RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15401
(107 letters)
>gnl|CDD|116541 pfam07931, CPT, Chloramphenicol phosphotransferase-like protein.
The members of this family are all similar to
chloramphenicol 3-O phosphotransferase (CPT) expressed
by Streptomyces venezuelae. Chloramphenicol (Cm) is a
metabolite produced by this bacterium that can inhibit
ribosomal peptidyl transferase activity and therefore
protein production. By transferring a phosphate group
to the C-3 hydroxyl group of Cm, CPT inactivates this
potentially lethal metabolite.
Length = 174
Score = 32.4 bits (74), Expect = 0.024
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 31 GALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAINERMPPRKDAP 76
G S GK+S+ ALQ + G+DA E MPP++
Sbjct: 8 GGSSSGKSSIARALQDILD----GPWL-HFGVDAFVEAMPPKRQDS 48
>gnl|CDD|238139 cd00227, CPT, Chloramphenicol (Cm) phosphotransferase (CPT).
Cm-inactivating enzyme; modifies the primary (C-3)
hydroxyl of the antibiotic. Related structurally to
shikimate kinase II.
Length = 175
Score = 31.3 bits (71), Expect = 0.048
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 11/45 (24%)
Query: 31 GALSGGKTSLKNALQGFSPNHKITSFAE---AKGLDAINERMPPR 72
G S GK+S+ ALQ + AE G+D+ E +P +
Sbjct: 9 GGSSAGKSSIARALQ--------SVLAEPWLHFGVDSFIEALPLK 45
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 30.3 bits (68), Expect = 0.17
Identities = 18/59 (30%), Positives = 21/59 (35%)
Query: 48 SPNHKITSFAEAKGLDAINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNSHSS 106
S H T FA G D P + PTP+P P P P PS+ S
Sbjct: 387 SARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDG 445
Score = 25.3 bits (55), Expect = 8.8
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 70 PPRKDAPPTPSPVTEDKPPPSLPKDPPP 97
P + P P PPP P+ PPP
Sbjct: 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPP 2934
Score = 25.3 bits (55), Expect = 10.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 59 AKGLDAINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSN 100
A+ +++R PR APP+P P + P P P P++N
Sbjct: 2596 ARPRAPVDDRGDPRGPAPPSPLP-PDTHAPDPPPPSPSPAAN 2636
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 29.4 bits (67), Expect = 0.25
Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 34 SG-GKTSLKNALQGFSP 49
SG GKTSL NAL GF P
Sbjct: 385 SGAGKTSLLNALLGFLP 401
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 29.6 bits (66), Expect = 0.26
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 69 MPPRKDAPPTPSPVTEDKPPPSLPKDPPP 97
+PP PP P P E PPS P PPP
Sbjct: 4 LPPGNPPPPPPPPGFE---PPSQPPPPPP 29
>gnl|CDD|212001 TIGR04278, viperin, antiviral radical SAM protein viperin.
Viperin (Virus Inhibitory Protein, ER-associated,
Iterferon-inducible) is a radical SAM enzyme found in
human and other vertebrates. It is both induced by
interferon and demonstrably active in blocking
replication by several types of virus, apparently by
modifying lipid chemistries in lipid droplets and
membrane rafts.
Length = 347
Score = 28.5 bits (64), Expect = 0.65
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 64 AINERMPPRKDAPPTPSPVTEDKPPPSLP 92
A +E+ + PT ED P+ P
Sbjct: 30 AGSEKSRQQLRGEPTRKEEEEDPDQPTTP 58
>gnl|CDD|226412 COG3896, COG3896, Chloramphenicol 3-O-phosphotransferase [Defense
mechanisms].
