Query psy15403
Match_columns 471
No_of_seqs 149 out of 1605
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 20:07:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02110 PQQ_syn_pqqF coenzym 100.0 1.8E-44 3.8E-49 391.4 38.7 345 13-465 3-359 (696)
2 PRK15101 protease3; Provisiona 100.0 3.1E-44 6.7E-49 410.9 39.1 349 13-462 47-403 (961)
3 COG0612 PqqL Predicted Zn-depe 100.0 1.3E-42 2.9E-47 364.9 30.1 347 10-465 17-374 (438)
4 COG1025 Ptr Secreted/periplasm 100.0 9.5E-42 2.1E-46 367.9 34.0 353 13-468 27-388 (937)
5 KOG0959|consensus 100.0 9.1E-42 2E-46 373.8 33.5 340 13-454 31-379 (974)
6 KOG0960|consensus 100.0 3.4E-36 7.3E-41 295.2 26.5 332 13-458 37-385 (467)
7 PTZ00432 falcilysin; Provision 100.0 5.1E-35 1.1E-39 335.1 31.2 337 11-455 93-496 (1119)
8 KOG2067|consensus 100.0 8.1E-35 1.8E-39 285.8 23.0 339 9-457 24-380 (472)
9 COG1026 Predicted Zn-dependent 99.9 2.3E-25 5E-30 242.2 25.9 338 14-455 26-383 (978)
10 KOG2019|consensus 99.9 4.1E-23 8.8E-28 214.3 21.2 342 10-455 54-419 (998)
11 PRK15101 protease3; Provisiona 99.9 6.5E-22 1.4E-26 227.0 26.2 328 12-461 525-864 (961)
12 KOG2583|consensus 99.9 1E-19 2.2E-24 180.1 30.3 324 9-455 22-360 (429)
13 PF05193 Peptidase_M16_C: Pept 99.9 2.8E-21 6E-26 176.4 17.2 176 177-455 4-184 (184)
14 KOG0961|consensus 99.9 2.9E-20 6.3E-25 193.0 20.8 343 14-464 25-385 (1022)
15 PF00675 Peptidase_M16: Insuli 99.8 1.4E-19 3E-24 162.3 12.3 129 32-161 20-148 (149)
16 COG1026 Predicted Zn-dependent 99.1 7.2E-09 1.6E-13 114.4 22.9 314 36-457 559-892 (978)
17 PTZ00432 falcilysin; Provision 98.9 1.8E-07 3.8E-12 108.9 24.7 312 44-458 699-1039(1119)
18 KOG2019|consensus 98.8 3.6E-07 7.7E-12 96.8 20.5 329 17-457 568-922 (998)
19 KOG0959|consensus 98.7 4.8E-06 1E-10 93.5 25.3 161 41-217 550-711 (974)
20 COG1025 Ptr Secreted/periplasm 98.5 1.8E-05 3.8E-10 87.9 21.7 140 72-221 568-708 (937)
21 KOG0961|consensus 97.5 0.0023 5E-08 68.6 15.4 276 82-457 632-916 (1022)
22 PF03410 Peptidase_M44: Protei 97.3 0.002 4.4E-08 66.5 11.6 181 12-222 1-194 (590)
23 PHA03081 putative metalloprote 97.0 0.005 1.1E-07 63.7 10.2 180 13-222 2-194 (595)
24 COG0612 PqqL Predicted Zn-depe 94.1 1.2 2.6E-05 46.9 14.6 130 65-203 292-433 (438)
25 PF08367 M16C_assoc: Peptidase 93.8 0.5 1.1E-05 46.0 10.2 90 40-130 106-207 (248)
26 KOG2067|consensus 90.5 1.4 3.1E-05 45.2 8.9 116 77-202 328-445 (472)
27 PF00675 Peptidase_M16: Insuli 82.9 19 0.00042 31.4 11.1 103 344-460 9-117 (149)
28 KOG0960|consensus 78.4 12 0.00027 38.6 8.9 147 45-201 288-449 (467)
29 PF09851 SHOCT: Short C-termin 66.0 11 0.00023 24.2 3.5 25 433-457 6-31 (31)
30 TIGR02110 PQQ_syn_pqqF coenzym 62.9 17 0.00036 41.0 6.5 81 346-435 614-695 (696)
31 PRK11512 DNA-binding transcrip 42.0 77 0.0017 27.7 6.2 68 381-455 72-139 (144)
32 PF09186 DUF1949: Domain of un 42.0 1.2E+02 0.0025 21.5 6.2 50 59-108 4-53 (56)
33 PF05193 Peptidase_M16_C: Pept 40.6 1.5E+02 0.0032 25.7 8.0 80 41-125 95-184 (184)
34 PF08367 M16C_assoc: Peptidase 32.3 2.6E+02 0.0057 26.9 8.7 91 343-437 87-186 (248)
35 PRK03573 transcriptional regul 32.2 1.4E+02 0.0031 25.8 6.3 67 381-455 64-130 (144)
36 cd04910 ACT_AK-Ectoine_1 ACT d 25.9 1.9E+02 0.0042 22.4 5.2 52 56-109 13-65 (71)
37 PF06576 DUF1133: Protein of u 24.7 95 0.0021 28.4 3.7 30 429-458 58-87 (176)
38 smart00529 HTH_DTXR Helix-turn 22.5 3.5E+02 0.0076 21.3 6.5 65 381-458 17-82 (96)
39 PRK10870 transcriptional repre 20.7 2.7E+02 0.0059 25.3 6.1 67 381-455 89-155 (176)
No 1
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.8e-44 Score=391.44 Aligned_cols=345 Identities=22% Similarity=0.307 Sum_probs=282.9
Q ss_pred eecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccce
Q psy15403 13 TWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADH 85 (471)
Q Consensus 13 ~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~ 85 (471)
.-++|||+|.++..++... ++|+++|+.+.+|++||++||+|+||++++..++|.+.++.+|+++|++|+.|+
T Consensus 3 ~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~ 82 (696)
T TIGR02110 3 ITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERT 82 (696)
T ss_pred EEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCe
Confidence 3578999996555444332 999999999999999999999999999999844799999999999999999999
Q ss_pred EEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhh
Q psy15403 86 TNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETL 165 (471)
Q Consensus 86 t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I 165 (471)
|.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.+.+.+|++|||+++..|+.++|
T Consensus 83 T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~esL 162 (696)
T TIGR02110 83 TAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDSL 162 (696)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccceecc
Q psy15403 166 ETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTP 245 (471)
Q Consensus 166 ~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (471)
..++. .+.++|++||++||+|+||+|+|+||++.++++++++++|+.|+.+..+.+....+...
T Consensus 163 ~~it~----~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~------------ 226 (696)
T TIGR02110 163 ALPNT----AFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLR------------ 226 (696)
T ss_pred hCccc----chHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC------------
Confidence 87531 12899999999999999999999999999999999999999998654322111000000
Q ss_pred CccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCCC
Q psy15403 246 VKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEW 325 (471)
Q Consensus 246 ~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (471)
T Consensus 227 -------------------------------------------------------------------------------- 226 (696)
T TIGR02110 227 -------------------------------------------------------------------------------- 226 (696)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeecCCCCC
Q psy15403 326 TTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSGAK 405 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~~~~~~ 405 (471)
.+..... ..+..++.+.|..|..... +..++.+++.+||++++|+|+.+||++||+|++++.......
T Consensus 227 ---------~~~~~~~--~~~~~q~~l~~~~p~~~~~-d~~al~lL~~iLg~g~sSrL~~~LRe~GLaysV~s~~~~~~~ 294 (696)
T TIGR02110 227 ---------FDRLTLA--GGSEPRLWLLFALAGLPAT-ARDNVTLLCEFLQDEAPGGLLAQLRERGLAESVAATWLYQDA 294 (696)
T ss_pred ---------CceeEEE--ecCcceEEEEEeecCCCCC-ChHHHHHHHHHhCCCcchHHHHHHHHCCCEEEEEEeccccCC
Confidence 0000011 1123456666666543221 223689999999999999999999999999999986643334
Q ss_pred CeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHhcc---cchhhhhh
Q psy15403 406 GFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQ--GPQEWIFLELFVQIIH---EPCFNILR 465 (471)
Q Consensus 406 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~~~~~~~~k~~~i~---~~~~~~~~ 465 (471)
+.+.|.|++.+++++.++++++++.++++|++|+++ +++.++++++|..=.. ......+|
T Consensus 295 g~~lf~I~~~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~~~~~~~~~~l~~~r 359 (696)
T TIGR02110 295 GQALLALEFSARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQRRFQTLALSPLAQLR 359 (696)
T ss_pred CCcEEEEEEEEcCCCccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhhcccChHHHHh
Confidence 456999999997655578999999999999999999 8999999999887433 44444444
No 2
>PRK15101 protease3; Provisional
Probab=100.00 E-value=3.1e-44 Score=410.86 Aligned_cols=349 Identities=31% Similarity=0.477 Sum_probs=298.4
Q ss_pred eecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccce
Q psy15403 13 TWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADH 85 (471)
Q Consensus 13 ~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~ 85 (471)
.-++|||+|.++..++... ++|+++||.+.+|+|||++||+|.||++++..+++.++++.+|+++|++|+.++
T Consensus 47 ~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~ 126 (961)
T PRK15101 47 IRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYR 126 (961)
T ss_pred EEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceECCCc
Confidence 4589999996555443222 999999999999999999999999999998656899999999999999999999
Q ss_pred EEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhh
Q psy15403 86 TNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETL 165 (471)
Q Consensus 86 t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I 165 (471)
|.|++++++++++.+|+++++++.+|.|++++++++++.+.+|++...++|...+.+.+...+|++|||+++..|+.++|
T Consensus 127 T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etl 206 (961)
T PRK15101 127 TAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSGGNLETL 206 (961)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCCCCHHHh
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccceecc
Q psy15403 166 ETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTP 245 (471)
Q Consensus 166 ~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (471)
..++. ..+.++|++||++||+|+||+|+|+|++|.++++++++++|+.|+....+.+....++.
T Consensus 207 ~~~~~---~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~------------- 270 (961)
T PRK15101 207 SDKPG---SKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVV------------- 270 (961)
T ss_pred hcCCc---hHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCC-------------
Confidence 99721 01299999999999999999999999999999999999999999865432111111111
Q ss_pred CccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCCC
Q psy15403 246 VKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEW 325 (471)
Q Consensus 246 ~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (471)
T Consensus 271 -------------------------------------------------------------------------------- 270 (961)
T PRK15101 271 -------------------------------------------------------------------------------- 270 (961)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeecCC-CC
Q psy15403 326 TTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRS-GA 404 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~~~-~~ 404 (471)
.+...+..+...|..++.++.+.|+.|.....++..+..+++.+||+++.++|+..|+++||+|+++++... ..
T Consensus 271 -----~~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~~~~ 345 (961)
T PRK15101 271 -----TDAQKGIIIHYVPAQPRKVLRVEFRIDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADPMVD 345 (961)
T ss_pred -----CHHHcCeEEEEEECCCCcEEEEEEecCCcHHHHhhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeeccccccC
Confidence 111112234445667778899999998765555556789999999999999999999999999999987653 23
Q ss_pred CCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhh
Q psy15403 405 KGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFN 462 (471)
Q Consensus 405 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~ 462 (471)
.+.|.|.|++.+++++.++++++++.++++|+.|+++|+++++++++|+.+...+.+.
T Consensus 346 ~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~ 403 (961)
T PRK15101 346 RNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYP 403 (961)
T ss_pred CCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCC
Confidence 5679999999999988789999999999999999999999999999999988776554
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=1.3e-42 Score=364.85 Aligned_cols=347 Identities=22% Similarity=0.279 Sum_probs=281.2
Q ss_pred CCceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEec
Q psy15403 10 MPSTWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTS 82 (471)
Q Consensus 10 ~~~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~ 82 (471)
+...-++||+++.+...+.... ++|++.|+....|+|||++||+|.|+.+++. .++.+.++..|+.+|++|+
T Consensus 17 ~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~-~~i~~~~~~~G~~~na~ts 95 (438)
T COG0612 17 LQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPS-AELAEAFEKLGGQLNAFTS 95 (438)
T ss_pred ceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCCh-HHHHHHHHHhcCeeecccc
Confidence 4567789999998777765333 9999999999999999999999999999988 4899999999999999999
Q ss_pred cceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCCh
Q psy15403 83 ADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNK 162 (471)
Q Consensus 83 ~d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~ 162 (471)
.++|.|++++.+++++.+|+++++++.+|.|++++|+++|..+++|++...++|..++...+...+|++|||+++..|++
T Consensus 96 ~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~ 175 (438)
T COG0612 96 FDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTE 175 (438)
T ss_pred chhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCH
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccce
Q psy15403 163 ETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGY 242 (471)
Q Consensus 163 e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~ 242 (471)
++|.+++ .++|++||++||+|+||+|+||||+|++++.++++++|+.|+....+......++. ....+..
