BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15398
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer
          Length = 521

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/29 (89%), Positives = 26/29 (89%)

Query: 17  GAAANLRKEVIRNKIRAIGKMARVFSVLR 45
           GA A  RKEVIRNKIRAIGKMARVFSVLR
Sbjct: 386 GATAAARKEVIRNKIRAIGKMARVFSVLR 414


>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
           New Way Of Making An Old Binding Mode
 pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
           New Way Of Making An Old Binding Mode
 pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
           New Way Of Making An Old Binding Mode
 pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
           New Way Of Making An Old Binding Mode
          Length = 179

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 23  RKEVIRNKIRAIGKMARVFSVL 44
           RKEVIRNKIRAIGKMARVFSVL
Sbjct: 158 RKEVIRNKIRAIGKMARVFSVL 179


>pdb|2JZI|B Chain B, Structure Of Calmodulin Complexed With The Calmodulin
          Binding Domain Of Calcineurin
          Length = 24

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/23 (100%), Positives = 23/23 (100%)

Query: 23 RKEVIRNKIRAIGKMARVFSVLR 45
          RKEVIRNKIRAIGKMARVFSVLR
Sbjct: 2  RKEVIRNKIRAIGKMARVFSVLR 24


>pdb|2R28|C Chain C, The Complex Structure Of Calmodulin Bound To A
          Calcineurin Peptide
 pdb|2R28|D Chain D, The Complex Structure Of Calmodulin Bound To A
          Calcineurin Peptide
          Length = 25

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 23/25 (92%)

Query: 20 ANLRKEVIRNKIRAIGKMARVFSVL 44
          A  RKEVIRNKIRAIGKMARVFSVL
Sbjct: 1  AAARKEVIRNKIRAIGKMARVFSVL 25


>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
          Length = 176

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 14  LISGAAANLRKEVIRNKIRAIGKMARVFSVLR 45
           L  G++   R++ +RNKI AI K++R+FSVLR
Sbjct: 145 LSKGSSTGTRRKALRNKILAIAKVSRMFSVLR 176


>pdb|2W73|K Chain K, High-Resolution Structure Of The Complex Between
          Calmodulin And A Peptide From Calcineurin A
 pdb|2W73|L Chain L, High-Resolution Structure Of The Complex Between
          Calmodulin And A Peptide From Calcineurin A
 pdb|2W73|M Chain M, High-Resolution Structure Of The Complex Between
          Calmodulin And A Peptide From Calcineurin A
 pdb|2W73|O Chain O, High-Resolution Structure Of The Complex Between
          Calmodulin And A Peptide From Calcineurin A
          Length = 17

 Score = 35.4 bits (80), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 17/17 (100%), Positives = 17/17 (100%)

Query: 26 VIRNKIRAIGKMARVFS 42
          VIRNKIRAIGKMARVFS
Sbjct: 1  VIRNKIRAIGKMARVFS 17


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.142    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,351,459
Number of Sequences: 62578
Number of extensions: 27028
Number of successful extensions: 71
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)