Length = 205
Score = 28.0 bits (62), Expect = 0.78
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 31 GALSGGKTSLKNALQGFSPNHKITSFAEA---KGLDAINERMPPRK 73
G S GK+S+ A Q AE G+D E +PP +
Sbjct: 30 GGSSAGKSSIALAFQ--------DLAAEPWMHIGIDLFWEALPPEQ 67
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the
cells of red pigments, which are synthesized from
guanine, and brown pigments, which are synthesized from
tryptophan. The pigment precursors are encoded by the
white, brown, and scarlet genes, respectively. Evidence
from genetic and biochemical studies suggest that the
White and Brown proteins function as heterodimers to
import guanine, while the White and Scarlet proteins
function to import tryptophan. However, a recent study
also suggests that White may be involved in the
transport of a metabolite, such as 3-hydroxykynurenine,
across intracellular membranes. Mammalian ABC
transporters belonging to the White subfamily (ABCG1,
ABCG5, and ABCG8) have been shown to be involved in the
regulation of lipid-trafficking mechanisms in
macrophages, hepatocytes, and intestinal mucosa cells.
ABCG1 (ABC8), the human homolog of the Drosophila white
gene is induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 27.2 bits (61), Expect = 1.6
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 7 LSPVEESESVLQLKGLT---PTGSLP--LGALSGGKTSLKNALQGFSPNHKITS 55
L ++ L ++ +G + LG+ GKT+L +A+ G TS
Sbjct: 11 LKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS 64
>gnl|CDD|233038 TIGR00593, pola, DNA polymerase I. All proteins in this family
for which functions are known are DNA polymerases Many
also have an exonuclease motif. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 887
Score = 27.3 bits (61), Expect = 1.8
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 16 VLQLKGLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSF 56
L+ K LT + P A+ G L L+ P + +F
Sbjct: 16 ALKNKPLTNSKGEPTNAVYGFTKMLLKLLKEEKPTYVAVAF 56
>gnl|CDD|145734 pfam02739, 5_3_exonuc_N, 5'-3' exonuclease, N-terminal
resolvase-like domain.
Length = 169
Score = 26.8 bits (60), Expect = 2.1
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 16 VLQLKGLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSF 56
L LT + P A+ G L L+ P + F
Sbjct: 18 ALPKVPLTNSKGEPTNAVYGFLRMLLKLLKEEKPTYVAVVF 58
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 27.2 bits (61), Expect = 2.1
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 57 AEAKGLDAINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSS 99
A A A P AP P+P P+ P P ++
Sbjct: 48 AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA 90
Score = 26.0 bits (58), Expect = 4.7
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 70 PPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNS 103
APP P+ P+ P ++ +
Sbjct: 77 AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110
>gnl|CDD|236511 PRK09429, mepA, penicillin-insensitive murein endopeptidase;
Reviewed.
Length = 275
Score = 26.8 bits (60), Expect = 2.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 75 APPTPSPVTEDKPPPSLPK 93
PP P+ + KPPP LP
Sbjct: 248 EPPKPTTKPKPKPPPPLPP 266
>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related
proteins. Cinnamyl alcohol dehydrogenases (CAD),
members of the medium chain dehydrogenase/reductase
family, reduce cinnamaldehydes to cinnamyl alcohols in
the last step of monolignal metabolism in plant cells
walls. CAD binds 2 zinc ions and is NADPH- dependent.
CAD family members are also found in non-plant species,
e.g. in yeast where they have an aldehyde reductase
activity. The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes, or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 330
Score = 26.5 bits (59), Expect = 2.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 31 GALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAINE---RM 69
G+ GG+ L+ AL F+ K+ E LD NE RM
Sbjct: 279 GSTHGGRADLQEALD-FAAEGKVKPMIETFPLDQANEAYERM 319
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated.