T Consensus 176 e~I~~it-------~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~---~~~~~~~ 245 (438)
T COG0612 176 ESIEAIT-------REDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPL---GPERVVR 245 (438)
T ss_pred HHHHhCC-------HHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCcccc---CCCceEE
Confidence 9999999 99999999999999999999999999999999999999999972222222221122 1111111
Q ss_pred eccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCC
Q psy15403 243 VTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 322 (471)
Q Consensus 243 ~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (471)
+... .++.+
T Consensus 246 ~~~~-~~~~~---------------------------------------------------------------------- 254 (438)
T COG0612 246 VNDP-EQPDL---------------------------------------------------------------------- 254 (438)
T ss_pred ecCC-CCchh----------------------------------------------------------------------
Confidence 1100 11111
Q ss_pred CCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHH-HcCcccceeeecC
Q psy15403 323 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELR-RRGWCNSLVGGPR 401 (471)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR-~~g~~ys~~~~~~ 401 (471)
.+..+.+.|+.+......++.++.+++.+||++..|+||.++| ++||+|++++...
T Consensus 255 -----------------------~~~~~~~g~~~~~~~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~ 311 (438)
T COG0612 255 -----------------------EQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSD 311 (438)
T ss_pred -----------------------hhhhhhccccCcCcCcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccc
Confidence 1222333333333333345668999999999999999999999 5999999998665
Q ss_pred CCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHhcccchhhhhh
Q psy15403 402 SGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQG---PQEWIFLELFVQIIHEPCFNILR 465 (471)
Q Consensus 402 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~---~~~~~~~~~k~~~i~~~~~~~~~ 465 (471)
. ....+.+.+++.+.+. +.+++.+.+.+++..+++.. +++++++.+|..+++...++..+
T Consensus 312 ~-~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s 374 (438)
T COG0612 312 F-LSDSGLFSIYAGTAPE---NPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDS 374 (438)
T ss_pred c-ccccCCceEEEEecCC---ChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCC
Confidence 3 3556788888888873 44446666666666666654 89999999999998877765443
No 4
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-42 Score=367.90 Aligned_cols=353 Identities=40% Similarity=0.659 Sum_probs=320.5
Q ss_pred eecCCCcEEEEEeccCCCC---------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEecc
Q psy15403 13 TWSPEAMQYKQGYLSDPKD---------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSA 83 (471)
Q Consensus 13 ~~~~nGl~~~v~~~~~~~~---------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~ 83 (471)
.-+||||.+ ++++||.. ++|+..||.+.+|+||++|||+|.|+++||..+.|..+|+..||+.|++|..
T Consensus 27 I~LpNGl~~--LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~T~~ 104 (937)
T COG1025 27 IKLPNGLRA--LLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAG 104 (937)
T ss_pred EECCCCceE--EEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccccCC
Confidence 457899987 88889888 9999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChh
Q psy15403 84 DHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKE 163 (471)
Q Consensus 84 d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e 163 (471)
+.|+|++.+..+.++.+|+.|+++|.+|.|+++.+++|+..+.+|+.....+..+.+.+.....+-++||++++..|+.+
T Consensus 105 ~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~GN~~ 184 (937)
T COG1025 105 ERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGNLE 184 (937)
T ss_pred CceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCccccccccee
Q psy15403 164 TLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYV 243 (471)
Q Consensus 164 ~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
++.... +..+.++|.+||+++|++++|+++|.|+-+.+++.+++.++||.+|......+..+.++
T Consensus 185 TL~~~p---~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~------------ 249 (937)
T COG1025 185 TLSDKP---GLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPV------------ 249 (937)
T ss_pred hhccCC---CchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCC------------
Confidence 998855 33459999999999999999999999999999999999999999997654333222111
Q ss_pred ccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCC
Q psy15403 244 TPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTP 323 (471)
Q Consensus 244 ~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
T Consensus 250 -------------------------------------------------------------------------------- 249 (937)
T COG1025 250 -------------------------------------------------------------------------------- 249 (937)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeecCCC
Q psy15403 324 EWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSG 403 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~~~~ 403 (471)
+......+.+++.|.++...+.|.|++++....+...++++++++||+.++++|...|.++||+-++.++....
T Consensus 250 ------~~d~~t~~ii~i~p~~~~~~L~i~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~~~ 323 (937)
T COG1025 250 ------VTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLDPI 323 (937)
T ss_pred ------CChHHhCceEEeccCCCCceEEEEEEcCCcccccccCCHHHHHHHhccCCCchHHHHHHhccchhhhccccccc
Confidence 23445567888999999999999999999988888889999999999999999999999999999999988765
Q ss_pred CCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhhhhhhhc
Q psy15403 404 AKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNILRTKF 468 (471)
Q Consensus 404 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~~~~~~~ 468 (471)
..++|.|.|++.++.+|.+++++|+.++|++|+.++.+|+..+.|+++.+.+=-.+++...++.|
T Consensus 324 ~~n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~~t~~~ 388 (937)
T COG1025 324 SGNYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPM 388 (937)
T ss_pred cCCcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccccCChH
Confidence 67889999999999999999999999999999999999999999999987776666665554443
No 5
>KOG0959|consensus
Probab=100.00 E-value=9.1e-42 Score=373.82 Aligned_cols=340 Identities=53% Similarity=0.911 Sum_probs=314.2
Q ss_pred eecCCCcEEEEEeccCCCC---------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEecc
Q psy15403 13 TWSPEAMQYKQGYLSDPKD---------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSA 83 (471)
Q Consensus 13 ~~~~nGl~~~v~~~~~~~~---------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~ 83 (471)
.-++|||++ ++++||.. ++|+..||.+.+|||||+|||+|.||++||.++.+..+|.+.|++-||+|..
T Consensus 31 ~~L~Ngl~a--lLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T~~ 108 (974)
T KOG0959|consen 31 IELTNGLRA--LLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYTDS 108 (974)
T ss_pred EEecCCceE--EEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCcccccccc
Confidence 457899986 77778755 9999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChh
Q psy15403 84 DHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKE 163 (471)
Q Consensus 84 d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e 163 (471)
++|.|++.+..+.++.+|+.|++++.+|.|++++.++|+.++..|.....++..+...++.+.+.-++||++++..|+.+
T Consensus 109 e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN~~ 188 (974)
T KOG0959|consen 109 EHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTGNKK 188 (974)
T ss_pred ccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCccccccccee
Q psy15403 164 TLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYV 243 (471)
Q Consensus 164 ~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
+|......+ ++.+.|.+||++||.+++|+++|+|+.+.+.++.++.+.|+.+++...+.+.++.
T Consensus 189 tL~~~p~~~--~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~-------------- 252 (974)
T KOG0959|consen 189 TLLEGPREI--DLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPE-------------- 252 (974)
T ss_pred hhhhccccc--hHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccC--------------
Confidence 999988555 7899999999999999999999999999999999999999988877644332222
Q ss_pred ccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCC
Q psy15403 244 TPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTP 323 (471)
Q Consensus 244 ~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
T Consensus 253 -------------------------------------------------------------------------------- 252 (974)
T KOG0959|consen 253 -------------------------------------------------------------------------------- 252 (974)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeecCCC
Q psy15403 324 EWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSG 403 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~~~~ 403 (471)
.||.+...++.+.+.|+++...+.|.|+.|+....+++.+.+++++++|+.+.|+|+.+||++||+.++.++....
T Consensus 253 ----~p~~~e~~~~~~~v~pik~~~~l~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~~~ 328 (974)
T KOG0959|consen 253 ----PPFLPEELKKLVRVVPIKDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIPEF 328 (974)
T ss_pred ----CCCChHHhCcEEEEEeccccceEEEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCCcc
Confidence 1345666778888889999999999999999999999999999999999999999999999999999999998867
Q ss_pred CCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q psy15403 404 AKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQ 454 (471)
Q Consensus 404 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~ 454 (471)
..+++.|.|.+.++..|.+++++++..++++|+.|++.|+..|+++++...
T Consensus 329 as~~~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~ 379 (974)
T KOG0959|consen 329 ASGYSFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLI 379 (974)
T ss_pred ccccceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHh
Confidence 788999999999999999999999999999999999999999999998543
No 6
>KOG0960|consensus
Probab=100.00 E-value=3.4e-36 Score=295.21 Aligned_cols=332 Identities=18% Similarity=0.161 Sum_probs=276.7
Q ss_pred eecCCCcEEEEEeccCCCC------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccceE
Q psy15403 13 TWSPEAMQYKQGYLSDPKD------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHT 86 (471)
Q Consensus 13 ~~~~nGl~~~v~~~~~~~~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~t 86 (471)
|-++||++|..-....++- ++|+++|.+.+.|.+||++||+|.|+++++. ..++..++..|+.+|++++++.|
T Consensus 37 ttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~-~alElEieniGahLNAytSReqT 115 (467)
T KOG0960|consen 37 TTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQ-AALELEIENIGAHLNAYTSREQT 115 (467)
T ss_pred EEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchh-HHHHHHHHHHHHHhcccccccce
Confidence 6789999986544422222 9999999999999999999999999999998 59999999999999999999999
Q ss_pred EEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhc
Q psy15403 87 NYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLE 166 (471)
Q Consensus 87 ~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~ 166 (471)
.|++++.++++++++++|++++.+..+.+.+|++++..++.|++....+-..+.++.++...|.++|+++.+.|+.+.|.
T Consensus 116 ~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~enI~ 195 (467)
T KOG0960|consen 116 VYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSENIK 195 (467)
T ss_pred eeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhhhhh
Confidence 99999999999999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCC--CCCCCCCCCCcccccccceec
Q psy15403 167 TIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVS--TPEWTTHPYGKDQLKTRGYVT 244 (471)
Q Consensus 167 ~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~ 244 (471)
+|+ .+||++|.+.+|++++|+|+.+|.+++++|.+++++|||.++....+ ++..++..| .+.+..+.+
T Consensus 196 si~-------r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~F---tgsEvR~rd 265 (467)
T KOG0960|consen 196 SIS-------RADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARF---TGSEVRVRD 265 (467)
T ss_pred hhh-------HHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccc---cCceeeecC
Confidence 999 99999999999999999999999999999999999999998753221 111112223 122233333
Q ss_pred cCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCC
Q psy15403 245 PVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPE 324 (471)
Q Consensus 245 ~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (471)
...+-+++
T Consensus 266 d~lP~a~~------------------------------------------------------------------------ 273 (467)
T KOG0960|consen 266 DDLPLAHI------------------------------------------------------------------------ 273 (467)
T ss_pred CCCchhhe------------------------------------------------------------------------
Confidence 33333333
Q ss_pred CCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCC---------CCCcHHHHHHHcCcccc
Q psy15403 325 WTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHE---------GPGSLLSELRRRGWCNS 395 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~---------~~~~L~~~lR~~g~~ys 395 (471)
.++..+.. |..+|+.++++++.++|.- .+++|.+.+-+..+|-+
T Consensus 274 --------------------------AiAVEG~~-w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~s 326 (467)
T KOG0960|consen 274 --------------------------AIAVEGVS-WAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHS 326 (467)
T ss_pred --------------------------eeeEecCC-cCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHH
Confidence 33333333 2334777999999999842 34777788887888998
Q ss_pred eeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccc
Q psy15403 396 LVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHE 458 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~ 458 (471)
+.++.. .+++.|+|.+++-|+. ...+++++..+.++..+|.. -+++.+++++|.++...
T Consensus 327 fqsFnt-~YkDTGLwG~y~V~~~--~~~iddl~~~vl~eW~rL~~-~vteaEV~RAKn~Lkt~ 385 (467)
T KOG0960|consen 327 FQSFNT-SYKDTGLWGIYFVTDN--LTMIDDLIHSVLKEWMRLAT-SVTEAEVERAKNQLKTN 385 (467)
T ss_pred Hhhhhc-ccccccceeEEEEecC--hhhHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHH
Confidence 877665 4789999999999952 37899999999999999988 89999999999988544
No 7
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=5.1e-35 Score=335.11 Aligned_cols=337 Identities=14% Similarity=0.137 Sum_probs=259.8
Q ss_pred CceecCCCcEEEEEeccCC---CC--CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcC--CeeeEEecc
Q psy15403 11 PSTWSPEAMQYKQGYLSDP---KD--LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHS--GYSNAYTSA 83 (471)
Q Consensus 11 ~~~~~~nGl~~~v~~~~~~---~~--~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g--~~l~~~t~~ 83 (471)
.-.+.+||++|.++...++ .. .++....+.+..|++|+++|++++||++|+.. ++...+...| +.+|++|+.
T Consensus 93 ~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~d~~G~aH~LEH~~f~GS~k~p~~-~~~~~l~~~gl~~~lNA~T~~ 171 (1119)
T PTZ00432 93 VYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPHNDKGIPHILEHSVLSGSKKYNYK-DSFSLLVQGGFNSFLNAYTFK 171 (1119)
T ss_pred EEEEcCCCCEEEEEecCCCccceeEEEEEecCCCCCCcchhHHHHHHHhCCCCCCCcc-cHHHHHHhcCcCCCccccCCC
Confidence 3457889999977776565 22 33333334678999999999999999999994 7777887755 789999999
Q ss_pred ceEEEEEEeCh-hhHHHHHHHHHHhhhCCCCChHHH--HH---------H--------------------HHHHHHHHHh
Q psy15403 84 DHTNYHFEVSP-DHLEKTLDIFSKFFICPLFDASST--DR---------E--------------------VNAVNSEHEK 131 (471)
Q Consensus 84 d~t~~~~s~~~-~~l~~~L~ll~~~l~~P~f~ee~~--~~---------~--------------------k~~~~~el~~ 131 (471)
|+|+|.+.+.+ +++..+|+++.+++.+|.|+++++ .+ + ++.+.+|++.
