+L YDHTRV L+ SDYINA+++DGY++ AFI+TQGP+ NT+EDF
Sbjct: 1 NLEKNRYKDILPYDHTRVKLTPGGP---SDYINASYIDGYRKPRAFIATQGPLPNTIEDF 57
Query: 165 WRMVWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVT-TECVTSSPDYVLS 223
WRMVWEQ+ I+M T + E+GR KC QYWP E +T+GD VT + DY +
Sbjct: 58 WRMVWEQKVTTIVMLTELEEKGREKCDQYWPEEEEGSLTYGDISVTLVKEEEEEDDYTVR 117
Query: 224 SLTLCNTKTLETRMVAHYQFTAWLDYGVPESALSMLEFLAKARHTQAALLADLGDTWAGH 283
+ L N + ETR V H+ +T W D+GVPES S+L+ + K R +QA
Sbjct: 118 TFELKNGGSEETRTVTHFHYTGWPDHGVPESPKSLLDLIRKVRKSQA------------D 165
Query: 284 PRGPPIIVHCSAGIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYI 343
PR PI+VHCSAG+GRTGT +DI + +LE G VDV VK +RSQR +Q +QYI
Sbjct: 166 PRSGPIVVHCSAGVGRTGTFIAIDILLQQLEAEGEVDVFQIVKELRSQRPGMVQTEEQYI 225
Query: 344 FCHLALIE 351
F + A++E
Sbjct: 226 FLYDAVLE 233
Score = 120 bits (302), Expect = 4e-31
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 402 ALSMLEFLAKARYTQASLLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICISRLE 461
S+L+ + K R PR PI+VHCSAG+GRTGT +DI + +LE
Sbjct: 149 PKSLLDLIRKVR------------KSQADPRSGPIVVHCSAGVGRTGTFIAIDILLQQLE 196
Query: 462 DSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIE 498
G VDV VK +RSQR +Q +QYIF + A++E
Sbjct: 197 AEGEVDVFQIVKELRSQRPGMVQTEEQYIFLYDAVLE 233
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 240 bits (614), Expect = 2e-75
Identities = 111/306 (36%), Positives = 165/306 (53%), Gaps = 13/306 (4%)
Query: 64 LSIAEFVEAV-RSKGRSGLCLEYEGFKIKPPDGSFEVAKRRENLFKNRYSDVLAYDHTRV 122
L AEF+ + +S + E++ + DG+F K+ L NRY D + +DH+RV
Sbjct: 9 LKYAEFLALMEKSDCEEVITREHQKVISEKVDGTFNAEKKNRKL--NRYLDAVCFDHSRV 66
Query: 123 LLSQQDDVPGSDYINANFVDGYKQKNAFISTQGPMQNTVEDFWRMVWEQQTLVIIMTTRV 182
+L + + DYINAN+VDG++ K FI Q P + T DF+RM+W + +I+M +
Sbjct: 67 ILPAERN--RGDYINANYVDGFEYKKKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKK 124
Query: 183 IERGRNKCAQYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKTLETRMVAHYQ 242
E GR KC YW E + G F +TT V + P YV S+L L + T T+ V H+
Sbjct: 125 KENGREKCFPYWSDVEQGSIRFGKFKITTTQVETHPHYVKSTLLLTD-GTSATQTVTHFN 183
Query: 243 FTAWLDYGVPESALSMLEFLAKARHTQAALLADLGDTWAGHPRG--PPIIVHCSAGIGRT 300
FTAW D+ VP++ L F+ + R Q L + GH R PPI+VHC+AG+GRT
Sbjct: 184 FTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQE--SLQIGHNRLQPPPIVVHCNAGLGRT 241
Query: 301 GTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLAL---IEYALSRG 357
C +DI ISR + TV + V IR+QR +S+ + QY FC+ A+ + +++
Sbjct: 242 PCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVNLTVNKV 301
Query: 358 LISAKP 363
P
Sbjct: 302 SKKLIP 307
Score = 81.9 bits (202), Expect = 4e-17
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 405 MLEFLAKARYTQASLLADLGDTWAGHPRG--PPIIVHCSAGIGRTGTLCTLDICISRLED 462
L F+ + R Q L + GH R PPI+VHC+AG+GRT C +DI ISR +
Sbjct: 199 FLNFVLEVRQCQKELAQE--SLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDA 256
