Query psy15403
Match_columns 471
No_of_seqs 149 out of 1605
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 20:08:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eoq_A Putative zinc protease; 100.0 5.3E-48 1.8E-52 398.5 34.2 337 11-463 3-346 (406)
2 3ami_A Zinc peptidase; alpha/b 100.0 3.4E-46 1.2E-50 389.4 37.4 342 12-463 9-363 (445)
3 3hdi_A Processing protease; CA 100.0 4.8E-46 1.7E-50 385.0 33.4 335 11-462 3-345 (421)
4 1q2l_A Protease III; hydrolase 100.0 1.7E-45 5.9E-50 418.0 38.2 345 12-461 23-379 (939)
5 1pp9_A Ubiquinol-cytochrome C 100.0 7.7E-44 2.6E-48 371.7 34.2 335 12-461 16-367 (446)
6 1hr6_B Beta-MPP, mitochondrial 100.0 2.1E-43 7.3E-48 367.3 34.5 337 12-462 9-368 (443)
7 3cww_A Insulysin, insulin-degr 100.0 2.5E-43 8.7E-48 402.5 37.3 350 12-459 37-393 (990)
8 3gwb_A Peptidase M16 inactive 100.0 4.6E-42 1.6E-46 355.6 33.5 336 11-462 15-361 (434)
9 1hr6_A Alpha-MPP, mitochondria 100.0 4.7E-42 1.6E-46 361.7 33.3 340 11-461 7-367 (475)
10 3amj_B Zinc peptidase inactive 100.0 8E-42 2.7E-46 353.1 31.9 335 12-463 6-355 (424)
11 1pp9_B Ubiquinol-cytochrome C 100.0 7.7E-40 2.6E-44 339.4 34.0 331 12-462 26-371 (439)
12 2fge_A Atprep2;, zinc metallop 100.0 1.5E-40 5.3E-45 379.9 27.9 339 13-459 41-408 (995)
13 3s5m_A Falcilysin; M16 metallo 100.0 7.9E-40 2.7E-44 375.7 32.1 366 12-458 89-513 (1193)
14 3d3y_A Uncharacterized protein 100.0 2.4E-39 8.1E-44 333.7 31.9 333 13-462 6-364 (425)
15 3cx5_A Cytochrome B-C1 complex 100.0 3.1E-39 1.1E-43 333.7 30.0 327 12-461 3-350 (431)
16 3go9_A Insulinase family prote 100.0 6.5E-38 2.2E-42 332.4 28.8 334 12-464 28-381 (492)
17 3cx5_B Cytochrome B-C1 complex 100.0 3.3E-33 1.1E-37 282.0 25.4 289 32-462 20-312 (352)
18 1q2l_A Protease III; hydrolase 99.9 1.9E-24 6.5E-29 245.2 16.0 323 13-461 503-841 (939)
19 2fge_A Atprep2;, zinc metallop 99.9 6.4E-23 2.2E-27 234.3 19.9 328 14-459 557-912 (995)
20 3cww_A Insulysin, insulin-degr 99.9 5.9E-21 2E-25 217.8 17.9 325 14-459 523-864 (990)
21 3s5m_A Falcilysin; M16 metallo 99.7 8.6E-19 2.9E-23 201.6 7.5 341 17-459 725-1108(1193)
22 3ih6_A Putative zinc protease; 99.5 1.4E-13 4.9E-18 126.9 9.6 122 339-464 16-137 (197)
23 3ih6_A Putative zinc protease; 97.8 0.00014 4.8E-09 66.1 10.7 141 46-201 44-194 (197)
24 3eoq_A Putative zinc protease; 97.4 0.00034 1.2E-08 70.8 8.5 141 46-201 255-404 (406)
25 3cx5_A Cytochrome B-C1 complex 97.3 0.0011 3.7E-08 67.2 11.9 128 65-202 275-414 (431)
26 3gwb_A Peptidase M16 inactive 97.3 0.0015 5.1E-08 66.3 11.7 144 45-201 268-421 (434)
27 3hdi_A Processing protease; CA 97.3 0.00076 2.6E-08 68.4 9.4 142 46-202 254-405 (421)
28 1hr6_A Alpha-MPP, mitochondria 97.2 0.0029 1E-07 65.5 12.9 109 84-201 314-437 (475)
29 1hr6_B Beta-MPP, mitochondrial 97.1 0.0043 1.5E-07 63.2 13.7 128 65-201 289-428 (443)
30 1pp9_A Ubiquinol-cytochrome C 97.1 0.0034 1.2E-07 64.3 12.8 128 65-202 293-429 (446)
31 3amj_B Zinc peptidase inactive 97.0 0.002 6.9E-08 65.2 10.0 144 46-202 262-415 (424)
32 1pp9_B Ubiquinol-cytochrome C 96.9 0.0087 3E-07 60.7 13.6 127 65-201 294-430 (439)
33 3ami_A Zinc peptidase; alpha/b 96.7 0.015 5E-07 59.4 13.3 141 47-201 269-422 (445)
34 3d3y_A Uncharacterized protein 95.7 0.044 1.5E-06 55.0 10.6 140 45-200 274-421 (425)
35 3go9_A Insulinase family prote 94.3 0.25 8.6E-06 51.3 11.7 109 83-200 327-446 (492)
36 3cx5_B Cytochrome B-C1 complex 58.3 51 0.0017 31.3 10.2 101 346-460 11-116 (352)
37 3deu_A Transcriptional regulat 32.7 89 0.003 26.4 6.5 67 381-455 86-152 (166)
38 4aik_A Transcriptional regulat 31.7 93 0.0032 25.9 6.4 67 381-455 64-130 (151)
39 2hr3_A Probable transcriptiona 31.4 71 0.0024 26.0 5.5 68 381-455 68-135 (147)
40 3e6m_A MARR family transcripti 30.6 1E+02 0.0035 25.6 6.5 67 381-455 85-151 (161)
41 3hsr_A HTH-type transcriptiona 30.5 60 0.0021 26.4 4.9 65 381-455 68-132 (140)
42 3eco_A MEPR; mutlidrug efflux 28.7 1.1E+02 0.0038 24.4 6.2 67 381-455 65-131 (139)
43 2nyx_A Probable transcriptiona 27.7 1.2E+02 0.0041 25.4 6.5 67 381-455 77-143 (168)
44 3oop_A LIN2960 protein; protei 25.8 1.2E+02 0.0042 24.4 6.0 67 381-455 69-135 (143)
45 3k0l_A Repressor protein; heli 25.1 1.2E+02 0.0042 25.1 6.0 67 381-455 78-144 (162)
46 3fm5_A Transcriptional regulat 24.7 1E+02 0.0035 25.2 5.3 67 381-455 72-138 (150)
47 3bja_A Transcriptional regulat 24.6 1.6E+02 0.0056 23.3 6.5 67 381-455 65-131 (139)
48 3s2w_A Transcriptional regulat 24.6 1.4E+02 0.0048 24.6 6.2 67 381-455 82-148 (159)
49 2nnn_A Probable transcriptiona 24.3 2.2E+02 0.0077 22.4 7.3 67 381-455 70-136 (140)
50 3bro_A Transcriptional regulat 24.1 1.4E+02 0.0047 23.8 6.0 67 381-455 68-134 (141)
51 3ech_A MEXR, multidrug resista 23.5 1.3E+02 0.0043 24.3 5.6 67 381-455 69-135 (142)
52 2fbh_A Transcriptional regulat 23.1 1.7E+02 0.0059 23.3 6.4 67 381-455 70-136 (146)
53 2eth_A Transcriptional regulat 23.1 1.6E+02 0.0056 24.0 6.3 67 381-455 76-142 (154)
54 1okr_A MECI, methicillin resis 22.7 1.9E+02 0.0064 22.7 6.4 66 381-455 46-120 (123)
55 3bj6_A Transcriptional regulat 22.6 1.9E+02 0.0064 23.4 6.6 67 381-455 72-138 (152)
56 1s3j_A YUSO protein; structura 21.9 1.8E+02 0.0061 23.6 6.3 67 381-455 69-135 (155)
57 3bpv_A Transcriptional regulat 21.4 2.4E+02 0.0082 22.2 6.9 67 381-455 61-127 (138)
58 1g6u_A Domain swapped dimer; d 21.3 1.6E+02 0.0055 19.1 4.3 26 428-453 2-27 (48)
59 1jgs_A Multiple antibiotic res 21.1 1.6E+02 0.0054 23.4 5.7 67 381-455 66-133 (138)
60 1lj9_A Transcriptional regulat 21.0 1.7E+02 0.0058 23.4 5.9 67 381-455 61-127 (144)
61 1nvp_B Transcription initiatio 20.8 1.3E+02 0.0044 21.3 4.2 29 424-455 17-45 (57)
62 1nh2_B Transcription initiatio 20.6 1.2E+02 0.0041 21.1 3.9 29 424-455 13-41 (53)
No 1
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=5.3e-48 Score=398.47 Aligned_cols=337 Identities=20% Similarity=0.228 Sum_probs=289.6
Q ss_pred CceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEecc
Q psy15403 11 PSTWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSA 83 (471)
Q Consensus 11 ~~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~ 83 (471)
..+-++||++|.+...+.... ++|+++|+.+..|++||++||+++||++++. .++.+.++.+|+.+|++|+.
T Consensus 3 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~-~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 3 REAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDA-LAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCH-HHHHHHHHHTTCEEEEEECS
T ss_pred eeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCCccceecC
Confidence 356789999997766655333 9999999999999999999999999999977 69999999999999999999
Q ss_pred ceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChh
Q psy15403 84 DHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKE 163 (471)
Q Consensus 84 d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e 163 (471)
++|.|++++++++++.+|+++.+++ +|.|++++|+++++.+.+|++...++|...+.+.+.+.+|++|||+++..|+++
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCccccccccee
Q psy15403 164 TLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYV 243 (471)
Q Consensus 164 ~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
+|.+++ .++|++||++||+|+||+|+|+||+|+++++++++++|+.|+..+.+.. ..+.. ..+....+
T Consensus 161 ~i~~~t-------~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~---~~~~~--~~~~~~~~ 228 (406)
T 3eoq_A 161 SITALT-------REGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA---YPPLT--PAFGVEER 228 (406)
T ss_dssp HHHHCC-------HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC---CCCCC--CCCEEEEE
T ss_pred HHhhCC-------HHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC---CCCCC--CCCceEEE
Confidence 999999 9999999999999999999999999999999999999999986432211 11110 00111111
Q ss_pred ccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCC
Q psy15403 244 TPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTP 323 (471)
Q Consensus 244 ~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
..+.
T Consensus 229 ~~~~---------------------------------------------------------------------------- 232 (406)
T 3eoq_A 229 PYEK---------------------------------------------------------------------------- 232 (406)
T ss_dssp ECTT----------------------------------------------------------------------------
T ss_pred ecCC----------------------------------------------------------------------------
Confidence 1122
Q ss_pred CCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeecCCC
Q psy15403 324 EWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSG 403 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~~~~ 403 (471)
..++.+.+.|+.+...+ .++.++.+++.+|||+++|+|+++||++||+|+++++...
T Consensus 233 ---------------------~~q~~~~~~~~~~~~~~-~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~- 289 (406)
T 3eoq_A 233 ---------------------ARALYLVALFPGVAYQE-EARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEE- 289 (406)
T ss_dssp ---------------------CSSEEEEEEEECCCTTC-TTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEE-
T ss_pred ---------------------ccceEEEEEecCCCCCC-chHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecc-
Confidence 14455666666554322 3566899999999999999999999999999999988764
Q ss_pred CCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhhh
Q psy15403 404 AKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNI 463 (471)
Q Consensus 404 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~~ 463 (471)
..+.|.|.+++.+++ ++++++++.+.++|+.|+++|+++++|+++|++++.....+.