T Consensus 172 D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~ 251 (1119)
T PTZ00432 172 DRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKK 251 (1119)
T ss_pred CceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHH
Confidence 99999999987 479999999999999999998863 22 1 7789999999
Q ss_pred cCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHH
Q psy15403 132 NIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAV 211 (471)
Q Consensus 132 ~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~ 211 (471)
..++|..++.+.+.+.+| +|||+++..|++++|..++ .++|++||++||+|+||+|+|+||+|++++.++++
T Consensus 252 ~~~~p~~~~~~~~~~~lf-~~pY~~~~~G~~~~I~~lt-------~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~ 323 (1119)
T PTZ00432 252 RFSDPLSFGYSVIYQNLF-SNVYKYDSGGDPKDIVELT-------YEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVD 323 (1119)
T ss_pred hhCCHHHHHHHHHHHHHh-CCCCCCCCCCChHhhccCC-------HHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHH
Confidence 999999999999989999 9999999999999999999 99999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCCC----CCCCCCC--ccccccccee----ccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCC
Q psy15403 212 DKFKDVKNKNVSTPE----WTTHPYG--KDQLKTRGYV----TPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPY 281 (471)
Q Consensus 212 k~fg~lp~~~~~~~~----~~~~~~~--~~~~~~~~~~----~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 281 (471)
++|+.+|.....+.. ....+.. ......+.+. ..+..|
T Consensus 324 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~-------------------------------- 371 (1119)
T PTZ00432 324 NYLTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEE-------------------------------- 371 (1119)
T ss_pred HHHhhcccccccccccccccccccccccccccCCeEEEeccCCCcccc--------------------------------
Confidence 999988755321100 0000000 0000001000 011112
Q ss_pred CCccccccCccccccccccccccCCCCchhhhhhccCCcCCCCCCCCCCCcccccceEEEeecCCcceEEE-EeecCCC-
Q psy15403 282 GKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLV-TFPIPDL- 359 (471)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 359 (471)
..+.+ .|+++..
T Consensus 372 ------------------------------------------------------------------~~l~~~~w~~~p~~ 385 (1119)
T PTZ00432 372 ------------------------------------------------------------------ENLMSVSWLLNPKH 385 (1119)
T ss_pred ------------------------------------------------------------------ccEEEEEEEcCCcc
Confidence 22333 2554211
Q ss_pred ----------cchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceee-ecCCCCCCeeEEEEEEE-cCcch----hhc
Q psy15403 360 ----------QEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVG-GPRSGAKGFAFFTVTVD-LTLDG----INH 423 (471)
Q Consensus 360 ----------~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~-~~~~~~~~~~~~~v~~~-~~~~~----~~~ 423 (471)
.+..++.++.+|+++|||+++|+|++.||+.||+|++.. +.. .....+.|.|.+. +..++ .++
T Consensus 386 ~~~~~~~~~~~d~~~~~AL~VLs~lLggg~sS~L~q~LrE~GLa~svv~~~~~-~~~~~~~f~I~l~g~~~~~~~~~~~~ 464 (1119)
T PTZ00432 386 NGSKDYDKSLIDPVDYLALLVLNYLLLGTPESVLYKALIDSGLGKKVVGSGLD-DYFKQSIFSIGLKGIKETNEKRKDKV 464 (1119)
T ss_pred ccccccccccCCHHHHHHHHHHHHHHcCCCccHHHHHHHhcCCCcCCCcCccc-CCCCceEEEEEEEcCChHhccchhhh
Confidence 223467799999999999999999999999999999743 443 3456788998886 33322 135
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 424 ADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 424 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
++++++.|+++|++|+++|++++++++++.++
T Consensus 465 ~~ev~~~I~~~L~~l~~eGi~~eele~a~~ql 496 (1119)
T PTZ00432 465 HYTFEKVVLNALTKVVTEGFNKSAVEASLNNI 496 (1119)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 88999999999999999999999999998776
No 8
>KOG2067|consensus
Probab=100.00 E-value=8.1e-35 Score=285.85 Aligned_cols=339 Identities=17% Similarity=0.185 Sum_probs=286.4
Q ss_pred CCCceecCCCcEEEEEeccCCCC------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEec
Q psy15403 9 TMPSTWSPEAMQYKQGYLSDPKD------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTS 82 (471)
Q Consensus 9 ~~~~~~~~nGl~~~v~~~~~~~~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~ 82 (471)
..+.|-+||||+|..-..+.+-. ++|+++|.....|++|++++|.|..|.+++.. ++...|+..|+..+++++
T Consensus 24 ~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~-ei~~~LE~~GGn~~cqsS 102 (472)
T KOG2067|consen 24 NTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSK-EILAELEKLGGNCDCQSS 102 (472)
T ss_pred cceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHH-HHHHHHHHhCCccccccc
Confidence 45667899999986433333322 99999999999999999999999999999995 999999999999999999
Q ss_pred cceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCCh
Q psy15403 83 ADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNK 162 (471)
Q Consensus 83 ~d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~ 162 (471)
+|.++|.+++.+++++.++++|++.+.+|.|++++++.++..+.-|+...-.+|+.++.+.++.+.|.++..+.+..+..
T Consensus 103 Retm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~ 182 (472)
T KOG2067|consen 103 RETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPE 182 (472)
T ss_pred HhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccce
Q psy15403 163 ETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGY 242 (471)
Q Consensus 163 e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~ 242 (471)
+.|.+|+ .+.|.+|.+.+|+|++|+++.|| ++++++.+.++++|+.||+.+.++......-+. ++...+
T Consensus 183 ~~i~~I~-------~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s~~~p~i~~~~aQYt---GG~~~~ 251 (472)
T KOG2067|consen 183 ENIDKIN-------REVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDESKAQYT---GGELKI 251 (472)
T ss_pred hhhhhhh-------HHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCccCCCCcccchhhcc---cccccc
Confidence 9999999 99999999999999999999999 999999999999999999865443332221110 000000
Q ss_pred eccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCC
Q psy15403 243 VTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 322 (471)
Q Consensus 243 ~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (471)
. -+.| .+++
T Consensus 252 ~------------~d~~------------------~~~~----------------------------------------- 260 (472)
T KOG2067|consen 252 D------------TDAP------------------QVTG----------------------------------------- 260 (472)
T ss_pred C------------CCCc------------------cccC-----------------------------------------
Confidence 0 0000 0011
Q ss_pred CCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCC-----------CcHHHHH-HHc
Q psy15403 323 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGP-----------GSLLSEL-RRR 390 (471)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~-----------~~L~~~l-R~~ 390 (471)
..+.+++.+.|......+. |.+++-+|+.++|||++ ||||..+ .+.
T Consensus 261 ---------------------g~EltHv~lg~Eg~~~~de-D~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry 318 (472)
T KOG2067|consen 261 ---------------------GPELTHVVLGFEGCSWNDE-DFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRY 318 (472)
T ss_pred ---------------------ccceeeeeEeeccCCCCCh-hHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhh
Confidence 1245788888888776655 88899999999999866 8899664 589
Q ss_pred CcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcc
Q psy15403 391 GWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIH 457 (471)
Q Consensus 391 g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~ 457 (471)
.|.|++.++... +.+.|+|.|++++.| +.+.++++.+-+++..+.. ++++++++++|.|+..
T Consensus 319 ~wv~sctAfnhs-y~DtGlfgi~~s~~P---~~a~~aveli~~e~~~~~~-~v~~~el~RAK~qlkS 380 (472)
T KOG2067|consen 319 HWVYSCTAFNHS-YSDTGLFGIYASAPP---QAANDAVELIAKEMINMAG-GVTQEELERAKTQLKS 380 (472)
T ss_pred HHHHHhhhhhcc-ccCCceeEEeccCCH---HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999999988775 688999999999999 6888899999999998866 5999999999999854
No 9
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=242.19 Aligned_cols=338 Identities=17% Similarity=0.285 Sum_probs=272.6
Q ss_pred ecCCCcEEEEEeccCCCC--CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCe-eeEEeccceEEEEE
Q psy15403 14 WSPEAMQYKQGYLSDPKD--LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGY-SNAYTSADHTNYHF 90 (471)
Q Consensus 14 ~~~nGl~~~v~~~~~~~~--~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~-l~~~t~~d~t~~~~ 90 (471)
+.++|+++..+...|+.. ......+|.+..|++|.+||+++.|+.+||-.+-|..++.+-=.. +||.|+.|.|+|-+
T Consensus 26 H~~TGa~l~hi~~~d~~~vFsi~F~T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~YP~ 105 (978)
T COG1026 26 HEKTGAELAHIKNEDPNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPA 105 (978)
T ss_pred eccCCceEEEecCCCcCceEEEEeecCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcceeec
Confidence 457999987666555555 777889999999999999999999999999988888888665444 89999999999999
Q ss_pred EeC-hhhHHHHHHHHHHhhhCCCCChHHHHHH--------------HHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCC
Q psy15403 91 EVS-PDHLEKTLDIFSKFFICPLFDASSTDRE--------------VNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYN 155 (471)
Q Consensus 91 s~~-~~~l~~~L~ll~~~l~~P~f~ee~~~~~--------------k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~ 155 (471)
++. .+++-.+|.++.+.+.+|.++++.|.++ ++.+.+|++....++.+++++.++..+|++.-|+
T Consensus 106 sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ty~ 185 (978)
T COG1026 106 SSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYG 185 (978)
T ss_pred cccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHhhCCCcccc
Confidence 885 6899999999999999999999999987 5678899999999999999999999999999999
Q ss_pred CCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHh-hccCCCCCCCCCCCCCCCCCc
Q psy15403 156 RFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK-FKDVKNKNVSTPEWTTHPYGK 234 (471)
Q Consensus 156 ~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~-fg~lp~~~~~~~~~~~~~~~~ 234 (471)
..+.|.+..|..++ +|++++||+++|+|+|+.++++|+++.+++.+.++.+ +..........+-+....+.
T Consensus 186 ~~SGG~P~~I~~Lt-------yE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~~- 257 (978)
T COG1026 186 VNSGGDPKNIPDLT-------YEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFK- 257 (978)
T ss_pred ccCCCCcccccccC-------HHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCcccccC-
Confidence 99999999999999 9999999999999999999999999999999999877 44433332111110111110
Q ss_pred ccccccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhh
Q psy15403 235 DQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQH 314 (471)
Q Consensus 235 ~~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
.| +.-....||+
T Consensus 258 --------------------------------------~~------------------------~~~~~~ypi~------ 269 (978)
T COG1026 258 --------------------------------------KP------------------------RRKVLEYPIS------ 269 (978)
T ss_pred --------------------------------------cc------------------------cccceeeccC------
Confidence 00 0000011111
Q ss_pred hccCCcCCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcc-
Q psy15403 315 KKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC- 393 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~- 393 (471)
......++..+.+.|-.+...+.++..++.+|..+|-++..+.|.+.|-|-|++
T Consensus 270 -------------------------~~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl~~~liesglg~ 324 (978)
T COG1026 270 -------------------------FDEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPLTQALIESGLGF 324 (978)
T ss_pred -------------------------CCCCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHHHHHHHHcCCCc
Confidence 112345778899999999999999999999999999999999999999998888
Q ss_pred cceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 394 ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+.+++..... .-...|.|.+.-.+. ++++++-+.|++.|+.|...|++.+.++.++.|+
T Consensus 325 ~~~~g~~~~~-~~~~~f~v~~~gv~~--ek~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~ 383 (978)
T COG1026 325 ADVSGSYDSD-LKETIFSVGLKGVSE--EKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQL 383 (978)
T ss_pred ccccceeccc-cceeEEEEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5555544433 233566665555443 7889999999999999999999999999997775
No 10
>KOG2019|consensus
Probab=99.91 E-value=4.1e-23 Score=214.33 Aligned_cols=342 Identities=18% Similarity=0.234 Sum_probs=279.3
Q ss_pred CCceecCCCcEEEEEeccCCCC--CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcC-CeeeEEeccceE
Q psy15403 10 MPSTWSPEAMQYKQGYLSDPKD--LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHS-GYSNAYTSADHT 86 (471)
Q Consensus 10 ~~~~~~~nGl~~~v~~~~~~~~--~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g-~~l~~~t~~d~t 86 (471)
+.-++.+.|..|..+...|+.. .++.+..|++..|+.|+++|....|+.+||-++-|-++|.+-- .-+|+.|..|+|
T Consensus 54 v~lkH~~Tgae~lhl~reD~N~vFsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T 133 (998)
T KOG2019|consen 54 VLLKHKKTGAEVLHLDREDENNVFSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYT 133 (998)
T ss_pred eeeeecCCCceeEeeccCCCCceeEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcc
Confidence 3456778899987666666655 9999999999999999999999999999999999999987653 446999999999
Q ss_pred EEEEEe-ChhhHHHHHHHHHHhhhCCCCChHHHHHH------------------HHHHHHHHHhcCCChHHHHHHHHHHH
Q psy15403 87 NYHFEV-SPDHLEKTLDIFSKFFICPLFDASSTDRE------------------VNAVNSEHEKNIPNDAWRLDQLEKAT 147 (471)
Q Consensus 87 ~~~~s~-~~~~l~~~L~ll~~~l~~P~f~ee~~~~~------------------k~~~~~el~~~~~~p~~~~~~~l~~~ 147 (471)
.|-+.+ .++++..+.+++.+....|.+.+.+|.++ +..+.+|++....++.+++...++..
