RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15398
         (88 letters)



>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
           subunit) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 473

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 26/29 (89%), Positives = 26/29 (89%)

Query: 17  GAAANLRKEVIRNKIRAIGKMARVFSVLR 45
           GA A  RKEVIRNKIRAIGKMARVFSVLR
Sbjct: 373 GATAAARKEVIRNKIRAIGKMARVFSVLR 401


>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 323

 Score = 25.3 bits (54), Expect = 1.1
 Identities = 3/15 (20%), Positives = 8/15 (53%)

Query: 66  KEEEEEEEEEEEEEN 80
           + E++ E+     E+
Sbjct: 306 EAEDKTEKLAAALEH 320



 Score = 24.5 bits (52), Expect = 1.9
 Identities = 2/14 (14%), Positives = 6/14 (42%)

Query: 67  EEEEEEEEEEEEEN 80
           ++ E+     E  +
Sbjct: 309 DKTEKLAAALEHHH 322



 Score = 24.2 bits (51), Expect = 2.7
 Identities = 3/15 (20%), Positives = 7/15 (46%)

Query: 66  KEEEEEEEEEEEEEN 80
            E++ E+     E +
Sbjct: 307 AEDKTEKLAAALEHH 321



 Score = 24.2 bits (51), Expect = 3.3
 Identities = 2/14 (14%), Positives = 5/14 (35%)

Query: 67  EEEEEEEEEEEEEN 80
           + E+     E   +
Sbjct: 310 KTEKLAAALEHHHH 323


>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
          molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 116

 Score = 24.1 bits (52), Expect = 2.5
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 53 IVRGGGGVEGGPGKEEEEEEEEEEEEENGPQTTFEV 88
          ++ GG  +EG      E +EEEEE +       F V
Sbjct: 39 LLVGGQELEGAQALGPEVQEEEEEPQG-DEDVLFRV 73



 Score = 23.4 bits (50), Expect = 4.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 58 GGVEGGPGKEEEEEEEEEEEEENGPQTT 85
           G +    + +EEEEE + +E+   + T
Sbjct: 47 EGAQALGPEVQEEEEEPQGDEDVLFRVT 74


>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
           {Escherichia coli [TaxId: 562]}
          Length = 159

 Score = 23.9 bits (51), Expect = 3.3
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 67  EEEEEEEEEEEEENGPQTTFEV 88
           E    E  + + +N     FE+
Sbjct: 134 ESVFSEFHDADAQNSHSYCFEI 155


>d1df7a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 159

 Score = 23.1 bits (49), Expect = 5.0
 Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 8/73 (10%)

Query: 24  KEVIRNKIRAIGKMARVFSVLRPLLSVIYIVRGGGGVEGGPG--------KEEEEEEEEE 75
           +E + +    +    +V+++  P  +   +     G+    G        +    E  E 
Sbjct: 83  EEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETGEW 142

Query: 76  EEEENGPQTTFEV 88
               +G +     
Sbjct: 143 RFSRSGLRYRLYS 155


>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
           [TaxId: 562]}
          Length = 213

 Score = 22.8 bits (49), Expect = 7.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 15  ISGAAANLRKEVIRNKIRAI 34
           ++G+ A L+   ++ K+RA 
Sbjct: 151 VTGSPAVLQSPQVQAKVRAT 170


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,488
Number of extensions: 14547
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 20
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)