T Consensus 290 ~~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~ 346 (406)
T 3eoq_A 290 ADRAGTFHAYVQADP---ARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAG 346 (406)
T ss_dssp CSSCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCceEEEEEEEeCc---chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Confidence 466799999999999 678889999999999999999999999999999988776543
No 2
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=3.4e-46 Score=389.44 Aligned_cols=342 Identities=15% Similarity=0.204 Sum_probs=291.7
Q ss_pred ceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccc
Q psy15403 12 STWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSAD 84 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d 84 (471)
..-++||++|.++..+.... ++|++.|+.+..|++|+++||+++||++++. .+|.+.++++|+.++++|+.+
T Consensus 9 ~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~-~~l~~~l~~~g~~~na~t~~d 87 (445)
T 3ami_A 9 ETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGP-GEFSKRVAAMGGRDNAFTTRD 87 (445)
T ss_dssp EEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCT-THHHHHHHHTTCEEEEEECSS
T ss_pred EEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCH-HHHHHHHHHhCCccccccCCC
Confidence 34589999997665433322 9999999999999999999999999999998 699999999999999999999
Q ss_pred eEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHcCCCCCCCCCCCCChh
Q psy15403 85 HTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHE-KNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKE 163 (471)
Q Consensus 85 ~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~-~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e 163 (471)
++.|.+++++++++.+|+++++++.+|.|++++|+++++.+.++++ ...++|...+.+.+.+.+|++|||+++..|+++
T Consensus 88 ~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e 167 (445)
T 3ami_A 88 YTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMN 167 (445)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999 678899999999999999999999999999999
Q ss_pred hhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCccccccccee
Q psy15403 164 TLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYV 243 (471)
Q Consensus 164 ~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
+|.+++ .++|++||++||+|+||+|+|+||+|+++++++|+++|+.||....+.......+.
T Consensus 168 ~l~~it-------~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~----------- 229 (445)
T 3ami_A 168 DIQNMT-------AQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQ----------- 229 (445)
T ss_dssp HHHHCC-------HHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCC-----------
T ss_pred HHhhCC-------HHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC-----------
Confidence 999999 99999999999999999999999999999999999999999865322111000000
Q ss_pred ccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCC
Q psy15403 244 TPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTP 323 (471)
Q Consensus 244 ~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
T Consensus 230 -------------------------------------------------------------------------------- 229 (445)
T 3ami_A 230 -------------------------------------------------------------------------------- 229 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccccceEEEeecCCcceEEEEeecCC---CcchhccCchhHHHHhhcCCCCCcHHHHHH-HcCcccceeee
Q psy15403 324 EWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPD---LQEQHKSGPDNYLSHLIGHEGPGSLLSELR-RRGWCNSLVGG 399 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR-~~g~~ys~~~~ 399 (471)
.. ....+.+.....++.+.+.|+.+. .....+..++.+++.+|||+.+|+|++.|| ++||+|+++++
T Consensus 230 -------~~--~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~ 300 (445)
T 3ami_A 230 -------QA--GVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAG 300 (445)
T ss_dssp -------CC--SCEEEEEEEECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEE
T ss_pred -------CC--CceEEEEecCCCccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEee
Confidence 00 011222223345667888888777 332556778999999999999999999999 69999999988
Q ss_pred cCCCCCC-eeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhhh
Q psy15403 400 PRSGAKG-FAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNI 463 (471)
Q Consensus 400 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~~ 463 (471)
......+ .|.|.|++.+.++ ++++++++.+.++|++|+++|+++++|+++|++++.....+.
T Consensus 301 ~~~~~~~~~g~~~i~~~~~~~--~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~ 363 (445)
T 3ami_A 301 YDSLSRGQQGLFILEGVPSKG--VTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQ 363 (445)
T ss_dssp CCCCCSSCCEEEEEEEEECTT--CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCCeEEEEEEECCC--CCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 7643456 7999999999883 358899999999999999999999999999999988776544
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=4.8e-46 Score=385.01 Aligned_cols=335 Identities=20% Similarity=0.262 Sum_probs=288.9
Q ss_pred CceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEecc
Q psy15403 11 PSTWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSA 83 (471)
Q Consensus 11 ~~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~ 83 (471)
..+-++||++|.+...+.... ++|+++|+.+..|++||++||+++||++++. .++.+.++.+|+.++++++.
T Consensus 3 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~-~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 3 NTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSA-QEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp EEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBH-HHHHHHHHTTTSCEEEEECS
T ss_pred eEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCH-HHHHHHHHHhCCceeeeecc
Confidence 346689999997666554332 9999999999999999999999999999987 69999999999999999999
Q ss_pred ceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChh
Q psy15403 84 DHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKE 163 (471)
Q Consensus 84 d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e 163 (471)
+++.|++++++++++.+|+++.+++.+|.|++++|+++++.+.++++...++|...+.+.+.+.+|++|||+++..|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCccccccccee
Q psy15403 164 TLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYV 243 (471)
Q Consensus 164 ~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
+|.+++ .++|++||++||+|+||+|+|+||+| ++++++++++|+.|+..+.++.. ..+.. ..
T Consensus 162 ~l~~it-------~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~-~~~~~----~~----- 223 (421)
T 3hdi_A 162 TLNSFN-------EGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQG-EKPMF----LP----- 223 (421)
T ss_dssp HHHHCC-------HHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCC-CCCCC----CC-----
T ss_pred HHHhCC-------HHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCC-CCCCC----CC-----
Confidence 999999 99999999999999999999999999 99999999999999866432211 11011 00
Q ss_pred ccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCC
Q psy15403 244 TPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTP 323 (471)
Q Consensus 244 ~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
T Consensus 224 -------------------------------------------------------------------------------- 223 (421)
T 3hdi_A 224 -------------------------------------------------------------------------------- 223 (421)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHH-cCcccceeeecCC
Q psy15403 324 EWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRR-RGWCNSLVGGPRS 402 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~-~g~~ys~~~~~~~ 402 (471)
......+..+++.+.+.|+.+... ..+..++.+++.+|||+.+++|+++||+ +||+|+++++...
T Consensus 224 -------------~~~~~~~~~~q~~v~~~~~~~~~~-~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~ 289 (421)
T 3hdi_A 224 -------------NRIVRKKETEQAHLCLGYPGLPIG-DKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSS 289 (421)
T ss_dssp -------------CEEEEECCCSEEEEEEEEECCCTT-CTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEE
T ss_pred -------------ceEEecCCCCceEEEEEEecCCCC-CchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecc
Confidence 111122233455666666655432 3466689999999999999999999995 8999999987764
Q ss_pred CCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhh
Q psy15403 403 GAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFN 462 (471)
Q Consensus 403 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~ 462 (471)
..+.|.|.+++.+++ ++++++++.+.++|+.++++|+++++|+++|.+++.....+
T Consensus 290 -~~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~ 345 (421)
T 3hdi_A 290 -FRDSGMLTIYAGTGH---DQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLS 345 (421)
T ss_dssp -CSSCEEEEEEEEEEG---GGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred -cCCCceEEEEEEeCH---HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Confidence 366799999999999 67888999999999999999999999999999998776543
No 4
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.7e-45 Score=418.04 Aligned_cols=345 Identities=29% Similarity=0.425 Sum_probs=300.8
Q ss_pred ceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccc
Q psy15403 12 STWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSAD 84 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d 84 (471)
..-++|||+|.++..+.... ++|+++|+.+.+|+|||++||+|.||++|+...++.++++.+|+++|++|+.+
T Consensus 23 ~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d 102 (939)
T 1q2l_A 23 AIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPY 102 (939)
T ss_dssp EEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSS
T ss_pred EEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCC
Confidence 44689999996666554444 99999999999999999999999999999965699999999999999999999
Q ss_pred eEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhh
Q psy15403 85 HTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKET 164 (471)
Q Consensus 85 ~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~ 164 (471)
+|.|++++++++++.+|+++++++.+|.|++++++++++.+.+|++.+.++|...+.+.+..++|++|||+++..|+.++
T Consensus 103 ~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~ 182 (939)
T 1q2l_A 103 RTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLET 182 (939)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred hcc----cCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCccccccc
Q psy15403 165 LET----IPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTR 240 (471)
Q Consensus 165 I~~----it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~ 240 (471)
|.. ++ .++|++||++||+|+||+|+|+||+|+++++++++++|+.|+....+.+.+..++.
T Consensus 183 l~~~~~~~~-------~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~-------- 247 (939)
T 1q2l_A 183 LSDKPGNPV-------QQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVV-------- 247 (939)
T ss_dssp HSCBTTBCH-------HHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSC--------
T ss_pred HhcCCCchH-------HHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCC--------
Confidence 999 88 99999999999999999999999999999999999999999865432211111111
Q ss_pred ceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCc
Q psy15403 241 GYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNV 320 (471)
Q Consensus 241 ~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
T Consensus 248 -------------------------------------------------------------------------------- 247 (939)
T 1q2l_A 248 -------------------------------------------------------------------------------- 247 (939)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeec
Q psy15403 321 TTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGP 400 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~ 400 (471)
........+...+..++..+.+.|+.|.....++..++.+++++||++++|+|++.||++||||+++++.
T Consensus 248 ----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~ 317 (939)
T 1q2l_A 248 ----------TDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANS 317 (939)
T ss_dssp ----------CGGGSSEEEEECCSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEE
T ss_pred ----------CHHHcCEEEEEEeCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeecc
Confidence 1111122333445567788999999988776667789999999999999999999999999999999874
Q ss_pred C-CCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchh
Q psy15403 401 R-SGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCF 461 (471)
Q Consensus 401 ~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~ 461 (471)
. ......|.|.|++.+++++.++++++++.++++|+.++++|+++++++++|+++.....+
T Consensus 318 ~~~~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~ 379 (939)
T 1q2l_A 318 DPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRY 379 (939)
T ss_dssp ESSTTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence 2 234678999999999997777999999999999999999999999999999998776654
No 5
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=7.7e-44 Score=371.74 Aligned_cols=335 Identities=16% Similarity=0.133 Sum_probs=284.4
Q ss_pred ceecCCCcEEEEEeccCCCC------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccce
Q psy15403 12 STWSPEAMQYKQGYLSDPKD------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADH 85 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~ 85 (471)
.+-++||++|.+...+.+.. ++|++.|+.+..|++||++||++.||++++. .++.+.++.+|+.++++++.++
T Consensus 16 ~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~-~~~~~~l~~~G~~~na~t~~d~ 94 (446)
T 1pp9_A 16 VSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREH 94 (446)
T ss_dssp EEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTT-THHHHHHHHTTCEEEEEECSSC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCH-HHHHHHHHHcCCEEEEEEcCCe
Confidence 45689999997766554432 9999999999999999999999999999998 5899999999999999999999
Q ss_pred EEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhh
Q psy15403 86 TNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETL 165 (471)
Q Consensus 86 t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I 165 (471)
+.|++++++++++.+|+++.+++.+|.|++++|+++++.+.++++...++|...+.+.+...+|++|||+++..|+.++|
T Consensus 95 t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l 174 (446)
T 1pp9_A 95 TAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENV 174 (446)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCC--CCCCCccccccccee
Q psy15403 166 ETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWT--THPYGKDQLKTRGYV 243 (471)
Q Consensus 166 ~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~--~~~~~~~~~~~~~~~ 243 (471)
.+++ .++|++||++||+|+||+|+|+||+|+++++++++++|+.|+....+..... .++. ..
T Consensus 175 ~~~~-------~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~----~~----- 238 (446)
T 1pp9_A 175 RKLS-------RADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRF----TG----- 238 (446)
T ss_dssp HHCC-------HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCC----CC-----
T ss_pred HhCC-------HHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCC----CC-----
Confidence 9999 9999999999999999999999999999999999999999986543221100 0000 00
Q ss_pred ccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCC
Q psy15403 244 TPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTP 323 (471)
Q Consensus 244 ~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
T Consensus 239 -------------------------------------------------------------------------------- 238 (446)
T 1pp9_A 239 -------------------------------------------------------------------------------- 238 (446)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcC---------CCCCcHHHHHHHcCccc
Q psy15403 324 EWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGH---------EGPGSLLSELRRRGWCN 394 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~---------~~~~~L~~~lR~~g~~y 394 (471)
.......+..+++.+.+.|+.+... ..++.++.+++.+||+ +.+|+|+++||++|++|
T Consensus 239 ------------~~~~~~~~~~~~~~v~~~~~~~~~~-~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay 305 (446)
T 1pp9_A 239 ------------SQICHREDGLPLAHVAIAVEGPGWA-HPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQ 305 (446)
T ss_dssp ------------EEEEEEETTSSSEEEEEEEEECCTT-CTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCS
T ss_pred ------------ceEEEecCCccceEEEEEEecCCCC-CccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeE
Confidence 0011112223456667777766442 2356689999999986 57899999999999999
Q ss_pred ceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchh
Q psy15403 395 SLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCF 461 (471)
Q Consensus 395 s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~ 461 (471)
++++.... ....|.|.+++.+++ ++++++++.+.++|+.+++ |+++++|+++|.+++.....