T Consensus 134 ~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~ 213 (998)
T KOG2019|consen 134 FYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQA 213 (998)
T ss_pred eeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHh
Confidence 999976 57999999999999999999999999987 77899999999999999999999999
Q ss_pred cCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCC
Q psy15403 148 CDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEW 227 (471)
Q Consensus 148 ~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~ 227 (471)
+|+++-|+-.+.|++-.|-.++ .+++++||+++|.|+|+.+...|++..++...+++..|......+......
T Consensus 214 L~p~~tYgv~SGGDPl~IpdLt-------~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~ 286 (998)
T KOG2019|consen 214 LFPENTYGVNSGGDPLDIPDLT-------YEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVT 286 (998)
T ss_pred hCccccccccCCCCcccCcccc-------HHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccc
Confidence 9999999999999999999999 999999999999999999999999999999999988776554333222211
Q ss_pred CCCCCCcccccccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCC
Q psy15403 228 TTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPI 307 (471)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (471)
...++. .++.++. -+++.+
T Consensus 287 ~qk~f~----kp~rvve----------~~p~d~----------------------------------------------- 305 (998)
T KOG2019|consen 287 FQKLFD----KPRRVVE----------KGPADP----------------------------------------------- 305 (998)
T ss_pred cccccc----cCceeee----------ecCCCC-----------------------------------------------
Confidence 112221 1111110 000000
Q ss_pred CchhhhhhccCCcCCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHH
Q psy15403 308 PDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSEL 387 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~l 387 (471)
..+.+.+...++.|-.++..+.++..+|++|++++-++.+|.+++.|
T Consensus 306 ---------------------------------~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~L 352 (998)
T KOG2019|consen 306 ---------------------------------GDLPKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKAL 352 (998)
T ss_pred ---------------------------------CCCccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 11224567788999999999989999999999999999999999999
Q ss_pred HHcCcc--cceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 388 RRRGWC--NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 388 R~~g~~--ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
-|-|+. .++.++... ..-.+.|.|...-..+ ++++.+.++|..+++++.+.|++.+.++.+-.+|
T Consensus 353 iESGLGtEfsvnsG~~~-~t~~~~fsVGLqGvse--ediekve~lV~~t~~~lae~gfd~drieAil~qi 419 (998)
T KOG2019|consen 353 IESGLGTEFSVNSGYED-TTLQPQFSVGLQGVSE--EDIEKVEELVMNTFNKLAETGFDNDRIEAILHQI 419 (998)
T ss_pred HHcCCCcccccCCCCCc-ccccceeeeeeccccH--HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 987776 566666653 3445788887776554 6888899999999999999999999999886665
No 11
>PRK15101 protease3; Provisional
Probab=99.89 E-value=6.5e-22 Score=227.01 Aligned_cols=328 Identities=10% Similarity=-0.004 Sum_probs=234.1
Q ss_pred ceecCCCcEEEEEecc----CCCC------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEe
Q psy15403 12 STWSPEAMQYKQGYLS----DPKD------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYT 81 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~----~~~~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t 81 (471)
...++||+++..+... .|.. .+|...++....|++.|+..++.. . ..++....+..|.+++..
T Consensus 525 ~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~-----~-l~e~~y~a~~aG~~~~~~- 597 (961)
T PRK15101 525 LIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGL-----A-LDQLSNQASVGGISFSTN- 597 (961)
T ss_pred EEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHH-----H-HHHHhchHHhcCcEEEEc-
Confidence 3456799987544432 1223 778888888999999999999743 1 234555566678999988
Q ss_pred ccceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HcCCCCCCCCCCCC
Q psy15403 82 SADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKA-TCDPKHDYNRFGTG 160 (471)
Q Consensus 82 ~~d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~-~~~~~~p~~~~~~G 160 (471)
+.+.+.+++++.+++++.+|+++.+++.+|.|++++|+++|+.+.+++++...+.. +.+.+.. .++.+|||+.. .+
T Consensus 598 ~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~py~~~-~~ 674 (961)
T PRK15101 598 ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKA--YEQAIMPAQMLSQVPYFER-DE 674 (961)
T ss_pred cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCc--HHHHHHHHHHHhcCCCCCH-HH
Confidence 79999999999999999999999999999999999999999999999987654322 2233322 34668999865 67
Q ss_pred ChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCccccccc
Q psy15403 161 NKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTR 240 (471)
Q Consensus 161 t~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~ 240 (471)
+.+.|.+++ .++|++||+++|.+.+++++|+||++.+++.++++++++.++..+. .+.....
T Consensus 675 ~~~~l~~it-------~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~---~~~~~~~-------- 736 (961)
T PRK15101 675 RRKLLPSIT-------LKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGT---EWWRGKD-------- 736 (961)
T ss_pred HHHHHhcCC-------HHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCc---ccccccc--------
Confidence 999999999 9999999999999999999999999999999999999988865321 0000000
Q ss_pred ceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCc
Q psy15403 241 GYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNV 320 (471)
Q Consensus 241 ~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
+..+ ..+..+
T Consensus 737 -~~~~-~~~~~~-------------------------------------------------------------------- 746 (961)
T PRK15101 737 -VVVD-KKQSVN-------------------------------------------------------------------- 746 (961)
T ss_pred -eEeC-CCCeEE--------------------------------------------------------------------
Confidence 0000 000000
Q ss_pred CCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHH-HcCcccceeee
Q psy15403 321 TTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELR-RRGWCNSLVGG 399 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR-~~g~~ys~~~~ 399 (471)
+...+......+.+.|..... +..+..+++.+||++.+++||.+|| |+||+|+|+++
T Consensus 747 ------------------~~~~~~~~~~~~~~~~~~~g~----~~~~~~v~~~lLg~~~ssrlf~~LRtk~qLgY~V~s~ 804 (961)
T PRK15101 747 ------------------FEKAGSSTDSALAAVYVPTGY----DEYQSSAYSSLLGQIIQPWFYNQLRTEEQLGYAVFAF 804 (961)
T ss_pred ------------------EecCCCCCCCeEEEEEEeCCC----CCHHHHHHHHHHHHHHhHHHHHHHHHHhhhceEEEEE
Confidence 000011122333344422222 2247899999999999999999999 69999999998
Q ss_pred cCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchh
Q psy15403 400 PRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCF 461 (471)
Q Consensus 400 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~ 461 (471)
.... .+.+.+.+.++......+.+.+.++.+.+.+.... .++++++|+++|++++.....
T Consensus 805 ~~~~-~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l-~~lt~eE~~~~k~~l~~~~~~ 864 (961)
T PRK15101 805 PMSV-GRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKL-RAMKPEEFAQYQQALINQLLQ 864 (961)
T ss_pred eecc-CCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhcC
Confidence 7654 44555666665554334556666666655543322 489999999999999877544
No 12
>KOG2583|consensus
Probab=99.88 E-value=1e-19 Score=180.08 Aligned_cols=324 Identities=14% Similarity=0.083 Sum_probs=246.4
Q ss_pred CCCceecCCCcEEEEEeccCCCC------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEec
Q psy15403 9 TMPSTWSPEAMQYKQGYLSDPKD------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTS 82 (471)
Q Consensus 9 ~~~~~~~~nGl~~~v~~~~~~~~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~ 82 (471)
....|-++|||++.....+.+.. ++|+++|+.+++|++|++....++.|++++. ..|.+-.+..|+.++++.+
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sa-l~ivr~se~~GG~Lss~~t 100 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSA-LKIVRESEQLGGTLSSTAT 100 (429)
T ss_pred hhhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccch-hhhhhhhHhhCceeeeeee
Confidence 56778899999998888777777 9999999999999999999999999999999 7999999999999999999
Q ss_pred cceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy15403 83 ADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREV-NAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGN 161 (471)
Q Consensus 83 ~d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k-~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt 161 (471)
+|+..+++++++++++-.|.+|.+++..|.|.+++++... ..+..++. ..+|...+.+.++++.|.+ .++++....
T Consensus 101 Re~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~--~~t~~~~a~e~lH~aAfRn-gLgnslY~p 177 (429)
T KOG2583|consen 101 RELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLA--YQTPYTIAIEQLHAAAFRN-GLGNSLYSP 177 (429)
T ss_pred cceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhh--hcChHHHHHHHHHHHHHhc-ccCCcccCC
Confidence 9999999999999999999999999999999999999998 66666554 6789999999999999987 888887766
Q ss_pred hhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccc
Q psy15403 162 KETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRG 241 (471)
Q Consensus 162 ~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~ 241 (471)
.-.|.+++ .++|.+|.+++|..+|+.|+-+| +|++.++.+.++++ .++......+.+ ..+
T Consensus 178 ~~~vg~vs-------s~eL~~Fa~k~fv~gn~~lvg~n-vd~~~L~~~~~~~~-~~~~~~~~k~a~--a~~--------- 237 (429)
T KOG2583|consen 178 GYQVGSVS-------SSELKDFAAKHFVKGNAVLVGVN-VDHDDLKQFADEYA-PIRDGLPLKPAP--AKY--------- 237 (429)
T ss_pred cccccCcc-------HHHHHHHHHHHhhccceEEEecC-CChHHHHHHHHHhc-cccCCCCCCCCC--ccc---------
Confidence 66799999 99999999999999999999997 99999999999972 233222111110 011
Q ss_pred eeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcC
Q psy15403 242 YVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVT 321 (471)
Q Consensus 242 ~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
+|+-.++
T Consensus 238 -----------------------------------------------~gGe~Rk-------------------------- 244 (429)
T KOG2583|consen 238 -----------------------------------------------SGGEARK-------------------------- 244 (429)
T ss_pred -----------------------------------------------cCCcccc--------------------------
Confidence 1110000
Q ss_pred CCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCC--cchhccCchhHHHHhhcCCCC----CcHHHHHH-Hc-Ccc
Q psy15403 322 TPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDL--QEQHKSGPDNYLSHLIGHEGP----GSLLSELR-RR-GWC 393 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~Lg~~~~----~~L~~~lR-~~-g~~ 393 (471)
+ .......+.+....- .+...-.+..++.+.||.... ..++.++- .. +..
T Consensus 245 -----------~-----------~~g~~~~v~vagegAAa~~~k~~~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~ 302 (429)
T KOG2583|consen 245 -----------D-----------ARGNRVHVAVAGEGAAAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQG 302 (429)
T ss_pred -----------c-----------cCCceeEEEEecCcccccchHHHHHHHHHHHHHhcccccccccchHHHHHhhccccC
Confidence 0 011222333332221 112223356777888887664 55666655 22 223
Q ss_pred cceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 394 ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
-++++... .+.+.|+|.|++..+. ..+.++++.+...|+.+..++++-.....+.+.+
T Consensus 303 ~s~sA~~a-~ysDsGL~gv~~~~~~---~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l 360 (429)
T KOG2583|consen 303 ASASAFNA-PYSDSGLFGVYVSAQG---SQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKAL 360 (429)
T ss_pred ceeeeecc-cccCCceEEEEEEecC---ccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 33333333 3678899999998877 5777789999888999988898877666665554
No 13
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.87 E-value=2.8e-21 Score=176.39 Aligned_cols=176 Identities=23% Similarity=0.342 Sum_probs=140.0
Q ss_pred HHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCC---CCCCCCCCCCCcccccccceeccCcccccee
Q psy15403 177 RNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNV---STPEWTTHPYGKDQLKTRGYVTPVKDVRSLL 253 (471)
Q Consensus 177 ~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~ 253 (471)
.++|++||++||+|+||+++|+||++.++++++|+++|+.|+.... ........+.
T Consensus 4 ~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~--------------------- 62 (184)
T PF05193_consen 4 LEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPP--------------------- 62 (184)
T ss_dssp HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSC---------------------
T ss_pred HHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccccccccccccccccc---------------------
Confidence 9999999999999999999999999999999999999999996641 1111100000
Q ss_pred eeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCCCCCCCCCcc
Q psy15403 254 VTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333 (471)
Q Consensus 254 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (471)
..
T Consensus 63 ------------------------------------------------------------------------------~~ 64 (184)
T PF05193_consen 63 ------------------------------------------------------------------------------SE 64 (184)
T ss_dssp ------------------------------------------------------------------------------GG
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cccceEEEeecC-CcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHH-HcCcccceeeecCCCCCCeeEEE
Q psy15403 334 QLKTRGYVTPVK-DVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELR-RRGWCNSLVGGPRSGAKGFAFFT 411 (471)
Q Consensus 334 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR-~~g~~ys~~~~~~~~~~~~~~~~ 411 (471)
.....+...... ....+.+.|+.+...+..+..++.+++.+|+++..++|+..|| ++|++|++.+.... ..+.+.|.
