Query psy15401
Match_columns 107
No_of_seqs 104 out of 157
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 20:04:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0375|consensus 99.9 1.3E-26 2.8E-31 196.7 5.9 97 8-106 419-516 (517)
2 PF04806 EspF: EspF protein re 29.9 19 0.00042 22.9 0.2 20 84-103 10-29 (47)
3 KOG0734|consensus 28.0 22 0.00047 33.2 0.3 30 10-39 313-347 (752)
4 PF14738 PaaSYMP: Solute carri 17.4 1.4E+02 0.003 22.6 2.7 54 3-74 16-70 (154)
5 PF15627 CEP76-C2: CEP76 C2 do 15.2 54 0.0012 25.0 0.0 27 8-34 115-144 (156)
6 KOG2126|consensus 15.0 82 0.0018 30.3 1.1 16 14-30 113-128 (895)
7 PF09435 DUF2015: Fungal prote 13.6 1.3E+02 0.0029 22.5 1.8 32 30-66 80-111 (128)
8 COG5328 Uncharacterized protei 12.7 1.8E+02 0.0039 22.5 2.3 29 30-62 121-149 (160)
9 PHA02931 hypothetical protein; 11.8 93 0.002 21.1 0.4 17 52-68 3-19 (72)
10 smart00703 NRF N-terminal doma 11.5 95 0.0021 21.2 0.4 35 19-66 5-39 (110)
No 1
>KOG0375|consensus
Probab=99.93 E-value=1.3e-26 Score=196.71 Aligned_cols=97 Identities=63% Similarity=0.922 Sum_probs=85.0
Q ss_pred chhhcchhhhhhhcCCCCCCCCCcccccChHHHHH-HhhcCCCCccccchHHHhhhhhhhhcCCCCCCCCCCCCCCCCCC
Q psy15401 8 SPVEESESVLQLKGLTPTGSLPLGALSGGKTSLKN-ALQGFSPNHKITSFAEAKGLDAINERMPPRKDAPPTPSPVTEDK 86 (107)
Q Consensus 8 vLREEsEsVleLKgltP~G~LP~G~Ls~G~e~Lk~-al~gf~~~~~I~sFe~AR~~D~~NErmPp~~~~~~~~~~~~~~~ 86 (107)
|||||+|+|++|||++|+|+||.|+|++|+++|++ |++||++.|+|++|++||++|++||||||+++...+.+...+.+
T Consensus 419 vLREEsesVl~LKgltptg~LP~G~LsgG~~~l~~aa~~g~s~~h~i~sFeeAr~lD~iNErmPP~~~~~~~~~~~~~~~ 498 (517)
T KOG0375|consen 419 VLREESESVLTLKGLTPTGALPLGALSGGKQGLKEAAIQGFSPQHKITSFEEARGLDRINERMPPRRDELPSESPKYSEK 498 (517)
T ss_pred HHHHhHHHHHHHhCCCccCccchhhhhcchhhHHHHHhhcCCcccccccHHHhhccchhhccCCCCcccccCCCccchhh
Confidence 89999999999999999999999999999999999 79999999999999999999999999999999988887755544
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy15401 87 PPPSLPKDPPPSSNTNSHSS 106 (107)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ 106 (107)
. .+.+...++.|..++++
T Consensus 499 ~--~~~~~~~~~~~~~~~~~ 516 (517)
T KOG0375|consen 499 V--AHSSEAHGSDNGGSNSA 516 (517)
T ss_pred h--hhccccCcccccccccC
Confidence 3 45555666666666654
No 2
>PF04806 EspF: EspF protein repeat; InterPro: IPR006891 Enteropathogenic Escherichia coli O127:H6 attaches to the intestinal muscosa through actin pedestals that are created after it has injected the Type III secretion protein EspF (E. coli secreted protein F-like protein from prophage U) into the cells. EspF recruits the actin machinery by activating the WASP (Wiscott-Aldrich syndrome protein) family of actin nucleating factors []. Subsequent cell-death (apoptosis) is caused by EspF being targeted to the mitochondria as a consequence of its mitochondrial targeting sequence. Import into mitochondria leads to a loss of membrane potential, leakage of cytochrome c and activation of the apoptotic caspase cascade. Mutation of leucine to glutamic at position 16 of EspF (L16E) resulted in the failure of EspF import into mitochondria; mitochondrial membrane potential was not affected and cell death abolished. This suggests that the targeting of EspF to mitochondria is essential for bacterial pathogenesis and apoptosis [, ].; PDB: 2KXC_B 2K42_B.