Length = 740
Score = 26.6 bits (59), Expect = 2.7
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Query: 40 LKNALQGFSPNHKITSFAEAKGLDAINERM-----------PPRKDAPPTPSPVTE 84
L+N + F H F E + D + E++ + D PPTP TE
Sbjct: 227 LENNGETFVAQHSTRRFWEKEEADRVFEKLGKTAEVTEVEKGTKTDKPPTPFNTTE 282
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 26.7 bits (59), Expect = 2.8
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 70 PPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNSH 104
P R+ A P P P PP + P +
Sbjct: 402 PVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAI 436
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 26.7 bits (59), Expect = 3.0
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 70 PPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNSHSSS 107
P+ P P E + P S P+ P +S ++ SS
Sbjct: 210 APKAKPSPPPPKEEEVEKPASSPE--PKASKPSAPPSS 245
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin
depolymerizing factors. Actin depolymerization
factor/cofilin-like domains (ADF domains) are present in
a family of essential eukaryotic actin regulatory
proteins. These proteins enhance the turnover rate of
actin, and interact with actin monomers (G-actin) as
well as actin filaments (F-actin), typically with a
preference for ADP-G-actin subunits. The basic function
of cofilin is to promote disassembly of aged actin
filaments. Vertebrates have three isoforms of cofilin:
cofilin-1 (Cfl1, non-muscle cofilin), cofilin-2 (muscle
cofilin), and ADF (destrin). When bound to actin
monomers, cofilins inhibit their spontaneous exchange of
nucleotides. The cooperative binding to (aged)
ADP-F-actin induces a local change in the actin filament
structure and further promotes aging.
Length = 133
Score = 26.0 bits (58), Expect = 3.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 37 KTSLKNALQGFSPNHKITSFAEAKGLDAINER 68
K +LK L G + T +E + I E+
Sbjct: 102 KDALKKKLNGIKKEIQATDLSELS-EEEILEK 132
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 26.1 bits (57), Expect = 4.0
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 57 AEAKGLDAINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPS 98
A A + E P +A P+P + P + P P P+
Sbjct: 203 ANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPA 244
Score = 25.4 bits (55), Expect = 9.3
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 46 GFSPNHKITSFAEAKGLDAINERMPPRKDAP---PTPSPVTEDKPPPSLPKDPPPSSNTN 102
+P A A P AP P P + P P S+ +
Sbjct: 204 NAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGD 263
Query: 103 S 103
S
Sbjct: 264 S 264
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 25.9 bits (57), Expect = 4.4
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 76 PPTPSPVTEDKPPPSLPKDPPPSSNTNSHSSS 107
PPT PV E PPP P PPP S S S+
Sbjct: 174 PPTEEPVLEVPPPPPPPPPPPPPSLQQSTSAI 205
>gnl|CDD|221302 pfam11901, DUF3421, Protein of unknown function (DUF3421). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 119 to
296 amino acids in length.
Length = 118
Score = 25.3 bits (56), Expect = 5.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 26 GSLPLGALSGGKTSLKNAL 44
G++P A+ G+T L
Sbjct: 65 GNVPKNAVLAGRTEDGEPL 83
>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter. The Epithelial Na+
Channel (ENaC) Family (TC 1.A.06)The ENaC family
consists of sodium channels from animals and has no
recognizable homologues in other eukaryotes or bacteria.
The vertebrate ENaC proteins from epithelial cells
cluster tightly together on the phylogenetic tree:
voltage-insensitive ENaC homologues are also found in
the brain. Eleven sequenced C. elegans proteins,
including the degenerins, are distantly related to the
vertebrate proteins as well as to each other. At least
some ofthese proteins form part of a mechano-transducing
complex for touch sensitivity. Other members of the ENaC
family, the acid-sensing ion channels, ASIC1-3,are homo-
or hetero-oligomeric neuronal H+-gated channels that
mediate pain sensation in response to tissue acidosis.