T Consensus 65 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~-~~~~~~~~ 143 (184)
T PF05193_consen 65 PQGKEIVIPSKDESQSIVSIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSS-YRDSGLFS 143 (184)
T ss_dssp SSEEEEEEEESSSSSEEEEEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEE-ESSEEEEE
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeec-cccceEEE
Confidence 011122222222 5677888888877755556778999999999999999999999 69999999998653 34789999
Q ss_pred EEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 412 VTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 412 v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+++ ++++++++.+.++|+.|+++|+++++|+++|++|
T Consensus 144 i~~~~~~---~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 144 ISFQVTP---ENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEG---GGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEcCc---ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 9999999 5888899999999999999999999999999986
No 14
>KOG0961|consensus
Probab=99.86 E-value=2.9e-20 Score=193.00 Aligned_cols=343 Identities=15% Similarity=0.210 Sum_probs=252.5
Q ss_pred ecCCCcEEEEEeccCCCC--CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccceEEEEEE
Q psy15403 14 WSPEAMQYKQGYLSDPKD--LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFE 91 (471)
Q Consensus 14 ~~~nGl~~~v~~~~~~~~--~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~t~~~~s 91 (471)
....|+++.....+.+.. ..-...|-.+..|+.|-++||.|.|+++||-..-|..+-...-++.|++|+.|+|.|.++
T Consensus 25 s~~Tkl~va~~~~pts~vhG~f~v~TEa~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLS 104 (1022)
T KOG0961|consen 25 SKNTKLRVAIGEVPTSMVHGAFSVVTEADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLS 104 (1022)
T ss_pred ccccceEEEEeecCCcceeeeEEeeeeecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEee
Confidence 345788876666665544 333456777889999999999999999999964444444444578999999999999998
Q ss_pred eC-hhhHHHHHHHHHHhhhCCCCChHHHHHH----------HHHHHHHHHhcCCChHHHHHHHHHHHcCC-CCCCCCCCC
Q psy15403 92 VS-PDHLEKTLDIFSKFFICPLFDASSTDRE----------VNAVNSEHEKNIPNDAWRLDQLEKATCDP-KHDYNRFGT 159 (471)
Q Consensus 92 ~~-~~~l~~~L~ll~~~l~~P~f~ee~~~~~----------k~~~~~el~~~~~~p~~~~~~~l~~~~~~-~~p~~~~~~ 159 (471)
+- .+.+-++|..+.+.+..|.+++++|..+ .+.+..|+...+..-..++.+.-++..|+ .++|.....
T Consensus 105 tag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTG 184 (1022)
T KOG0961|consen 105 TAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETG 184 (1022)
T ss_pred cccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccC
Confidence 85 5889999999999999999999999887 56778888877776667777777777675 678998899
Q ss_pred CChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccc
Q psy15403 160 GNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKT 239 (471)
Q Consensus 160 Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~ 239 (471)
|.++.++.++ .|.+++||+++|.++||+++|||.+|++++....+..-..++......++.-+.|+.
T Consensus 185 G~~knLR~lt-------~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~------ 251 (1022)
T KOG0961|consen 185 GRLKNLRELT-------LEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFS------ 251 (1022)
T ss_pred CChhhHHHhh-------HHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcc------
Confidence 9999999999 999999999999999999999999999999998887665555443222211112331
Q ss_pred cceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCC
Q psy15403 240 RGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKN 319 (471)
Q Consensus 240 ~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
T Consensus 252 -------------------------------------------------------------------------------- 251 (1022)
T KOG0961|consen 252 -------------------------------------------------------------------------------- 251 (1022)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCC--cccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHH--HcCcccc
Q psy15403 320 VTTPEWTTHPYG--KDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELR--RRGWCNS 395 (471)
Q Consensus 320 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR--~~g~~ys 395 (471)
+ +..|+. ....++.-..+.+..+..|.++|..+...+.+...++.+|..+|....-+.+-+.+- |..+|.+
T Consensus 252 ---~--tn~~~~i~e~t~~tVefp~~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~fVeieDP~ass 326 (1022)
T KOG0961|consen 252 ---F--TNALSDIKESTVHTVEFPTDDESRGAVEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEIEDPLASS 326 (1022)
T ss_pred ---c--ccCcccCCccceeeeecCCcccccceEEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccceEEecCccccc
Confidence 0 001111 111122222233556788999999999988888889999999999888888877765 6999999
Q ss_pred eeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhhhh
Q psy15403 396 LVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNIL 464 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~~~ 464 (471)
++......-++ .+.+.+...| ++++++....+++.+. ....++...+.+. |....+++|
T Consensus 327 v~f~~~~~vrc--~i~L~f~gVP--~EKi~~~~~k~l~~l~--et~~iDm~Rm~~~----i~~t~~~yL 385 (1022)
T KOG0961|consen 327 VSFHIAEGVRC--DIRLNFAGVP--VEKIDECAPKFLDKLV--ETANIDMERMGYL----IDQTILNYL 385 (1022)
T ss_pred eeeeeecccce--eEEEeecCCc--HHHhhhhhHHHHHHHH--HhcccCHHHHHHH----HHHHHHHHH
Confidence 98876644333 5566666666 4777777766655554 3455666665544 444444444
No 15
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.81 E-value=1.4e-19 Score=162.28 Aligned_cols=129 Identities=29% Similarity=0.390 Sum_probs=124.2
Q ss_pred CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccceEEEEEEeChhhHHHHHHHHHHhhhCC
Q psy15403 32 LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDIFSKFFICP 111 (471)
Q Consensus 32 ~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~t~~~~s~~~~~l~~~L~ll~~~l~~P 111 (471)
++|+++|+.+.+|++|+++||+++|+.+++. .++.+.++..|+.+++.++.+++.|.+++++++++.+|++|++++.+|
T Consensus 20 ~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~-~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l~~l~~~~~~P 98 (149)
T PF00675_consen 20 KAGSRYEPPGKPGLAHLLEHLLFRGSKKYSS-DELQEELESLGASFNASTSRDSTSYSASVLSEDLEKALELLADMLFNP 98 (149)
T ss_dssp S-SGGGSCTTTTTHHHHHHHHTTSBBSSSBH-HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSB
T ss_pred eeccCCCCCCCCchhhhhhhhcccccchhhh-hhhHHHhhhhccccceEecccceEEEEEEecccchhHHHHHHHHHhCC
Confidence 8999999999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy15403 112 LFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGN 161 (471)
Q Consensus 112 ~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt 161 (471)
.|++++|++++..+..+++....+|...+.+.+++.+|.++||+++..|+
T Consensus 99 ~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 99 SFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999998875
No 16
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.13 E-value=7.2e-09 Score=114.42 Aligned_cols=314 Identities=16% Similarity=0.176 Sum_probs=197.7
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeee----EEecc-------ceEEEEEEeChhhHHHHHHHH
Q psy15403 36 LSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSN----AYTSA-------DHTNYHFEVSPDHLEKTLDIF 104 (471)
Q Consensus 36 ~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~----~~t~~-------d~t~~~~s~~~~~l~~~L~ll 104 (471)
.-..+..|-+.-+...+...||++++- .++.+.+...-+.++ +.++. ....+++.+.+++.+.+++++
T Consensus 559 ~l~~~llpyL~L~~~~l~~lgt~~~~y-~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i 637 (978)
T COG1026 559 MLPSELLPYLPLFAFALTNLGTETYSY-KELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELI 637 (978)
T ss_pred CCChhhhhhHHHHHHHHHhcCCCCcCH-HHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHH
Confidence 334456777888888888899999988 588888877643332 22222 345788889999999999999
Q ss_pred HHhhhCCCC-ChHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHcCCCCCCCCCCCC--ChhhhcccCC---CCCc-ch
Q psy15403 105 SKFFICPLF-DASSTDREVNAVNSEHEKNIPN-DAWRLDQLEKATCDPKHDYNRFGTG--NKETLETIPK---SKGI-DV 176 (471)
Q Consensus 105 ~~~l~~P~f-~ee~~~~~k~~~~~el~~~~~~-p~~~~~~~l~~~~~~~~p~~~~~~G--t~e~I~~it~---~~~~-~~ 176 (471)
.+++.++.| +.+-+.....++.+.+.+...+ +...+.-....-++....+.....| -.+-|+++.. .+-. .+
T Consensus 638 ~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei 717 (978)
T COG1026 638 REILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEI 717 (978)
T ss_pred HHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHH
Confidence 999999999 7777777778888887776665 4444433333333332222222222 2223333332 1112 45
Q ss_pred HHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccceeccCccccceeeee
Q psy15403 177 RNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTF 256 (471)
Q Consensus 177 ~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~l~~ 256 (471)
.+.|++-+++++..+|+-+++.|+.+ .+.+.+++.|-++...-.+...... +...+ ... .+...
T Consensus 718 ~~kL~~l~~~i~~~~n~~i~i~~~~~--~~~~~~e~~l~~~~~~~~~~~~~~~-~~~~~-----~~~----~~~~~---- 781 (978)
T COG1026 718 ADKLQALRKKIFQTNNLRIAIIGDID--KILDLLENPLLKFLEHLLPGFELPT-PPKNP-----HLD----LISSL---- 781 (978)
T ss_pred HHHHHHHHHHHhhcCceEEEEecChh--hhHHHHHHHhhhhhcccCcccccCC-CCCCc-----chh----hhccc----
Confidence 78899999999999999899999874 4455555555444321000000000 00000 000 00000
Q ss_pred cCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCCCCCCCCCccccc
Q psy15403 257 PIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLK 336 (471)
Q Consensus 257 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (471)
T Consensus 782 -------------------------------------------------------------------------------- 781 (978)
T COG1026 782 -------------------------------------------------------------------------------- 781 (978)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeecCCcceEEEEeecCC-CcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEE
Q psy15403 337 TRGYVTPVKDVRSLLVTFPIPD-LQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVD 415 (471)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~ 415 (471)
....+.|. +.+...++|++-. .+..+++.++.|++.+|+ .+-|...+|++|+||++++..... .|.|.+..-
T Consensus 782 ~~~~ii~~-p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~---~~~lw~~IR~~GGAYGa~as~~~~---~G~f~f~sY 854 (978)
T COG1026 782 SEATIIPS-PVAYNALAFSIGGLPYTHPDYAALQVLSEYLG---SGYLWNKIREKGGAYGASASIDAN---RGVFSFASY 854 (978)
T ss_pred cceEEecc-HHHHHHHhhhccCCCCCCccchHHHHHHHHhc---cchhHHHHHhhccccccccccccC---CCeEEEEec
Confidence 01111110 0122223333322 244557789999999999 466779999999999999886632 467777666
Q ss_pred cCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcc
Q psy15403 416 LTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIH 457 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~ 457 (471)
-+| ++.+..+..++.++.|.++.+++.++++++-.+|.
T Consensus 855 RDP----n~~kt~~v~~~~v~~l~s~~~~~~d~~~~ilg~i~ 892 (978)
T COG1026 855 RDP----NILKTYKVFRKSVKDLASGNFDERDLEEAILGIIS 892 (978)
T ss_pred CCC----cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhc
Confidence 677 56779999999999999999999999999877654
No 17
>PTZ00432 falcilysin; Provisional
Probab=98.92 E-value=1.8e-07 Score=108.86 Aligned_cols=312 Identities=12% Similarity=0.042 Sum_probs=184.7
Q ss_pred CHHHHHHHHHh-cCCCCCCChhHHHHHHHHcCCeeeEE----ec------------cceEEEEEEeChhhHHHHHHHHHH
Q psy15403 44 GLAHFCEHMLF-MGTETYPAENEYNKFLSEHSGYSNAY----TS------------ADHTNYHFEVSPDHLEKTLDIFSK 106 (471)
Q Consensus 44 Gla~ll~~ll~-~Gt~~~~~~~~L~~~L~~~g~~l~~~----t~------------~d~t~~~~s~~~~~l~~~L~ll~~ 106 (471)
....|+..++. .||..++. .++...++..-+.++++ ++ .....++++++.++++.+++++.+
T Consensus 699 ~yl~L~~~~l~~~gT~~~s~-~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~e 777 (1119)
T PTZ00432 699 KYLNLFKALLKENGTDKLSS-EEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLE 777 (1119)
T ss_pred hhHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEEEEEEEhhhhHHHHHHHHHH
Confidence 33444444444 69999988 69999998885555432 22 235788889999999999999999
Q ss_pred hhhCCCCChHH-HHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHcCCCCCCCCCCCC--ChhhhcccC-C---CCCcchHH
Q psy15403 107 FFICPLFDASS-TDREVNAVNSEHEKNIP-NDAWRLDQLEKATCDPKHDYNRFGTG--NKETLETIP-K---SKGIDVRN 178 (471)
Q Consensus 107 ~l~~P~f~ee~-~~~~k~~~~~el~~~~~-~p~~~~~~~l~~~~~~~~p~~~~~~G--t~e~I~~it-~---~~~~~~~e 178 (471)
++.++.|+... +....++....+.+... +...++...+..-+-...-+.....| ...-|+.+. . ..-..+.+
T Consensus 778 il~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~ 857 (1119)
T PTZ00432 778 ALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVES 857 (1119)
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999998766 77777777777766554 33333332221111100001111111 222233221 0 01113577
Q ss_pred HHHHHHHhhcccCCeEEEEEcCC-CHHHHHHHHHHhhccCCCCCCCCC-CCCCCCCCcccccccceeccCccccceeeee
Q psy15403 179 ELLKFHNKWYSSNIMGLAILGKE-SLDELEKYAVDKFKDVKNKNVSTP-EWTTHPYGKDQLKTRGYVTPVKDVRSLLVTF 256 (471)
Q Consensus 179 dL~~f~~~~y~p~n~tLvVvGd~-d~~~l~~lv~k~fg~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~v~l~~ 256 (471)
.|.+.+++.+..+++.+.|+|+. +.+.+.+.+...+..++....... .....++. ...... .++
T Consensus 858 ~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~--------~~~ 923 (1119)
T PTZ00432 858 KLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFKENDNKSSDKVWV------KEVLDK--------KLM 923 (1119)
T ss_pred HHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhcccccccccccccccccc------cccccc--------ccc
Confidence 78889999999999999999997 445666766666666653210000 00000110 000000 000
Q ss_pred cCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCCCCCCCCCccccc
Q psy15403 257 PIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLK 336 (471)
Q Consensus 257 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (471)
... .+
T Consensus 924 --------------------------------------------------------------------------~~~-~~ 928 (1119)
T PTZ00432 924 --------------------------------------------------------------------------ESV-DK 928 (1119)
T ss_pred --------------------------------------------------------------------------CCc-cc
Confidence 000 01
Q ss_pred ceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEc
Q psy15403 337 TRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDL 416 (471)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~ 416 (471)
+...+.|. ..+.+....+. ..+++....++.|+..+|. .+-|...||++|.||++.+.... .|.|.++.-=
T Consensus 929 ~e~~~~p~-~V~yv~~~~~~-~~~~~~~~~~l~Vl~~~L~---~~yLw~~IR~~GGAYG~~~~~~~----~G~~~f~SYR 999 (1119)
T PTZ00432 929 NEFIVLPT-RVNFVGMGGKL-FDKSDKVDGSFQVIVHYLK---NSYLWKTVRMSLGAYGVFADLLY----TGHVIFMSYA 999 (1119)
T ss_pred ceEEEccC-ceeEEEEeccc-ccCCCccCHHHHHHHHHHc---cccchHHHcccCCccccCCccCC----CCeEEEEEec
Confidence 11111111 12222222111 2233445678999999998 47788999999999999865432 3677766555
Q ss_pred CcchhhcHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHhccc
Q psy15403 417 TLDGINHADDIVELLFQYIKLIHD--QGPQEWIFLELFVQIIHE 458 (471)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~i~~--~~~~~~~~~~~k~~~i~~ 458 (471)
+| ++.+.++...+..+.|++ ..++++++++++-..+..
