Query psy15398
Match_columns 88
No_of_seqs 110 out of 140
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 19:58:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0375|consensus 99.7 3.7E-17 8.1E-22 135.9 7.3 60 5-64 365-440 (517)
2 PF04751 DUF615: Protein of un 66.5 7.6 0.00017 28.3 3.1 34 7-41 39-72 (157)
3 PRK05255 hypothetical protein; 57.4 11 0.00024 28.2 2.6 18 24-41 66-83 (171)
4 KOG4445|consensus 48.7 29 0.00063 29.3 4.0 36 4-39 147-182 (368)
5 TIGR00219 mreC rod shape-deter 40.5 1.1E+02 0.0023 23.9 5.8 41 18-58 69-110 (283)
6 PF12446 DUF3682: Protein of u 39.5 20 0.00043 26.5 1.6 12 59-70 89-100 (133)
7 PF10746 Phage_holin_6: Phage 37.7 62 0.0014 21.3 3.6 21 2-22 35-55 (66)
8 PF15364 PAXIP1_C: PAXIP1-asso 36.3 20 0.00044 26.3 1.2 26 37-64 24-49 (141)
9 PRK14110 F0F1 ATP synthase sub 33.6 1.8E+02 0.0039 22.4 6.1 45 4-48 225-275 (291)
10 PF15013 CCSMST1: CCSMST1 fami 33.6 33 0.00072 22.9 1.8 30 36-66 42-71 (77)
11 KOG4156|consensus 32.0 1E+02 0.0022 29.2 5.1 17 23-39 593-609 (1329)
12 PF11865 DUF3385: Domain of un 29.8 65 0.0014 22.8 2.9 23 6-28 11-33 (160)
13 PRK05621 F0F1 ATP synthase sub 29.8 2.3E+02 0.005 21.6 6.0 45 4-48 219-269 (284)
14 COG3028 Uncharacterized protei 29.1 48 0.001 25.7 2.3 16 26-41 78-93 (187)
15 PRK13425 F0F1 ATP synthase sub 26.8 2.7E+02 0.0059 21.5 6.1 45 4-48 224-274 (291)
16 TIGR03685 L21P_arch 50S riboso 26.7 1.8E+02 0.0039 20.0 4.5 24 24-47 19-48 (105)
17 PRK13427 F0F1 ATP synthase sub 26.3 2.8E+02 0.0061 21.4 6.1 45 4-48 223-273 (289)
18 PF12776 Myb_DNA-bind_3: Myb/S 26.0 1.3E+02 0.0028 18.5 3.4 19 41-59 58-76 (96)
19 PF15039 DUF4530: Domain of un 24.3 24 0.00052 25.3 -0.1 10 42-51 80-89 (111)
20 TIGR03323 alt_F1F0_F1_gam alte 24.0 3.3E+02 0.0071 21.0 6.0 45 4-48 220-270 (285)
21 PRK13424 F0F1 ATP synthase sub 23.6 3.4E+02 0.0075 20.9 6.1 45 4-48 224-274 (291)
22 KOG3960|consensus 21.9 2.2E+02 0.0047 23.5 4.8 42 23-64 154-195 (284)
23 PHA00426 type II holin 20.6 1.9E+02 0.0041 19.2 3.6 20 2-21 36-55 (67)
24 PF08182 Pedibin: Pedibin/Hym- 20.2 1.7E+02 0.0036 17.3 2.9 25 10-37 8-33 (35)
25 PRK13422 F0F1 ATP synthase sub 20.1 4.2E+02 0.0092 20.5 6.1 45 4-48 233-283 (298)
No 1
>KOG0375|consensus
Probab=99.69 E-value=3.7e-17 Score=135.92 Aligned_cols=60 Identities=47% Similarity=0.622 Sum_probs=52.8
Q ss_pred HHHHHHHHHHh-cc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhcCCCCCCCC
Q psy15398 5 YLTDLVLNCLI-SG---------------AAANLRKEVIRNKIRAIGKMARVFSVLRPLLSVIYIVRGGGGVEGGP 64 (88)
Q Consensus 5 ~iT~ml~n~l~-~g---------------~~~~~RrevLRnKI~aIgKMsRmF~vLREEsE~I~qLKg~~g~~g~~ 64 (88)
-||+||.|+|+ +. +..+.|+++|||||+|||||||||++||||||+|++|||++|.+.-|
T Consensus 365 KVTeMLV~iLNICSddEL~~e~~de~~~~~~~~~RkeiirnKIrAIgkmaRvfSvLREEsesVl~LKgltptg~LP 440 (517)
T KOG0375|consen 365 KVTEMLVNVLNICSDDELMTEEEDETVGTDEAAARKEIIRNKIRAIGKMARVFSVLREESESVLTLKGLTPTGALP 440 (517)
T ss_pred HHHHHHHHHHhhCchhhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCccCccc
Confidence 38999999997 21 22567999999999999999999999999999999999999877666
No 2
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=66.50 E-value=7.6 Score=28.32 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=21.0
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy15398 7 TDLVLNCLISGAAANLRKEVIRNKIRAIGKMARVF 41 (88)
Q Consensus 7 T~ml~n~l~~g~~~~~RrevLRnKI~aIgKMsRmF 41 (88)
.|-|+.-|...... ....+.|..+++|||++|-.
