Query         psy15397
Match_columns 289
No_of_seqs    301 out of 1351
Neff          7.5 
Searched_HMMs 46136
Date          Fri Aug 16 19:57:06 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy15397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15397hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG4564|consensus              100.0 1.7E-43 3.7E-48  337.2  11.9  210   12-225   184-421 (473)
  2 KOG4193|consensus              100.0 1.3E-37 2.7E-42  307.7   6.5  198   23-225   363-583 (610)
  3 PF00002 7tm_2:  7 transmembran  99.9 3.5E-29 7.5E-34  223.0   0.0  157   42-202    83-242 (242)
  4 KOG4289|consensus               99.9 9.1E-24   2E-28  215.1   7.2  182   23-218  2206-2399(2531)
  5 KOG4564|consensus               99.2 2.1E-11 4.6E-16  117.4   4.4   41  249-289   224-264 (473)
  6 PF05462 Dicty_CAR:  Slime mold  99.1 1.7E-11 3.6E-16  113.2   3.1  171   46-221    90-268 (303)
  7 PF02101 Ocular_alb:  Ocular al  97.8 9.1E-06   2E-10   76.2   2.7  159   47-206   132-310 (405)
  8 PF01534 Frizzled:  Frizzled/Sm  96.1  0.0032 6.9E-08   59.1   2.0   72   66-137   133-207 (328)
  9 PF00002 7tm_2:  7 transmembran  95.3  0.0046 9.9E-08   54.7   0.0   34  253-286    71-104 (242)
 10 KOG4193|consensus               94.6   0.029 6.2E-07   56.8   3.4   35  253-287   385-419 (610)
 11 PF10320 7TM_GPCR_Srsx:  Serpen  92.0    0.48   1E-05   42.6   6.7   71  147-221   179-257 (257)
 12 KOG4289|consensus               90.9    0.23   5E-06   54.0   3.8   36  250-285  2222-2257(2531)
 13 PF11710 Git3:  G protein-coupl  89.6    0.22 4.8E-06   43.4   2.1   67   74-140   129-199 (201)
 14 PF10328 7TM_GPCR_Srx:  Serpent  85.3     1.2 2.6E-05   40.2   4.4   65  152-220   207-272 (274)
 15 PF10323 7TM_GPCR_Srv:  Serpent  80.1     4.1 8.9E-05   37.2   5.7   22   68-89    119-140 (283)
 16 PF10321 7TM_GPCR_Srt:  Serpent  72.8      12 0.00026   34.9   6.8   34  192-225   276-309 (313)
 17 PHA03087 G protein-coupled che  69.2     8.6 0.00019   35.4   5.0   77  149-225   238-325 (335)
 18 PF02076 STE3:  Pheromone A rec  50.7     3.6 7.8E-05   37.8  -1.0   72   68-140   103-179 (283)
 19 PF10324 7TM_GPCR_Srw:  Serpent  48.5      26 0.00056   32.0   4.3   34  190-223   284-317 (318)
 20 PHA02834 chemokine receptor-li  44.2     8.9 0.00019   35.4   0.5   21  203-223   289-309 (323)
 21 PHA03234 DNA packaging protein  42.8      19 0.00042   33.7   2.5   20  204-223   297-316 (338)
 22 KOG4219|consensus               38.4      42 0.00092   32.5   4.0   76  149-224   255-336 (423)
 23 PF00001 7tm_1:  7 transmembran  36.0     7.1 0.00015   33.1  -1.4   99   68-170   100-217 (257)
 24 PF05462 Dicty_CAR:  Slime mold  35.1      67  0.0015   29.8   4.8   36  250-285    71-106 (303)
 25 PF01534 Frizzled:  Frizzled/Sm  25.2      81  0.0018   29.6   3.6   46  226-274    69-114 (328)
 26 PF10318 7TM_GPCR_Srh:  Serpent  24.0      99  0.0021   28.0   3.9   37  186-222   265-301 (302)
 27 PHA03235 DNA packaging protein  23.9 1.1E+02  0.0023   29.6   4.2   20  203-222   303-322 (409)

No 1  
>KOG4564|consensus
Probab=100.00  E-value=1.7e-43  Score=337.23  Aligned_cols=210  Identities=36%  Similarity=0.639  Sum_probs=184.1

Q ss_pred             hhhhhhhhhHHHHHHhhccccCCC---------------CCchHH-----------HHHHHHHHHHHHHH--HheeeeEe
Q psy15397         12 MSRQQTFPTRRNSVFVSNVEPDSA---------------DSNEFL-----------STSLRSGVVVSAVD--FGSGVTVF   63 (289)
Q Consensus        12 ~~~~~s~~l~~~~~f~~~~~~~~~---------------~~~~v~-----------~~~~~~~~~le~~~--~~l~V~vf   63 (289)
                      |+++.||+|||+++|++|..+..+               .++.++           .++=+.||++||.+  ..+++.+|
T Consensus       184 ~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~  263 (473)
T KOG4564|consen  184 MNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF  263 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec
Confidence            689999999999999999966322               122222           33446888889984  46788999


Q ss_pred             cCCceeEEEeeeccccceeeeeeeeehhcccccccceeccccccceeeeeehhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy15397         64 QDKSYYCIYKVVGWGIPLIMTGLWALVTAYYMREERCWWGYNLTSFFWILEGPRLAAVSLNFLFLLNIIRVLVVKLRQSH  143 (289)
Q Consensus        64 ~~~~~~~~y~l~gWG~P~liV~i~~~~~~~y~~~~~CWl~~~~~~~~~~f~~Pv~~illiN~v~fi~i~~~l~~k~~~~~  143 (289)
                      ++++++++|.++|||+|+++|++|+.++..++|.+ ||..+++.+.+|++.||+++.+++|+++|++|+|++++|+|+++
T Consensus       264 ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d~~-CW~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~KLr~~~  342 (473)
T KOG4564|consen  264 SERRYFWLYLLIGWGVPAVFVVVWAIVRLYLEDTG-CWDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVTKLRASN  342 (473)
T ss_pred             cCccHHHHHHHHhhCCcHHHhhhHHhHheeecccc-ccccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999999999997666665 99999866899999999999999999999999999999999999