Query: 463 SGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLAL---IEYALSRGLISAKP 510
TV + V IR+QR +S+ + QY FC+ A+ + +++ P
Sbjct: 257 CATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVNLTVNKVSKKLIP 307
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 212 bits (540), Expect = 1e-64
Identities = 88/250 (35%), Positives = 142/250 (56%), Gaps = 4/250 (1%)
Query: 104 ENLFKNRYSDVLAYDHTRVLLSQQDDVPGSDYINANFVDGYKQKNAFISTQGPMQNTVED 163
+N+ K RY D +D RV+L +D G D+INA++VDG+ K FI TQ P++ T D
Sbjct: 51 KNMKKCRYPDAPCFDRNRVILKIEDG--GDDFINASYVDGHNAKGRFICTQAPLEETALD 108
Query: 164 FWRMVWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECVTSSPDYVLS 223
FW+ +++ Q VI+M T+++E G+ C YW E K THG+F + T+ + S +Y ++
Sbjct: 109 FWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKKIKSFRNYAVT 168
Query: 224 SLTLCNTKTLETRMVAHYQFTAWLDYGVPESALSMLEFLAKARHTQAALLADLGDTWAGH 283
+L L +T T + + H+ + W G+P L+F+ R L AD+
Sbjct: 169 NLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREAD--LKADVDIKGENI 226
Query: 284 PRGPPIIVHCSAGIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYI 343
+ PPI+VHCSAG+ R G C +DICIS+ + + + V+ +R QR + + + QYI
Sbjct: 227 VKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYI 286
Query: 344 FCHLALIEYA 353
FC+ ++ +A
Sbjct: 287 FCYFIVLIFA 296
Score = 81.6 bits (201), Expect = 4e-17
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 406 LEFLAKARYTQASLLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICISRLEDSGT 465
L+F+ R +A L AD+ + PPI+VHCSAG+ R G C +DICIS+ +
Sbjct: 204 LDFVLAVR--EADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAI 261
Query: 466 VDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIEYA 500
+ + V+ +R QR + + + QYIFC+ ++ +A
Sbjct: 262 IPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFA 296
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 202 bits (514), Expect = 1e-60
Identities = 91/298 (30%), Positives = 144/298 (48%), Gaps = 27/298 (9%)
Query: 83 LEYEGFKIKPPDGSFEVAKRRENLFKNRYSDVLAYDHTRVLLSQQDDVPGSDYINANFVD 142
E+ +KP DG ++ EN KNRY D+ +DH RV+L SDYI+AN++D
Sbjct: 29 DEHHQIILKPFDGLIANFEKPENQPKNRYWDIPCWDHNRVILDSGGG-STSDYIHANWID 87
Query: 143 GYKQKNAFISTQGPMQNTVEDFWRMVWEQQTLVIIMTTRV-IERGRNKCAQYWPGTEGTK 201
G++ FI+TQGP T DFW+ VW++ +I+M T G KC QYW E
Sbjct: 88 GFEDDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGN 147
Query: 202 MTHGDFLVTTECVTSSPDYVLSSLTLCNTKTLETRMVAHYQFTAWLDYGVPESALSMLEF 261
+ DF + T + Y+L+ + + + ++R ++H+Q + W + P ++F
Sbjct: 148 IDMEDFRIETLKTSVRAKYILTLIEITDKILKDSRKISHFQCSEWFEDETPSDHPDFIKF 207
Query: 262 L----------AKARHTQAALLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICIS 311
+ K + + ALL PI+VHCS G+G+TG C +DIC++
Sbjct: 208 IKIIDINRKKSGKLFNPKDALLC-------------PIVVHCSDGVGKTGIFCAVDICLN 254
Query: 312 RLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLA--LIEYALSRGLISAKPDLSG 367
+L + + T ++IR QR I D Y+F ++ Y LS+ K G