Probab=29.86 E-value=19 Score=22.89 Aligned_cols=20 Identities=40% Similarity=0.803 Sum_probs=2.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy15401 84 EDKPPPSLPKDPPPSSNTNS 103 (107)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ 103 (107)
-+.|-|++|+.|+|-||.-|
T Consensus 10 hipp~P~rPAPpPPtQNnQs 29 (47)
T PF04806_consen 10 HIPPTPNRPAPPPPTQNNQS 29 (47)
T ss_dssp S-----SS------------
T ss_pred cCCCCCCCCCCCCCCccccc
Confidence 45677899999998886544
No 3
>KOG0734|consensus
Probab=27.98 E-value=22 Score=33.20 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=20.2
Q ss_pred hhcchhhh-hhhcC----CCCCCCCCcccccChHH
Q psy15401 10 VEESESVL-QLKGL----TPTGSLPLGALSGGKTS 39 (107)
Q Consensus 10 REEsEsVl-eLKgl----tP~G~LP~G~Ls~G~e~ 39 (107)
++|=|.|+ -||.= .=+|+||+|+|+-|..+
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPG 347 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPG 347 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCC
Confidence 44545444 46651 12799999999988776
No 4
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=17.41 E-value=1.4e+02 Score=22.60 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=34.3
Q ss_pred CCCccchhhcc-hhhhhhhcCCCCCCCCCcccccChHHHHHHhhcCCCCccccchHHHhhhhhhhhcCCCCCC
Q psy15401 3 FTNNLSPVEES-ESVLQLKGLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAINERMPPRKD 74 (107)
Q Consensus 3 ~~~~~vLREEs-EsVleLKgltP~G~LP~G~Ls~G~e~Lk~al~gf~~~~~I~sFe~AR~~D~~NErmPp~~~ 74 (107)
|+-..|+++.+ =-|+.|.+|+.+.=||.|+ ..+. -++.||+-=.+++.|||..|
T Consensus 16 y~pe~~~~~~~~pE~l~L~~L~~~~GlPag~-----~Eve-------------~IeRaR~KRawEa~Lpp~~d 70 (154)
T PF14738_consen 16 YSPEYVVPEGSNPELLTLATLTWGDGLPAGL-----AEVE-------------MIERAREKRAWEAALPPLDD 70 (154)
T ss_pred CCCCccCCCCCChhHhhHhhcCcCCCCCCcH-----HHHH-------------HHHHHHHHHHHHHhCCCCCC
Confidence 34455555544 1467777888644466654 3332 24788988999999998544
No 5
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=15.17 E-value=54 Score=24.99 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=20.6
Q ss_pred chhhcc---hhhhhhhcCCCCCCCCCcccc
Q psy15401 8 SPVEES---ESVLQLKGLTPTGSLPLGALS 34 (107)
Q Consensus 8 vLREEs---EsVleLKgltP~G~LP~G~Ls 34 (107)
||.... .-.+||+|..+..++|.|+|.