Q ss_pred             cchhhHhhhhhhhhhhccccccceeeeccccccccchhhHHHHHHHHHHHHhhhhhhhhhheeeeechHHHHHHHHhhhh
Q psy15397        144 TTELEQLRKGVRAAIVLVPLLGITNVINMTEAPIEHSVWRFLLWSYTTHFLTSFQGFFVAVLYCFFNGEVLLSTATQFDT  223 (289)
Q Consensus       144 ~~~~~~~~~~~r~~l~L~~llG~tW~~g~~~~~~~~~~~~~~v~~ylf~ilnslQG~fIfll~c~~n~~Vr~~~~~~~~~  223 (289)
                      ..+.++++|.+|+++.|+||+|++.+...+ .|.++  ....++.|....++|+|||||+++||++|+|||.|+||+|++
T Consensus       343 ~~~~~~y~K~vKaTLvLIPLfGI~~ilf~~-~P~~~--~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r  419 (473)
T KOG4564|consen  343 ASETDQYRKLVKATLVLIPLFGIHYILFAF-RPDED--TLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSR  419 (473)
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCeeEEEEe-cCchH--HHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHh
Confidence            999999999999999999999999999988 45543  234788999999999999999999999999999999999987


Q ss_pred             cc
Q psy15397        224 AR  225 (289)
Q Consensus       224 ~r  225 (289)
                      .+
T Consensus       420 ~~  421 (473)
T KOG4564|consen  420 WR  421 (473)
T ss_pred             cC
Confidence            54


No 2  
>KOG4193|consensus
Probab=100.00  E-value=1.3e-37  Score=307.72  Aligned_cols=198  Identities=19%  Similarity=0.345  Sum_probs=159.5

Q ss_pred             HHHHhhcccc---CCCCCchH--H----------HHHHHHHHHHHHHHHh-eeeeEecC--CceeEEEeeeccccceeee
Q psy15397         23 NSVFVSNVEP---DSADSNEF--L----------STSLRSGVVVSAVDFG-SGVTVFQD--KSYYCIYKVVGWGIPLIMT   84 (289)
Q Consensus        23 ~~~f~~~~~~---~~~~~~~v--~----------~~~~~~~~~le~~~~~-l~V~vf~~--~~~~~~y~l~gWG~P~liV   84 (289)
                      .++|+++.+|   +..++..+  |          .+|.|.||.+||+|+| +++++|..  +++...|+++|||.|+++|
T Consensus       363 ~~L~l~~l~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~~~~~~~~l~~~~~gwg~Pavvv  442 (610)
T KOG4193|consen  363 LCLFLAELLFLLGIDRTSTSVVLCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFRSRPRRRKLLYSLYGWGVPAVVV  442 (610)
T ss_pred             HHHHHHHHHHhcccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhHHHH
Confidence            5788888866   22222222  2          4577888889999987 57788854  3445666689999999999


Q ss_pred             eeeeehhccc----ccccceeccccccceeeeeehhHHHHHHHHHHHHHHHHHHHHHHhcccCc-chhhHhhhhhhhhhh
Q psy15397         85 GLWALVTAYY----MREERCWWGYNLTSFFWILEGPRLAAVSLNFLFLLNIIRVLVVKLRQSHT-TELEQLRKGVRAAIV  159 (289)
Q Consensus        85 ~i~~~~~~~y----~~~~~CWl~~~~~~~~~~f~~Pv~~illiN~v~fi~i~~~l~~k~~~~~~-~~~~~~~~~~r~~l~  159 (289)
                      +++++++++.    +.+++||+..+ ..++|.|+||+++++++|+++|+.+++++.+++...+. .++.+..+..|.++.
T Consensus       443 ~Isa~~~~~~~~~~~~~~~CWl~~~-~~~~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  521 (610)
T KOG4193|consen  443 GVSALVDPDLEGQYGTPRVCWLDTQ-NGFIWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLENISLIRSALA  521 (610)
T ss_pred             hheeEEeccCccccccCCceEEecC-CceEEEEehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHH
Confidence            9999999854    44578999998 68999999999999999999999999999887655443 233333378899999


Q ss_pred             ccccccceeeeccccccccchhhHHHHHHHHHHHHhhhhhhhhhheeeeechHHHHHHHHhhhhcc
Q psy15397        160 LVPLLGITNVINMTEAPIEHSVWRFLLWSYTTHFLTSFQGFFVAVLYCFFNGEVLLSTATQFDTAR  225 (289)
Q Consensus       160 L~~llG~tW~~g~~~~~~~~~~~~~~v~~ylf~ilnslQG~fIfll~c~~n~~Vr~~~~~~~~~~r  225 (289)
                      |+++||+||+||++++..+    ...++.|+|+|+|++||+|||++||++++++|++++|+.+..+
T Consensus       522 L~~lLGlTW~fgi~s~~~~----~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~  583 (610)
T KOG4193|consen  522 LLFLLGLTWIFGIFSWLPG----TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGR  583 (610)
T ss_pred             HHHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccC
Confidence            9999999999999975322    2478999999999999999999999999999999999987544