Sbjct: 255 QLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYFLSKIKAIDKIKFCG 312
Score = 68.5 bits (167), Expect = 1e-12
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 435 PIIVHCSAGIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHL 494
PI+VHCS G+G+TG C +DIC+++L + + T ++IR QR I D Y+F
Sbjct: 231 PIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFIQP 290
Query: 495 A--LIEYALSRGLISAKPDLSG 514
++ Y LS+ K G
Sbjct: 291 GYEVLHYFLSKIKAIDKIKFCG 312
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 200 bits (510), Expect = 5e-60
Identities = 96/286 (33%), Positives = 149/286 (52%), Gaps = 28/286 (9%)
Query: 92 PPDGSFEVAKRRENLFKNRYSDVLAYDHTRVLLSQQD-----DVPGSD------------ 134
P G+ ++ENL KNR+ D+ +DH+RV+++ + DV SD
Sbjct: 38 PIRGTTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDSDGKKIEVTSEDNA 97
Query: 135 --YINANFVDGYKQKNAFISTQGPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQ 192
YI+ANFVDG+K+ N FI QGP ++T EDF++++ E ++ VI+ T I+ KC +
Sbjct: 98 ENYIHANFVDGFKEANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTD-IDDDDEKCFE 156
Query: 193 YWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKTLETRMVAHYQFTAWLDYGVP 252
W E +++ G F+ + + + L + + + +R + H+ F W D G+P
Sbjct: 157 LWTKEEDSELAFGRFVAKILDIIEELSFTKTRLMITDKISDTSREIHHFWFPDWPDNGIP 216
Query: 253 ESALSMLEFLAKARHTQAALL--ADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICI 310
LE + K QA L+ AD G PI+VHCSAGIGR GT C +D +
Sbjct: 217 TGMAEFLELINKVNEEQAELIKQADNDPQTLG-----PIVVHCSAGIGRAGTFCAIDNAL 271
Query: 311 SRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIEYALSR 356
+LE V + V +IR QR S+ + +QY FC+ AL +YA+
Sbjct: 272 EQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKAL-KYAIIE 316
Score = 79.3 bits (195), Expect = 3e-16
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 435 PIIVHCSAGIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHL 494
PI+VHCSAGIGR GT C +D + +LE V + V +IR QR S+ + +QY FC+
Sbjct: 249 PIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYK 308
Query: 495 ALIEYALSR 503
AL +YA+
Sbjct: 309 AL-KYAIIE 316
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 171 bits (434), Expect = 3e-49
Identities = 82/273 (30%), Positives = 126/273 (46%), Gaps = 33/273 (12%)
Query: 93 PDGSFEVAKRRENLFKNRYSDVLAYDHTRVLLSQQDDVPGSDYINANFVDGYKQKNAFIS 152
S + + N +NRYS+++ Y+HTRV L +DYINA+++ + +I+
Sbjct: 41 SRWSDDTSLSSTNYARNRYSNIVPYEHTRVHLKYGKS--INDYINASYIK--TPRGKYIA 96
Query: 153 TQGPMQNTVEDFWRMVWEQQTL--VIIMTTRVIERGRNKCAQYWPGTEGTKMTHGD--FL 208
TQGP T++DFW+MVW VI+M T + E R KC QYWP + G
Sbjct: 97 TQGPKPETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIK 156
Query: 209 VTTECVTSSPDYVLSSLTLCNTKTLETRMVAHYQFTAWLDYGVPESALSMLEFLAKARHT 268
+ + + + L + + + H+Q+ W+D+ VP S+ E + +
Sbjct: 157 QKKYELFNDNIVNVHNFEL-TSINGPPKKIHHFQYINWVDFNVP-DIRSLTEVIHSLNDS 214
Query: 269 QAALLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICISRLEDSG--------TVD 320