T Consensus 1000 DP----n~~~Tl~~f~~~~~~l~~~~~~~~~~~l~~~iig~~~~ 1039 (1119)
T PTZ00432 1000 DP----NFEKTLEVYKEVASALREAAETLTDKDLLRYKIGKISN 1039 (1119)
T ss_pred CC----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Confidence 66 667788888888888888 569999999998776544
No 18
>KOG2019|consensus
Probab=98.83 E-value=3.6e-07 Score=96.82 Aligned_cols=329 Identities=14% Similarity=0.114 Sum_probs=198.4
Q ss_pred CCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCee--eEEeccc---
Q psy15403 17 EAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYS--NAYTSAD--- 84 (471)
Q Consensus 17 nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l--~~~t~~d--- 84 (471)
||+++.-..+..... ..|+.-+ +-.|-+.-+++.|+..||...+- .++.+.+..+-+.+ +..+..+
T Consensus 568 ngvkv~~~dl~tngi~Y~r~~~~l~~~p~-eL~PylPlfc~sll~lGt~~lsf-~el~qqI~rkTGGiS~~p~~~s~~~~ 645 (998)
T KOG2019|consen 568 NGVKVQRCDLFTNGITYTRVVFDLNSLPE-ELLPYLPLFCQSLLNLGTGDLSF-VELEQQIGRKTGGISVSPLVSSDDGM 645 (998)
T ss_pred cCceeEEeeccCCceEEEEEeeccccCcH-HhhcchHHHHHHHHhcCCCcccH-HHHHHHhhhhcCceeecceeccCCCC
Confidence 676554444444322 5566433 36788899999999999999987 58999988874443 3333322
Q ss_pred -----eEEEEEEeChhhHHHHHHHHHHhhhCCCCChHH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCC
Q psy15403 85 -----HTNYHFEVSPDHLEKTLDIFSKFFICPLFDASS-TDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFG 158 (471)
Q Consensus 85 -----~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~-~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~ 158 (471)
...|+..+...+++.++++...++.++.|...+ |........+++.+...+....+...-..+.+.....-...
T Consensus 646 d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~Eq 725 (998)
T KOG2019|consen 646 DEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQ 725 (998)
T ss_pred CccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccchHhH
Confidence 135555667889999999999999999997544 77778888888887777665544444444444322222222
Q ss_pred CCChhhhc------ccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcC-CCHHHHHHHHHHhhccCCCCCCC-CCCCCCC
Q psy15403 159 TGNKETLE------TIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGK-ESLDELEKYAVDKFKDVKNKNVS-TPEWTTH 230 (471)
Q Consensus 159 ~Gt~e~I~------~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd-~d~~~l~~lv~k~fg~lp~~~~~-~~~~~~~ 230 (471)
+|-.+.|+ +..+..=..+.+.|.+..+-....++|.+.|..+ ..+..+++.|++.+..+|...+. .......
T Consensus 726 lgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st~d~ 805 (998)
T KOG2019|consen 726 LGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKSTWDA 805 (998)
T ss_pred hcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCccCccc
Confidence 23222221 1111111122445555556666789999999888 78889999999999888843211 1111111
Q ss_pred CCCcccccccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCch
Q psy15403 231 PYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDL 310 (471)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
..+ ... + .+.+.+++-+. .+.|
T Consensus 806 r~p--~~~----------~-~i~~~~P~fqv-------------------------nyvg-------------------- 827 (998)
T KOG2019|consen 806 RLP--LRS----------E-AIRVVIPTFQV-------------------------NYVG-------------------- 827 (998)
T ss_pred cCC--CCc----------e-eEEEeccccch-------------------------hhhh--------------------
Confidence 110 000 0 00011110000 0000
Q ss_pred hhhhhccCCcCCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHc
Q psy15403 311 QEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRR 390 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~ 390 (471)
--..+.|| ...+..++++|+.+|.. .-|-.++|++
T Consensus 828 ------------ka~~~vpy------------------------------t~~d~asl~vlS~~lt~---k~Lh~evRek 862 (998)
T KOG2019|consen 828 ------------KAGLGVPY------------------------------THPDGASLQVLSKLLTN---KWLHDEVREK 862 (998)
T ss_pred ------------hhcccccC------------------------------CCCCCcHHHHHHHHHHH---HHHHHHHHHh
Confidence 00001111 22345589999999983 4455899999
Q ss_pred CcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcc
Q psy15403 391 GWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIH 457 (471)
Q Consensus 391 g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~ 457 (471)
|.+|+-.+.+... .|.|.++.-=+|+ .-+.++.....-+.++...++++.+.++|-.++.
T Consensus 863 GGAYGgg~s~~sh---~GvfSf~SYRDpn----~lktL~~f~~tgd~~~~~~~~~~dldeAkl~~f~ 922 (998)
T KOG2019|consen 863 GGAYGGGCSYSSH---SGVFSFYSYRDPN----PLKTLDIFDGTGDFLRGLDVDQQDLDEAKLGTFG 922 (998)
T ss_pred cCccCCccccccc---cceEEEEeccCCc----hhhHHHhhcchhhhhhcCCccccchhhhhhhhcc
Confidence 9999998887654 4677776555663 3345666666677778888999999998876654
No 19
>KOG0959|consensus
Probab=98.69 E-value=4.8e-06 Score=93.50 Aligned_cols=161 Identities=12% Similarity=0.007 Sum_probs=124.0
Q ss_pred CCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHH
Q psy15403 41 DLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDR 120 (471)
Q Consensus 41 ~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~ 120 (471)
...+++.+...++..-. .+..-.....|.+++.+.+.....+++..-++.+..+++.+.+++..-.++++.|+.
T Consensus 550 ~~~~l~~l~~~~l~d~l------~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~i 623 (974)
T KOG0959|consen 550 LNSVLSTLYVRLLKDQL------NEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEI 623 (974)
T ss_pred HHHHHHHHHHHHHHHHH------hHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHH
Confidence 44455566655555311 122333455688889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEc
Q psy15403 121 EVNAVNSEHEK-NIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILG 199 (471)
Q Consensus 121 ~k~~~~~el~~-~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvG 199 (471)
.++.+..++++ ...+|...+...+ .++....-+... -..+.++.++ ++++..|-..+.++--+..+|.|
T Consensus 624 ike~~~~~~~n~~~~~p~~~a~~~~-~lll~~~~W~~~--e~~~al~~~~-------le~~~~F~~~~~~~~~~e~~i~G 693 (974)
T KOG0959|consen 624 IKELLKRELRNHAFDNPYQLANDYL-LLLLEESIWSKE--ELLEALDDVT-------LEDLESFISEFLQPFHLELLIHG 693 (974)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHH-HHHhhccccchH--HHHHHhhccc-------HHHHHHHHHHHhhhhheEEEEec
Confidence 99999999999 4455555555544 555555554442 2456667777 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccC
Q psy15403 200 KESLDELEKYAVDKFKDV 217 (471)
Q Consensus 200 d~d~~~l~~lv~k~fg~l 217 (471)
|++.++..++++..+..+
T Consensus 694 N~te~~A~~l~~~v~d~l 711 (974)
T KOG0959|consen 694 NLTEKEALQLLKSVLDIL 711 (974)
T ss_pred CcchHHHHHHHHHHHhhh
Confidence 999999999876655555
No 20
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.8e-05 Score=87.88 Aligned_cols=140 Identities=9% Similarity=0.049 Sum_probs=114.0
Q ss_pred HcCCeeeEEeccceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHcCC
Q psy15403 72 EHSGYSNAYTSADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNI-PNDAWRLDQLEKATCDP 150 (471)
Q Consensus 72 ~~g~~l~~~t~~d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~-~~p~~~~~~~l~~~~~~ 150 (471)
.-|.+++...+.....+++++.++.+..++..+.+.+..-.++++-|...|..+.++++... ..|-..+...+.-+.-.
T Consensus 568 ~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~ 647 (937)
T COG1025 568 LAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQV 647 (937)
T ss_pred hcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCC
Confidence 34788899999999999999999999999999999999988999999999999999998754 56666666666555443
Q ss_pred CCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCC
Q psy15403 151 KHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKN 221 (471)
Q Consensus 151 ~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~ 221 (471)
.+ ....-..+.+.+++ .+++..|-...+.+....+.|.|++..+++.++++.....++...
T Consensus 648 ~~---~s~~e~~~~l~~v~-------~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~ 708 (937)
T COG1025 648 PY---WSREERRNALESVS-------VEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIG 708 (937)
T ss_pred CC---cCHHHHHHHhhhcc-------HHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccC
Confidence 32 22122456778888 999999999999999999999999999999999887665555443
No 21
>KOG0961|consensus
Probab=97.54 E-value=0.0023 Score=68.63 Aligned_cols=276 Identities=12% Similarity=0.069 Sum_probs=167.2
Q ss_pred ccceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCC--C
Q psy15403 82 SADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFG--T 159 (471)
Q Consensus 82 ~~d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~--~ 159 (471)
-.+-..+.+++.+++.+...+-+..++..-.|+++-+.+..++++.++..+..|...++.......+|+........ +
T Consensus 632 ~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~L 711 (1022)
T KOG0961|consen 632 YDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDEL 711 (1022)
T ss_pred chhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccHH
Confidence 34667899999999999999999999999999999999999999999999999988888888888888876554331 1
Q ss_pred CChhhhcccCCCCCc---chHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCC-CCCCCCcc
Q psy15403 160 GNKETLETIPKSKGI---DVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEW-TTHPYGKD 235 (471)
Q Consensus 160 Gt~e~I~~it~~~~~---~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~-~~~~~~~~ 235 (471)
--+.-+++|.+.-.+ .+.+.+.+-.+-...-+.+.+.|+||++- |..-...|..--..+.-. +-..+.
T Consensus 712 ~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~k------id~~~~~Wn~l~~~~~~~nP~~~f~-- 783 (1022)
T KOG0961|consen 712 VLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDK------IDPKMLSWNWLQADPRFGNPGHQFS-- 783 (1022)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhc------CCccccCchhhhcCcccCCchhhcc--
Confidence 112222333221111 22333333333223467889999999763 112222232111000000 000000
Q ss_pred cccccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhh
Q psy15403 236 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHK 315 (471)
Q Consensus 236 ~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (471)
.++. .|+..|.
