RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15401
(107 letters)
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 99.5 bits (248), Expect = 5e-26
Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 10/103 (9%)
Query: 11 EESESVLQLKGLTPTGSLPLGALSGGKTSLKNA----------LQGFSPNHKITSFAEAK 60
EESESVL LKGLTPTG LP G LSGGK +L++A ++GFSP HKITSF EAK
Sbjct: 415 EESESVLTLKGLTPTGMLPSGVLSGGKQTLQSATVEAIEADEAIKGFSPQHKITSFEEAK 474
Query: 61 GLDAINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNS 103
GLD INERMPPR+DA P+ + + + + S+ +NS
Sbjct: 475 GLDRINERMPPRRDAMPSDANLNSINKALTSETNGTDSNGSNS 517
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein
trafficking, hydrolase AC; 2.40A {Plasmodium falciparum
3D7}
Length = 163
Score = 30.7 bits (69), Expect = 0.047
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 41 KNALQGFSPNHKITSFAEAKGLDAINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSN 100
+ F P K + A + + PP P P+ E K + ++ + N
Sbjct: 92 NYGISDFIPERKYRTKAADHYRKILRSIV--HNVDPPAPLPLDEGKSLINYGRNENVNEN 149
Query: 101 TNSHSSS 107
+ S+
Sbjct: 150 NKNQYSN 156
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 31.2 bits (71), Expect = 0.048
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 67 ERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNSHSSS 107
ER R++ P+ E + PS + N + +
Sbjct: 18 ERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEA 58
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 30.2 bits (69), Expect = 0.091
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 19 LKGLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAIN---ERM 69
L G+ GS+ G + L+ ALQ F+ K+ + E + L+ IN +RM
Sbjct: 276 LNGIKIIGSI-----VGTRKDLQEALQ-FAAEGKVKTIIEVQPLEKINEVFDRM 323
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 29.5 bits (67), Expect = 0.15
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 19 LKGLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAIN---ERM 69
LKG+T GS+ G ++ L+ +L F+ + + + LD +N R+
Sbjct: 278 LKGITIRGSI-----VGTRSDLQESLD-FAAHGDVKATVSTAKLDDVNDVFGRL 325
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.6 bits (63), Expect = 0.28
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 31 GALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAINERMPPRKDAPPTPSPVTED 85
G S GK+ + LQ P + A G+D++ E MP + + D
Sbjct: 10 GGSSAGKSGIVRCLQSVLPEPWL-----AFGVDSLIEAMPLKMQSAEGGIEFDAD 59
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 28.7 bits (65), Expect = 0.32
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 19 LKGLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAIN---ERM 69
+K ++ GS G + + AL F + S + GL + E+M
Sbjct: 285 VKSISIVGSY-----VGNRADTREALD-FFARGLVKSPIKVVGLSTLPEIYEKM 332
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 26.2 bits (58), Expect = 1.9
Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
Query: 19 LKGLTPTGSLPLGALSGGKTSLKNALQGFSPNHKITSFAEAKGLDAINERMPPRKDAP-- 76
L + + + PL LS S Q S + K + M
Sbjct: 9 LSSTSTSTTTPLLLLSKPFLSPSAKSQ-LSHSKPFNFPRTLKPISYYKPPMANILSKLGF 67
Query: 77 --PTPSPVTEDKPPPSLPKDPPPSSNT 101
+P P T D P P D P+
Sbjct: 68 GTRSPDPSTMDPTIPQGPDDDLPAPGQ 94
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 25.7 bits (57), Expect = 2.4
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 3 FTNNLSPVEESESVLQLKGLTPTG 26
N + S ++L+G++
Sbjct: 77 LNYNPPKDDGSTYKIELEGISVMV 100
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 26.0 bits (58), Expect = 2.6
Identities = 10/38 (26%), Positives = 11/38 (28%)
Query: 70 PPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNSHSSS 107
P D P P T P LP P +S
Sbjct: 6 PAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTS 43
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 26.2 bits (58), Expect = 2.6
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 71 PRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNSHSSS 107
+ +PP P P P P P P P +
Sbjct: 5 SQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQ 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 3.7