No 3  
>PF00002 7tm_2:  7 transmembrane receptor (Secretin family);  InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/).  The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=99.95  E-value=3.5e-29  Score=223.04  Aligned_cols=157  Identities=30%  Similarity=0.541  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhe-eeeEec-CCceeEEEeeeccccceeeeeeeeehhcccccccceeccccccceeeeeehhHHH
Q psy15397         42 STSLRSGVVVSAVDFGS-GVTVFQ-DKSYYCIYKVVGWGIPLIMTGLWALVTAYYMREERCWWGYNLTSFFWILEGPRLA  119 (289)
Q Consensus        42 ~~~~~~~~~le~~~~~l-~V~vf~-~~~~~~~y~l~gWG~P~liV~i~~~~~~~y~~~~~CWl~~~~~~~~~~f~~Pv~~  119 (289)
                      .++.|.||.+||+|+|. +++++. +++++++|+++|||+|+++++++++.+.++|+++.||++++ .+..|+|.+|+++
T Consensus        83 ~la~f~Wm~~~~~~l~~~~~~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~CWl~~~-~~~~~~f~~P~~~  161 (242)
T PF00002_consen   83 FLASFFWMLVEAFYLYRLLVKVFNSSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGNDNCWLSND-WGFIWAFVGPVLI  161 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhheeEEEeecccchhhheeeeeeecCcceeeeeeeeecccccccccccccCC-CceEEEEEecccc
Confidence            45678899999998775 445554 46788999999999999999999999965555566999996 6899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcchhhHhhh-hhhhhhhccccccceeeeccccccccchhhHHHHHHHHHHHHhhhh
Q psy15397        120 AVSLNFLFLLNIIRVLVVKLRQSHTTELEQLRK-GVRAAIVLVPLLGITNVINMTEAPIEHSVWRFLLWSYTTHFLTSFQ  198 (289)
Q Consensus       120 illiN~v~fi~i~~~l~~k~~~~~~~~~~~~~~-~~r~~l~L~~llG~tW~~g~~~~~~~~~~~~~~v~~ylf~ilnslQ  198 (289)
                      ++++|+++++.+++++.++.++++++++++.++ ..|+.+.|+|++|++|++++++. .++  ....+++|+|+++||+|
T Consensus       162 ~l~in~vi~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~llg~~w~~~~~~~-~~~--~~~~~~~~lf~i~nslQ  238 (242)
T PF00002_consen  162 ILLINIVIFILVLRVLVRKSRSSDKSEKKKRRKKILRASLILLPLLGITWLFGILAV-SDS--VDSLVFQYLFAILNSLQ  238 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecccchhheeeEEeehhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHheeeeeee-ccc--chHHHHHHHHHHHHcCc
Confidence            999999999999999988877666666666664 89999999999999999999964 322  12478999999999999


Q ss_pred             hhhh
Q psy15397        199 GFFV  202 (289)
Q Consensus       199 G~fI  202 (289)
                      |++|
T Consensus       239 G~~I  242 (242)
T PF00002_consen  239 GFFI  242 (242)
T ss_dssp             ----
T ss_pred             ceeC
Confidence            9986


No 4  
>KOG4289|consensus
Probab=99.89  E-value=9.1e-24  Score=215.08  Aligned_cols=182  Identities=21%  Similarity=0.292  Sum_probs=148.7

Q ss_pred             HHHHhhccccCCCCC-c-hHH----------HHHHHHHHHHHHHHHheeeeEecCCceeEEEeeeccccceeeeeeeeeh
Q psy15397         23 NSVFVSNVEPDSADS-N-EFL----------STSLRSGVVVSAVDFGSGVTVFQDKSYYCIYKVVGWGIPLIMTGLWALV   90 (289)
Q Consensus        23 ~~~f~~~~~~~~~~~-~-~v~----------~~~~~~~~~le~~~~~l~V~vf~~~~~~~~y~l~gWG~P~liV~i~~~~   90 (289)
                      .+++++++.|-.... + -.|          ..+-|.|.++||.|+|.+..--.+...|+.|+++|||+|++|.+.++++
T Consensus      2206 ~Al~l~~L~Fv~gi~~nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v~tg~mrfy~~vGwgvPa~itglavgl 2285 (2531)
T KOG4289|consen 2206 AALGLAQLVFVLGINQNQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENVDTGPMRFYYLVGWGVPALITGLAVGL 2285 (2531)
T ss_pred             HHHhHHHHHhhhhcccCchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCceeEEEEeecchhhheeeeeecc
Confidence            588999998843221 2 122          3455889999999999766665677899999999999999999999988


Q ss_pred             hcccccccceeccccccceeeeeehhHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhHhhhhhhhhhhccccccceeee
Q psy15397         91 TAYYMREERCWWGYNLTSFFWILEGPRLAAVSLNFLFLLNIIRVLVVKLRQSHTTELEQLRKGVRAAIVLVPLLGITNVI  170 (289)
Q Consensus        91 ~~~y~~~~~CWl~~~~~~~~~~f~~Pv~~illiN~v~fi~i~~~l~~k~~~~~~~~~~~~~~~~r~~l~L~~llG~tW~~  170 (289)
                      +      ++||++.. ..++|.|.||+++++++|+..++...|.-++|+.+.-.  ++..-+.++..+.++.++|.||.+
T Consensus      2286 d------DfCwlS~h-~~LiWsfagPigl~i~ms~~~~~lsa~vSc~~k~~~f~--kK~~v~~lq~~fl~llllsatwl~ 2356 (2531)
T KOG4289|consen 2286 D------DFCWLSPH-DTLIWSFAGPIGLVILMSFYAAALSARVSCHKKYQVFV--KKGNVSVLQHSFLLLLLLSATWLL 2356 (2531)
T ss_pred             c------ceeecccc-hheeeeecccceeeehHHHHHHHHHHHHhhhhhheeee--eccchhhhHHHHHHHHHHHHHHHH
Confidence            7      57999986 78999999999999999999999999887776543322  222334778888999999999999


Q ss_pred             ccccccccchhhHHHHHHHHHHHHhhhhhhhhhheeeeechHHHHHHH
Q psy15397        171 NMTEAPIEHSVWRFLLWSYTTHFLTSFQGFFVAVLYCFFNGEVLLSTA  218 (289)
Q Consensus       171 g~~~~~~~~~~~~~~v~~ylf~ilnslQG~fIfll~c~~n~~Vr~~~~  218 (289)
                      ++++.  +.+   .+.|.|+|+.++.+||.||+++||++|.|||+++|
T Consensus      2357 ~ll~v--n~~---~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2357 GLLAV--NPD---PLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred             HHHhc--CCc---hHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence            99963  333   36789999999999999999999999999999998