T Consensus 784 -------------------------------------------~tf~------~~~~~s~-------------------- 794 (1022)
T KOG0961|consen 784 -------------------------------------------ATFE------AGENVSL-------------------- 794 (1022)
T ss_pred -------------------------------------------cccc------cCcccce--------------------
Confidence 0010 0110000
Q ss_pred ccCCcCCCCCCCCCCCcccccceEEEe-ecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCccc
Q psy15403 316 KNKNVTTPEWTTHPYGKDQLKTRGYVT-PVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCN 394 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~y 394 (471)
-+++.. +...++ |..+.+.+.-..|....+.++...+..+++.+|+ -..+.+.+.+|-.||+|
T Consensus 795 -------------e~gsss--k~~~I~~p~sESs~l~~sip~~~~w~dpel~~~~l~~~YL~-~~eGPfW~~IRG~GLAY 858 (1022)
T KOG0961|consen 795 -------------ELGSSS--KELLIGVPGSESSFLYQSIPLDANWNDPELIPAMLFGQYLS-QCEGPFWRAIRGDGLAY 858 (1022)
T ss_pred -------------eccCCc--ceeEecCCCccccceeeecccccccCCcchhHHHHHHHHHH-hcccchhhhhcccchhc
Confidence 001110 111111 2333444444444444566777778899999998 78899999999999999
Q ss_pred ceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHhcc
Q psy15403 395 SLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQ--GPQEWIFLELFVQIIH 457 (471)
Q Consensus 395 s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~~~~~~~~k~~~i~ 457 (471)
+++...... . +.+.+.+-..+ .+.++-+.-+++++++.++ .+++.+++.+|.-++.
T Consensus 859 Ganm~~~~d-~--~~~~~~iyr~a----d~~kaye~~rdiV~~~vsG~~e~s~~~~egAk~s~~~ 916 (1022)
T KOG0961|consen 859 GANMFVKPD-R--KQITLSIYRCA----DPAKAYERTRDIVRKIVSGSGEISKAEFEGAKRSTVF 916 (1022)
T ss_pred cceeEEecc-C--CEEEEEeecCC----cHHHHHHHHHHHHHHHhcCceeecHHHhccchHHHHH
Confidence 999887643 2 34444444344 3344777788888888874 3688999988876654
No 22
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=97.33 E-value=0.002 Score=66.47 Aligned_cols=181 Identities=14% Similarity=0.176 Sum_probs=115.7
Q ss_pred ceecCCCcEEEEEeccCCCC-----CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccceE
Q psy15403 12 STWSPEAMQYKQGYLSDPKD-----LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHT 86 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~-----~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~t 86 (471)
|.-++||+++.+-.--++.. +.|.-.|-.+.-|+|||+||++.. ++. .+++ -|++|++.+.
T Consensus 1 MIvL~NGVRiFin~~M~KDIYlGIs~FGFe~DI~~iLGiAHLLEHILIs----FD~----~~F~------ANASTaRsYM 66 (590)
T PF03410_consen 1 MIVLSNGVRIFINPSMKKDIYLGISNFGFENDIGEILGIAHLLEHILIS----FDS----SKFL------ANASTARSYM 66 (590)
T ss_pred CeEecCceEEEecCccccceEEeecccccccchHHHHhHHHHHHHHeee----cch----HHhh------cccchhhhhh
Confidence 35689999885443333332 778877778889999999999986 222 1111 2688888888
Q ss_pred EEEEEeCh-hhHHHHHHHHHHhhhC-----CCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCC
Q psy15403 87 NYHFEVSP-DHLEKTLDIFSKFFIC-----PLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTG 160 (471)
Q Consensus 87 ~~~~s~~~-~~l~~~L~ll~~~l~~-----P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~G 160 (471)
.|=+.+.. +....++..+...+.+ ..|+...++...+++.+|+-- .+-...+++.+ ..+.+|+-|. .|
T Consensus 67 SFWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYYF--RnEvfHCmDvL-tfL~gGDLYN---GG 140 (590)
T PF03410_consen 67 SFWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYYF--RNEVFHCMDVL-TFLGGGDLYN---GG 140 (590)
T ss_pred hhhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhhh--hhhHHHHHHHH-HHhcCCcccC---Cc
Confidence 88777654 3456677777777765 347777777777777777643 34445567777 4445565543 34
Q ss_pred ChhhhcccCCCCCcchHHHHHHHH-Hhhcc-cCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCC
Q psy15403 161 NKETLETIPKSKGIDVRNELLKFH-NKWYS-SNIMGLAILGKESLDELEKYAVDKFKDVKNKNV 222 (471)
Q Consensus 161 t~e~I~~it~~~~~~~~edL~~f~-~~~y~-p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~ 222 (471)
....+..+. ++++-. +++-+ .+.=+++.|-.++ +.+..++++.||.||+-+.
T Consensus 141 Ri~ML~~l~---------~i~~mL~~RM~~I~GpniVIFVk~l~-~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 141 RIDMLNNLN---------DIRNMLSNRMHRIIGPNIVIFVKELN-PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred hHHHHhhhH---------HHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 555555544 444422 22222 3333444555687 5788999999999997653
No 23
>PHA03081 putative metalloprotease; Provisional
Probab=96.97 E-value=0.005 Score=63.69 Aligned_cols=180 Identities=13% Similarity=0.166 Sum_probs=114.2
Q ss_pred eecCCCcEEEEEeccCCCC-----CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccceEE
Q psy15403 13 TWSPEAMQYKQGYLSDPKD-----LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTN 87 (471)
Q Consensus 13 ~~~~nGl~~~v~~~~~~~~-----~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~t~ 87 (471)
.-++||+++.+-+.-++.. +.|.-.|-.+.-|+|||+||++.. +.. ..++ -|++|.+.+..
T Consensus 2 i~~~ngvr~f~~~~m~kdiy~gi~~fgfe~di~~~lg~ahllehili~----fd~----~~f~------anast~r~yms 67 (595)
T PHA03081 2 IVLSNGVRIFINPSMKKDIYLGISNFGFENDIGEILGIAHLLEHILIS----FDS----SKFV------ANASTARSYMS 67 (595)
T ss_pred eEecCceEEEecCccccceEEeecccccccchHHHHhHHHHHHHHeee----cch----HHhc------ccchhhhhhHh
Confidence 4578999885444333333 778777778889999999999985 222 1111 25778777777
Q ss_pred EEEEeCh-hhHHHHHHHHHHhhhCCC-----CChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy15403 88 YHFEVSP-DHLEKTLDIFSKFFICPL-----FDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGN 161 (471)
Q Consensus 88 ~~~s~~~-~~l~~~L~ll~~~l~~P~-----f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt 161 (471)
|-+.+.. +....++..+...+.++. |+...++...+++.+|+- -.+-...+++.+ ..+.+|+-|. .|.
T Consensus 68 fwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYY--FRnEvfHCmDvL-TfL~gGDLYN---GGR 141 (595)
T PHA03081 68 FWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYY--FRNEVFHCMDVL-TFLGGGDLYN---GGR 141 (595)
T ss_pred HhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhh--hhhhhHHHHHHH-HHhcCCcccC---Cch
Confidence 7766653 345678888888888764 666666666666666654 234445677777 4455665543 355
Q ss_pred hhhhcccCCCCCcchHHHHHHHHH-hhcc-cCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCC
Q psy15403 162 KETLETIPKSKGIDVRNELLKFHN-KWYS-SNIMGLAILGKESLDELEKYAVDKFKDVKNKNV 222 (471)
Q Consensus 162 ~e~I~~it~~~~~~~~edL~~f~~-~~y~-p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~ 222 (471)
...+..+. ++++-.. ++-+ .+.=+++.|-.++ +.+..++++.||.||+-+.
T Consensus 142 i~ML~~l~---------~i~~~L~~RM~~I~GpniVIFVk~ln-~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 142 IDMLDNLN---------DVRDMLSNRMHRISGPNIVIFVKELN-PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred HHHHhhhH---------HHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 55555544 4444332 2222 3333444555677 5788999999999997663
No 24
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=94.09 E-value=1.2 Score=46.94 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCeeeEEecc------ceEEEEEEeChhhHHHHH----HHHHHhhhCC--CCChHHHHHHHHHHHHHHHhc
Q psy15403 65 EYNKFLSEHSGYSNAYTSA------DHTNYHFEVSPDHLEKTL----DIFSKFFICP--LFDASSTDREVNAVNSEHEKN 132 (471)
Q Consensus 65 ~L~~~L~~~g~~l~~~t~~------d~t~~~~s~~~~~l~~~L----~ll~~~l~~P--~f~ee~~~~~k~~~~~el~~~ 132 (471)
-+.+.-+..|..++++... ....+...+..++.+.+. +.+.++.... .+++++++..+..+...+-..
T Consensus 292 Lf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~ 371 (438)
T COG0612 292 LFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLS 371 (438)
T ss_pred HHHHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhc
Confidence 4555556667666555211 223334444333333333 3333333333 389999999999999999998
Q ss_pred CCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCH
Q psy15403 133 IPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESL 203 (471)
Q Consensus 133 ~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~ 203 (471)
.+++...+.......++++..... .--.+.|..++ .++|.++.++++.+.+++++++|+...
T Consensus 372 ~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt-------~~dv~~~a~~~~~~~~~~~~~~~p~~~ 433 (438)
T COG0612 372 LDSPSSIAELLGQYLLLGGSLITL--EELLERIEAVT-------LEDVNAVAKKLLAPENLTIVVLGPEKA 433 (438)
T ss_pred cCCHHHHHHHHHHHHHhcCCccCH--HHHHHHHHhcC-------HHHHHHHHHHhcCCCCcEEEEEccccc
Confidence 999998887777777765443222 22468899999 999999999999999999999998653
No 25
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=93.75 E-value=0.5 Score=45.97 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEecc-----------ceEEEEEEeChhhHHHHHHHHHHhh
Q psy15403 40 KDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSA-----------DHTNYHFEVSPDHLEKTLDIFSKFF 108 (471)
Q Consensus 40 ~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~-----------d~t~~~~s~~~~~l~~~L~ll~~~l 108 (471)
+..+=++-|..-+...||++++. .++...+...-+.+++++.. -...++++++.++++.+++++.+++
T Consensus 106 e~l~yl~Ll~~ll~~lgT~~~sy-~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil 184 (248)
T PF08367_consen 106 EDLPYLPLLTDLLGELGTKNYSY-EELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEIL 184 (248)
T ss_dssp CCHCCHHHHHHHCCCS-BSSS-H-HHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHH
Confidence 35666666666444469999987 69999998886555544421 2347788889999999999999999
Q ss_pred hCCCCChHH-HHHHHHHHHHHHH
Q psy15403 109 ICPLFDASS-TDREVNAVNSEHE 130 (471)
Q Consensus 109 ~~P~f~ee~-~~~~k~~~~~el~ 130 (471)
.+|.|+... +.....+....++
T Consensus 185 ~~~~f~d~~rl~~ll~~~~s~~~ 207 (248)
T PF08367_consen 185 TETDFDDKERLKELLKELKSDME 207 (248)
T ss_dssp HCB-TT-HHHHHHHHHHHHHHHH
T ss_pred hccCCCcHHHHHHHHHHHHHHHH
Confidence 999998875 3444444444444
No 26
>KOG2067|consensus
Probab=90.49 E-value=1.4 Score=45.20 Aligned_cols=116 Identities=9% Similarity=0.155 Sum_probs=86.8
Q ss_pred eeEEeccceEEEEEEeChhhHHHHHHHHHHhhhC--CCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCC
Q psy15403 77 SNAYTSADHTNYHFEVSPDHLEKTLDIFSKFFIC--PLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDY 154 (471)
Q Consensus 77 l~~~t~~d~t~~~~s~~~~~l~~~L~ll~~~l~~--P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~ 154 (471)
-.++.+..-.+++++++++....+++++..-+.+ -..++++++++|.++...+-.+...-.-.+.+.-++.+-.+.
T Consensus 328 nhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~-- 405 (472)
T KOG2067|consen 328 NHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGE-- 405 (472)
T ss_pred hccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccC--
Confidence 3566666777889999999999999998876655 458999999999999999887776666666677666654332
Q ss_pred CCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCC
Q psy15403 155 NRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKES 202 (471)
Q Consensus 155 ~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d 202 (471)
..+..--.+.|++++ .+||.++..+.++ ++.+++--||+.
T Consensus 406 rk~p~e~~~~Ie~lt-------~~DI~rva~kvlt-~~p~va~~Gd~~ 445 (472)
T KOG2067|consen 406 RKPPDEFIKKIEQLT-------PSDISRVASKVLT-GKPSVAAFGDGT 445 (472)
T ss_pred cCCHHHHHHHHHhcC-------HHHHHHHHHHHhc-CCceeccCCccc
Confidence 122233457889999 9999999999765 556677777753
No 27
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=82.90 E-value=19 Score=31.37 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=62.5
Q ss_pred cCCcceEEEEeecCCCcchh-ccCchhHHHHhhcCCCC----CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCc
Q psy15403 344 VKDVRSLLVTFPIPDLQEQH-KSGPDNYLSHLIGHEGP----GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTL 418 (471)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~Lg~~~~----~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~ 418 (471)
..+...+.+.|..-...+.. ......++.+++-.+.. ..|...|...|..+++++..+ ...+++.+..
T Consensus 9 ~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d-------~t~~~~~~~~ 81 (149)
T PF00675_consen 9 GSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRD-------STSYSASVLS 81 (149)
T ss_dssp TSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESS-------EEEEEEEEEG
T ss_pred CCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEeccc-------ceEEEEEEec
Confidence 45667778888766655433 34556778777765522 224455667888887666533 4445566666
Q ss_pred chhhcHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHhcccch
Q psy15403 419 DGINHADDIVELLFQYIKLIHDQG-PQEWIFLELFVQIIHEPC 460 (471)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~i~~~~-~~~~~~~~~k~~~i~~~~ 460 (471)
++..+++ +.|.++..++ ++++++++.|.+++.+..
