BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15403
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/417 (47%), Positives = 256/417 (61%), Gaps = 98/417 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++PGL+HFCEHMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 54 GSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 113
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+CPLFDAS DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 114 HEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 173
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 174 FSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDL------- 226
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 227 -------------------------TNLVVKLFSEV-----------------ENKNVPL 244
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 245 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQYYKSN---------------- 288
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 289 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 315
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLE 450
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F E
Sbjct: 316 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQE 372
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EPCFN LRTK
Sbjct: 759 QSTSENMFLELFCQIISEPCFNTLRTK 785
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/417 (47%), Positives = 256/417 (61%), Gaps = 98/417 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++PGL+HFCEHMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 95 GSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 154
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+CPLFDAS DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 155 HEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 214
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 215 FSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDL------- 267
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 268 -------------------------TNLVVKLFSEV-----------------ENKNVPL 285
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 286 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQYYKSN---------------- 329
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 330 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 356
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLE 450
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F E
Sbjct: 357 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQE 413
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EPCFN LRTK
Sbjct: 800 QSTSENMFLELFCQIISEPCFNTLRTK 826
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/417 (47%), Positives = 255/417 (61%), Gaps = 98/417 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++PGL+HFC HMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 95 GSLSDPPNIPGLSHFCFHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 154
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+CPLFDAS DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 155 HEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 214
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 215 FSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDL------- 267
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 268 -------------------------TNLVVKLFSEV-----------------ENKNVPL 285
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 286 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQYYKSN---------------- 329
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 330 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 356
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLE 450
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F E
Sbjct: 357 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQE 413
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EPCFN LRTK
Sbjct: 800 QSTSENMFLELFCQIISEPCFNTLRTK 826
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/417 (47%), Positives = 254/417 (60%), Gaps = 98/417 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++ GL+HFCEHMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 66 GSLSDPPNIAGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 125
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+CPLFD S DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 126 HEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 185
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 186 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCVLGRESLDDL------- 238
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 239 -------------------------TNLVVKLFSEV-----------------ENKNVPL 256
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 257 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSN---------------- 300
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 301 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 327
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLE 450
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F E
Sbjct: 328 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQE 384
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EPCFN LRTK
Sbjct: 771 QSTSENMFLELFCQIISEPCFNTLRTK 797