No 5  
>KOG4564|consensus
Probab=99.16  E-value=2.1e-11  Score=117.43  Aligned_cols=41  Identities=34%  Similarity=0.833  Sum_probs=38.8

Q ss_pred             ccccchhhHHHHHHHHHHhHHHHHHHHHHHhhhhceecccC
Q psy15397        249 YSQILCEASYVLLEYARTASFMWMFIEGFYLNNMVTGCFFS  289 (289)
Q Consensus       249 ~~~~~Ck~~~~~~~y~~~~n~~W~l~eg~yL~~ll~~~~~~  289 (289)
                      .++++||++.+++|||++|||+|||+||+|||+|++.++++
T Consensus       224 ~~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s  264 (473)
T KOG4564|consen  224 SNPVGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS  264 (473)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc
Confidence            46889999999999999999999999999999999999875


No 6  
>PF05462 Dicty_CAR:  Slime mold cyclic AMP receptor
Probab=99.15  E-value=1.7e-11  Score=113.25  Aligned_cols=171  Identities=16%  Similarity=0.208  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHhe-eeeEecC-CceeEEEeeeccccceeeeeeeeehhccccc-ccceeccccccc-eeeeeehhHHHHH
Q psy15397         46 RSGVVVSAVDFGS-GVTVFQD-KSYYCIYKVVGWGIPLIMTGLWALVTAYYMR-EERCWWGYNLTS-FFWILEGPRLAAV  121 (289)
Q Consensus        46 ~~~~~le~~~~~l-~V~vf~~-~~~~~~y~l~gWG~P~liV~i~~~~~~~y~~-~~~CWl~~~~~~-~~~~f~~Pv~~il  121 (289)
                      +-|-+.=+++.|+ +++..++ ++..++|.+++||+|+++..+....+ .|+. ++.||++++.+. .+..|.+|+.+++
T Consensus        90 ~lWt~~iA~nly~~~~~~~~~~~k~e~~Y~l~~wGiPli~a~i~l~~~-~~g~~G~WCWI~~~~~~~r~~lfY~Pl~ii~  168 (303)
T PF05462_consen   90 FLWTLCIAFNLYLTFVKRYDELEKLEKYYHLVCWGIPLIPAVIPLIGN-DYGPAGNWCWIKPEWDVWRFALFYIPLWIII  168 (303)
T ss_pred             HHHHHHHHHHhhheeEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCCceeecCCCcchHHHHHHHHHHHHH
Confidence            3344444445565 3444433 34558899999999999877655433 3332 357999986333 2346899998888


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCcchhh-Hhhhhhhhhhhccccccceeeecccc---ccccchhhHHHHHHHHHHHHhhh
Q psy15397        122 SLNFLFLLNIIRVLVVKLRQSHTTELE-QLRKGVRAAIVLVPLLGITNVINMTE---APIEHSVWRFLLWSYTTHFLTSF  197 (289)
Q Consensus       122 liN~v~fi~i~~~l~~k~~~~~~~~~~-~~~~~~r~~l~L~~llG~tW~~g~~~---~~~~~~~~~~~v~~ylf~ilnsl  197 (289)
                      .++.++...+.+...+..+....++++ +.+...|... =..++=+.|+++.+-   ...++.   .....++-+.+..+
T Consensus       169 ~~~~ilv~i~~~~~y~~~~~~~sd~~~~~~~~~~kL~~-Yp~ifiicw~fa~INRI~~~~~~~---~~~l~~Lh~~~s~l  244 (303)
T PF05462_consen  169 IISAILVGITMRYIYRVIRNGVSDNKDKHLKYQLKLVN-YPLIFIICWIFATINRIYNFIGKN---PFWLSVLHVGFSPL  244 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHH
Confidence            888776665555443333322222221 2222333222 112234578888762   112221   23567888899999


Q ss_pred             hhhhhhheeeeechHHHHHHHHhh
Q psy15397        198 QGFFVAVLYCFFNGEVLLSTATQF  221 (289)
Q Consensus       198 QG~fIfll~c~~n~~Vr~~~~~~~  221 (289)
                      ||++-++.|.+.|+-.++.+..+.
T Consensus       245 qGf~nsivy~~n~~~~~~~~~~~~  268 (303)
T PF05462_consen  245 QGFFNSIVYGYNNSLMWRYLGSKI  268 (303)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999999977776666666555


No 7  
>PF02101 Ocular_alb:  Ocular albinism type 1 protein;  InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=97.84  E-value=9.1e-06  Score=76.19  Aligned_cols=159  Identities=19%  Similarity=0.240  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHheeeeEecCCceeEEEeeeccccceeeeeeeeehhcccccccceeccccc-cceeeeeehhHHHHHHHHH
Q psy15397         47 SGVVVSAVDFGSGVTVFQDKSYYCIYKVVGWGIPLIMTGLWALVTAYYMREERCWWGYNL-TSFFWILEGPRLAAVSLNF  125 (289)
Q Consensus        47 ~~~~le~~~~~l~V~vf~~~~~~~~y~l~gWG~P~liV~i~~~~~~~y~~~~~CWl~~~~-~~~~~~f~~Pv~~illiN~  125 (289)
                      -|.+.=++..|++++-...+..++.|..++||.|++.++.-..+-+ +-+.+.|=-..++ -+-+..-++|++++++.|=
T Consensus       132 wWtfcYAVDv~Lv~~~~ag~~~~~lYH~~aWgl~~lL~~~Gl~~Ly-~Ps~~~Ce~~l~~alphYvttY~PlllVlvaNP  210 (405)
T PF02101_consen  132 WWTFCYAVDVYLVIRRSAGRSTIWLYHMMAWGLPALLCAEGLAMLY-YPSISRCESGLEHALPHYVTTYIPLLLVLVANP  210 (405)
T ss_pred             HHHHHHHHHHhheeeccCCCcchhHHHHHHHHHHHHHHHhccceee-cCCHHhhhhhhhhcchhHHHHHHHHHHHHHhcc
Confidence            3333334455677766666777899999999999998876554332 1222335211110 1344567899999999999


