BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15401
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer
          Length = 521

 Score =  101 bits (252), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 60/80 (75%), Gaps = 10/80 (12%)

Query: 11  EESESVLQLKGLTPTGSLPLGALSGGKTSLKNA----------LQGFSPNHKITSFAEAK 60
           EESESVL LKGLTPTG LP G LSGGK +L++A          ++GFSP HKITSF EAK
Sbjct: 415 EESESVLTLKGLTPTGMLPSGVLSGGKQTLQSATVEAIEADEAIKGFSPQHKITSFEEAK 474

Query: 61  GLDAINERMPPRKDAPPTPS 80
           GLD INERMPPR+DA P+ +
Sbjct: 475 GLDRINERMPPRRDAMPSDA 494


>pdb|1VZY|A Chain A, Crystal Structure Of The Bacillus Subtilis Hsp33
 pdb|1VZY|B Chain B, Crystal Structure Of The Bacillus Subtilis Hsp33
          Length = 291

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 21 GLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSFAEAKG 61
          G T T SL LGA+  G   L   ++G  P   I + A AKG
Sbjct: 43 GRTMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADANAKG 83


>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
 pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
 pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
 pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
          Length = 220

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 25 TGSLPLGALSGGKTSLKNALQGFSPNHKITSFAEAKGLD 63
          T +L  G LSG K +  +   GFSP  ++   AE +GL+
Sbjct: 35 TLALQTGLLSGKKVAYVDTEGGFSPE-RLVQMAETRGLN 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.127    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,623,964
Number of Sequences: 62578
Number of extensions: 90293
Number of successful extensions: 139
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 5
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 45 (21.9 bits)