T Consensus 82 ---~~~~~~l----~~l~~~~~~P~f~~~~~~~~r~~~~~ei~ 117 (149)
T PF00675_consen 82 ---EDLEKAL----ELLADMLFNPSFDEEEFEREREQILQEIE 117 (149)
T ss_dssp ---GGHHHHH----HHHHHHHHSBGGCHHHHHHHHHHHHHHHH
T ss_pred ---ccchhHH----HHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3433344 4444444445 899999999988766443
No 28
>KOG0960|consensus
Probab=78.37 E-value=12 Score=38.58 Aligned_cols=147 Identities=7% Similarity=0.071 Sum_probs=92.8
Q ss_pred HHHHHHHHHh------cCCCCCCChhHHHHHHHHc-CCe--eeEEeccc---eEEEEEEe-ChhhHHHHHHHHHHhhh--
Q psy15403 45 LAHFCEHMLF------MGTETYPAENEYNKFLSEH-SGY--SNAYTSAD---HTNYHFEV-SPDHLEKTLDIFSKFFI-- 109 (471)
Q Consensus 45 la~ll~~ll~------~Gt~~~~~~~~L~~~L~~~-g~~--l~~~t~~d---~t~~~~s~-~~~~l~~~L~ll~~~l~-- 109 (471)
++-++...++ .|++.... ..|.+.+... ++. .+..+++. -.++++.+ ....++.++..+..-..
T Consensus 288 ~~l~van~iiG~wdr~~g~g~~~~-s~La~~~~~~~l~~sfqsFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL 366 (467)
T KOG0960|consen 288 FALMVANTIIGNWDRTEGGGRNLS-SRLAQKIQQDQLCHSFQSFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRL 366 (467)
T ss_pred HHHHHHHHHhhhhhcccCCccCCc-cHHHHHHHHHHHHHHHhhhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHH
Confidence 4445444443 35555555 3666665543 332 13333332 23455555 44445444433322221
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcc
Q psy15403 110 CPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYS 189 (471)
Q Consensus 110 ~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~ 189 (471)
....+++++++.|..+...+-...+....++.+.-+++++.|.- .+..--.+.|++++ ..+++++-.+++-
T Consensus 367 ~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grr--i~l~El~~rId~vt-------~~~Vr~va~k~iy 437 (467)
T KOG0960|consen 367 ATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRR--IPLAELEARIDAVT-------AKDVREVASKYIY 437 (467)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCc--CChHHHHHHHhhcc-------HHHHHHHHHHHhh
Confidence 13789999999999999998776665555677777777765542 22112345889999 9999999999998
Q ss_pred cCCeEEEEEcCC
Q psy15403 190 SNIMGLAILGKE 201 (471)
Q Consensus 190 p~n~tLvVvGd~ 201 (471)
-....++.+|.+
T Consensus 438 d~~iAia~vG~i 449 (467)
T KOG0960|consen 438 DKDIAIAAVGPI 449 (467)
T ss_pred cCCcceeeeccc
Confidence 899999999986
No 29
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=66.03 E-value=11 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=19.4
Q ss_pred HHHHHHHhcC-CChHHHHHHHHHhcc
Q psy15403 433 QYIKLIHDQG-PQEWIFLELFVQIIH 457 (471)
Q Consensus 433 ~~l~~i~~~~-~~~~~~~~~k~~~i~ 457 (471)
+.|+.+.+.| ++++++++.|+.|+.
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll~ 31 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLLS 31 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 4566666666 799999999998863
No 30
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=62.92 E-value=17 Score=40.95 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=55.6
Q ss_pred CcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHH-HcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcH
Q psy15403 346 DVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELR-RRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHA 424 (471)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR-~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 424 (471)
..+.|.++.|.|.... .+..+.++|..++. ...|+.|| |..+.|-|.+++.......| +.+.++ +|+ -.+
T Consensus 614 ~e~alllf~p~~~~~~-~~~aa~rlla~l~~----~~f~qrlRve~qlGY~v~~~~~~~~~~~g-llf~~Q-SP~--~~~ 684 (696)
T TIGR02110 614 GEQALLLFCPLPTADV-ASEAAWRLLAQLLE----PPFFQRLRVELQLGYVVFCRYRRVADRDG-LLFALQ-SPD--ASA 684 (696)
T ss_pred CCcEEEEEecCCCCCH-HHHHHHHHHHHHhc----hhHHHHHHHhhccceEEEEeeEEcCCcce-eEEEEe-CCC--CCH
Confidence 4566777777775432 24458899999999 99999999 99999999999874422223 333344 443 566
Q ss_pred HHHHHHHHHHH
Q psy15403 425 DDIVELLFQYI 435 (471)
Q Consensus 425 ~~~~~~~~~~l 435 (471)
.++.+.+.+.|
T Consensus 685 ~~l~~h~~~fl 695 (696)
T TIGR02110 685 RELLQHIKRFL 695 (696)
T ss_pred HHHHHHHHHHh
Confidence 66777665544
No 31
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=42.02 E-value=77 Score=27.66 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=44.5
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|-++||++......+ .... .+.++++|.+-..++...+.+.+..-.-.++++++.+.+.+.+
T Consensus 72 sr~l~~Le~~GlI~R~~~~~D-----rR~~--~l~LT~~G~~~~~~~~~~~~~~~~~~l~~~ls~ee~~~l~~~L 139 (144)
T PRK11512 72 TRMLDRLVCKGWVERLPNPND-----KRGV--LVKLTTSGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLL 139 (144)
T ss_pred HHHHHHHHHCCCEEeccCccc-----CCee--EeEEChhHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 566677778999987754433 1222 3567888776666666665544444445799999998886654
No 32
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=41.99 E-value=1.2e+02 Score=21.48 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=40.9
Q ss_pred CCCChhHHHHHHHHcCCeeeEEeccceEEEEEEeChhhHHHHHHHHHHhh
Q psy15403 59 TYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDIFSKFF 108 (471)
Q Consensus 59 ~~~~~~~L~~~L~~~g~~l~~~t~~d~t~~~~s~~~~~l~~~L~ll~~~l 108 (471)
.|+....+..+|+..++.+.-....+...+.+.++.+..+.+.+.+.++.
T Consensus 4 ~Y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 4 DYSQYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp -CCCHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 35556789999999999996666666699999999999999988887764
No 33
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=40.64 E-value=1.5e+02 Score=25.75 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHhcCCCCCCChhHHHHHHH-HcC--CeeeEEec--c--ceEEEEEEeChhhHHHHHHHHHHhhhC---
Q psy15403 41 DLPGLAHFCEHMLFMGTETYPAENEYNKFLS-EHS--GYSNAYTS--A--DHTNYHFEVSPDHLEKTLDIFSKFFIC--- 110 (471)
Q Consensus 41 ~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~-~~g--~~l~~~t~--~--d~t~~~~s~~~~~l~~~L~ll~~~l~~--- 110 (471)
.......++.+++..+. . ..|...|. ..+ ..++++.. . ....+.+.+.++++..+++.+.+.+..
T Consensus 95 ~~~~~~~~l~~~l~~~~----~-s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~ 169 (184)
T PF05193_consen 95 KDYFALNLLSSLLGNGM----S-SRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENLDEAIEAILQELKRLRE 169 (184)
T ss_dssp TTHHHHHHHHHHHHCST----T-SHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCc----c-chhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccHHHHHHHHHHHHHHHHH
Confidence 34456667888888752 2 25666666 444 33333322 2 334555566666777777666666543
Q ss_pred CCCChHHHHHHHHHH
Q psy15403 111 PLFDASSTDREVNAV 125 (471)
Q Consensus 111 P~f~ee~~~~~k~~~ 125 (471)
-.+++++|+++|+.+
T Consensus 170 ~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 170 GGISEEELERAKNQL 184 (184)
T ss_dssp HCS-HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhcC
Confidence 359999999998864
No 34
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=32.30 E-value=2.6e+02 Score=26.88 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=55.7
Q ss_pred ecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHH-HHHH-----H-cCcccceeeecCC--CCCCeeEEEEE
Q psy15403 343 PVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLL-SELR-----R-RGWCNSLVGGPRS--GAKGFAFFTVT 413 (471)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~-~~lR-----~-~g~~ys~~~~~~~--~~~~~~~~~v~ 413 (471)
+......+.+.|+.+..... +..-+.+++.+|+.-+.+.+- .+|- . -|+..++.+.... .......|.|+
T Consensus 87 ~TnGI~Y~~l~fdl~~l~~e-~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is 165 (248)
T PF08367_consen 87 PTNGIVYVRLYFDLSDLPEE-DLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVIS 165 (248)
T ss_dssp --TTEEEEEEEEE-TTS-CC-CHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEE
T ss_pred CCCCeEEEEEEecCCCCCHH-HHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEE
Confidence 45677889999999866543 444589999999988777663 3332 2 2333333333221 23445778888
Q ss_pred EEcCcchhhcHHHHHHHHHHHHHH
Q psy15403 414 VDLTLDGINHADDIVELLFQYIKL 437 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~ 437 (471)
+.+-. ++++++++.+.++|..
T Consensus 166 ~k~L~---~~~~~~~~ll~eil~~ 186 (248)
T PF08367_consen 166 AKCLD---EKLDEAFELLSEILTE 186 (248)
T ss_dssp EEEEG---GGHHHHHHHHHHHHHC
T ss_pred EEeHh---hhHHHHHHHHHHHHhc
Confidence 88888 6777777777666644
No 35
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=32.16 E-value=1.4e+02 Score=25.81 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=46.4
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|-++||+.......+ .+ ...+.++++|.+...++.+...+....+ -.++++++.+.+...+
T Consensus 64 t~~v~~Le~~GlV~r~~~~~D--rR-----~~~l~LT~~G~~~~~~~~~~~~~~~~~~-~~~l~~ee~~~l~~~l 130 (144)
T PRK03573 64 VRTLDQLEEKGLISRQTCASD--RR-----AKRIKLTEKAEPLISEVEAVINKTRAEI-LHGISAEEIEQLITLI 130 (144)
T ss_pred HHHHHHHHHCCCEeeecCCCC--cC-----eeeeEEChHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHH
Confidence 455667778999987754332 11 2336788888877777777776666665 4699999988886664
No 36
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=25.90 E-value=1.9e+02 Score=22.36 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=41.6
Q ss_pred CCCCCCChhHHHHHHHHcCCee-eEEeccceEEEEEEeChhhHHHHHHHHHHhhh
Q psy15403 56 GTETYPAENEYNKFLSEHSGYS-NAYTSADHTNYHFEVSPDHLEKTLDIFSKFFI 109 (471)
Q Consensus 56 Gt~~~~~~~~L~~~L~~~g~~l-~~~t~~d~t~~~~s~~~~~l~~~L~ll~~~l~ 109 (471)
|..++.. ++.+.|.+.++++ +-.++....++++....+.++.++.-|...+-
T Consensus 13 G~~g~d~--~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p 65 (71)
T cd04910 13 GEVGYDL--EILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFP 65 (71)
T ss_pred CChhHHH--HHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCc
Confidence 4445543 7999999999886 66777889999999999999999988876653
No 37
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=24.68 E-value=95 Score=28.39 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHhccc
Q psy15403 429 ELLFQYIKLIHDQGPQEWIFLELFVQIIHE 458 (471)
Q Consensus 429 ~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~ 458 (471)
.+|.+.|+.|++.|++.++|+.....+++.
T Consensus 58 taI~~aLr~mkKsGi~k~EL~~~~~eil~g 87 (176)
T PF06576_consen 58 TAINEALRRMKKSGISKPELEAFLREILNG 87 (176)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhCc
Confidence 678889999999999999999987777653
No 38
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=22.54 E-value=3.5e+02 Score=21.33 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=38.7
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHhccc
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHD-QGPQEWIFLELFVQIIHE 458 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~~~~~~~~k~~~i~~ 458 (471)
+++++.|.+.||+..... . .+.+++.+.+....+.......-..+.. .++++++++.....+.+.
T Consensus 17 s~~l~~L~~~glI~r~~~------~-------~~~lT~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~l~~~ 82 (96)
T smart00529 17 TQMLKKLEKDGLVEYEPY------R-------GITLTEKGRRLARRLLRKHRLLERFLVDVLGVDEEEVHEEAERLEHV 82 (96)
T ss_pred HHHHHHHHHCCCEEEcCC------C-------ceEechhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence 455566777888877432 1 2556676655555565544433444432 379988888777655433
No 39
>PRK10870 transcriptional repressor MprA; Provisional
Probab=20.71 E-value=2.7e+02 Score=25.31 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=47.4
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|-++||+.......+ ... +.+.++++|.+.++++.....+.+..+ -.++++++.+.+...+
T Consensus 89 sr~v~rLe~kGlV~R~~~~~D-----rR~--~~v~LT~~G~~~~~~i~~~~~~~~~~~-~~~ls~~e~~~l~~~L 155 (176)
T PRK10870 89 TRIADELEKRGWIERRESDND-----RRC--LHLQLTEKGHEFLREVLPPQHNCLHQL-WSALSTTEKDQLEQIT 155 (176)
T ss_pred HHHHHHHHHCCCEEecCCCCC-----CCe--eEEEECHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Confidence 556677778999877644322 112 236788988888888888888888876 4578988887775543
Done!