Q ss_pred             HHHHHHHHHHHHHhcccCc--chhh-Hhhhhhhh-hhhccccccceeeecccc--------c--cccch-----hhHHHH
Q psy15397        126 LFLLNIIRVLVVKLRQSHT--TELE-QLRKGVRA-AIVLVPLLGITNVINMTE--------A--PIEHS-----VWRFLL  186 (289)
Q Consensus       126 v~fi~i~~~l~~k~~~~~~--~~~~-~~~~~~r~-~l~L~~llG~tW~~g~~~--------~--~~~~~-----~~~~~v  186 (289)
                      ++|..+.+.+-+.++.+..  .+++ +.-+.+|. .+....++=+.|+-.++-        .  ..+++     ......
T Consensus       211 iLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~~~~~i~~~sl~~~~~a~~t  290 (405)
T PF02101_consen  211 ILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFYLEMQPDINGGSLKQVRNAALT  290 (405)
T ss_pred             HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhcccccccccccchhhHHHH
Confidence            9999999887665555543  2222 11122222 233444555677665541        0  11110     012357


Q ss_pred             HHHHHHHHhhhhhhhhhhee
Q psy15397        187 WSYTTHFLTSFQGFFVAVLY  206 (289)
Q Consensus       187 ~~ylf~ilnslQG~fIfll~  206 (289)
                      ..|+-.|+|.+|||+-.+.|
T Consensus       291 ~W~IMaIlNPlQgfLnsLay  310 (405)
T PF02101_consen  291 TWFIMAILNPLQGFLNSLAY  310 (405)
T ss_pred             HHHHHHHHhHHHHHHHHHhh
Confidence            78999999999999998887


No 8  
>PF01534 Frizzled:  Frizzled/Smoothened family membrane region;  InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=96.05  E-value=0.0032  Score=59.05  Aligned_cols=72  Identities=19%  Similarity=0.267  Sum_probs=55.3

Q ss_pred             CceeEEEeeeccccceeeeeeeeehhccccc--ccceeccccccc-eeeeeehhHHHHHHHHHHHHHHHHHHHHH
Q psy15397         66 KSYYCIYKVVGWGIPLIMTGLWALVTAYYMR--EERCWWGYNLTS-FFWILEGPRLAAVSLNFLFLLNIIRVLVV  137 (289)
Q Consensus        66 ~~~~~~y~l~gWG~P~liV~i~~~~~~~y~~--~~~CWl~~~~~~-~~~~f~~Pv~~illiN~v~fi~i~~~l~~  137 (289)
                      +++-..+.+++|++|++.+++..+.+.-.+|  ++.|++.++|.. ..+..++|.++.+++...+++.....+.+
T Consensus       133 ~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltGiC~Vg~~~~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~r  207 (328)
T PF01534_consen  133 EKKSSYFHLVAWGIPAVLTIAVLALRKVDGDELTGICFVGNQNPSALRGFVLAPLFIYLLIGTVFLLAGFVSLFR  207 (328)
T ss_pred             hhhcchhhhHHhhhhHHHHHHHHHhcccccccccceeEEeCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3566778999999999988887777664333  367999987543 45667999999999999998887766554


No 9  
>PF00002 7tm_2:  7 transmembrane receptor (Secretin family);  InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/).  The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=95.32  E-value=0.0046  Score=54.73  Aligned_cols=34  Identities=44%  Similarity=0.871  Sum_probs=0.0

Q ss_pred             chhhHHHHHHHHHHhHHHHHHHHHHHhhhhceec
Q psy15397        253 LCEASYVLLEYARTASFMWMFIEGFYLNNMVTGC  286 (289)
Q Consensus       253 ~Ck~~~~~~~y~~~~n~~W~l~eg~yL~~ll~~~  286 (289)
                      .|+...++.||+.+++|+||++||+|||..++..
T Consensus        71 ~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~  104 (242)
T PF00002_consen   71 LCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKV  104 (242)
T ss_dssp             ----------------------------------
T ss_pred             cchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEe
Confidence            3999999999999999999999999999998654


No 10 
>KOG4193|consensus
Probab=94.61  E-value=0.029  Score=56.82  Aligned_cols=35  Identities=40%  Similarity=0.806  Sum_probs=32.5

Q ss_pred             chhhHHHHHHHHHHhHHHHHHHHHHHhhhhceecc
Q psy15397        253 LCEASYVLLEYARTASFMWMFIEGFYLNNMVTGCF  287 (289)
Q Consensus       253 ~Ck~~~~~~~y~~~~n~~W~l~eg~yL~~ll~~~~  287 (289)
                      .|++.-+++||+.++.|+||+.||.+|+.+++..+
T Consensus       385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf  419 (610)
T KOG4193|consen  385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVF  419 (610)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999777654


No 11 
>PF10320 7TM_GPCR_Srsx:  Serpentine type 7TM GPCR chemoreceptor Srsx;  InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/).  The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. 
Probab=91.98  E-value=0.48  Score=42.65  Aligned_cols=71  Identities=13%  Similarity=0.031  Sum_probs=46.8

Q ss_pred             hhHhhhhhhhhhhccccccceeeecccc------ccccchhhHHHHHH--HHHHHHhhhhhhhhhheeeeechHHHHHHH
Q psy15397        147 LEQLRKGVRAAIVLVPLLGITNVINMTE------APIEHSVWRFLLWS--YTTHFLTSFQGFFVAVLYCFFNGEVLLSTA  218 (289)
Q Consensus       147 ~~~~~~~~r~~l~L~~llG~tW~~g~~~------~~~~~~~~~~~v~~--ylf~ilnslQG~fIfll~c~~n~~Vr~~~~  218 (289)
                      .++.+|..|+....+.+.-.+|.+....      ...+++ ....+..  -++..+|.-|=++|.   ..+|+|=|+++|
T Consensus       179 ~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~-~~~~i~~~~~i~v~~~~s~~ffV~---~~~S~EYR~af~  254 (257)
T PF10320_consen  179 SSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGE-TIAIIQMYAGIFVNISYSQNFFVY---YWRSSEYRKAFR  254 (257)
T ss_pred             chhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHHHHHHHHheEE---EEcCHHHHHHHH
Confidence            3455677788888888889999888752      112211 1112333  367777777766654   358999999999