T Consensus 306 ~~~s~~~~-~~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~-~~t~~el~~ak~~~~~~~~~ 367 (446)
T 1pp9_A 306 SFQTFNIC-YADTGLLGAHFVCDH---MSIDDMMFVLQGQWMRLCT-SATESEVLRGKNLLRNALVS 367 (446)
T ss_dssp EEEEEEEE-CSSCEEEEEEEEECT---TSHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccc-CCCCeEEEEEEEECH---HHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 99887653 355689999999888 6888999999999999998 69999999999999876654
No 6
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=2.1e-43 Score=367.27 Aligned_cols=337 Identities=18% Similarity=0.178 Sum_probs=286.1
Q ss_pred ceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccc
Q psy15403 12 STWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSAD 84 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d 84 (471)
..-++||++|.+...+.+.. ++|++.|+.+..|++|+++||++.||++++. .++.+.++.+|+.++++++.+
T Consensus 9 ~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~-~~l~~~l~~~g~~~na~t~~~ 87 (443)
T 1hr6_B 9 TSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQ-QGIELEIENIGSHLNAYTSRE 87 (443)
T ss_dssp EEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBH-HHHHHHHHHTTCEEEEEECSS
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCH-HHHHHHHHHcCCeEEEEECCC
Confidence 34579999998776665533 9999999999999999999999999999987 689999999999999999999
Q ss_pred eEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhh
Q psy15403 85 HTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKET 164 (471)
Q Consensus 85 ~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~ 164 (471)
++.|++++++++++.+|+++.+++.+|.|++++|+++++.+.++++...++|...+.+.+.+.+|++|||+++..|+.++
T Consensus 88 ~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 167 (443)
T 1hr6_B 88 NTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKN 167 (443)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHH
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred hcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCC----CCCCCccccccc
Q psy15403 165 LETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWT----THPYGKDQLKTR 240 (471)
Q Consensus 165 I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~----~~~~~~~~~~~~ 240 (471)
|.+++ .++|++||+++|+|+||+|+|+||+|+++++++++++|+.|+....+..... .+++. +
T Consensus 168 i~~~~-------~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~----~-- 234 (443)
T 1hr6_B 168 IKSIT-------RTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFC----R-- 234 (443)
T ss_dssp HHHCC-------HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCC----C--
T ss_pred HhhCC-------HHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCC----C--
Confidence 99999 9999999999999999999999999999999999999999986543221110 00000 0
Q ss_pred ceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCc
Q psy15403 241 GYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNV 320 (471)
Q Consensus 241 ~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
T Consensus 235 -------------------------------------------------------------------------------- 234 (443)
T 1hr6_B 235 -------------------------------------------------------------------------------- 234 (443)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcC---------CCCCcHHHHHH-Hc
Q psy15403 321 TTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGH---------EGPGSLLSELR-RR 390 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~---------~~~~~L~~~lR-~~ 390 (471)
+......+..+++.+.+.|+.+.. ...+..++.+++.+||+ +.+++|+++|| ++
T Consensus 235 ---------------~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~ 298 (443)
T 1hr6_B 235 ---------------GERFIKENTLPTTHIAIALEGVSW-SAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNG 298 (443)
T ss_dssp ---------------EEEEEECTTCSEEEEEEEEECCCT-TCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTT
T ss_pred ---------------CeEEeccCCccceEEEEEEecCCC-CCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHc
Confidence 000001122345566677776543 33466689999999986 56799999999 69
Q ss_pred CcccceeeecCCCCCCeeEEEEEEEcC--cchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhh
Q psy15403 391 GWCNSLVGGPRSGAKGFAFFTVTVDLT--LDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFN 462 (471)
Q Consensus 391 g~~ys~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~ 462 (471)
||+|++++.... ....|.|.+++.++ + ++++++++.+.++|+.|+++|+++++|+++|.+++......
T Consensus 299 glay~~~~~~~~-~~~~g~~~i~~~~~~~~---~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~ 368 (443)
T 1hr6_B 299 SLANSYMSFSTS-YADSGLWGMYIVTDSNE---HNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLS 368 (443)
T ss_dssp CSCSEEEEEEEE-CSSCEEEEEEEEEETTT---CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeeecC-CCCceEEEEEEEecCCh---hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999887664 35679999999988 7 68888999999999999999999999999999998766543
No 7
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=2.5e-43 Score=402.45 Aligned_cols=350 Identities=55% Similarity=0.940 Sum_probs=296.9
Q ss_pred ceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccc
Q psy15403 12 STWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSAD 84 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d 84 (471)
...++|||+|.++..++... ++|++.||++..|+||+++||+|.||++|+..++|.++++++|+.+|++|+.|
T Consensus 37 ~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d 116 (990)
T 3cww_A 37 GLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116 (990)
T ss_dssp EEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSS
T ss_pred EEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECCC
Confidence 45688999986555444443 99999999999999999999999999999986799999999999999999999
Q ss_pred eEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhh
Q psy15403 85 HTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKET 164 (471)
Q Consensus 85 ~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~ 164 (471)
+|+|.+++++++++.+|+++++++.+|.|++++|++++..+.+|++.+.+++...+.+.+..+++++|||+++..|++++
T Consensus 117 ~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~ 196 (990)
T 3cww_A 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYT 196 (990)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHH
T ss_pred ceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999989999988889999999999999999999999
Q ss_pred hcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccceec
Q psy15403 165 LETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVT 244 (471)
Q Consensus 165 I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (471)
|..+....+.++.++|++||++||+|+||+|+|+||+|+++++++|+++|+.|+.+..+.+.+..+++
T Consensus 197 l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~------------ 264 (990)
T 3cww_A 197 LETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPF------------ 264 (990)
T ss_dssp HTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSS------------
T ss_pred HhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCC------------
Confidence 99991111111299999999999999999999999999999999999999999865432111111011
Q ss_pred cCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCC
Q psy15403 245 PVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPE 324 (471)
Q Consensus 245 ~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (471)
T Consensus 265 -------------------------------------------------------------------------------- 264 (990)
T 3cww_A 265 -------------------------------------------------------------------------------- 264 (990)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeecCCCC
Q psy15403 325 WTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSGA 404 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~~~~~ 404 (471)
.....+..+...+..++..+.+.|+.|.....++..++.+++++||+++.++|+..||++||+|+++++.....
T Consensus 265 ------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~ 338 (990)
T 3cww_A 265 ------QEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGA 338 (990)
T ss_dssp ------CGGGSSEEEEECCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEE
T ss_pred ------ChHHcCeEEEEEECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccccCC
Confidence 11111233344455577889999999887766678899999999998888889999999999999998866433
Q ss_pred CCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccc
Q psy15403 405 KGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEP 459 (471)
Q Consensus 405 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~ 459 (471)
.+++.|.|++.+++++.++++++++.++++|+.|++.|+++++++++|.....+.
T Consensus 339 ~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~ 393 (990)
T 3cww_A 339 RGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAF 393 (990)
T ss_dssp TTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 5579999999999877779999999999999999999999999999887655443
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=4.6e-42 Score=355.61 Aligned_cols=336 Identities=15% Similarity=0.104 Sum_probs=282.9
Q ss_pred CceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEecc
Q psy15403 11 PSTWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSA 83 (471)
Q Consensus 11 ~~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~ 83 (471)
...-++||++|.++..+.... ++|++.| ++..|++|+++||++.|+++++. .++.+.++.+|+.++++++.
T Consensus 15 ~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~-~~l~~~l~~~g~~~~a~t~~ 92 (434)
T 3gwb_A 15 QTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDV-GAIAQGFEGLGADFGNGAYK 92 (434)
T ss_dssp EEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEH-HHHHHHHHTTTCEEEEEECS
T ss_pred EEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCH-HHHHHHHHHhCCEEEeeecC
Confidence 346678999997666544222 9999999 89999999999999999999987 69999999999999999999
Q ss_pred ceEEEEEEeChhh--HHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy15403 84 DHTNYHFEVSPDH--LEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGN 161 (471)
Q Consensus 84 d~t~~~~s~~~~~--l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt 161 (471)
+++.|++++++++ ++.+|+++.+++.+|.|++++|+++++.+.++++...++|...+.+.+...+|++|||+++..|+
T Consensus 93 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~ 172 (434)
T 3gwb_A 93 DMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGD 172 (434)
T ss_dssp SCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCC
T ss_pred CeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 9999999999888 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccc
Q psy15403 162 KETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRG 241 (471)
Q Consensus 162 ~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~ 241 (471)
.++|.+++ .++|++||+++|+|+||+|+|+||+|.+++.++++++|+.|+..+.+.......+. ....
T Consensus 173 ~~~l~~it-------~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~- 240 (434)
T 3gwb_A 173 AKSIPPIT-------LAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEP----KASI- 240 (434)
T ss_dssp TTTTTTCC-------HHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCC----CCEE-
T ss_pred HHHHHhCC-------HHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC----CCce-
Confidence 99999999 99999999999999999999999999999999999999999866422211000000 0000
Q ss_pred eeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcC
Q psy15403 242 YVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVT 321 (471)
Q Consensus 242 ~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
T Consensus 241 -------------------------------------------------------------------------------- 240 (434)
T 3gwb_A 241 -------------------------------------------------------------------------------- 240 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCC-CCCcHHHHHHH-cCcccceeee
Q psy15403 322 TPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHE-GPGSLLSELRR-RGWCNSLVGG 399 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~-~~~~L~~~lR~-~g~~ys~~~~ 399 (471)
..+.....++.+.+.|+.+... ..+..++.+++.+||++ .+++|+++||+ +|++|+++++
T Consensus 241 -----------------~~~~~~~~~~~v~~~~~~~~~~-~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~ 302 (434)
T 3gwb_A 241 -----------------GHIEFPSSQTSLMLAQLGIDRD-DPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSG 302 (434)
T ss_dssp -----------------EEEECCSSEEEEEEEEECCBTT-CTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEE
T ss_pred -----------------EEEeCCCCceeEEecCcCCCCC-CcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeee
Confidence 1111112445566666655432 23556899999999998 89999999995 7999999998
Q ss_pred cCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhh
Q psy15403 400 PRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFN 462 (471)
Q Consensus 400 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~ 462 (471)
... ..+.|.|.+++++++ ++++++++.+.++|+.++++|+++++|+++|.+++.....+
T Consensus 303 ~~~-~~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~ 361 (434)
T 3gwb_A 303 FTP-MQARGPFMINLQTRA---EMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLS 361 (434)
T ss_dssp ECC-BSSCCEEEEEEEEEG---GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---C
T ss_pred ccc-CCCceeEEEEEecch---hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhh
Confidence 774 366799999999999 57888999999999999999999999999999998876553
No 9
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=4.7e-42 Score=361.70 Aligned_cols=340 Identities=13% Similarity=0.100 Sum_probs=284.0
Q ss_pred CceecCCCcEEEEEeccCCCC------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccc
Q psy15403 11 PSTWSPEAMQYKQGYLSDPKD------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSAD 84 (471)
Q Consensus 11 ~~~~~~nGl~~~v~~~~~~~~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d 84 (471)
..+-++||++|.+...+.+.. ++|+++|+++..|++||++||+|.||++++. .++.+.++..|+.++++++.+
T Consensus 7 ~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~-~~~~~~le~~G~~~na~t~~d 85 (475)
T 1hr6_A 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG-RAMAETLELLGGNYQCTSSRE 85 (475)
T ss_dssp EEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCH-HHHHHHHHHTTSCEEEEECSS
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCH-HHHHHHHHHcCCEEEEEEccC
Confidence 356799999997665443332 9999999999999999999999999999987 699999999999999999999
Q ss_pred eEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhh
Q psy15403 85 HTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKET 164 (471)
Q Consensus 85 ~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~ 164 (471)
++.|++++++++++.+|+++.+++.+|.|++++|+++++.+.++++...++|...+.+.+..++|++|||+++..|+.++
T Consensus 86 ~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 165 (475)
T 1hr6_A 86 NLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGL 165 (475)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGG
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred hcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccceec
Q psy15403 165 LETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVT 244 (471)
Q Consensus 165 I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (471)
|.+++ .++|++||++||+|+||+|+|+| +|+++++++++++|+.|+....+... ...++. .....+..