T Consensus 39 ~e~l~~Ai~~a~ri-~~~~arrRQ~qyIGKLmR~~ 72 (157)
T PF04751_consen 39 PEELRDAIMEARRI-TSHEARRRQLQYIGKLMREE 72 (157)
T ss_dssp -HHHHHHHHHGGG---SHHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHhC
Confidence 34444444433333 34678999999999998854
No 3
>PRK05255 hypothetical protein; Provisional
Probab=57.39 E-value=11 Score=28.17 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15398 24 KEVIRNKIRAIGKMARVF 41 (88)
Q Consensus 24 revLRnKI~aIgKMsRmF 41 (88)
.++.|..+++|||++|-.
T Consensus 66 ~eA~RRqlqyIGKLmR~~ 83 (171)
T PRK05255 66 HEARRRQLQYIGKLMRNE 83 (171)
T ss_pred chHHHHHHHHHHHHHhhC
Confidence 578999999999999874
No 4
>KOG4445|consensus
Probab=48.72 E-value=29 Score=29.27 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q psy15398 4 FYLTDLVLNCLISGAAANLRKEVIRNKIRAIGKMAR 39 (88)
Q Consensus 4 ~~iT~ml~n~l~~g~~~~~RrevLRnKI~aIgKMsR 39 (88)
-|||.|+-|+...+++..+-++..+.++.||-++-|
T Consensus 147 Ryl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcr 182 (368)
T KOG4445|consen 147 RYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCR 182 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhh
Confidence 389999999999999999989999999999966655
No 5
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=40.52 E-value=1.1e+02 Score=23.87 Aligned_cols=41 Identities=5% Similarity=-0.024 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHhhcCC
Q psy15398 18 AAANLRKEVIRNKIRAI-GKMARVFSVLRPLLSVIYIVRGGG 58 (88)
Q Consensus 18 ~~~~~RrevLRnKI~aI-gKMsRmF~vLREEsE~I~qLKg~~ 58 (88)
....+..+.||.++... ..+...+..|++|++.+.+|=++.
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34445678999999887 888888877999998887776653
No 6
>PF12446 DUF3682: Protein of unknown function (DUF3682); InterPro: IPR022152 This domain family is found in eukaryotes, and is typically between 125 and 136 amino acids in length.
Probab=39.52 E-value=20 Score=26.52 Aligned_cols=12 Identities=42% Similarity=0.479 Sum_probs=5.5
Q ss_pred CCCCCCCCchhh
Q psy15398 59 GVEGGPGKEEEE 70 (88)
Q Consensus 59 g~~g~~g~~~~~ 70 (88)
.+.+-.|.|+||
T Consensus 89 Sgtgh~rqEeeE 100 (133)
T PF12446_consen 89 SGTGHTRQEEEE 100 (133)
T ss_pred cCCcccchhhhh
Confidence 344444555444
No 7
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=37.71 E-value=62 Score=21.33 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHhcchhHHH
Q psy15398 2 EWFYLTDLVLNCLISGAAANL 22 (88)
Q Consensus 2 ~~~~iT~ml~n~l~~g~~~~~ 22 (88)
|||||--++|-.|+-|.-.=.