Q ss_pred             Hhh
Q psy15397        219 TQF  221 (289)
Q Consensus       219 ~~~  221 (289)
                      +.|
T Consensus       255 ~~~  257 (257)
T PF10320_consen  255 ELF  257 (257)
T ss_pred             HhC
Confidence            875


No 12 
>KOG4289|consensus
Probab=90.92  E-value=0.23  Score=53.97  Aligned_cols=36  Identities=33%  Similarity=0.772  Sum_probs=33.8

Q ss_pred             cccchhhHHHHHHHHHHhHHHHHHHHHHHhhhhcee
Q psy15397        250 SQILCEASYVLLEYARTASFMWMFIEGFYLNNMVTG  285 (289)
Q Consensus       250 ~~~~Ck~~~~~~~y~~~~n~~W~l~eg~yL~~ll~~  285 (289)
                      .+..|-+..+++||..++.|.|+|+||+|||.+++-
T Consensus      2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e 2257 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTE 2257 (2531)
T ss_pred             CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence            578899999999999999999999999999999864


No 13 
>PF11710 Git3:  G protein-coupled glucose receptor regulating Gpa2;  InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins. 
Probab=89.59  E-value=0.22  Score=43.43  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=45.3

Q ss_pred             eeccccceeeeeeeeeh-h-cccccc-cceecccccc-ceeeeeehhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15397         74 VVGWGIPLIMTGLWALV-T-AYYMRE-ERCWWGYNLT-SFFWILEGPRLAAVSLNFLFLLNIIRVLVVKLR  140 (289)
Q Consensus        74 l~gWG~P~liV~i~~~~-~-~~y~~~-~~CWl~~~~~-~~~~~f~~Pv~~illiN~v~fi~i~~~l~~k~~  140 (289)
                      .+.+++|++...+..+- + +.|++. ..||++.+.. .-++.-.+|.-++....+++++.+...+.++.|
T Consensus       129 ~~~~~~~~~~~~la~i~~~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~  199 (201)
T PF11710_consen  129 VIWILVPLLLASLAFIGLGGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIR  199 (201)
T ss_pred             hHHHHHHHHHHHHHHhccccCcccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            33457777776664433 2 234433 4699998732 245678899999999999999998776655443


No 14 
>PF10328 7TM_GPCR_Srx:  Serpentine type 7TM GPCR chemoreceptor Srx;  InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/).  The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. 
Probab=85.34  E-value=1.2  Score=40.17  Aligned_cols=65  Identities=14%  Similarity=0.296  Sum_probs=33.3

Q ss_pred             hhhhhhhhccccccceeeeccccccc-cchhhHHHHHHHHHHHHhhhhhhhhhheeeeechHHHHHHHHh
Q psy15397        152 KGVRAAIVLVPLLGITNVINMTEAPI-EHSVWRFLLWSYTTHFLTSFQGFFVAVLYCFFNGEVLLSTATQ  220 (289)
Q Consensus       152 ~~~r~~l~L~~llG~tW~~g~~~~~~-~~~~~~~~v~~ylf~ilnslQG~fIfll~c~~n~~Vr~~~~~~  220 (289)
                      +.++.++..-.+.-+.++...+..+. ++....-....+.....+++.|+...    ..|+|+|+.++|.
T Consensus       207 ~f~~Qs~~Q~~~~~i~~~~~~~~~~~~~~~~~~F~~~t~~w~~~h~~DG~i~l----~fN~~~r~~~~~~  272 (274)
T PF10328_consen  207 RFFIQSFIQDLLYLIDLIFYFFIPPLSSNRWWQFFCTTFSWVLVHALDGLIML----IFNSEIRRKIRKK  272 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcceeEe----EEcHHHHHHHHhc
Confidence            33444444444444444444442221 22211112222334556888887654    4589999988865


No 15 
>PF10323 7TM_GPCR_Srv:  Serpentine type 7TM GPCR chemoreceptor Srv;  InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/).  The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae.  This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. 
Probab=80.07  E-value=4.1  Score=37.21  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=17.4

Q ss_pred             eeEEEeeeccccceeeeeeeee
Q psy15397         68 YYCIYKVVGWGIPLIMTGLWAL   89 (289)
Q Consensus        68 ~~~~y~l~gWG~P~liV~i~~~   89 (289)
                      +.++-.++-|..|.++..+...
T Consensus       119 ~~~~i~~i~wi~p~li~~~~~~  140 (283)
T PF10323_consen  119 KIWIIILIQWIPPLLISLPFFF  140 (283)
T ss_pred             chhheeeeeehhhhhheeeeec
Confidence            4567788899999999888554


No 16 
>PF10321 7TM_GPCR_Srt:  Serpentine type 7TM GPCR chemoreceptor Srt;  InterPro: IPR019425  Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. 
Probab=72.80  E-value=12  Score=34.91  Aligned_cols=34  Identities=9%  Similarity=0.074  Sum_probs=24.9

Q ss_pred             HHHhhhhhhhhhheeeeechHHHHHHHHhhhhcc
Q psy15397        192 HFLTSFQGFFVAVLYCFFNGEVLLSTATQFDTAR  225 (289)
Q Consensus       192 ~ilnslQG~fIfll~c~~n~~Vr~~~~~~~~~~r  225 (289)
                      .+.=.+.-=...+.|-.+||.+|++.+|.+..++
T Consensus       276 ~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~  309 (313)
T PF10321_consen  276 QISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKK  309 (313)
T ss_pred             HHHHhccCCccceEEEEECHHHHHHHHHHHcccc
Confidence            3444445456677788899999999999887544