T Consensus 166 l~~it-------~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~~~~~-~~~~~~---~~~~~~~~ 233 (475)
T 1hr6_A 166 IPSIS-------KYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPITK-KVAQYT---GGESCIPP 233 (475)
T ss_dssp GGGCC-------HHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCCCCCC-CCCCCC---CEEEEECC
T ss_pred HhhcC-------HHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCCCCCCCCC-CCCCCc---CCeEEEec
Confidence 99999 99999999999999999999999 99999999999999999865432111 011110 00000000
Q ss_pred cCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCC
Q psy15403 245 PVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPE 324 (471)
Q Consensus 245 ~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (471)
.
T Consensus 234 ~------------------------------------------------------------------------------- 234 (475)
T 1hr6_A 234 A------------------------------------------------------------------------------- 234 (475)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCC-----------CCCcHHHHHH-HcCc
Q psy15403 325 WTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHE-----------GPGSLLSELR-RRGW 392 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~-----------~~~~L~~~lR-~~g~ 392 (471)
| ...+..+++.+.+.|+.+.. ...+..++.+++.+||++ +.++|+.+|| ++||
T Consensus 235 ----~----------~~~~~~~~~~v~~~~~~~~~-~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl 299 (475)
T 1hr6_A 235 ----P----------VFGNLPELFHIQIGFEGLPI-DHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYF 299 (475)
T ss_dssp ----C----------CCSSSCCCEEEEEEEECCCT-TCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSS
T ss_pred ----c----------ccCCCccceEEEEEEecCCC-CCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCC
Confidence 0 00012344667777775443 234667899999999975 4599999999 5899
Q ss_pred ccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHhcccchh
Q psy15403 393 CNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHD---QGPQEWIFLELFVQIIHEPCF 461 (471)
Q Consensus 393 ~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~---~~~~~~~~~~~k~~~i~~~~~ 461 (471)
+|++++.... +.+.|.|.+++.+++ +++.++++.+.++|+.+++ +++++++|+++|++++.....
T Consensus 300 ~y~v~s~~~~-~~~~g~~~i~~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~ 367 (475)
T 1hr6_A 300 VENCVAFNHS-YSDSGIFGISLSCIP---QAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLM 367 (475)
T ss_dssp EEEEEEEEEE-CSSCEEEEEEEEECG---GGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEeccc-cCCCceEEEEEEeCH---HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999988764 345699999999998 6788899999999999988 789999999999999877654
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=8e-42 Score=353.09 Aligned_cols=335 Identities=17% Similarity=0.184 Sum_probs=284.5
Q ss_pred ceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCC----CCCChhHHHHHHHHcCCeeeEE
Q psy15403 12 STWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTE----TYPAENEYNKFLSEHSGYSNAY 80 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~----~~~~~~~L~~~L~~~g~~l~~~ 80 (471)
..-++||++|.++..+.... ++|+..|+++..|++|+++||++.||+ +++. .++.+.++.+|+.++++
T Consensus 6 ~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~-~~~~~~l~~~G~~~~a~ 84 (424)
T 3amj_B 6 HWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDE-NAIADRLADIGARLGGG 84 (424)
T ss_dssp EEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEH-HHHHHHHHHTTCEEEEE
T ss_pred EEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCH-HHHHHHHHHhCCEEEee
Confidence 45689999996665543333 999999999999999999999999999 9987 68999999999999999
Q ss_pred eccceEEEEEEeChhhH--HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCC
Q psy15403 81 TSADHTNYHFEVSPDHL--EKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFG 158 (471)
Q Consensus 81 t~~d~t~~~~s~~~~~l--~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~ 158 (471)
++.+.+.|+++++++++ +.+|+++.+++.+|.|++++|+++++.+.++++...++|...+.+.+...+|++|||+++.
T Consensus 85 t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~ 164 (424)
T 3amj_B 85 AEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS 164 (424)
T ss_dssp ECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC
T ss_pred cCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 99999999999999998 9999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCccccc
Q psy15403 159 TGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLK 238 (471)
Q Consensus 159 ~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~ 238 (471)
+.++|.+++ .++|++||+++|+|+||+|+|+||+|.++++++++++|+.|+....+.+. ...+. .
T Consensus 165 --~~~~l~~it-------~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~---~-- 229 (424)
T 3amj_B 165 --SVATLQKIS-------RDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPL-PDPAM---P-- 229 (424)
T ss_dssp --CHHHHHHCC-------HHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCC-CCCCC---C--
T ss_pred --CHHHHHhCC-------HHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCC-CCCCC---C--
Confidence 899999999 99999999999999999999999999999999999999999855432210 00000 0
Q ss_pred ccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccC
Q psy15403 239 TRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNK 318 (471)
Q Consensus 239 ~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
T Consensus 230 -------------------------------------------------------------------------------- 229 (424)
T 3amj_B 230 -------------------------------------------------------------------------------- 229 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCC-CCCcHHHHHH-HcCcccce
Q psy15403 319 NVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHE-GPGSLLSELR-RRGWCNSL 396 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~-~~~~L~~~lR-~~g~~ys~ 396 (471)
.+..+.+.....++.+.+.|+.+.. +..+..++.+++.+||++ .+++|++.|| ++||+|++
T Consensus 230 ----------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v 292 (424)
T 3amj_B 230 ----------------RATVERIANPATQAHIAIGMPTLKR-GDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGA 292 (424)
T ss_dssp ----------------CCEEEEEECSSSEEEEEEEEEEEBT-TCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEE
T ss_pred ----------------CCceEEeeCCCCccEEEeeccCCCC-CCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEe
Confidence 0111112222345666777776533 334566899999999987 8899999999 59999999
Q ss_pred eeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhhh
Q psy15403 397 VGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNI 463 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~~ 463 (471)
+++... ..+.|.|.+++.+++ ++++++++.+.++|+.++++|+++++|+++|++++.....+.
T Consensus 293 ~~~~~~-~~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~ 355 (424)
T 3amj_B 293 YSYFSP-QKSMGLFQIGFETRA---EKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRL 355 (424)
T ss_dssp EEEECC-BSSCEEEEEEEEEES---TTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGG
T ss_pred eeeecc-CCCceeEEEEEEeCc---ccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhc
Confidence 988764 356799999999988 678889999999999999999999999999999988776543
No 11
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=7.7e-40 Score=339.45 Aligned_cols=331 Identities=11% Similarity=0.050 Sum_probs=280.6
Q ss_pred ceecCCCcEEEEEeccCCCC------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccce
Q psy15403 12 STWSPEAMQYKQGYLSDPKD------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADH 85 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~ 85 (471)
.+-++||++|.+.....+.. ++|++.|+++..|++|+++||++.|+++++. .++.+.++..|+.++++++.++
T Consensus 26 ~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~-~~~~~~l~~~G~~~na~t~~~~ 104 (439)
T 1pp9_B 26 FTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASS-FKITRGIEAVGGKLSVTSTREN 104 (439)
T ss_dssp EEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCH-HHHHHHHHHTTCEEEEEECSSC
T ss_pred EEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCH-HHHHHHHHHhCCeEEEEecceE
Confidence 45689999997666522222 9999999999999999999999999999987 6999999999999999999999
Q ss_pred EEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhh
Q psy15403 86 TNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETL 165 (471)
Q Consensus 86 t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I 165 (471)
+.|++++++++++.+|+++.+++.+|.|++++|+++++.+.++++...++|...+.+.+...+|+ |||+++..|+.++|
T Consensus 105 t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l 183 (439)
T 1pp9_B 105 MAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRI 183 (439)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGT
T ss_pred EEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccceecc
Q psy15403 166 ETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTP 245 (471)
Q Consensus 166 ~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (471)
.+++ .++|++||+++|+|+||+++|+|+ |++++.++++++|+ |+.....+. ...++.
T Consensus 184 ~~it-------~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~------------ 240 (439)
T 1pp9_B 184 GKVT-------PVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGLGLSG--AKAKYH------------ 240 (439)
T ss_dssp TTCC-------HHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC-CCC--CCCCBC------------
T ss_pred hhcC-------HHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCCCCCC--CCCCCc------------
Confidence 9999 999999999999999999999999 99999999999998 875432210 000000
Q ss_pred CccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCCC
Q psy15403 246 VKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEW 325 (471)
Q Consensus 246 ~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (471)
T Consensus 241 -------------------------------------------------------------------------------- 240 (439)
T 1pp9_B 241 -------------------------------------------------------------------------------- 240 (439)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCC--------CCCcHHHHHH-HcCcccce
Q psy15403 326 TTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHE--------GPGSLLSELR-RRGWCNSL 396 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~--------~~~~L~~~lR-~~g~~ys~ 396 (471)
+....+....+++.+.+.|+.+... ..+..++.+++.+||++ .+++|+++|| ++||+|++
T Consensus 241 ----------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~ 309 (439)
T 1pp9_B 241 ----------GGEIREQNGDSLVHAALVAESAAIG-SAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDV 309 (439)
T ss_dssp ----------CEEEEEECCCSEEEEEEEEECCCTT-SHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEE
T ss_pred ----------CCeEEecCCccceEEEEEecCCCCC-chHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEE
Confidence 0001111123456677777766543 34666899999999976 4799999999 69999999
Q ss_pred eeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhh
Q psy15403 397 VGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFN 462 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~ 462 (471)
+++... ..+.|.|.+++.++| ++++++++.+.++|+.++++|+++++|+++|++++.....+
T Consensus 310 ~~~~~~-~~~~g~~~i~~~~~~---~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~ 371 (439)
T 1pp9_B 310 SAFNAS-YSDSGLFGFYTISQA---ASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMS 371 (439)
T ss_dssp EEEEEE-ETTEEEEEEEEEEEG---GGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeecc-ccccceEEEEEEeCH---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 987653 356799999999988 68888999999999999999999999999999998775543
No 12
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.5e-40 Score=379.88 Aligned_cols=339 Identities=15% Similarity=0.213 Sum_probs=280.8
Q ss_pred eecCCCcEEEEEeccCCCC--CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHH-cCCeeeEEeccceEEEE
Q psy15403 13 TWSPEAMQYKQGYLSDPKD--LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSE-HSGYSNAYTSADHTNYH 89 (471)
Q Consensus 13 ~~~~nGl~~~v~~~~~~~~--~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~-~g~~l~~~t~~d~t~~~ 89 (471)
..++||++|.++..++... .+|++.|+.+..|+||+++||+|.||++++..+.+.+++.+ .|+.+|++|+.|+|+|.
T Consensus 41 ~~l~nGl~v~~~~~~~~~~~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~ 120 (995)
T 2fge_A 41 KHKKTGCEVMSVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYP 120 (995)
T ss_dssp EETTTCCEEEEEECSCSSEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEE
T ss_pred EECCCCCEEEEEEcCCCccEEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEE
Confidence 5789999996666555444 99999999999999999999999999999986557777765 58899999999999999
Q ss_pred EEeC-hhhHHHHHHHHHHhhhCCCC--ChHHHHHH---------------HHHHHHHHHhcCCChHHHHHHHHHHHcCCC
Q psy15403 90 FEVS-PDHLEKTLDIFSKFFICPLF--DASSTDRE---------------VNAVNSEHEKNIPNDAWRLDQLEKATCDPK 151 (471)
Q Consensus 90 ~s~~-~~~l~~~L~ll~~~l~~P~f--~ee~~~~~---------------k~~~~~el~~~~~~p~~~~~~~l~~~~~~~ 151 (471)
+.+. .++++.+|+++++++.+|.| ++++|+++ ++.+.+|++...++|...+.+.+...+|++
T Consensus 121 ~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~ 200 (995)
T 2fge_A 121 VASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPE 200 (995)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTT
T ss_pred EecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCC
Confidence 9885 67999999999999999999 99999999 899999999999999999999999999999
Q ss_pred CCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCC--CCCCCCCCCCC
Q psy15403 152 HDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVK--NKNVSTPEWTT 229 (471)
Q Consensus 152 ~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp--~~~~~~~~~~~ 229 (471)
|||+++..|++++|..++ .++|++||++||+|+||+|+|+||+|+++++++|+++|+.|+ ....+......