T Consensus 35 eWfyiati~YtvlQig~~v~k 55 (66)
T PF10746_consen 35 EWFYIATIAYTVLQIGYLVWK 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999998765443
No 8
>PF15364 PAXIP1_C: PAXIP1-associated-protein-1 C term PTIP binding protein
Probab=36.35 E-value=20 Score=26.29 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhhhhHHHhhcCCCCCCCC
Q psy15398 37 MARVFSVLRPLLSVIYIVRGGGGVEGGP 64 (88)
Q Consensus 37 MsRmF~vLREEsE~I~qLKg~~g~~g~~ 64 (88)
+.++|..| ....++.|.=.|++++.|
T Consensus 24 I~~LYe~L--~~~~~leL~w~~pgRR~P 49 (141)
T PF15364_consen 24 IVSLYELL--AKGGTLELQWKCPGRRPP 49 (141)
T ss_pred HHHHHHHH--hcCCCcceeeecCCCCCC
Confidence 45679999 777899999999999998
No 9
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=33.56 E-value=1.8e+02 Score=22.43 Aligned_cols=45 Identities=24% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcchhH--HHHHHHHHHH----HHHHHHHHHHHHHHhhhh
Q psy15398 4 FYLTDLVLNCLISGAAA--NLRKEVIRNK----IRAIGKMARVFSVLRPLL 48 (88)
Q Consensus 4 ~~iT~ml~n~l~~g~~~--~~RrevLRnK----I~aIgKMsRmF~vLREEs 48 (88)
+||.-.||+++.+.-.+ ..|..++.+= =.-|.++.+.|+.+||+.
T Consensus 225 ~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~ 275 (291)
T PRK14110 225 LYLNYQLYRALVESNAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEA 275 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888889998875444 4466665544 445667788999999985
No 10
>PF15013 CCSMST1: CCSMST1 family
Probab=33.55 E-value=33 Score=22.93 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhhhHHHhhcCCCCCCCCCC
Q psy15398 36 KMARVFSVLRPLLSVIYIVRGGGGVEGGPGK 66 (88)
Q Consensus 36 KMsRmF~vLREEsE~I~qLKg~~g~~g~~g~ 66 (88)
=..--|..||||++.-..|... -.+..+|-
T Consensus 42 ~fliyFC~lReEnDiD~~L~~~-L~e~~~~l 71 (77)
T PF15013_consen 42 AFLIYFCFLREENDIDRWLDKN-LYERVPGL 71 (77)
T ss_pred HHHHHHhhccccccHHHHHHhh-HHhhccCc
Confidence 3444579999999988888753 33334443
No 11
>KOG4156|consensus
Probab=31.95 E-value=1e+02 Score=29.25 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15398 23 RKEVIRNKIRAIGKMAR 39 (88)
Q Consensus 23 RrevLRnKI~aIgKMsR 39 (88)
+-++|+.|+++--++-|
T Consensus 593 klqvLKaKLQeaMk~rR 609 (1329)
T KOG4156|consen 593 KLQVLKAKLQEAMKLRR 609 (1329)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56899999999877755
No 12
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=29.85 E-value=65 Score=22.83 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcchhHHHHHHHHH
Q psy15398 6 LTDLVLNCLISGAAANLRKEVIR 28 (88)
Q Consensus 6 iT~ml~n~l~~g~~~~~RrevLR 28 (88)
+-+.|+|+|....+..-|+++||
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr 33 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALR 33 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 55789999998777777888775
No 13
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=29.81 E-value=2.3e+02 Score=21.57 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcchhHH--HHHHHH----HHHHHHHHHHHHHHHHHhhhh
Q psy15398 4 FYLTDLVLNCLISGAAAN--LRKEVI----RNKIRAIGKMARVFSVLRPLL 48 (88)
Q Consensus 4 ~~iT~ml~n~l~~g~~~~--~RrevL----RnKI~aIgKMsRmF~vLREEs 48 (88)
+|+.-.|+.++.+.-.++ .|..++ +|==.-+.++.+.|+.+||+.