No 17 
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=69.23  E-value=8.6  Score=35.39  Aligned_cols=77  Identities=10%  Similarity=0.037  Sum_probs=42.1

Q ss_pred             Hhhhhhhhhhhccccccceeeecccc---------cccc--chhhHHHHHHHHHHHHhhhhhhhhhheeeeechHHHHHH
Q psy15397        149 QLRKGVRAAIVLVPLLGITNVINMTE---------APIE--HSVWRFLLWSYTTHFLTSFQGFFVAVLYCFFNGEVLLST  217 (289)
Q Consensus       149 ~~~~~~r~~l~L~~llG~tW~~g~~~---------~~~~--~~~~~~~v~~ylf~ilnslQG~fIfll~c~~n~~Vr~~~  217 (289)
                      +.+|..|....+..++-+.|.-..+.         ...+  ...........+...+-.+-+..=-++|++.+++.|++.
T Consensus       238 ~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~  317 (335)
T PHA03087        238 KNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHK  317 (335)
T ss_pred             hcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHH
Confidence            34566777777777777777443220         0011  000001111122223333345566778999999999999


Q ss_pred             HHhhhhcc
Q psy15397        218 ATQFDTAR  225 (289)
Q Consensus       218 ~~~~~~~r  225 (289)
                      |+.++..+
T Consensus       318 ~~~~~~~~  325 (335)
T PHA03087        318 KKSLKLMF  325 (335)
T ss_pred             HHHHHHHh
Confidence            98876543


No 18 
>PF02076 STE3:  Pheromone A receptor;  InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/).  Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=50.70  E-value=3.6  Score=37.82  Aligned_cols=72  Identities=11%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             eeEEEeeeccccceeeeeeeeehhcc----cccccceecccccc-ceeeeeehhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15397         68 YYCIYKVVGWGIPLIMTGLWALVTAY----YMREERCWWGYNLT-SFFWILEGPRLAAVSLNFLFLLNIIRVLVVKLR  140 (289)
Q Consensus        68 ~~~~y~l~gWG~P~liV~i~~~~~~~----y~~~~~CWl~~~~~-~~~~~f~~Pv~~illiN~v~fi~i~~~l~~k~~  140 (289)
                      +...=.++|+|+|.+.++....+...    +++.+ |.-...++ +.+-.+.+|-.+.-++..+.-+.+++...++.+
T Consensus       103 ~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~G-C~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt~~~f~~rr~  179 (283)
T PF02076_consen  103 RIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVG-CYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILTLRRFIRRRK  179 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccceeEecccC-CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445788999999999998887653    34556 97765533 344556788888888899888888887765433


No 19 
>PF10324 7TM_GPCR_Srw:  Serpentine type 7TM GPCR chemoreceptor Srw;  InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/).  The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz []. 
Probab=48.49  E-value=26  Score=32.03  Aligned_cols=34  Identities=12%  Similarity=0.262  Sum_probs=23.7

Q ss_pred             HHHHHhhhhhhhhhheeeeechHHHHHHHHhhhh
Q psy15397        190 TTHFLTSFQGFFVAVLYCFFNGEVLLSTATQFDT  223 (289)
Q Consensus       190 lf~ilnslQG~fIfll~c~~n~~Vr~~~~~~~~~  223 (289)
                      ++..+..+-...=++++|.++.|=|++.|+-+++
T Consensus       284 ~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~  317 (318)
T PF10324_consen  284 IFNILITINSSIHFFICCFMSSQYRKTVKKLFGC  317 (318)
T ss_pred             HHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhcc
Confidence            3333334445566778889999999999876653


No 20 
>PHA02834 chemokine receptor-like protein; Provisional
Probab=44.15  E-value=8.9  Score=35.43  Aligned_cols=21  Identities=14%  Similarity=0.274  Sum_probs=17.0

Q ss_pred             hheeeeechHHHHHHHHhhhh
Q psy15397        203 AVLYCFFNGEVLLSTATQFDT  223 (289)
Q Consensus       203 fll~c~~n~~Vr~~~~~~~~~  223 (289)
                      =++|++.|++.|+++++.+++
T Consensus       289 PiIY~~~~~~fR~~~~~~~~~  309 (323)
T PHA02834        289 PIIYAFVGKNFKKVFKNMFCR  309 (323)
T ss_pred             HHHHHHhcHHHHHHHHHHHHh
Confidence            367888999999999887644


No 21 
>PHA03234 DNA packaging protein UL33; Provisional
Probab=42.82  E-value=19  Score=33.68  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=15.4

Q ss_pred             heeeeechHHHHHHHHhhhh
Q psy15397        204 VLYCFFNGEVLLSTATQFDT  223 (289)
Q Consensus       204 ll~c~~n~~Vr~~~~~~~~~  223 (289)
                      ++|++.+++.|+++++.+++
T Consensus       297 iIY~f~~~~FR~~~~~~~~~  316 (338)
T PHA03234        297 LVYAFTGGDFRLRFTACFQD  316 (338)
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            56788899999888876544


No 22 
>KOG4219|consensus
Probab=38.44  E-value=42  Score=32.46  Aligned_cols=76  Identities=17%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             Hhhhhhhhhhhccccccceeeeccccccc---cchhhHHHHHH--HHHHH-HhhhhhhhhhheeeeechHHHHHHHHhhh
Q psy15397        149 QLRKGVRAAIVLVPLLGITNVINMTEAPI---EHSVWRFLLWS--YTTHF-LTSFQGFFVAVLYCFFNGEVLLSTATQFD  222 (289)
Q Consensus       149 ~~~~~~r~~l~L~~llG~tW~~g~~~~~~---~~~~~~~~v~~--ylf~i-lnslQG~fIfll~c~~n~~Vr~~~~~~~~  222 (289)
                      ..+|..|..++....+++.|.=--+....   ..+.......+  |+..- +...---+==+.||++|++-|..+++.++
T Consensus       255 ak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr  334 (423)
T KOG4219|consen  255 AKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFR  334 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhh
Confidence            35667788888888899999632211000   01100011111  11111 01111112235789999999999999887