R PIIVHCSAG+GRTGT LDI + D+ T D
Sbjct: 215 --------------PVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQD 260
Query: 321 -VRGTVKRIRSQRAHSIQMRDQYIFCHLALIEY 352
+ V +RSQR +Q + Q+ F + A +E
Sbjct: 261 LIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLEL 293
Score = 73.7 bits (181), Expect = 2e-14
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 430 HPRGPPIIVHCSAGIGRTGTLCTLDICISRLEDSG--------TVD-VRGTVKRIRSQRA 480
R PIIVHCSAG+GRTGT LDI + D+ T D + V +RSQR
Sbjct: 215 PVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRM 274
Query: 481 HSIQMRDQYIFCHLALIEY 499
+Q + Q+ F + A +E
Sbjct: 275 KMVQNKTQFKFLYDAFLEL 293
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 125 bits (317), Expect = 7e-35
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 12/116 (10%)
Query: 237 MVAHYQFTAWLDYGVPESALSMLEFLAKARHTQAALLADLGDTWAGHPRGPPIIVHCSAG 296
V HY +T W D+GVPES S+LE L + P++VHCSAG
Sbjct: 1 TVKHYHYTGWPDHGVPESPDSILELLRAVKKNLNQ-----------SESSGPVVVHCSAG 49
Query: 297 IGRTGTLCTLDICISRLED-SGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIE 351
+GRTGT +DI + +LE +G VD+ TVK +RSQR +Q +QY+F + AL+E
Sbjct: 50 VGRTGTFVAIDILLQQLEAEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALLE 105
Score = 100 bits (252), Expect = 1e-25
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 402 ALSMLEFLAKARYTQASLLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICISRLE 461
S+LE L + P++VHCSAG+GRTGT +DI + +LE
Sbjct: 19 PDSILELLRAVKKNLN-----------QSESSGPVVVHCSAGVGRTGTFVAIDILLQQLE 67
Query: 462 D-SGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIE 498
+G VD+ TVK +RSQR +Q +QY+F + AL+E
Sbjct: 68 AEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALLE 105
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 125 bits (317), Expect = 7e-35
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 12/116 (10%)
Query: 237 MVAHYQFTAWLDYGVPESALSMLEFLAKARHTQAALLADLGDTWAGHPRGPPIIVHCSAG 296
V HY +T W D+GVPES S+LE L + P++VHCSAG
Sbjct: 1 TVKHYHYTGWPDHGVPESPDSILELLRAVKKNLNQ-----------SESSGPVVVHCSAG 49
Query: 297 IGRTGTLCTLDICISRLED-SGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIE 351
+GRTGT +DI + +LE +G VD+ TVK +RSQR +Q +QY+F + AL+E
Sbjct: 50 VGRTGTFVAIDILLQQLEAEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALLE 105
Score = 100 bits (252), Expect = 1e-25
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 402 ALSMLEFLAKARYTQASLLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCTLDICISRLE 461
S+LE L + P++VHCSAG+GRTGT +DI + +LE
Sbjct: 19 PDSILELLRAVKKNLN-----------QSESSGPVVVHCSAGVGRTGTFVAIDILLQQLE 67
Query: 462 D-SGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIE 498
+G VD+ TVK +RSQR +Q +QY+F + AL+E
Sbjct: 68 AEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALLE 105
>gnl|CDD|165107 PHA02740, PHA02740, protein tyrosine phosphatase; Provisional.