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/417 (46%), Positives = 254/417 (60%), Gaps = 98/417 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++ GL+HFC+HMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 66 GSLSDPPNIAGLSHFCQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 125
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+CPLFD S DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 126 HEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 185
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 186 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCVLGRESLDDL------- 238
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 239 -------------------------TNLVVKLFSEV-----------------ENKNVPL 256
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 257 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSN---------------- 300
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 301 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 327
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLE 450
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F E
Sbjct: 328 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQE 384
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EPCFN LRTK
Sbjct: 771 QSTSENMFLELFCQIISEPCFNTLRTK 797
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/418 (46%), Positives = 255/418 (61%), Gaps = 98/418 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++ GL+HF +HMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 66 GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 125
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+ PLFD S+ DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 126 HEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 185
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 186 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDL------- 238
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 239 -------------------------TNLVVKLFSEV-----------------ENKNVPL 256
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 257 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSN---------------- 300
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 301 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 327
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLEL 451
N+LVGG ++GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F EL
Sbjct: 328 NTLVGGQKAGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 385
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EP FN LRTK
Sbjct: 771 QSTSENMFLELFAQIISEPAFNTLRTK 797
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 254/418 (60%), Gaps = 98/418 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++ GL+HF EHMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 66 GSLSDPPNIAGLSHFLEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 125
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+ PLFD S+ DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 126 HEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 185
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 186 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDL------- 238
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 239 -------------------------TNLVVKLFSEV-----------------ENKNVPL 256
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 257 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSN---------------- 300
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 301 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 327
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLEL 451
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F EL
Sbjct: 328 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 385
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EP FN LRTK
Sbjct: 771 QSTSENMFLELFAQIISEPAFNTLRTK 797
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/418 (46%), Positives = 254/418 (60%), Gaps = 98/418 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++ GL+HF +HMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 66 GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 125
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+ PLFD S+ DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 126 HEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 185
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 186 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDL------- 238
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 239 -------------------------TNLVVKLFSEV-----------------ENKNVPL 256
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 257 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSN---------------- 300
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 301 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 327
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLEL 451
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F EL
Sbjct: 328 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 385
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EP FN LRTK
Sbjct: 771 QSTSENMFLELFAQIISEPAFNTLRTK 797
