RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15397
         (289 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 44/248 (17%), Positives = 81/248 (32%), Gaps = 64/248 (25%)

Query: 31  EPDSADSNEFLSTSLRSGVV-VSAVDF---GSGVTVFQD-KSYYCIYK-VVGWGIPLIMT 84
           + +SA     L  ++  G   + A+ F   G+    F++ +  Y  Y  +VG    LI  
Sbjct: 140 KSNSA-----LFRAVGEGNAQLVAI-FGGQGNTDDYFEELRDLYQTYHVLVG---DLIKF 190

Query: 85  G---LWALVTAYYMREERCWWGYNLTSFFWILEGP---------RLAAVSLNFLFLLNII 132
               L  L+      E+    G N+    W LE P             +S   + ++ + 
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILE--W-LENPSNTPDKDYLLSIPISCPLIGVIQLA 247

Query: 133 RVLVVKLRQSHTTELEQLRKGVRAAIVLVPLLGITNVINMTEAPIEHSVWRFLLWSYTTH 192
             +V   +    T   +LR  ++ A           ++  T   I  +            
Sbjct: 248 HYVVT-AKLLGFTP-GELRSYLKGATGHS-----QGLV--TAVAIAET------------ 286

Query: 193 FLTSFQGFFVAVL----YCFFNG-EVLLSTATQFDTARRTAETCDQTENQ--YMI----L 241
              S++ FFV+V       FF G     +            ++ +  E     M+    L
Sbjct: 287 --DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344

Query: 242 RRGSLDDY 249
            +  + DY
Sbjct: 345 TQEQVQDY 352



 Score = 33.9 bits (77), Expect = 0.063
 Identities = 41/222 (18%), Positives = 71/222 (31%), Gaps = 72/222 (32%)

Query: 15  QQTFPTRRNSVFVSNVEPDSADSNE-----FLS-TSLRSGVVVSAVDFGSGVTVFQDKSY 68
            + +P   N+    ++  DS ++NE      LS ++L    V   V+  +   +   K  
Sbjct: 311 YEAYP---NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KTNSHLPAGKQ- 365

Query: 69  YCIYKVVGWGIPLI-------MTG----LWALVTAYYMREERCWWGYNLTSFFWILEGPR 117
             +       I L+       ++G    L+ L     +R+ +   G + +    I    R
Sbjct: 366 --VE------ISLVNGAKNLVVSGPPQSLYGLNLT--LRKAKAPSGLDQSR---IPFSER 412

Query: 118 LAAVSLNFL-----F---LLN-----IIRVLV---VKLRQS-------HTTELEQLRKGV 154
               S  FL     F   LL      I + LV   V             T +   LR  +
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV-L 471

Query: 155 RAAIV--LVPLLGITNVINMTEAPIEHSVWRFLLWSYTTHFL 194
             +I   +V  +           P++   W        TH L
Sbjct: 472 SGSISERIVDCI--------IRLPVK---WETTTQFKATHIL 502



 Score = 29.2 bits (65), Expect = 2.2
 Identities = 19/146 (13%), Positives = 37/146 (25%), Gaps = 51/146 (34%)

Query: 155  RAAIVLVPLLG--ITNVINMTEAPIEHSVWRFLLWSYTTHFLTSFQGFFVAVLYCFFNGE 212
            RA        G  I +++     P+  ++          HF    +G  +   Y     E
Sbjct: 1648 RADNHFKDTYGFSILDIV--INNPVNLTI----------HF-GGEKGKRIRENYSAMIFE 1694

Query: 213  VLLSTATQ----FDTARRT---------AETCDQTEN-Q-------YMILR----RG--- 244
             ++    +    F                     T+  Q                +G   
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754

Query: 245  --------SLDDYSQILCEASYVLLE 262
                    SL +Y+ +   A  + +E
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIE 1780


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.4 bits (70), Expect = 0.40
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 25/85 (29%)

Query: 89  LVTAYYMREERCWW--------GYNLTSFFW-I---LEGPRLA-------AVSLNFLFLL 129
           +V  Y + +              Y    F+  I   L+             V L+F FL 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQY----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 130 NIIR--VLVVKLRQSHTTELEQLRK 152
             IR          S    L+QL+ 
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKF 529


>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
           NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
          Length = 1245

 Score = 27.9 bits (61), Expect = 4.4
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 19  PTRRNSVFVSNVEPDSADSNEFLSTSLRSGVVVSAVDFGSGVTVFQDKS 67
            T  + + + N    S D N+F+   L  G +    D G+G  + +  S
Sbjct: 868 TTSLDGLILYN----SGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSS 912


>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
          binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
          Length = 195

 Score = 27.6 bits (61), Expect = 4.6
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 26 FVSNVEPDSADSNEFLSTSLRSGVVVSAVDFGSGVTVFQDKSYYC 70
          +      ++    +F+S  L+ G +V     GSG      +    
Sbjct: 49 WQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPIN 93


>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28
          homodimer, immune system-signaling protein comple; HET:
          NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
          Length = 140

 Score = 26.3 bits (57), Expect = 8.8
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 22 RNSVFVSNVEPDSADSNEFLSTSLRSG-----VVVSAVDFGSGVTVFQDKSYYCIYKVVG 76
           N+V +S     +  S EF ++  +       V V   ++   + V+    + C  K+  
Sbjct: 17 DNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGN 76

Query: 77 WGIPLIMTGLWALVTAYY 94
            +   +  L+   T  Y
Sbjct: 77 ESVTFYLQNLYVNQTDIY 94


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,335,919
Number of extensions: 249200
Number of successful extensions: 619
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 19
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.0 bits)