Length = 298
Score = 125 bits (316), Expect = 2e-32
Identities = 64/297 (21%), Positives = 126/297 (42%), Gaps = 18/297 (6%)
Query: 60 SSQGLSIAEFVEAVRSKGRSGLCL--EYEGFKIKPPDGSFEVAKRRENLFK--NRYSDVL 115
+ ++ +F+ + K C+ EY + D + + + EN K N +
Sbjct: 5 DAVDINGMDFINFIN-KPDLLSCIIKEYRAIVPEHEDEANKACAQAENKAKDENLALHIT 63
Query: 116 AYDHTRVLLSQQDDVPGSDYINANFVDGYKQKNAFISTQGPMQNTVEDFWRMVWEQQTLV 175
H R+ L + V ++A FVDGY + FI ++ + F + + + + +
Sbjct: 64 RLLHRRIKLFNDEKV-----LDARFVDGYDFEQKFICIINLCEDACDKFLQALSDNKVQI 118
Query: 176 IIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKTLET 235
I++ +R ++ Q+W EG +T F + T + P + L+ L+L +
Sbjct: 119 IVLISRHADK--KCFNQFWSLKEGCVITSDKFQIETLEIIIKPHFNLTLLSLTDKFGQA- 175
Query: 236 RMVAHYQFTAWLDYGVPESALSMLEFLAKARHTQAALLADLGDTWAGHPRGPPIIVHCSA 295
+ ++H+Q+TAW G + ++F A L D PII+ C
Sbjct: 176 QKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIA-----PIIIDCID 230
Query: 296 GIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIEY 352
GI + C DIC + + +G + + +K++R ++ + D Y+FC+ + Y
Sbjct: 231 GISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAY 287
Score = 53.4 bits (128), Expect = 8e-08
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 435 PIIVHCSAGIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHL 494
PII+ C GI + C DIC + + +G + + +K++R ++ + D Y+FC+
Sbjct: 223 PIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCYH 282
Query: 495 ALIEY 499
+ Y
Sbjct: 283 LIAAY 287
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 43.2 bits (102), Expect = 8e-05
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 23/111 (20%)
Query: 246 WLDYGVPESALSMLEFLAKARHTQAALLADLGDTWAGHPRGPPIIVHCSAGIGRTGTLCT 305
LD VP+ LE L K + + +G ++VHC GIGR+GT+
Sbjct: 80 ILDGTVPD-----LEDLDKI----VDFIEEA------LSKGKKVVVHCQGGIGRSGTVIA 124
Query: 306 LDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQYIFCHLALIEYALSR 356
+ S D VKR R A + Q HL +E L R
Sbjct: 125 A-YLMLYGGLS-LADEAIAVKRRRRPGA--VVTEIQ----HLFELEQELFR 167
Score = 40.1 bits (94), Expect = 0.001
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 430 HPRGPPIIVHCSAGIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSIQMRDQY 489
+G ++VHC GIGR+GT+ + S D VKR R A + Q
Sbjct: 102 LSKGKKVVVHCQGGIGRSGTVIAA-YLMLYGGLS-LADEAIAVKRRRRPGA--VVTEIQ- 156
Query: 490 IFCHLALIEYALSR 503
HL +E L R
Sbjct: 157 ---HLFELEQELFR 167
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 35.3 bits (82), Expect = 0.018
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 285 RGPPIIVHCSAGIGRTGTLCT 305
+G ++VHC AGI R+ TL
Sbjct: 70 KGGKVLVHCQAGISRSATLII 90
Score = 35.3 bits (82), Expect = 0.018
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 432 RGPPIIVHCSAGIGRTGTLCT 452
+G ++VHC AGI R+ TL
Sbjct: 70 KGGKVLVHCQAGISRSATLII 90
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 34.2 bits (79), Expect = 0.060
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 283 HPRGPPIIVHCSAGIGRTGTLC 304
+G ++VHC AG+ R+ TL
Sbjct: 75 ESKGGKVLVHCQAGVSRSATLI 96
Score = 34.2 bits (79), Expect = 0.060
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 430 HPRGPPIIVHCSAGIGRTGTLC 451
+G ++VHC AG+ R+ TL
Sbjct: 75 ESKGGKVLVHCQAGVSRSATLI 96
>gnl|CDD|216280 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain. This
domain belongs to a more diverse superfamily, including
pfam01331 and pfam01653.