T Consensus 115 vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~ 144 (156)
T PF15627_consen 115 VLCSGNGSTSFTVELCGVGPESKVPVGILD 144 (156)
T ss_pred HhccCCCccceeEEEeccCCCCccceeEEE
Confidence 444444 566899999988899999883
No 6
>KOG2126|consensus
Probab=14.99 E-value=82 Score=30.35 Aligned_cols=16 Identities=63% Similarity=0.937 Sum_probs=13.6
Q ss_pred hhhhhhhcCCCCCCCCC
Q psy15401 14 ESVLQLKGLTPTGSLPL 30 (107)
Q Consensus 14 EsVleLKgltP~G~LP~ 30 (107)
++.+.||||| +|.||-
T Consensus 113 TTlQRLKGLT-TGsLPT 128 (895)
T KOG2126|consen 113 TTLQRLKGLT-TGSLPT 128 (895)
T ss_pred cHHHHhhccc-cCCCcc
Confidence 5678999999 899993
No 7
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=13.58 E-value=1.3e+02 Score=22.49 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=19.5
Q ss_pred CcccccChHHHHHHhhcCCCCccccchHHHhhhhhhh
Q psy15401 30 LGALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAIN 66 (107)
Q Consensus 30 ~G~Ls~G~e~Lk~al~gf~~~~~I~sFe~AR~~D~~N 66 (107)
.|+-..+++.|+.-. .++=.+|++||.+=..+
T Consensus 80 ~GLD~~ak~EI~~IM-----~~~~v~FDeARliy~~~ 111 (128)
T PF09435_consen 80 AGLDDAAKREIRRIM-----KRRRVNFDEARLIYTER 111 (128)
T ss_pred cCcCHHHHHHHHHHH-----HHcCCCHHHHHHHHHHH
Confidence 355556667776532 22236899999875443
No 8
>COG5328 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=12.65 E-value=1.8e+02 Score=22.47 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=22.9
Q ss_pred CcccccChHHHHHHhhcCCCCccccchHHHhhh
Q psy15401 30 LGALSGGKTSLKNALQGFSPNHKITSFAEAKGL 62 (107)
Q Consensus 30 ~G~Ls~G~e~Lk~al~gf~~~~~I~sFe~AR~~ 62 (107)
+|+--.|++.|.+.|+| +-=..|+.||++
T Consensus 121 RGlHNeGSqtL~dRL~G----Ki~~DfDTARRL 149 (160)
T COG5328 121 RGLHNEGSQTLMDRLSG----KIKVDFDTARRL 149 (160)
T ss_pred cccccccHHHHHHHhcC----ceeechHHHHHH
Confidence 67888999999998865 223579999986
No 9
>PHA02931 hypothetical protein; Provisional
Probab=11.82 E-value=93 Score=21.07 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.7
Q ss_pred cccchHHHhhhhhhhhc
Q psy15401 52 KITSFAEAKGLDAINER 68 (107)
Q Consensus 52 ~I~sFe~AR~~D~~NEr 68 (107)
+|-+|-+.|.+|++|.-
T Consensus 3 kiltfvknkiidlinnd 19 (72)
T PHA02931 3 KILTFVKNKIIDLINND 19 (72)
T ss_pred HHHHHHHhhHHhhhccc
Confidence 57889999999999964
No 10
>smart00703 NRF N-terminal domain in C. elegans NRF-6 (Nose Resistant to Fluoxetine-4) and NDG-4 (resistant to nordihydroguaiaretic acid-4). Also present in several other worm and fly proteins.
Probab=11.51 E-value=95 Score=21.18 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=23.0
Q ss_pred hhcCCCCCCCCCcccccChHHHHHHhhcCCCCccccchHHHhhhhhhh
Q psy15401 19 LKGLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAIN 66 (107)
Q Consensus 19 LKgltP~G~LP~G~Ls~G~e~Lk~al~gf~~~~~I~sFe~AR~~D~~N 66 (107)
||-+-..|++|.|+|.+..-.+ =+|++-+++....
T Consensus 5 l~~~Da~Gk~psGll~Gn~~~l-------------G~ydeC~~i~~~~ 39 (110)
T smart00703 5 LKQLDAWGKFPSGLLEGNNLWL-------------GSYEECLRISGPG 39 (110)
T ss_pred eEeecccCCCCCeEEEeecCcc-------------cCHHHHhhhhccC
Confidence 4556678999999987743222 3567777765543
Done!