T Consensus 201 ~py~~~~~G~~~~i~~~t-------~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~ 273 (995)
T 2fge_A 201 NTYGVDSGGDPKDIPNLT-------FEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKFQ 273 (995)
T ss_dssp SGGGSCTTCCTTTGGGCC-------HHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCCCC
T ss_pred CCCCCCCCCChHhhhhcC-------HHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccCCC
Confidence 999999999999999999 999999999999999999999999999999999999999998 33211111111
Q ss_pred CCCCcccccccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCc
Q psy15403 230 HPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPD 309 (471)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (471)
+++..+..
T Consensus 274 ~~~~~~~~------------------------------------------------------------------------ 281 (995)
T 2fge_A 274 KLFSEPVR------------------------------------------------------------------------ 281 (995)
T ss_dssp CCCSSCEE------------------------------------------------------------------------
T ss_pred CCCCCCce------------------------------------------------------------------------
Confidence 12210000
Q ss_pred hhhhhhccCCcCCCCCCCCCCCcccccceEEE---eecCCcceEEEEeecCCCc-chhccCchhHHHHhhcCCCCCcHHH
Q psy15403 310 LQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYV---TPVKDVRSLLVTFPIPDLQ-EQHKSGPDNYLSHLIGHEGPGSLLS 385 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~Lg~~~~~~L~~ 385 (471)
....+.+ .+..+++.+.+.|+.|... +..+..++.+|+.+||++.+|+|++
T Consensus 282 -------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~ 336 (995)
T 2fge_A 282 -------------------------LVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRK 336 (995)
T ss_dssp -------------------------EEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHH
T ss_pred -------------------------EEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 0000001 1223567788888887765 4567789999999999999999999
Q ss_pred HHHHcCcccceeee-cCCCCCCeeEEEEEE-EcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccc
Q psy15403 386 ELRRRGWCNSLVGG-PRSGAKGFAFFTVTV-DLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEP 459 (471)
Q Consensus 386 ~lR~~g~~ys~~~~-~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~ 459 (471)
.||++||+|+++++ +.. ....+.|.|.+ .+.+ ++++++++.++++|++|+++|+++++++++|+++....
T Consensus 337 ~l~e~gl~~~~~~~~~~~-~~~~~~f~i~~~~~~~---~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~ 408 (995)
T 2fge_A 337 ILLESGLGEALVSSGLSD-ELLQPQFGIGLKGVSE---ENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSL 408 (995)
T ss_dssp HHHHTTSCSEECSCEEEC-SSSSCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcceeeccccc-cccCeEEEEEEEeCCH---HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99988999999865 443 23467888865 4566 78899999999999999999999999999999886443
No 13
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=7.9e-40 Score=375.74 Aligned_cols=366 Identities=13% Similarity=0.112 Sum_probs=284.7
Q ss_pred ceecCCCcEEEEEeccCCCC-----CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHH--cCCeeeEEeccc
Q psy15403 12 STWSPEAMQYKQGYLSDPKD-----LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSE--HSGYSNAYTSAD 84 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~-----~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~--~g~~l~~~t~~d 84 (471)
..+++||++|.++..+++.. .+|++.+|.+..|+||+++||+|+||++++.. ++...+.. +|+.+|++|+.|
T Consensus 89 ~~~l~nGl~vl~i~~~~~~~~~~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~-e~~~~l~~~slG~~lNA~T~~D 167 (1193)
T 3s5m_A 89 YQHKKAKTQVISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYK-NSIGLLEKGTLHTHLNAYTFND 167 (1193)
T ss_dssp EEETTTCCEEEEEEECCTTCCCEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCT-THHHHHHHSCCEEEEEEEECSS
T ss_pred EEECCCCCEEEEEECCCCCeEEEEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChh-hHHHHHHHhccCceEEeEEcCC
Confidence 34679999998888777631 89999999999999999999999999999984 77777777 789999999999
Q ss_pred eEEEEEEeCh-hhHHHHHHHHHHhhhCCCCChHH--HHHH-----------------------------HHHHHHHHHhc
Q psy15403 85 HTNYHFEVSP-DHLEKTLDIFSKFFICPLFDASS--TDRE-----------------------------VNAVNSEHEKN 132 (471)
Q Consensus 85 ~t~~~~s~~~-~~l~~~L~ll~~~l~~P~f~ee~--~~~~-----------------------------k~~~~~el~~~ 132 (471)
+|+|.+++++ ++++.+|+++++++.+|.|++++ |.++ ++.+.+|++..
T Consensus 168 ~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~ 247 (1193)
T 3s5m_A 168 RTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGA 247 (1193)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHH
T ss_pred eEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHh
Confidence 9999999886 99999999999999999999888 8776 57899999999
Q ss_pred CCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHH
Q psy15403 133 IPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVD 212 (471)
Q Consensus 133 ~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k 212 (471)
.++|..++.+.+.+.+|++|||+++..|++++|..++ .++|++||++||+|+|++|+|+||+|++++.++|++
T Consensus 248 ~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt-------~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~ 320 (1193)
T 3s5m_A 248 LSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLT-------YEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQ 320 (1193)
T ss_dssp TTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCC-------HHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCC-------HHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCccccccccee-----ccCccccceeeeecCCch-hhhhhccCCCCCCCCcCCCCCCccc
Q psy15403 213 KFKDVKNKNVSTPEWTTHPYGKDQLKTRGYV-----TPVKDVRSLLVTFPIPDL-QEQHKKNKNVTTPEWTTHPYGKDQL 286 (471)
Q Consensus 213 ~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~q~~v~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (471)
+|+.|+.++.........+..++....+.+. .....|+.+.++|.+|+. +..... -+-++
T Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~-~~~~~------------- 386 (1193)
T 3s5m_A 321 YLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNH-NNNHS------------- 386 (1193)
T ss_dssp HHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC------------------------
T ss_pred HhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccc-ccccc-------------
Confidence 9999986543211000001101111222222 134678999999999864 100000 00011
Q ss_pred cccCccccccccccccccCCCCchhhhhhccCCcCCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCc------
Q psy15403 287 KTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQ------ 360 (471)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 360 (471)
.++..+-+.|.++...
T Consensus 387 ----------------------------------------------------------~~~~~~~~~y~~~~~~~~~~~~ 408 (1193)
T 3s5m_A 387 ----------------------------------------------------------NNQSSENNGYSNGSHSSDLSLE 408 (1193)
T ss_dssp ----------------------------------------------------------------------CCCCSTTCCC
T ss_pred ----------------------------------------------------------cccccccccccccccccccccc
Confidence 1223344444443322
Q ss_pred chhccCchhHHHHhhcCCCCCcHHHHHHHcCccccee-eecCCCCCCeeEEEEEEE-cCcch-----hhcH-HHHHHHHH
Q psy15403 361 EQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLV-GGPRSGAKGFAFFTVTVD-LTLDG-----INHA-DDIVELLF 432 (471)
Q Consensus 361 ~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~-~~~~~~~~~~~~~~v~~~-~~~~~-----~~~~-~~~~~~~~ 432 (471)
+..+..++.+|+++|||+.+|+|++.||++||+|+++ +++... ...+.|.|.+. +.+++ .+.+ +++.+.|.
T Consensus 409 ~~~d~~al~vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~-~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~ 487 (1193)
T 3s5m_A 409 NPTDYFVLLIINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDS-LVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIM 487 (1193)
T ss_dssp SHHHHHHHHHHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECS-SSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHCCCCCCHHHHHHHhcCCeeeecccccccc-cCCcEEEEEEecCChhhccccchhhHHHHHHHHHH
Confidence 1356779999999999999999999999999999998 555533 44578888874 45432 2356 68999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhccc
Q psy15403 433 QYIKLIHDQGPQEWIFLELFVQIIHE 458 (471)
Q Consensus 433 ~~l~~i~~~~~~~~~~~~~k~~~i~~ 458 (471)
++|++|+++|+++++++++|.++...
T Consensus 488 ~~L~~l~~~gi~~~ele~a~~~le~~ 513 (1193)
T 3s5m_A 488 NALKKVVKEGFNKSAVEASINNIEFI 513 (1193)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988544
No 14
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=2.4e-39 Score=333.72 Aligned_cols=333 Identities=11% Similarity=0.081 Sum_probs=278.4
Q ss_pred eecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHc-CCeeeEEeccc
Q psy15403 13 TWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEH-SGYSNAYTSAD 84 (471)
Q Consensus 13 ~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~-g~~l~~~t~~d 84 (471)
.-++||++|.++..++... ++|+..|+ .|++|+++||++.|+.+++...++.+.++.. |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 5688999987666543222 78887654 7999999999999999996657899999998 99999999998
Q ss_pred e----EEEEEEeChh-------hHHHHHHHHHHhhhCCC-----CChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHc
Q psy15403 85 H----TNYHFEVSPD-------HLEKTLDIFSKFFICPL-----FDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATC 148 (471)
Q Consensus 85 ~----t~~~~s~~~~-------~l~~~L~ll~~~l~~P~-----f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~ 148 (471)
+ +.|+++++++ +++.+|+++.+++.+|. |++++|+++++.+.++++...++|...+.+.+...+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 8 5889999886 69999999999999999 999999999999999999988899999999999999
Q ss_pred C-CCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCC
Q psy15403 149 D-PKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEW 227 (471)
Q Consensus 149 ~-~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~ 227 (471)
| ++|||+++..|+.++|.+++ .++|++||+++|+|+|++|+|+||+|.+++.+++ ++|+ |+........
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t-------~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~- 232 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEET-------AASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAA- 232 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCC-------HHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCC-
T ss_pred ccCCCCccCCCCCCHHHHHhCC-------HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCcccccccc-
Confidence 9 89999999999999999999 9999999999999999999999999999999999 9999 8854321110
Q ss_pred CCCCCCcccccccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCC
Q psy15403 228 TTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPI 307 (471)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (471)
.+... |
T Consensus 233 --~~~~~------------------------~------------------------------------------------ 238 (425)
T 3d3y_A 233 --IFYNQ------------------------P------------------------------------------------ 238 (425)
T ss_dssp --SCCCC------------------------C------------------------------------------------
T ss_pred --ccccc------------------------c------------------------------------------------
Confidence 01100 0
Q ss_pred CchhhhhhccCCcCCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHH
Q psy15403 308 PDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSEL 387 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~l 387 (471)
...........+...++.+.+.|+.+...+..+..++.+++.+|||+.+++|+++|
T Consensus 239 ------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~l 294 (425)
T 3d3y_A 239 ------------------------IRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNV 294 (425)
T ss_dssp ------------------------CCSSCEEEEEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHT
T ss_pred ------------------------CCCcceeEEecCCccccEEEEEeecCCCCCCchHHHHHHHHHHhCCChhhHHHHHH
Confidence 00001122233455677888888876544455677899999999999999999999
Q ss_pred HH-cCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhh
Q psy15403 388 RR-RGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFN 462 (471)
Q Consensus 388 R~-~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~ 462 (471)
|+ +||+|++++..... .|.|.|++.+++ ++++++++.+.++|+.++++|+++++|+++|.+++.....+
T Consensus 295 Re~~glaY~v~~~~~~~---~g~~~i~~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~ 364 (425)
T 3d3y_A 295 REKEHLAYYASSSIDTF---RGFMTVQTGIDG---KNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILA 364 (425)
T ss_dssp TTTSCCCSEEEEEEETT---TTEEEEEEEECG---GGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCeEEEEecccccc---CceEEEEEecCH---hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhc
Confidence 95 89999999876532 578999999988 68888999999999999999999999999999998876554
No 15
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=3.1e-39 Score=333.74 Aligned_cols=327 Identities=11% Similarity=0.066 Sum_probs=272.0
Q ss_pred ceecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccc
Q psy15403 12 STWSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSAD 84 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d 84 (471)
.+-++||++|.++..+.... ++|++.|+++..|++|+++||++.|+.+ ..++..|++++++++.+
T Consensus 3 ~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 3 VTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--------HHHHHTTCEEEEEECSS
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--------ccHHHcCCeeeeeecCC
Confidence 34588999997776655433 9999999999999999999999998632 24678999999999999
Q ss_pred eEEEEEEeChhhHHHHHHHHHHhhhCCC---CChHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHcCCCCCCCCCCCC
Q psy15403 85 HTNYHFEVSPDHLEKTLDIFSKFFICPL---FDASSTDREVNAVNSEHEKNIPND-AWRLDQLEKATCDPKHDYNRFGTG 160 (471)
Q Consensus 85 ~t~~~~s~~~~~l~~~L~ll~~~l~~P~---f~ee~~~~~k~~~~~el~~~~~~p-~~~~~~~l~~~~~~~~p~~~~~~G 160 (471)
++.|++++++++++.+|+++.+++.+|. |++++|+++++.+.++++...++| ...+.+.+...+|++||++++..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999888899 888889999999999999999999
Q ss_pred ChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCccccccc
Q psy15403 161 NKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTR 240 (471)
Q Consensus 161 t~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~ 240 (471)
+.++|.+++ .++|++||+++|+|+||+|+|+||+|+++++++++++|++|+....+.. ..++. ..