T Consensus 219 ~yl~~~l~~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~~Nr~RQ~~ 269 (284)
T PRK05621 219 RYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAA 269 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888754443 355444 444455778888999999985
No 14
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.12 E-value=48 Score=25.73 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15398 26 VIRNKIRAIGKMARVF 41 (88)
Q Consensus 26 vLRnKI~aIgKMsRmF 41 (88)
+-|..+++||||+|-.
T Consensus 78 arrRQlQyIGKlmR~~ 93 (187)
T COG3028 78 ARRRQLQYIGKLMRDR 93 (187)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6788899999999965
No 15
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=26.78 E-value=2.7e+02 Score=21.52 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcchhHH--HHHHHH----HHHHHHHHHHHHHHHHHhhhh
Q psy15398 4 FYLTDLVLNCLISGAAAN--LRKEVI----RNKIRAIGKMARVFSVLRPLL 48 (88)
Q Consensus 4 ~~iT~ml~n~l~~g~~~~--~RrevL----RnKI~aIgKMsRmF~vLREEs 48 (88)
+||.-.||+++.+.-.++ .|..++ +|==.-+.++.+-|+.+||+.
T Consensus 224 ~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~ 274 (291)
T PRK13425 224 KHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAA 274 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888999988754444 365544 455566778889999999985
No 16
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=26.74 E-value=1.8e+02 Score=20.00 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHhhh
Q psy15398 24 KEVIRNKIRAIG------KMARVFSVLRPL 47 (88)
Q Consensus 24 revLRnKI~aIg------KMsRmF~vLREE 47 (88)
.+.|.+=+.+.| ++.-+.+.|--.
T Consensus 19 ~e~I~~IL~AAGv~ve~~~~~~la~~L~gk 48 (105)
T TIGR03685 19 EENLKAVLEAAGVEVDEARVKALVAALEGV 48 (105)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHHHHcCC
Confidence 457777778888 777777777554
No 17
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=26.28 E-value=2.8e+02 Score=21.41 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcchhHH--HHHHHH----HHHHHHHHHHHHHHHHHhhhh
Q psy15398 4 FYLTDLVLNCLISGAAAN--LRKEVI----RNKIRAIGKMARVFSVLRPLL 48 (88)
Q Consensus 4 ~~iT~ml~n~l~~g~~~~--~RrevL----RnKI~aIgKMsRmF~vLREEs 48 (88)
.||.-.||.+|.+.-.++ .|..++ +|==.-+.++.+.|+.+||++
T Consensus 223 ~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~ 273 (289)
T PRK13427 223 LVVKTAFLKAILEANASEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAK 273 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888754444 355554 455556778889999999986
No 18
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=25.99 E-value=1.3e+02 Score=18.50 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=10.7
Q ss_pred HHHHhhhhhhHHHhhcCCC
Q psy15398 41 FSVLRPLLSVIYIVRGGGG 59 (88)
Q Consensus 41 F~vLREEsE~I~qLKg~~g 59 (88)
++.||..=..+..|++.+|
T Consensus 58 ~~~lk~~y~~~~~l~~~sg 76 (96)
T PF12776_consen 58 WKTLKKDYRIWKELRNHSG 76 (96)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4455555555556666555
No 19
>PF15039 DUF4530: Domain of unknown function (DUF4530)
Probab=24.25 E-value=24 Score=25.33 Aligned_cols=10 Identities=40% Similarity=0.431 Sum_probs=5.1
Q ss_pred HHHhhhhhhH
Q psy15398 42 SVLRPLLSVI 51 (88)
Q Consensus 42 ~vLREEsE~I 51 (88)
-.||||-=+|
T Consensus 80 galreElvt~ 89 (111)
T PF15039_consen 80 GALREELVTI 89 (111)
T ss_pred HHHHHHHHHH
Confidence 3466664443
No 20
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=24.02 E-value=3.3e+02 Score=21.01 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcchhHH--HHHHHHH----HHHHHHHHHHHHHHHHhhhh
Q psy15398 4 FYLTDLVLNCLISGAAAN--LRKEVIR----NKIRAIGKMARVFSVLRPLL 48 (88)
Q Consensus 4 ~~iT~ml~n~l~~g~~~~--~RrevLR----nKI~aIgKMsRmF~vLREEs 48 (88)
+||.-.||.++.+.-.++ .|..++. |==.-+.++.+-|+.+||+.