The homologous Helix aspersa(FMRF-amide)-activated Na+
channel is the first peptide neurotransmitter-gated
ionotropic receptor to be sequenced.Mammalian ENaC is
important for the maintenance of Na+ balance and the
regulation of blood pressure. Three homologous ENaC
subunits, a, b and g, havebeen shown to assemble to form
the highly Na+-selective channel.This model is designed
from the vertebrate members of the ENaC family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 595
Score = 25.8 bits (57), Expect = 5.4
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 74 DAPPTPSPVTEDK--PPPSLPKDPPPSSNT 101
D PPT SLP PPP+ NT
Sbjct: 565 DDPPTFPSALPLPHASGLSLPGTPPPNYNT 594
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 25.9 bits (57), Expect = 5.5
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 57 AEAKGLDAINERMP-PRKDAPPTPSPVTEDKPPPSLPKDPPPS 98
AEA L A E + P P P+P E + P + P+
Sbjct: 60 AEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPA 102
>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide
riboside.
Length = 187
Score = 25.4 bits (56), Expect = 5.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 31 GALSGGKTSLKNALQGFSPN 50
G + GKT+L LQ PN
Sbjct: 6 GVTNSGKTTLAKLLQRILPN 25
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 25.7 bits (57), Expect = 6.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 14 ESVLQLKGLTPTGSLPLGALSGG 36
ES+ +LK T + L + LSGG
Sbjct: 387 ESIQRLKVKTASPELAIARLSGG 409
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 25.3 bits (55), Expect = 6.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 30 LGALSGGKTSLKNALQG 46
+GA+ GKT+L NALQG
Sbjct: 7 VGAVGAGKTTLFNALQG 23
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 25.6 bits (56), Expect = 6.7
Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 55 SFAEAKGLDAINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSN 100
A A G DA + PP PP P P PP +
Sbjct: 901 RVATAPGGDAASA--PPPGAGPPAPPQAVPPPRTTQPPAAPPRGPD 944
>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional.
Length = 1250
Score = 25.8 bits (56), Expect = 6.7
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 67 ERMPPRKDAP-PTPSPVTEDKPPPSLPKDPPPS 98
E PP P PTP P P P+ +P P+
Sbjct: 917 EVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPA 949
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which
are homologues of floricaula (FLO) and Leafy (LFY)
proteins which are floral meristem identity proteins.
Mutations in the sequences of these proteins affect
flower and leaf development.
Length = 382
Score = 25.4 bits (56), Expect = 7.3
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 71 PRKDAPPTPSPVTEDKPPPSLPKDPPPSS 99
PR PP P + P P ++
Sbjct: 15 PRPAVPPPPPRLLPPAAVPPPPLAAAAAA 43
>gnl|CDD|225248 COG2373, COG2373, Large extracellular alpha-helical protein [General
function prediction only].
Length = 1621
Score = 25.1 bits (55), Expect = 9.5
Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 13/107 (12%)
Query: 2 NFTNNLSPVEESESVLQLKGLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSFAEAKG 61
N T V E L+ G +L L G T+L L+ + KI A
Sbjct: 1038 NLTGKAGDVLTVEGTLKFNGKEAPQTLTLAE--GSATTLFFPLRALDGSGKID--ATLSV 1093
Query: 62 LDAINERMPPRKDAPPTPSPVT---------EDKPPPSLPKDPPPSS 99
+ +++ + P P T L P +
Sbjct: 1094 SGQVGDKLERHLNVRPAVPPQTQVKTVVLAPGFTISGDLLAGLSPQA 1140
>gnl|CDD|224967 COG2056, COG2056, Predicted permease [General function prediction
only].
Length = 444
Score = 25.0 bits (55), Expect = 9.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 16 VLQLKGLTPTGSLPLGALSG 35
+QL LT T S+ LGAL+G
Sbjct: 254 AVQL--LTFTDSMILGALAG 271
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 25.0 bits (55), Expect = 9.6
Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 49 PNHKITSFAEAKGLDAINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNT 101
P + A A + P K A PTP P KP P PP +
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKP--KAAAPTPEPPAASKPTPPAAAKPPEPAPA 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.303 0.125 0.356
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,376,464
Number of extensions: 446072
Number of successful extensions: 1122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 994
Number of HSP's successfully gapped: 214
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 53 (24.5 bits)