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/418 (46%), Positives = 254/418 (60%), Gaps = 98/418 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++ GL+HF +HMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 66 GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 125
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+ PLFD S+ DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 126 HEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 185
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 186 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDL------- 238
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 239 -------------------------TNLVVKLFSEV-----------------ENKNVPL 256
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 257 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSN---------------- 300
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 301 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 327
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLEL 451
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F EL
Sbjct: 328 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 385
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EP FN LRTK
Sbjct: 771 QSTSENMFLELFAQIISEPAFNTLRTK 797
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/418 (46%), Positives = 254/418 (60%), Gaps = 98/418 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++ GL+HF +HMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 53 GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 112
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+ PLFD S+ DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 113 HEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 172
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 173 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDL------- 225
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 226 -------------------------TNLVVKLFSEV-----------------ENKNVPL 243
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 244 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSN---------------- 287
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 288 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 314
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLEL 451
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F EL
Sbjct: 315 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 372
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EP FN LRTK
Sbjct: 758 QSTSENMFLELFAQIISEPAFNTLRTK 784
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/418 (46%), Positives = 254/418 (60%), Gaps = 98/418 (23%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++ GL+HF +HMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 95 GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 154
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+ PLFD S+ DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 155 HEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 214
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L
Sbjct: 215 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDL------- 267
Query: 214 XXXXXXXXXSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
T V +V +NKNV
Sbjct: 268 -------------------------TNLVVKLFSEV-----------------ENKNVPL 285
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
PE+ HP+ ++ LK + P+KD+R+L VTFPIPDLQ+ +K N
Sbjct: 286 PEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSN---------------- 329
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 330 ---------------------------------PGHYLGHLIGHEGPGSLLSELKSKGWV 356
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLEL 451
N+LVGG + GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F EL
Sbjct: 357 NTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 414
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 441 QGPQEWIFLELFVQIIHEPCFNILRTK 467
Q E +FLELF QII EP FN LRTK
Sbjct: 800 QSTSENMFLELFAQIISEPAFNTLRTK 826
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 93/196 (47%), Gaps = 3/196 (1%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G L DP+ GLAH+ EHM MG++ YP + ++L H G NA T+ T ++ EV
Sbjct: 52 GSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVE 111
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
D L +D + PL D +RE NAVN+E D R+ Q+ T +P H
Sbjct: 112 NDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHP 171
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAXXX 213
++F GN ETL P G V+ L FH K+YS+N+M I + L EL K A
Sbjct: 172 GSKFSGGNLETLSDKP---GNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADT 228
Query: 214 XXXXXXXXXSTPEWTT 229
PE T
Sbjct: 229 FGRVPNKESKKPEITV 244
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 7/153 (4%)
Query: 306 PIPDLQEQHKK------NKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDL 359
P+P+L + NK PE T Q + P + L V F I +
Sbjct: 217 PLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNN 276
Query: 360 QEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSGAKG-FAFFTVTVDLTL 418
+ +S D +++LIG+ PG+L L+++G + G ++ LT
Sbjct: 277 SAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTD 336
Query: 419 DGINHADDIVELLFQYIKLIHDQGPQEWIFLEL 451
G+ + D +V +F Y+ L+ ++G + F EL