Length = 195
Score = 34.6 bits (80), Expect = 0.073
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 66 IAEFVEAVRSKGRSGLCLEYEGFKIKPPDGSFEVAKRRENLFK 108
+ EF+E +G EG +K PD +E KR N K
Sbjct: 158 LKEFLEEAIKEGL-------EGVVVKDPDSPYEPGKRSSNWLK 193
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 33.1 bits (76), Expect = 0.17
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 284 PRGPPIIVHCSAGIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSI---QMR 339
I VHC AG+GR L + ++ +E G ++ V +R +R +I Q++
Sbjct: 96 TPPETIAVHCVAGLGRAPIL----VALALVEY-GGMEPLDAVGFVREKRKGAINQTQLQ 149
Score = 33.1 bits (76), Expect = 0.17
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 431 PRGPPIIVHCSAGIGRTGTLCTLDICISRLEDSGTVDVRGTVKRIRSQRAHSI---QMR 486
I VHC AG+GR L + ++ +E G ++ V +R +R +I Q++
Sbjct: 96 TPPETIAVHCVAGLGRAPIL----VALALVEY-GGMEPLDAVGFVREKRKGAINQTQLQ 149
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 30.9 bits (70), Expect = 0.91
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 282 GHPRGPPIIVHCSAGIGRT 300
PR P+++HC AGI R+
Sbjct: 89 EWPRFAPLLIHCYAGISRS 107
Score = 30.9 bits (70), Expect = 0.91
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 429 GHPRGPPIIVHCSAGIGRT 447
PR P+++HC AGI R+
Sbjct: 89 EWPRFAPLLIHCYAGISRS 107
>gnl|CDD|234483 TIGR04150, pseudo_rSAM_GG, pseudo-rSAM protein, GG-Bacteroidales
system. Many peptide-modifying radical SAM enzymes have
two 4Fe4S-binding regions, an N-terminal one recognized
by Pfam radical SAM domain-defining model pfam04055 and
a C-terminal one recognized by TIGR04085. Members of
this protein family occur in cassettes with such a
radical SAM family (TIGR04148) and with a peptide
modification target (TIGR04149). Surprisingly, members
of this family show full-length homology to each other,
with several scoring at least borderline hits to both
pfam04055 and TIGR04085, and yet differ in the
presence/absence of a signature CX(3)CX(2)CX(9)C motif.
Instead, members are best-conserved in the
TIGR04085-like C-terminal region. Therefore, this
protein family is designated a pseudo-radical-SAM
protein, which likely works in partnership with a
TIGR04148 family protein.
Length = 407
Score = 31.5 bits (72), Expect = 1.1
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 65 SIAEFVEAVRSKGRSGLCLEYEGFKIKP----PDGSF--EVAKRRENLFKNRYSDVLAY 117
+ EFV +R K G +E F KP P + +V + +E ++L
Sbjct: 63 EVKEFVSELREKF-MGDIIEVSLFPGKPIIILPILNLQRDVERLKEFKKNLLGENILNN 120
>gnl|CDD|235009 PRK02141, PRK02141, Maf-like protein; Reviewed.
Length = 207
Score = 30.9 bits (70), Expect = 1.2
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 34 VEIEDAVKRVRFSD------DDSLHA----DPTGTSSSQGLSIAEFVEAVRS 75
+ ED V RVRF D L A D G++ S+GL IA ++A+ S
Sbjct: 126 TQSEDVVTRVRFRTLTDAELDAYLRAETPYDVAGSAKSEGLGIA-LLDAIDS 176
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 30.6 bits (70), Expect = 1.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 288 PIIVHCSAGIGRTGTLCTL 306
P++ HC+AG RTG L
Sbjct: 125 PVLFHCTAGKDRTGVAAAL 143
Score = 30.6 bits (70), Expect = 1.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 435 PIIVHCSAGIGRTGTLCTL 453
P++ HC+AG RTG L
Sbjct: 125 PVLFHCTAGKDRTGVAAAL 143
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 30.8 bits (69), Expect = 1.7
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 370 TSCATSRPGGHLGRAPAGAPNHRPLLGRDRAAALSMLEFLAKARYTQ 416
T T PGG LG P G P+ + L + A AL+ L K Y Q
Sbjct: 140 TIAHTHVPGGKLGVPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQ 186
>gnl|CDD|236070 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed.