T Consensus 155 ~~~~l~~~t-------~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~--- 219 (431)
T 3cx5_A 155 TLESLENLV-------VADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVL--KKKAA---FL--- 219 (431)
T ss_dssp CHHHHHTCC-------HHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCC--CCCCC---CC---
T ss_pred CHHHHhhCC-------HHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCC--CCCCc---cc---
Confidence 999999999 9999999999999999999999999999999999998988885442211 00000 00
Q ss_pred ceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCc
Q psy15403 241 GYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNV 320 (471)
Q Consensus 241 ~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
T Consensus 220 -------------------------------------------------------------------------------- 219 (431)
T 3cx5_A 220 -------------------------------------------------------------------------------- 219 (431)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccccceEEE-eecCCcceEEEEeecCCCcchhccCchhHHHHhhcCC---------CCCcHHHHHHHc
Q psy15403 321 TTPEWTTHPYGKDQLKTRGYV-TPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHE---------GPGSLLSELRRR 390 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~---------~~~~L~~~lR~~ 390 (471)
+..+.+ .+..+++.+.+.|+.+... ..+..++.+++.+||++ .+++|++.||++
T Consensus 220 ---------------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~ 283 (431)
T 3cx5_A 220 ---------------GSEVRLRDDTLPKAWISLAVEGEPVN-SPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEY 283 (431)
T ss_dssp ---------------CEEEEEECTTSSSEEEEEEEECCCTT-CTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTT
T ss_pred ---------------CceEEEcCCCCCceEEEEEeecCCCC-CccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhc
Confidence 000111 1123456677777765532 34566899999999963 679999999988
Q ss_pred CcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchh
Q psy15403 391 GWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCF 461 (471)
Q Consensus 391 g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~ 461 (471)
|++|++++.... ..+.|.|.+++.+++. ++++++++.+.++|+.+++ |+++++|+++|++++.....
T Consensus 284 gl~y~v~~~~~~-~~~~g~~~i~~~~~~~--~~~~~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~~~~~ 350 (431)
T 3cx5_A 284 QLCDNFNHFSLS-YKDSGLWGFSTATRNV--TMIDDLIHFTLKQWNRLTI-SVTDTEVERAKSLLKLQLGQ 350 (431)
T ss_dssp TCCSEEEEEEEE-CSSCEEEEEEEEESCT--TCHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred CceeeEeEeecc-cCCCceEEEEEeeCch--hhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh
Confidence 999999988763 4567999999999882 4777899999999999999 99999999999999876554
No 16
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=6.5e-38 Score=332.40 Aligned_cols=334 Identities=12% Similarity=0.099 Sum_probs=259.2
Q ss_pred ceecCCCcEEEEEeccCCC---C------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHH----HcCCeee
Q psy15403 12 STWSPEAMQYKQGYLSDPK---D------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLS----EHSGYSN 78 (471)
Q Consensus 12 ~~~~~nGl~~~v~~~~~~~---~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~----~~g~~l~ 78 (471)
.+-++||++|.++..++.. . ++|+++|++++.|++||++||+|+||++++. .++.+.++ ..|+.+|
T Consensus 28 ~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~-~~~~~~~~~~~~~~G~~~n 106 (492)
T 3go9_A 28 QGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTP-AQLQSLWQQGIDNERPLPP 106 (492)
T ss_dssp EEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCH-HHHHHHHHTCSCSSSCCCS
T ss_pred EEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHhcCCCcc
Confidence 5678999999776654422 2 9999999999999999999999999999998 58988766 4789999
Q ss_pred EEeccceEEEEEEeCh---hhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCC
Q psy15403 79 AYTSADHTNYHFEVSP---DHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYN 155 (471)
Q Consensus 79 ~~t~~d~t~~~~s~~~---~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~ 155 (471)
++++.+++.|++++++ ++++.+|+++.+++.+|.|++++|++++..+.++++...+++..... ...+++.++++
T Consensus 107 a~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 183 (492)
T 3go9_A 107 AITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSSLIG 183 (492)
T ss_dssp EEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTSTTTT
T ss_pred eEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCCccc
Confidence 9999999999999998 78999999999999999999999999999887788777777654332 34567777777
Q ss_pred CCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCC-CCCCCCCc
Q psy15403 156 RFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPE-WTTHPYGK 234 (471)
Q Consensus 156 ~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~-~~~~~~~~ 234 (471)
++..+ +.|.+++ .++|++||++||+|+||+|+|+||+|+++++++++++|+.|+.+...+.. ....+.
T Consensus 184 ~~~~~--~~i~~it-------~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~-- 252 (492)
T 3go9_A 184 HDPGQ--PVTQPVD-------VEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPL-- 252 (492)
T ss_dssp CCTTC--CCCSSCC-------HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCC--
T ss_pred CCCch--hhhhcCC-------HHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC--
Confidence 76544 5789999 99999999999999999999999999999999999999999976432211 111111
Q ss_pred ccccccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhh
Q psy15403 235 DQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQH 314 (471)
Q Consensus 235 ~~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
......++..+..|+.+.++|+.|...+++
T Consensus 253 -~~~~~~~~~~~~~q~~v~l~~~~~~~~~~d------------------------------------------------- 282 (492)
T 3go9_A 253 -PPEPVSLMNEQAAQDTLSLMWDTPWHPIQD------------------------------------------------- 282 (492)
T ss_dssp -CSSCEEEEESSCSSEEEEEEEEEECCCCCS-------------------------------------------------
T ss_pred -CCCceEEEcCCCCCcEEEEEecCCCCCccc-------------------------------------------------
Confidence 111222333445555566655554321110
Q ss_pred hccCCcCCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHH---cC
Q psy15403 315 KKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRR---RG 391 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~---~g 391 (471)
.....++..+.+++.+|| ++|+..||+ +|
T Consensus 283 --------------------------------------------~~~l~~~~~~~v~~~iLg----~~L~~~lre~~~~g 314 (492)
T 3go9_A 283 --------------------------------------------SMALSRYWRSDLAREALF----WHIKQVLEKNNQKN 314 (492)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHH----HHHHHHHHHSCCTT
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccc
Confidence 000012234589999999 799999995 89
Q ss_pred cccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhhhh
Q psy15403 392 WCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNIL 464 (471)
Q Consensus 392 ~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~~~ 464 (471)
++|+++++... .+..+.|.+ ++.+ ++.+++++.+.++|+++++.|+++++|+++|+++++.......
T Consensus 315 l~y~~~s~~~~-~~~~~~~~i--~~~~---~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~ 381 (492)
T 3go9_A 315 LKLGFDCRVQY-QRAQCAIHL--NTPV---ENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFA 381 (492)
T ss_dssp CEEEEEEEEET-TEEEEEEEE--EECG---GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHH
T ss_pred cccccCchhhh-hhcceEEEE--EcCc---ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999988764 344555554 4455 7889999999999999999999999999999999988766543
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=3.3e-33 Score=282.00 Aligned_cols=289 Identities=9% Similarity=0.021 Sum_probs=230.8
Q ss_pred CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccceEEEEEEeChhhHHHHHHHHHHhhhCC
Q psy15403 32 LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDIFSKFFICP 111 (471)
Q Consensus 32 ~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d~t~~~~s~~~~~l~~~L~ll~~~l~~P 111 (471)
++|+++| +..|++|+++||+++||++++. .++.+.++.+|+.++++++.+++.|++++++++++.+|+++.+++.+|
T Consensus 20 ~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~-~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p 96 (352)
T 3cx5_B 20 HGGSRYA--TKDGVAHLLNRFNFQNTNTRSA-LKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKT 96 (352)
T ss_dssp SCSGGGC--SSTTHHHHHHHHTTSCBSSSCH-HHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHB
T ss_pred eeeccCC--CcccHHHHHHHHhccCcCCCCH-HHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHHHHHHHHhCC
Confidence 8899986 4899999999999999999987 699999999999999999999999999999999999999999999999
Q ss_pred CCChHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhccc
Q psy15403 112 LFDASSTD-REVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSS 190 (471)
Q Consensus 112 ~f~ee~~~-~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p 190 (471)
.|++++|+ ++++.+.++++...++|...+.+.+.+.+|+ |||+++.. .++|.+++ .++|++||+++|+|
T Consensus 97 ~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it-------~~~l~~f~~~~y~~ 166 (352)
T 3cx5_B 97 AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVS-------LQDIKDFADKVYTK 166 (352)
T ss_dssp CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCC-------HHHHHHHHHHHCCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhccCC-------HHHHHHHHHHhCCc
Confidence 99999998 9999999999998999999999999999897 99998874 68999999 99999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHH-HHhhccCCCCCCCCCCCCCCCCCcccccccceeccCccccceeeeecCCchhhhhhccC
Q psy15403 191 NIMGLAILGKESLDELEKYA-VDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNK 269 (471)
Q Consensus 191 ~n~tLvVvGd~d~~~l~~lv-~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~ 269 (471)
+||+|+|+| +|++++.+++ +++|+.|+....+.......+..
T Consensus 167 ~n~~l~v~G-~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~------------------------------------ 209 (352)
T 3cx5_B 167 ENLEVSGEN-VVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFL------------------------------------ 209 (352)
T ss_dssp GGEEEEEES-SCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCC------------------------------------
T ss_pred CcEEEEEeC-CCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc------------------------------------
Confidence 999999999 9999999999 89999998554221110000000
Q ss_pred CCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcCCCCCCCCCCCcccccceEEEeecCCcce
Q psy15403 270 NVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRS 349 (471)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (471)
+....+ +...+..