Sbjct: 337 KGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL 369
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDI 103
G++HF EHM F GT T A+ E +F G NA+TS ++T Y+ +V DH + +D
Sbjct: 43 GISHFLEHMFFKGTNTRSAQ-EIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDT 101
Query: 104 FSKFFICPLFDASSTDREVNAVNSEHEK--NIPNDAWRLDQLEKATCDPKHDYNRFGTGN 161
S F F ++E V E + + P+D D L AT KH G
Sbjct: 102 LSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVH-DLLSSATY-GKHSLGYPILGT 159
Query: 162 KETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILG 199
ETL + + L + +++Y+ + + +++ G
Sbjct: 160 VETLNSFNEGM-------LRHYMDRFYTGDYVVISVAG 190
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDI 103
G AHF EH+ F GT+ P + + + NAYTS ++T Y+ + + + K +DI
Sbjct: 48 GTAHFLEHLAFKGTQNRPQQG-IELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDI 106
Query: 104 FSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQL-EKATCDPKHD--YNRFGTG 160
S + D S+ +RE + + E E+ +D++ ++ D H+ Y G
Sbjct: 107 LSDILTKSVLDNSAIERERDVIIRESEE--------VDKMYDEVVFDHLHEITYKDQPLG 158
Query: 161 NKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYA 210
+ L I K I R +L + K Y + M LA G ++L +YA
Sbjct: 159 -RTILGPIKNIKSI-TRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYA 206
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDI 103
G AHF +H+ F GT+ P + + + NAYTS ++T Y+ + + + K +DI
Sbjct: 48 GTAHFLQHLAFKGTQNRPQQG-IELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDI 106
Query: 104 FSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQL-EKATCDPKHD--YNRFGTG 160
S + D S+ +RE + + E E+ +D++ ++ D H+ Y G
Sbjct: 107 LSDILTKSVLDNSAIERERDVIIRESEE--------VDKMYDEVVFDHLHEITYKDQPLG 158
Query: 161 NKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYA 210
+ L I K I R +L + K Y + M LA G ++L +YA
Sbjct: 159 -RTILGPIKNIKSI-TRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYA 206
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 23/174 (13%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G + + G+AH EHM+F GT+ E++K ++ G NA+T+ D+T Y+ +V
Sbjct: 38 GSMDETTGTTGVAHALEHMMFKGTKDV-GPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVP 96
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEK-------- 145
L + + + + D +E+ + E WR D +
Sbjct: 97 SSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERR-------WRTDDKPRSKAYEALM 149
Query: 146 ATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILG 199
A H Y G ++ + DVR+ ++ +WY N + ++G
Sbjct: 150 AASYVAHPYRVPVIGWMNDIQNMTAQ---DVRD----WYKRWYGPNNATVVVVG 196
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 23/174 (13%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G + + G+AH EHM+F GT+ E++K ++ G NA+T+ D+T Y+ +V
Sbjct: 38 GSMDETTGTTGVAHALEHMMFKGTKDV-GPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVP 96
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEK-------- 145
L + + + + D +E+ + E WR D +
Sbjct: 97 SSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERR-------WRTDDKPRSKAYEALM 149
Query: 146 ATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILG 199
A H Y G ++ + DVR+ ++ +WY N + ++G
Sbjct: 150 AASYVAHPYRVPVIGWMNDIQNMTAQ---DVRD----WYKRWYGPNNATVVVVG 196
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDI 103
G +F EH+ F GT+ P +N K + + NAY+S +HT Y+ + + K +++
Sbjct: 54 GAGYFLEHLAFKGTKNRP-QNALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVEL 112
Query: 104 FSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKE 163
+ + S ++E + + E ++N + + + + H GTG +
Sbjct: 113 LADIVQNCSLEDSQIEKERDVIVRELQENDTS-------MREVVFNYLHATAFQGTGLAQ 165
Query: 164 TLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILG 199
++E ++ R +L ++ + Y++ M LA G
Sbjct: 166 SVEGPSENIRKLSRADLTEYLSTHYTAPRMVLAAAG 201
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDI 103
G +F EH+ F GT+ P N K + + NAY++ +HT Y+ + L K +++
Sbjct: 88 GAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 146
Query: 104 FSKFFI-CPLFDASSTDREVNAVNSEHEKN 132
+ C L D S ++E + + E ++N
Sbjct: 147 LADIVQNCSLED-SQIEKERDVILQELQEN 175
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDI 103
G +F EH+ F GT+ P N K + + NAY++ +HT Y+ + L K +++
Sbjct: 54 GAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 112
Query: 104 FSKFFI-CPLFDASSTDREVNAVNSEHEKN 132
+ C L D S ++E + + E ++N
Sbjct: 113 LADIVQNCSLED-SQIEKERDVILQELQEN 141
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDI 103
G +F EH+ F GT+ P N K + + NAY++ +HT Y+ + L K +++
Sbjct: 54 GAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 112
Query: 104 FSKFFI-CPLFDASSTDREVNAVNSEHEKN 132
+ C L D S ++E + + E ++N
Sbjct: 113 LADIVQNCSLED-SQIEKERDVILQELQEN 141
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 8/163 (4%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDI 103
G +F EH+ F GT+ P + K + + N YTS + T ++ + + K +++
Sbjct: 54 GAGYFVEHLAFKGTKKRPCA-AFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVEL 112
Query: 104 FSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKE 163
+ + S ++E + E K + ND + T D H GT
Sbjct: 113 LADVVQNCALEESQIEKERGVILQEL-KEMDND------MTNVTFDYLHATAFQGTALAR 165
Query: 164 TLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDEL 206
T+E ++ R +L + + + + M LA G S EL
Sbjct: 166 TVEGTTENIKHLTRADLASYIDTHFKAPRMVLAAAGGISHKEL 208