Length = 275
Score = 29.3 bits (66), Expect = 4.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 84 EYEGFKIKPPDGSFEVAKRRENLFKNRYSDVLAYDHTRVLLS 125
E EG IK + +E+ KR +N K V+ Y +T VL++
Sbjct: 159 ELEGIVIKKANSPYEINKRSDNWLK-----VINYQYTDVLIT 195
>gnl|CDD|143306 cd05898, Ig5_KIRREL3, Fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 protein (also
known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin
(Ig)-like domain of Kirrel (kin of irregular
chiasm-like) 3 protein (also known as Neph2). This
protein has five Ig-like domains, one transmembrane
domain, and a cytoplasmic tail. Included in this group
is mammalian Kirrel (Neph1). These proteins contain
multiple Ig domains, have properties of cell adhesion
molecules, and are important in organ development. Neph1
and 2 may mediate axonal guidance and synapse formation
in certain areas of the CNS. In the kidney, they
participate in the formation of the slit diaphragm.
Length = 98
Score = 28.0 bits (62), Expect = 4.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 215 TSSPDYVLSSLTLCNTKTLETRMVAHYQFTAWLDYGVPESALSMLE 260
TS+ VLS+LT+ N +E HY TAW +G +A+ LE
Sbjct: 56 TSTGSGVLSTLTINNI--MEADFQTHYNCTAWNSFG-SGTAIIQLE 98
>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed.
Length = 637
Score = 29.6 bits (67), Expect = 4.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 310 ISRLEDSGTVDVRGTVKRIRSQR 332
I+ LE+ TV++RGTV IR Q+
Sbjct: 507 IADLEEDDTVEIRGTVVDIRKQK 529
Score = 29.6 bits (67), Expect = 4.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 457 ISRLEDSGTVDVRGTVKRIRSQR 479
I+ LE+ TV++RGTV IR Q+
Sbjct: 507 IADLEEDDTVEIRGTVVDIRKQK 529
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 28.0 bits (63), Expect = 6.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 288 PIIVHCSAGIGRTGTLC 304
++VHC AG+ R+ TL
Sbjct: 83 KVLVHCLAGVSRSATLV 99
Score = 28.0 bits (63), Expect = 6.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 435 PIIVHCSAGIGRTGTLC 451
++VHC AG+ R+ TL
Sbjct: 83 KVLVHCLAGVSRSATLV 99
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 28.8 bits (64), Expect = 9.2
Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 93 PDGSFEVAKRRENLFKNRYSDVLAYDHTRVLLSQQDDVPGSDYINANFVDGYKQKNAFIS 152
P+GS ++ R++N+FK + +A ++ + + +++ +V G ++ ++
Sbjct: 508 PNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGE------VQAVDSVWVYGNSFESFLVA 561
Query: 153 TQGPMQNTVE 162
P Q +E
Sbjct: 562 IANPNQQILE 571
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 28.5 bits (63), Expect = 9.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 351 EYALSRGLISAKPDLSGFQTSCATSRPGGHLGRAPAGAPNHRPLLGRDRAAALSMLE 407
E A GL + K + T + PGG LG P G P+ + LL + A + LE
Sbjct: 122 EVARDFGLKTVKYVVVSASTIASMLVPGGELGVPPPGYPSSKVLLRKQDAYTMKNLE 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,332,688
Number of extensions: 2551117
Number of successful extensions: 2187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2151
Number of HSP's successfully gapped: 55
Length of query: 523
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 422
Effective length of database: 6,457,848
Effective search space: 2725211856
Effective search space used: 2725211856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)