RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15397
         (289 letters)



>gnl|CDD|215647 pfam00002, 7tm_2, 7 transmembrane receptor (Secretin family).  This
           family is known as Family B, the secretin-receptor
           family or family 2 of the G-protein-coupled receptors
           (GCPRs).They have been described in many animal species,
           but not in plants, fungi or prokaryotes. Three distinct
           sub-families are recognised. Subfamily B1 contains
           classical hormone receptors, such as receptors for
           secretin and glucagon, that are all involved in
           cAMP-mediated signalling pathways. Subfamily B2 contains
           receptors with long extracellular N-termini, such as the
           leukocyte cell-surface antigen CD97 ;
           calcium-independent receptors for latrotoxin, and
           brain-specific angiogenesis inhibitors amongst others.
           Subfamily B3 includes Methuselah and other Drosophila
           proteins. Other than the typical seven-transmembrane
           region, characteristic structural features include an
           amino-terminal extracellular domain involved in ligand
           binding, and an intracellular loop (IC3) required for
           specific G-protein coupling.
          Length = 239

 Score =  109 bits (275), Expect = 9e-29
 Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)

Query: 60  VTVFQDKSYYCIYKVVGWGIPLIMTGLWALVTAYYMREERCWWGYNLTSFFWILEGPRLA 119
              F ++ Y   Y ++GWG+P ++ G+WA+V   Y     CW   N   F+WI +GP L 
Sbjct: 102 EVFFSERKYLWWYLLIGWGVPAVVVGIWAIVRKGYGNP-GCWLSNN-GGFWWIFKGPVLL 159

Query: 120 AVSLNFLFLLNIIRVLVVKLRQSHTTELEQLRKG-VRAAIVLVPLLGITNVINMTEAPIE 178
            + +NF+F +NI+R+LV KLR     E +Q RK   ++ +VL+PLLGIT ++    AP +
Sbjct: 160 VILVNFIFFINILRILVQKLRSPDMGETDQYRKRLAKSTLVLLPLLGITWIL-FLFAPED 218

Query: 179 H-SVWRFLLWSYTTHFLTSFQGFFV 202
             S+    L+      L SFQGFFV
Sbjct: 219 DVSIVFLYLF----AILNSFQGFFV 239



 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 250 SQILCEASYVLLEYARTASFMWMFIEGFYLNNMVTGCFFS 289
           S ++C+   V L Y   A+F WM +EG YL  ++   FFS
Sbjct: 67  SDVVCKVVAVFLHYFFLANFFWMLVEGLYLYTLLVEVFFS 106


>gnl|CDD|165792 PLN00413, PLN00413, triacylglycerol lipase.
          Length = 479

 Score = 29.2 bits (65), Expect = 3.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 65  DKSYYCIYKVVGWGIPLIMTGLWALVTAYYMREERCWWGYNLTSFFWILEGPRLAAV 121
           +K+Y+ I+    W IP I+  LW L+ ++ +    CW G       W L   RL A+
Sbjct: 393 NKNYFNIF----WVIPKIINALWELIRSFII---PCWKGGEFRE-GWFLRCFRLVAL 441


>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
          Length = 788

 Score = 28.6 bits (64), Expect = 4.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 10  YMMSRQQTFPTRRNSV--FVSNVEPDSADSNEFLSTSLRSGVVVSAVDFGSGVT 61
           Y++S +   P +  +   F S+  P+S D N+F       GVVVS  D  + V 
Sbjct: 77  YIVSSKIKTPAQLEAAFSFFSSTGPESFDLNKFEEAC-GVGVVVSPEDIEAAVN 129


>gnl|CDD|236676 PRK10376, PRK10376, putative oxidoreductase; Provisional.
          Length = 290

 Score = 27.6 bits (62), Expect = 8.1
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)

Query: 217 TATQFDTARRTAE-TCDQTENQYMILRRGSLDD 248
           T TQ   AR+ AE  C Q  N Y +  R   DD
Sbjct: 168 TPTQVAEARKIAEIVCVQ--NHYNLAHRA--DD 196


>gnl|CDD|222202 pfam13530, SCP2_2, Sterol carrier protein domain. 
          Length = 217

 Score = 27.2 bits (61), Expect = 9.0
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 16/83 (19%)

Query: 69  YCIYKVVGWGIPLIMT-------------GLWALVTAYY-MREERCWWGYNLTSFFWILE 114
           Y IY++                        LW  + ++  M +             ++L 
Sbjct: 39  YVIYRIEDDWDENTFEVQELIALTPEARRALWRFLCSHDSMVDTVSGQRPVDDPLPFLLP 98

Query: 115 GPRLAAVSLNFLFL--LNIIRVL 135
            PR A     +L L  +++   L
Sbjct: 99  DPRAAVEVKPYLMLRIVDVPAAL 121


>gnl|CDD|217920 pfam04137, ERO1, Endoplasmic Reticulum Oxidoreductin 1 (ERO1).
           Members of this family are required for the formation of
           disulphide bonds in the ER.
          Length = 348

 Score = 27.3 bits (61), Expect = 9.7
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 6/41 (14%)

Query: 102 WGYNLTSFFW-ILEGP-RLAAVSLNFLFLLNIIRVLVVKLR 140
           WG NL  FF  +   P RL     N  F   ++   + KL+
Sbjct: 184 WGPNLELFFERVGNHPDRLR----NLYFTYALVLRALAKLK 220


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0764    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,536,924
Number of extensions: 1383668
Number of successful extensions: 1599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1590
Number of HSP's successfully gapped: 36
Length of query: 289
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 193
Effective length of database: 6,679,618
Effective search space: 1289166274
Effective search space used: 1289166274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)