T Consensus 210 ------------------------------------------------------------------~~~~~~-~~~~~~~ 222 (352)
T 3cx5_B 210 ------------------------------------------------------------------GEENRV-RFIGDSV 222 (352)
T ss_dssp ------------------------------------------------------------------SCEEEE-ECSSSEE
T ss_pred ------------------------------------------------------------------CCeEEE-ecCCCce
Confidence 000001 1112333
Q ss_pred EEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHH-HcCcccceeeecCCCCCCeeEEEEEEEcC-cchhhcHHHH
Q psy15403 350 LLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELR-RRGWCNSLVGGPRSGAKGFAFFTVTVDLT-LDGINHADDI 427 (471)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR-~~g~~ys~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~ 427 (471)
+.+.++.. ..+..++.+++.+||+ .|| ++|++ ++++... ..+.|.|.+++.+. + ++ +
T Consensus 223 ~~~~~~~~----~~~~~~l~vl~~iLg~--------~lre~~gl~--~~~~~~~-~~~~g~~~i~~~~~~~---~~---~ 281 (352)
T 3cx5_B 223 AAIGIPVN----KASLAQYEVLANYLTS--------ALSELSGLI--SSAKLDK-FTDGGLFTLFVRDQDS---AV---V 281 (352)
T ss_dssp EEEEEEEC----TTTHHHHHHHHHHHHS--------TTSTTGGGC--SEEEEEE-ETTEEEEEEEEEESCH---HH---H
T ss_pred EEEecCCC----ChhHHHHHHHHHHhCc--------chhcccCce--EEEeecC-cCcceeEEEEEEeCCH---HH---H
Confidence 44443332 2356689999999994 678 58988 5555443 34678999999876 3 34 4
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhh
Q psy15403 428 VELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFN 462 (471)
Q Consensus 428 ~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~ 462 (471)
.+.+.+++ ++++++++|+++|++++.....+
T Consensus 282 ~~~i~~~l----~~~~t~~el~~ak~~~~~~~~~~ 312 (352)
T 3cx5_B 282 SSNIKKIV----ADLKKGKDLSPAINYTKLKNAVQ 312 (352)
T ss_dssp HHHHHHHH----HHHHSCEECGGGHHHHHHHHHHH
T ss_pred HHHHHHHH----HhcCCHHHHHHHHHHHHHHHHhh
Confidence 44554444 34699999999999998876654
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.91 E-value=1.9e-24 Score=245.24 Aligned_cols=323 Identities=10% Similarity=0.001 Sum_probs=239.3
Q ss_pred eecCCCcEEEEEeccC----CCC------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEec
Q psy15403 13 TWSPEAMQYKQGYLSD----PKD------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTS 82 (471)
Q Consensus 13 ~~~~nGl~~~v~~~~~----~~~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~ 82 (471)
..+.||+++.++.... |.. .+|...++....|+++++..++..|+..+ .+...+ .|..++++.
T Consensus 503 ~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~----~~~~~l--~G~~~~~~~- 575 (939)
T 1q2l_A 503 IVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL----SNQASV--GGISFSTNA- 575 (939)
T ss_dssp EEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH----HHHHHH--TTEEEEEEE-
T ss_pred EEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH----hhHHHH--cCcEEEEee-
Confidence 4467999987666542 133 66666666667799999999999876433 333334 466667777
Q ss_pred cceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy15403 83 ADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKN-IPNDAWRLDQLEKATCDPKHDYNRFGTGN 161 (471)
Q Consensus 83 ~d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~-~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt 161 (471)
.+...+.+++.+++++.+|+++.+++++|.|+++.|+++|+.+..++++. .++|...+...+..+++++ + .+..|+
T Consensus 576 ~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~--~-~~~~~~ 652 (939)
T 1q2l_A 576 NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP--Y-FSRDER 652 (939)
T ss_dssp SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS--C-CCHHHH
T ss_pred CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC--C-CCHHHH
Confidence 88899999999999999999999999999999999999999999999987 4578888888898888875 2 344478
Q ss_pred hhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccccccc
Q psy15403 162 KETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRG 241 (471)
Q Consensus 162 ~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~lv~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~~ 241 (471)
.++|.+++ .++|++||+++|.+.+++++|+||++.+++.++++++|+.|+........... +.
T Consensus 653 ~~~l~~it-------~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~--------- 715 (939)
T 1q2l_A 653 RKILPSIT-------LKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKD-VV--------- 715 (939)
T ss_dssp HHHGGGCC-------HHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEE-EC---------
T ss_pred HHHHhcCC-------HHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccce-EE---------
Confidence 99999999 99999999999999999999999999999999999999988743211100000 00
Q ss_pred eeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCcC
Q psy15403 242 YVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVT 321 (471)
Q Consensus 242 ~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
+
T Consensus 716 -----------------~-------------------------------------------------------------- 716 (939)
T 1q2l_A 716 -----------------V-------------------------------------------------------------- 716 (939)
T ss_dssp -----------------C--------------------------------------------------------------
T ss_pred -----------------e--------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCcccccc-eEEEeecCCcceE-EEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHH-HcCcccceee
Q psy15403 322 TPEWTTHPYGKDQLKT-RGYVTPVKDVRSL-LVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELR-RRGWCNSLVG 398 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR-~~g~~ys~~~ 398 (471)
+. ... .+........+.+ .+.|+.+. .+ ....++..+||+..+++||..|| ++||+|+|++
T Consensus 717 ----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s 780 (939)
T 1q2l_A 717 ----------DK-KQSVIFEKAGNSTDSALAAVFVPTGY-DE----YTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFA 780 (939)
T ss_dssp ----------CS-CEEEEEEECCSSSCEEEEEEEECSSC-CH----HHHHHHHHHHHHHHHHHHTHHHHTSCCSSSCEEE
T ss_pred ----------CC-CceEEEecCCCCCCceeEEEEEecCC-CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Confidence 00 000 0111111122333 56665542 22 24555666777777799999999 6999999999
Q ss_pred ecCCCCCCeeE-EEEEE-EcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchh
Q psy15403 399 GPRSGAKGFAF-FTVTV-DLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCF 461 (471)
Q Consensus 399 ~~~~~~~~~~~-~~v~~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~ 461 (471)
+........|+ |.|.. ++++ +++++.++.+.+++..+. .|+++++|+++|+.++....-
T Consensus 781 ~~~~~~~~~g~~~~i~s~~~~p---~~~~~~i~~~~~~~~~~~-~~~t~~el~~~k~~l~~~~~~ 841 (939)
T 1q2l_A 781 FPMSVGRQWGMGFLLQSNDKQP---SFLWERYKAFFPTAEAKL-RAMKPDEFAQIQQAVITQMLQ 841 (939)
T ss_dssp EEEEETTEEEEEEEEEESSSCH---HHHHHHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTC
T ss_pred eEeecCCeeEEEEEEECCCCCH---HHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhcC
Confidence 87633344453 66666 5678 688889999999999987 579999999999998776543
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.90 E-value=6.4e-23 Score=234.28 Aligned_cols=328 Identities=11% Similarity=0.012 Sum_probs=233.2
Q ss_pred ecCCCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHhc-CCCCCCChhHHHHHHHHcCCeeeE-----E
Q psy15403 14 WSPEAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLFM-GTETYPAENEYNKFLSEHSGYSNA-----Y 80 (471)
Q Consensus 14 ~~~nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~~-Gt~~~~~~~~L~~~L~~~g~~l~~-----~ 80 (471)
+..||+++.+........ ++|+. +....|+++++.+++.. |+++++. .+|.+.++...+.+++ +
T Consensus 557 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~-~el~~~l~~~~ggl~~~~~~~~ 633 (995)
T 2fge_A 557 GDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTF-VQLNQLIGRKTGGISVYPLTSS 633 (995)
T ss_dssp EESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCH-HHHHHHHHHHSSEEEEEEEEEE
T ss_pred eecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhcCceEeeccccc
Confidence 568999987665533222 66766 45678899999888885 9999997 7999999966555555 6
Q ss_pred ecc-----ceEEEEEEeChhhHHHHHHHHHHhhhCCCCChH-HHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHcCCCCC
Q psy15403 81 TSA-----DHTNYHFEVSPDHLEKTLDIFSKFFICPLFDAS-STDREVNAVNSEHEKNIP-NDAWRLDQLEKATCDPKHD 153 (471)
Q Consensus 81 t~~-----d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee-~~~~~k~~~~~el~~~~~-~p~~~~~~~l~~~~~~~~p 153 (471)
++. +.+.+++++.+++++.+|+++.+++++|.|+++ .|+++++.+..++++... ++..++...+...+.++++
T Consensus 634 ~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~ 713 (995)
T 2fge_A 634 VRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGW 713 (995)
T ss_dssp ETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHH
T ss_pred cCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHH
Confidence 655 889999999999999999999999999999999 999999999999998864 6666677778777665565
Q ss_pred CCCCCCC--ChhhhcccCC---CCCcchHHHHHHHHHhhcccCCeEEEEEcCCCH-HHHHHHHHHhhccC-CCCCCCCCC
Q psy15403 154 YNRFGTG--NKETLETIPK---SKGIDVRNELLKFHNKWYSSNIMGLAILGKESL-DELEKYAVDKFKDV-KNKNVSTPE 226 (471)
Q Consensus 154 ~~~~~~G--t~e~I~~it~---~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~-~~l~~lv~k~fg~l-p~~~~~~~~ 226 (471)
++....| ....+..+.. ..-..+.++|++||+++|++++|+++|+||++. +++.++++++|+.| |....+..
T Consensus 714 ~~~~~~gl~~~~~~~~l~~~~~e~~~~i~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~- 792 (995)
T 2fge_A 714 MSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLV- 792 (995)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSC-
T ss_pred HHHHHccHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCCC-
Confidence 5432211 1111110000 000123789999999999999999999999995 99999999999999 75432111
Q ss_pred CCCCCCCcccccccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCC
Q psy15403 227 WTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFP 306 (471)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (471)
...+. . ..
T Consensus 793 --~~~~~--~-~~------------------------------------------------------------------- 800 (995)
T 2fge_A 793 --TWDGR--L-PL------------------------------------------------------------------- 800 (995)
T ss_dssp --CCCCC--C-CC-------------------------------------------------------------------
T ss_pred --ccccc--C-Cc-------------------------------------------------------------------
Confidence 00010 0 00
Q ss_pred CCchhhhhhccCCcCCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHH
Q psy15403 307 IPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSE 386 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~ 386 (471)
.......| .....+...++.. ..+..++.++.|++.+||+ ++|+..
T Consensus 801 -----------------------------~~~~~~~~-~~v~~~~~~~~~~-~~~~~d~~al~vl~~iLg~---~~L~~~ 846 (995)
T 2fge_A 801 -----------------------------RNEAIVIP-TQVNYVGKAGNIY-STGYELDGSAYVISKHISN---TWLWDR 846 (995)
T ss_dssp -----------------------------CCEEEECS-CSSBEEEEEEEGG-GGTCCCCTHHHHHHHHHHH---THHHHH
T ss_pred -----------------------------cceEEEec-CceEEEEEecCCC-CCCCcccHHHHHHHHHHCC---CccHHH
Confidence 00000001 1122223233221 2445577899999999996 578899
Q ss_pred HHHcCcccceeeecCCCCCCeeEEE-EEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccc
Q psy15403 387 LRRRGWCNSLVGGPRSGAKGFAFFT-VTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEP 459 (471)
Q Consensus 387 lR~~g~~ys~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~ 459 (471)
||++|++|+++++... .|.|. ++...+| ++++.++.+.+.++.|++.++++++|+++|..++...