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G + K+ G++HF EH +F G E A N+ NA+TS + T Y+ V
Sbjct: 33 GARDETKEESGVSHFLEHXVFKGPEDXDA-LAVNRAFDRXGAQYNAFTSEEATVYYGAVL 91
Query: 94 PDHLEKTLDIFSKFF 108
P+ L +F+K
Sbjct: 92 PEFAYDLLGLFAKLL 106
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 39 PKDLPGLAHFCEHMLFMGTETYPAENEYNKFL--SEHSGYSNAYTSADHTNY 88
PKD G+ H +H + G+ YP + + + L S H+ + NA+T D T Y
Sbjct: 69 PKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHT-FLNAFTYPDRTCY 119
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 19/103 (18%)
Query: 356 IPDLQEQHKSGPDNYLSHLIGHEGPGSLL----SELRRRGWCNSLV--GGPRSGAKGFA- 408
+ D +H PD Y GH G+L ++LR G+ + G PR G + FA
Sbjct: 128 VEDAVREH---PD-YRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAE 183
Query: 409 FFTVTVDLTLDGINHADDIVELL----FQYIKLIHDQGPQEWI 447
F TV TL I H +DIV L F Y P+ WI
Sbjct: 184 FLTVQTGGTLYRITHTNDIVPRLPPREFGY----SHSSPEYWI 222
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 19/103 (18%)
Query: 356 IPDLQEQHKSGPDNYLSHLIGHEGPGSLL----SELRRRGWCNSLV--GGPRSGAKGFA- 408
+ D +H PD Y GH G+L ++LR G+ + G PR G + FA
Sbjct: 128 VEDAVREH---PD-YRVVFTGHALGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAE 183
Query: 409 FFTVTVDLTLDGINHADDIVELL----FQYIKLIHDQGPQEWI 447
F TV TL I H +DIV L F Y P+ WI
Sbjct: 184 FLTVQTGGTLYRITHTNDIVPRLPPREFGY----SHSSPEYWI 222
>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe
pdb|3OVP|B Chain B, Crystal Structure Of Hrpe
pdb|3OVQ|A Chain A, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVQ|B Chain B, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVR|A Chain A, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
pdb|3OVR|B Chain B, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
Length = 228
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 350 LLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSGAKGFAF 409
++V+ P ++ +G + Y HL E PG+L+ ++R G L P + + A
Sbjct: 71 MMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130
Query: 410 FTVTVDLTL 418
+ +D+ L
Sbjct: 131 WANQIDMAL 139
>pdb|2RF7|A Chain A, Crystal Structure Of The Escherichia Coli Nrfa Mutant
Q263e
pdb|2RF7|B Chain B, Crystal Structure Of The Escherichia Coli Nrfa Mutant
Q263e
pdb|2RF7|C Chain C, Crystal Structure Of The Escherichia Coli Nrfa Mutant
Q263e
pdb|2RF7|D Chain D, Crystal Structure Of The Escherichia Coli Nrfa Mutant
Q263e
Length = 441
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 227 WTTHPYGKDQLKTRGYVTPVKDVRSLLVT 255
W +P+ +D K RG+ V DVR L T
Sbjct: 43 WAGYPFSRDYNKPRGHAFAVTDVRETLRT 71
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 276 WTTHPYGKDQLKTRGYVTPVKDVRSLLVT 304
W +P+ +D K RG+ V DVR L T
Sbjct: 43 WAGYPFSRDYNKPRGHAFAVTDVRETLRT 71
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 325 WTTHPYGKDQLKTRGYVTPVKDVRSLLVT 353
W +P+ +D K RG+ V DVR L T
Sbjct: 43 WAGYPFSRDYNKPRGHAFAVTDVRETLRT 71
>pdb|1GU6|A Chain A, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|1GU6|C Chain C, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|1GU6|E Chain E, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|1GU6|G Chain G, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|2RDZ|A Chain A, High Resolution Crystal Structure Of The Escherichia Coli
Cytochrome C Nitrite Reductase.
pdb|2RDZ|B Chain B, High Resolution Crystal Structure Of The Escherichia Coli
Cytochrome C Nitrite Reductase.
pdb|2RDZ|C Chain C, High Resolution Crystal Structure Of The Escherichia Coli
Cytochrome C Nitrite Reductase.
pdb|2RDZ|D Chain D, High Resolution Crystal Structure Of The Escherichia Coli
Cytochrome C Nitrite Reductase.
pdb|3L1T|A Chain A, E. Coli Nrfa Sulfite Ocmplex
pdb|3L1T|B Chain B, E. Coli Nrfa Sulfite Ocmplex
pdb|3L1T|C Chain C, E. Coli Nrfa Sulfite Ocmplex
pdb|3L1T|D Chain D, E. Coli Nrfa Sulfite Ocmplex
pdb|3TOR|A Chain A, Crystal Structure Of Escherichia Coli Nrfa With Europium
Bound
pdb|3TOR|B Chain B, Crystal Structure Of Escherichia Coli Nrfa With Europium
Bound
pdb|3TOR|C Chain C, Crystal Structure Of Escherichia Coli Nrfa With Europium
Bound
pdb|3TOR|D Chain D, Crystal Structure Of Escherichia Coli Nrfa With Europium
Bound
Length = 452
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 227 WTTHPYGKDQLKTRGYVTPVKDVRSLLVT 255
W +P+ +D K RG+ V DVR L T
Sbjct: 53 WAGYPFSRDYNKPRGHAFAVTDVRETLRT 81
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 276 WTTHPYGKDQLKTRGYVTPVKDVRSLLVT 304
W +P+ +D K RG+ V DVR L T
Sbjct: 53 WAGYPFSRDYNKPRGHAFAVTDVRETLRT 81
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 325 WTTHPYGKDQLKTRGYVTPVKDVRSLLVT 353
W +P+ +D K RG+ V DVR L T
Sbjct: 53 WAGYPFSRDYNKPRGHAFAVTDVRETLRT 81
>pdb|2NRJ|A Chain A, Crystal Structure Of Hemolysin Binding Component From
Bacillus Cereus
Length = 346
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 140 LDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDV 176
+++L K HD FG+ NKE L++I K++G DV
Sbjct: 143 IEELTKLRDSIGHDVRAFGS-NKELLQSILKNQGADV 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,898,750
Number of Sequences: 62578
Number of extensions: 704785
Number of successful extensions: 1645
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1554
Number of HSP's gapped (non-prelim): 78
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)