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 11/36 (30%)
Query: 37 KTSLK---NALQGFSPNHKITSFAEAKGLDAINERM 69
K +LK +L+ ++ + A L AI M
Sbjct: 19 KQALKKLQASLKLYADD-------SAPAL-AIKATM 46
>2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus,
high-throughput assay, protein; HET: PGE; 1.85A {Dengue
virus} PDB: 2j7w_A*
Length = 635
Score = 25.8 bits (56), Expect = 3.7
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 59 AKGLDAINERMPPRKDAPP-TPSPVTED 85
A L A+N+ RKD P PS D
Sbjct: 410 ANALLALNDMGKVRKDIPQWQPSKGWHD 437
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 25.5 bits (56), Expect = 4.2
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 25 TGSLPLGALSGGKTSLKNALQGF-SPNHKITS 55
T S GKT+ NA+ F P+ K+ S
Sbjct: 269 TAS--------GKTTTLNAIMMFIPPDAKVVS 292
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug
gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 25.1 bits (54), Expect = 4.9
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 31 GALSGGKTSLKNALQGFSPNHKITSFAE 58
G GKT+ L I E
Sbjct: 11 GPHGMGKTTTTQLLVALGSRDDIVYVPE 38
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 25.2 bits (54), Expect = 5.5
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 70 PPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNSHSSS 107
A P + + ++ + P P + + S
Sbjct: 38 AASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGG 75
Score = 24.4 bits (52), Expect = 9.2
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 69 MPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNSHSSS 107
+ + PP PS + P S +S +S
Sbjct: 26 LQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASP 64
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 25.0 bits (55), Expect = 5.8
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 8/27 (29%)
Query: 25 TGSLPLGALSGGKTSLKNALQGFSPNH 51
TGS GKT+ ++ F P
Sbjct: 180 TGS--------GKTTYIKSIMEFIPKE 198
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 25.0 bits (55), Expect = 6.2
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 8/27 (29%)
Query: 25 TGSLPLGALSGGKTSLKNALQGFSPNH 51
TGS GKT+L AL P
Sbjct: 184 TGS--------GKTTLMKALMQEIPFD 202
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 24.8 bits (53), Expect = 7.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 66 NERMPPRKDAPPTPSPVTEDKPPPSLPKD 94
E++P K PPTPS E K P
Sbjct: 34 EEKLPREKLNPPTPSIYLESKRDAFSPVL 62
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine,
iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter
sphaeroides}
Length = 522
Score = 24.7 bits (54), Expect = 7.7
Identities = 5/25 (20%), Positives = 6/25 (24%)
Query: 62 LDAINERMPPRKDAPPTPSPVTEDK 86
D N + P P D
Sbjct: 188 FDTENRKPAAPDLLRPRPLRFEPDA 212
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 24.4 bits (53), Expect = 7.8
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 73 KDAPPTPSPVTEDKPPPSLPKDPPPS 98
K A + P +PPP+
Sbjct: 150 KSAASCSRDEEQFLSPAPATPNPPPA 175
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 24.5 bits (53), Expect = 8.0
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 54 TSFAEAKGLDAINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNT 101
+ + + R D S + P P + P SNT
Sbjct: 271 AQYKDESWVRKFASGAQARHDGV---STLQMPSDTPQHPAETPEHSNT 315
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 24.5 bits (53), Expect = 8.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 71 PRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTN 102
P + P P P +P SL ++P P+S+ +
Sbjct: 304 PDPEPSPEPEPKPSLEPNTSLEREPRPNSSPS 335
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 24.5 bits (53), Expect = 9.8
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 74 DAPPTPSPVTEDKPPPSLPKDPPPSS 99
D P E+ P + P +P +
Sbjct: 545 DMTPFYLDSDEELPTYTEPAEPQCEA 570
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.303 0.125 0.356
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,554,703
Number of extensions: 83150
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 117
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 51 (24.0 bits)