T Consensus 220 ~yl~~~ly~alles~asE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~ 270 (285)
T TIGR03323 220 EYLFVSLFRACAESLASENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSA 270 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888754444 4665554 44455677889999999975
No 21
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=23.64 E-value=3.4e+02 Score=20.85 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcchhH--HHHHHHHHHHH----HHHHHHHHHHHHHhhhh
Q psy15398 4 FYLTDLVLNCLISGAAA--NLRKEVIRNKI----RAIGKMARVFSVLRPLL 48 (88)
Q Consensus 4 ~~iT~ml~n~l~~g~~~--~~RrevLRnKI----~aIgKMsRmF~vLREEs 48 (88)
+||.-.||.++.+.-.+ ..|..++.+=- .-+.++.+.|+.+||+.
T Consensus 224 ~yl~~~ly~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~ 274 (291)
T PRK13424 224 RFIKVQIYRGLLDTSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQAS 274 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888875443 44666665444 44566788899999985
No 22
>KOG3960|consensus
Probab=21.85 E-value=2.2e+02 Score=23.50 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhcCCCCCCCC
Q psy15398 23 RKEVIRNKIRAIGKMARVFSVLRPLLSVIYIVRGGGGVEGGP 64 (88)
Q Consensus 23 RrevLRnKI~aIgKMsRmF~vLREEsE~I~qLKg~~g~~g~~ 64 (88)
+-++|||-|..|-++.+|.+-+-+.-....++-|.-++.|-|
T Consensus 154 KVEILRsAI~YIE~Lq~LL~~~~~~~~~~~~~~g~~p~~~~P 195 (284)
T KOG3960|consen 154 KVEILRSAIRYIERLQALLQEQDQAEKGLAYAPGPLPGDGAP 195 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhcCCCCCCCCCC
Confidence 468999999999998776655554444444444554444444
No 23
>PHA00426 type II holin
Probab=20.59 E-value=1.9e+02 Score=19.23 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHhcchhHH
Q psy15398 2 EWFYLTDLVLNCLISGAAAN 21 (88)
Q Consensus 2 ~~~~iT~ml~n~l~~g~~~~ 21 (88)
+|||+.-..|-.++-|+-.-
T Consensus 36 ~WfyvAai~YTVvQig~~v~ 55 (67)
T PHA00426 36 EWFYVAAIAYTVVQIGAKVV 55 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998775443
No 24
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=20.16 E-value=1.7e+02 Score=17.33 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=16.4
Q ss_pred HHHHHh-cchhHHHHHHHHHHHHHHHHHH
Q psy15398 10 VLNCLI-SGAAANLRKEVIRNKIRAIGKM 37 (88)
Q Consensus 10 l~n~l~-~g~~~~~RrevLRnKI~aIgKM 37 (88)
++|++. +|++. -..|.+|.++.+..
T Consensus 8 ~Lq~~~a~Gedv---~~~LE~Kek~L~n~ 33 (35)
T PF08182_consen 8 VLQIQLADGEDV---CKELEQKEKELSNF 33 (35)
T ss_pred HHHHHHhcchhH---HHHHHHHHHHHHhc
Confidence 567766 45444 34888888887654
No 25
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=20.13 E-value=4.2e+02 Score=20.55 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcchhHH--HHHHHHH----HHHHHHHHHHHHHHHHhhhh
Q psy15398 4 FYLTDLVLNCLISGAAAN--LRKEVIR----NKIRAIGKMARVFSVLRPLL 48 (88)
Q Consensus 4 ~~iT~ml~n~l~~g~~~~--~RrevLR----nKI~aIgKMsRmF~vLREEs 48 (88)
+||.-.||.+|.+.-.++ .|..++. |==.-+.++.+.|+.+||++
T Consensus 233 ~yl~~~ly~al~eS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~ 283 (298)
T PRK13422 233 RYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAM 283 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888754443 4655554 44455678889999999985
Done!