Q ss_pred             hc
Q psy15397        223 TA  224 (289)
Q Consensus       223 ~~  224 (289)
                      .+
T Consensus       335 ~c  336 (423)
T KOG4219|consen  335 WC  336 (423)
T ss_pred             ee
Confidence            65


No 23 
>PF00001 7tm_1:  7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature;  InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/).  The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=35.98  E-value=7.1  Score=33.10  Aligned_cols=99  Identities=11%  Similarity=0.146  Sum_probs=48.3

Q ss_pred             eeEEEeeeccccceeeeeeeeehhcc---ccc-ccceeccccccc--------eeeeeehhHHHHHHHHHHHHHHHHHHH
Q psy15397         68 YYCIYKVVGWGIPLIMTGLWALVTAY---YMR-EERCWWGYNLTS--------FFWILEGPRLAAVSLNFLFLLNIIRVL  135 (289)
Q Consensus        68 ~~~~y~l~gWG~P~liV~i~~~~~~~---y~~-~~~CWl~~~~~~--------~~~~f~~Pv~~illiN~v~fi~i~~~l  135 (289)
                      +.....+..|.+++++..........   .++ ...|+...++..        ....+..|+.+++..+..++...    
T Consensus       100 ~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~----  175 (257)
T PF00001_consen  100 RARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILPLIIILICYIRILRKL----  175 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH----
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccc----
Confidence            34455667788888766655433221   111 346999876331        11224556666666554443332    


Q ss_pred             HHHhcccC-------cchhhHhhhhhhhhhhccccccceeee
Q psy15397        136 VVKLRQSH-------TTELEQLRKGVRAAIVLVPLLGITNVI  170 (289)
Q Consensus       136 ~~k~~~~~-------~~~~~~~~~~~r~~l~L~~llG~tW~~  170 (289)
                      .++.++.+       +.+.++.++..|..+.+...+-+.|.-
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P  217 (257)
T PF00001_consen  176 RRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLP  217 (257)
T ss_dssp             HHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCc
Confidence            22222111       122233445556555555555555643


No 24 
>PF05462 Dicty_CAR:  Slime mold cyclic AMP receptor
Probab=35.07  E-value=67  Score=29.80  Aligned_cols=36  Identities=25%  Similarity=0.498  Sum_probs=32.0

Q ss_pred             cccchhhHHHHHHHHHHhHHHHHHHHHHHhhhhcee
Q psy15397        250 SQILCEASYVLLEYARTASFMWMFIEGFYLNNMVTG  285 (289)
Q Consensus       250 ~~~~Ck~~~~~~~y~~~~n~~W~l~eg~yL~~ll~~  285 (289)
                      ++..|...-.+.|++..+.+.|.++=++.||..++.
T Consensus        71 ~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~  106 (303)
T PF05462_consen   71 NSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVK  106 (303)
T ss_pred             CCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEE
Confidence            467899999999999999999999999999977653


No 25 
>PF01534 Frizzled:  Frizzled/Smoothened family membrane region;  InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=25.17  E-value=81  Score=29.65  Aligned_cols=46  Identities=24%  Similarity=0.480  Sum_probs=30.5

Q ss_pred             ccccccCCCchhhhhhhcCCCCcccccchhhHHHHHHHHHHhHHHHHHH
Q psy15397        226 RTAETCDQTENQYMILRRGSLDDYSQILCEASYVLLEYARTASFMWMFI  274 (289)
Q Consensus       226 ~~~~~~~~~~~~~sl~~r~~~~~~~~~~Ck~~~~~~~y~~~~n~~W~l~  274 (289)
                      +..-.|++.+.......+++   .++..|-+.-++..|+.+|...|+.+
T Consensus        69 ~~~i~C~~~~~~~~~~~~~~---~~~~~C~~~F~l~Yyf~mAa~~WWvi  114 (328)
T PF01534_consen   69 RESIACRSQDGTERILVQDG---LENSSCTVVFLLLYYFGMAASLWWVI  114 (328)
T ss_pred             CCCcCCCcCCCCceeEeecC---CCCCchhhHHHHHHHHHhHHHHHHHH
Confidence            34456765222222223222   23578999999999999999999877


No 26 
>PF10318 7TM_GPCR_Srh:  Serpentine type 7TM GPCR chemoreceptor Srh;  InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/).  The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae.  Srh is part of the Str superfamily of chemoreceptors []. 
Probab=23.95  E-value=99  Score=27.96  Aligned_cols=37  Identities=8%  Similarity=0.120  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhhhhhhhhhheeeeechHHHHHHHHhhh
Q psy15397        186 LWSYTTHFLTSFQGFFVAVLYCFFNGEVLLSTATQFD  222 (289)
Q Consensus       186 v~~ylf~ilnslQG~fIfll~c~~n~~Vr~~~~~~~~  222 (289)
                      ...++..++-+.+|..=-+...+.||.-|+..++.++
T Consensus       265 ~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~  301 (302)
T PF10318_consen  265 ALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFR  301 (302)
T ss_pred             ccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhc
Confidence            3456777888999999988888899999999987654


No 27 
>PHA03235 DNA packaging protein UL33; Provisional
Probab=23.88  E-value=1.1e+02  Score=29.61  Aligned_cols=20  Identities=25%  Similarity=0.526  Sum_probs=15.8

Q ss_pred             hheeeeechHHHHHHHHhhh
Q psy15397        203 AVLYCFFNGEVLLSTATQFD  222 (289)
Q Consensus       203 fll~c~~n~~Vr~~~~~~~~  222 (289)
                      =++|++.+++.|+..++.++
T Consensus       303 PiIY~~~~~~FRk~~~~~l~  322 (409)
T PHA03235        303 PILYAFLGNDFLKRFRQCFR  322 (409)
T ss_pred             HHHHHHhhHHHHHHHHHHHh
Confidence            36888899999999876653


Done!