RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15401
         (107 letters)



>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
           subunit) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 473

 Score =  100 bits (249), Expect = 9e-27
 Identities = 49/72 (68%), Positives = 54/72 (75%), Gaps = 10/72 (13%)

Query: 11  EESESVLQLKGLTPTGSLPLGALSGGKTSLKNA----------LQGFSPNHKITSFAEAK 60
           EESESVL LKGLTPTG LP G LSGGK +L++A          ++GFSP HKITSF EAK
Sbjct: 402 EESESVLTLKGLTPTGMLPSGVLSGGKQTLQSATVEAIEADEAIKGFSPQHKITSFEEAK 461

Query: 61  GLDAINERMPPR 72
           GLD INERMPPR
Sbjct: 462 GLDRINERMPPR 473


>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 182

 Score = 27.3 bits (59), Expect = 0.31
 Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 29 PLGALSGGKTSLKNALQGFSPNHKITSFA 57
          P      GK+++   L+   PN   +  A
Sbjct: 10 PSAV---GKSTVVRCLRERIPNLHFSVSA 35


>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
           {Pseudomonas putida [TaxId: 303]}
          Length = 160

 Score = 26.8 bits (58), Expect = 0.43
 Identities = 4/20 (20%), Positives = 7/20 (35%)

Query: 62  LDAINERMPPRKDAPPTPSP 81
             A+   +       PT +P
Sbjct: 141 ASALANLVEESSRQLPTAAP 160


>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
          synthase {Escherichia coli [TaxId: 562]}
          Length = 216

 Score = 25.4 bits (54), Expect = 1.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 27 SLPLGALSGGKTSLKNALQG 46
          +L L AL+ GKT L N L  
Sbjct: 4  ALLLAALAHGKTVLTNLLDS 23


>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
          synthase {Escherichia coli [TaxId: 562]}
          Length = 427

 Score = 24.9 bits (53), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 27 SLPLGALSGGKTSLKNALQG 46
          +L L AL+ GKT L N L  
Sbjct: 28 ALLLAALAHGKTVLTNLLDS 47


>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 299

 Score = 24.8 bits (53), Expect = 2.6
 Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 4/37 (10%)

Query: 16 VLQLKGLTPTGSLP----LGALSGGKTSLKNALQGFS 48
               G      LP    +G  S GK+S+     G  
Sbjct: 14 AFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50


>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
          synthase {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 427

 Score = 24.4 bits (52), Expect = 3.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 27 SLPLGALSGGKTSLKNALQG 46
          S+  G+L+ G+T + + L+G
Sbjct: 26 SIIFGSLAEGETKVYDILRG 45


>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
          domain {Thermosynechococcus elongatus bp-1 [TaxId:
          197221]}
          Length = 106

 Score = 23.5 bits (51), Expect = 4.1
 Identities = 4/19 (21%), Positives = 11/19 (57%)

Query: 2  NFTNNLSPVEESESVLQLK 20
           F   +SP ++ + + +L+
Sbjct: 4  FFFRRMSPADKRKLLDELR 22


>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
           {Physarum polycephalum [TaxId: 5791]}
          Length = 342

 Score = 23.7 bits (51), Expect = 5.5
 Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 64  AINERMPPRKDAPPTPSPVTEDKPPPSLPKDPPPSSNTNSHSSS 107
           AIN  + P K   P   P   D PP     D   + + N     
Sbjct: 21  AINSHLQPAKPKVPQKKPSKWD-PPAEFKVDLSTAVSYNDIGDI 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.303    0.125    0.356 

Gapped
Lambda     K      H
   0.267   0.0468    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,771
Number of extensions: 15245
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 17
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 47 (22.5 bits)