T Consensus 847 iRe~g~aYg~~s~~~~----~G~~~~~~s~~dp----~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~ 912 (995)
T 2fge_A 847 VRVSGGAYGGFCDFDS----HSGVFSYLSYRDP----NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDV 912 (995)
T ss_dssp TTTTTCCSEEEEEEET----TTTEEEEEEESBS----CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred hhhcCCCcccceEeCC----CccEEEEEEEcCC----CHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999998764 25666 6666666 3455777778888888888999999999999988754
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.85 E-value=5.9e-21 Score=217.80 Aligned_cols=325 Identities=11% Similarity=0.027 Sum_probs=239.8
Q ss_pred ecCCCcEEEEEeccC---CCC------CCccCCCCCCCCCHHHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEeccc
Q psy15403 14 WSPEAMQYKQGYLSD---PKD------LPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSAD 84 (471)
Q Consensus 14 ~~~nGl~~~v~~~~~---~~~------~~Gs~~e~~~~~Gla~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~~d 84 (471)
.+.||+++....... |.. .+|...++....|+++++..++..+ ++ ..++...+ .|.+++++++.+
T Consensus 523 ~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~-~~~~~~~l--~G~~~~~~~~~~ 596 (990)
T 3cww_A 523 KDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LN-EYAYAAEL--AGLSYDLQNTIY 596 (990)
T ss_dssp EECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HH-HHHHHHHH--TTEEEEEEEETT
T ss_pred ecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HH-HhhhHHHh--CCeEEEEEEcCC
Confidence 456899886555432 122 4455556667778999999998874 22 34565555 488889999999
Q ss_pred eEEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHcCCCCCCCCCCCCChh
Q psy15403 85 HTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIP-NDAWRLDQLEKATCDPKHDYNRFGTGNKE 163 (471)
Q Consensus 85 ~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~~~~~k~~~~~el~~~~~-~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e 163 (471)
...+++++.+++++.+|+++.+++.+|.|+++.|+++++.+...+++... +|..++...+...+++ +++.. .++.+
T Consensus 597 ~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~~--~~~~~ 673 (990)
T 3cww_A 597 GMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTE-VAWTK--DELKE 673 (990)
T ss_dssp EEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBS-SCCCH--HHHHH
T ss_pred eEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCC-CCCCH--HHHHH
Confidence 99999999999999999999999999999999999999999999998877 8999999988888875 45442 35789
Q ss_pred hhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCCHHHHHHH---HHHhhccCCCCCCCCCCCCCCCCCccccccc
Q psy15403 164 TLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKY---AVDKFKDVKNKNVSTPEWTTHPYGKDQLKTR 240 (471)
Q Consensus 164 ~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d~~~l~~l---v~k~fg~lp~~~~~~~~~~~~~~~~~~~~~~ 240 (471)
.|.+++ .++|.+|+++++.+.+++++|+||++.+++.++ +.++|+.++.....+. ...+.. +
T Consensus 674 ~l~~lt-------~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~------~ 738 (990)
T 3cww_A 674 ALADVT-------LPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLP--SQLAAY------R 738 (990)
T ss_dssp HHTTCC-------HHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCG--GGCCCC------C
T ss_pred HHhcCC-------HHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCch--hhcccc------c
Confidence 999999 999999999999999999999999999999888 6788887763210000 000000 0
Q ss_pred ceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccccccccccccCCCCchhhhhhccCCc
Q psy15403 241 GYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNV 320 (471)
Q Consensus 241 ~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
.+ ..|
T Consensus 739 ~~--------------~~~------------------------------------------------------------- 743 (990)
T 3cww_A 739 EV--------------QLP------------------------------------------------------------- 743 (990)
T ss_dssp BB--------------CCC-------------------------------------------------------------
T ss_pred eE--------------EcC-------------------------------------------------------------
Confidence 00 000
Q ss_pred CCCCCCCCCCCcccccceEE--EeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHH-HcCccccee
Q psy15403 321 TTPEWTTHPYGKDQLKTRGY--VTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELR-RRGWCNSLV 397 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR-~~g~~ys~~ 397 (471)
. .....+ ..+...+..+.+.+..+ ..+..+..++.+|+.+|. ++||.+|| +.|++|+++
T Consensus 744 -----------~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~ll~~il~----~~lf~~LRek~~lgY~v~ 805 (990)
T 3cww_A 744 -----------D--RGWFVYQQRNEVHNNSGIEIYYQTD-MQSTSENMFLELFAQIIS----EPAFNTLRTKEQLGYIVF 805 (990)
T ss_dssp -----------T--TEEEEEEEECSSCSSEEEEEEEEEE-ECCHHHHHHHHHHHHHHH----HHHHHHHTTTTCCCSEEE
T ss_pred -----------C--CCeEEEEecCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHHH----HHHHHHHHhccCCcEEEE
Confidence 0 001111 12233445566666654 244456678999999998 99999999 599999999
Q ss_pred eecCCCCCCee-EEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccc
Q psy15403 398 GGPRSGAKGFA-FFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEP 459 (471)
Q Consensus 398 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~ 459 (471)
++........+ .+.|...++| +++++.++.+.+++..+.+ ++++++|+++|..++...
T Consensus 806 s~~~~~~g~~~~~~~vqs~~dp---~~~~~~i~~f~~~~~~l~~-~~te~el~~~k~~li~~~ 864 (990)
T 3cww_A 806 SGPRRANGIQGLRFIIQSEKPP---HYLESRVEAFLITMEKSIE-DMTEEAFQKHIQALAIRR 864 (990)
T ss_dssp EEEEEETTEEEEEEEEEESSCH---HHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCEEEEEEEEeCCCCH---HHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHh
Confidence 98764322222 2334444566 6888899999999999988 899999999999988765
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.74 E-value=8.6e-19 Score=201.65 Aligned_cols=341 Identities=10% Similarity=0.030 Sum_probs=218.8
Q ss_pred CCcEEEEEeccCCCC-------CCccCCCCCCCCCHHHHHHHHHh-cCCCCCCChhHHHHHHHHcCCeeeEEec------
Q psy15403 17 EAMQYKQGYLSDPKD-------LPGYLSDPKDLPGLAHFCEHMLF-MGTETYPAENEYNKFLSEHSGYSNAYTS------ 82 (471)
Q Consensus 17 nGl~~~v~~~~~~~~-------~~Gs~~e~~~~~Gla~ll~~ll~-~Gt~~~~~~~~L~~~L~~~g~~l~~~t~------ 82 (471)
||+++.+...+.... +.|... .+..+...|+..++. .||++++. .+|.+.++.+++.++++++
T Consensus 725 ~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy-~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 725 GNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSS-EDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCH-HHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred CCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCceEEEeeeecccc
Confidence 788876665554444 666533 456677778877776 59999988 6999999999999887764
Q ss_pred ----------cceEEEEEEeChhhHHHHHHHHHHhhhCCCCChHH-HHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHcCC
Q psy15403 83 ----------ADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASS-TDREVNAVNSEHEKNIPN-DAWRLDQLEKATCDP 150 (471)
Q Consensus 83 ----------~d~t~~~~s~~~~~l~~~L~ll~~~l~~P~f~ee~-~~~~k~~~~~el~~~~~~-p~~~~~~~l~~~~~~ 150 (471)
.....+++.++.++++.+|+++.+++.+|.|++.+ +...+.+....+++...+ ...++...+...+.+
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 23468899999999999999999999999999876 777777777776654433 333445444444444
Q ss_pred CCCCCCCCCCChhhhcccCC------CCCcchHHHHHHHHHhhcccCCeEEEEEcCCC-HHHHHHHHHHhhccCCCC---
Q psy15403 151 KHDYNRFGTGNKETLETIPK------SKGIDVRNELLKFHNKWYSSNIMGLAILGKES-LDELEKYAVDKFKDVKNK--- 220 (471)
Q Consensus 151 ~~p~~~~~~Gt~e~I~~it~------~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d-~~~l~~lv~k~fg~lp~~--- 220 (471)
.+++.....| .+.+..+.. ..-..+.++|+++|++.|+++++.+.|+|+.+ .+++.+.+++.++.|+..
T Consensus 882 ~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~ 960 (1193)
T 3s5m_A 882 KHYAHNIIYG-YENYLKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEE 960 (1193)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHH
T ss_pred chhhhhhhCC-hHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhcccc
Confidence 4444333223 333332221 00112367999999999999999999999985 477777777777666421
Q ss_pred -CCC----CCCCCCCCCCcccccccceeccCccccceeeeecCCchhhhhhccCCCCCCCCcCCCCCCccccccCccccc
Q psy15403 221 -NVS----TPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPV 295 (471)
Q Consensus 221 -~~~----~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (471)
... .......+.. .......... .
T Consensus 961 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------------------~---------------------------- 989 (1193)
T 3s5m_A 961 NDKYINDMQNKVNDPTVM---GWNEEIKSKK--------------------L---------------------------- 989 (1193)
T ss_dssp GGGGSCCCCSSSCCCCCC---CHHHHHHHTT--------------------C----------------------------
T ss_pred cccccccccccccccccc---cccccccccc--------------------c----------------------------
Confidence 100 0000000000 0000000000 0
Q ss_pred cccccccccCCCCchhhhhhccCCcCCCCCCCCCCCcccccceEEEeecCCcceEEEEeecCCCcchhccCchhHHHHhh
Q psy15403 296 KDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLI 375 (471)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L 375 (471)
+.....++.....| ..++.+...++.. ...+.++.++.|++.+|
T Consensus 990 ----------------------------------~~~~~~~~e~~~~p-~~v~yv~~~~~~~-~~~~~d~~al~Vl~~iL 1033 (1193)
T 3s5m_A 990 ----------------------------------FDEEKVKKEFFVLP-TFVNSVSMSGILF-KPGEYLDPSFTVIVAAL 1033 (1193)
T ss_dssp ----------------------------------CCTTCCEEEEEECC-CSSBEEEEEEECS-CTTCBCCTHHHHHHHHH
T ss_pred ----------------------------------cccccccceeEecC-CcceEEEEEecCC-CCCCCchHHHHHHHHHH
Confidence 00000011111111 1233444444332 23344678999999999
Q ss_pred cCCCCCcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHh--cCCChHHHHHHHH
Q psy15403 376 GHEGPGSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHD--QGPQEWIFLELFV 453 (471)
Q Consensus 376 g~~~~~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~~~~~~~~k~ 453 (471)
|+ ++|+.+||++|.||++++++. ..|.|.++...+| +..+.++.+.++++.+++ +++++++|+++|.
T Consensus 1034 g~---~~L~~eIREkgGAYg~~s~~~----~~G~f~~~syrdp----~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~ 1102 (1193)
T 3s5m_A 1034 KN---SYLWDTVRGLNGAYGVFADIE----YDGSVVFLSARDP----NLEKTLATFRESAKGLRKMADTMTENDLLRYII 1102 (1193)
T ss_dssp HH---THHHHHHTTTTCCSEEEEEEC----TTSEEEEEEESBS----CSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred Cc---cHHHHHHHhcCCeeEEEEecc----CCCcEEEEEEeCC----CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 95 689999998777999999866 2467777766666 355677777777777777 7999999999999
Q ss_pred Hhcccc
Q psy15403 454 QIIHEP 459 (471)
Q Consensus 454 ~~i~~~ 459 (471)
++++..
T Consensus 1103 ~~~~~~ 1108 (1193)
T 3s5m_A 1103 NTIGTI 1108 (1193)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998774
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.46 E-value=1.4e-13 Score=126.93 Aligned_cols=122 Identities=6% Similarity=-0.035 Sum_probs=101.8
Q ss_pred EEEeecCCcceEEEEeecCCCcchhccCchhHHHHhhcCCCCCcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCc
Q psy15403 339 GYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTL 418 (471)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~ 418 (471)
+.+....+++.+.+.|+.|...+ .+..++.+|+.+|||+.+|+|+++|||+|++|+++++... ..+.|.|.|++.+.+
T Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~-~d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~-~~~~g~~~i~~~~~~ 93 (197)
T 3ih6_A 16 VTLRRAGGTPLVAAMYHLPAAGS-PDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMD-QLDPGLAMFGAQLQP 93 (197)
T ss_dssp ------CCSCEEEEEEECCCTTS-TTHHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEET-TSSSCEEEEEEECCT
T ss_pred EEEECCCCCceEEEEEecCCCCC-CcHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEecccc-ccCCeEEEEEEEECC
Confidence 33344457899999999997544 5778999999999999999999999988999999987764 467899999999998
Q ss_pred chhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcccchhhhh
Q psy15403 419 DGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNIL 464 (471)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~i~~~~~~~~ 464 (471)
+ .+++++++.+.++|++|+++|+++++|+++|++++....++..
T Consensus 94 ~--~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~ 137 (197)
T 3ih6_A 94 G--MDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYA 137 (197)
T ss_dssp T--SCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred C--CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 3 2588899999999999999999999999999999887765443
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=97.75 E-value=0.00014 Score=66.10 Aligned_cols=141 Identities=8% Similarity=0.005 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEE--ec----cceEEEEEEeChh-hHHHHHHHHHHhhhC---CCCCh
Q psy15403 46 AHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAY--TS----ADHTNYHFEVSPD-HLEKTLDIFSKFFIC---PLFDA 115 (471)
Q Consensus 46 a~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~--t~----~d~t~~~~s~~~~-~l~~~L~ll~~~l~~---P~f~e 115 (471)
..++..++..|. ++ .|.+.|...|...+++ .. .....+++.+.++ +.+.+++.+.+.+.. -.+++
T Consensus 44 l~vl~~iLggg~---sS--rL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~ 118 (197)
T 3ih6_A 44 LDLAATILADTP---SS--RLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQ 118 (197)
T ss_dssp HHHHHHHHHSST---TS--HHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCH
T ss_pred HHHHHHHHcCCC---Cc--hHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCCH
Confidence 345666666543 22 4555554455433332 21 2334555566566 688888887776644 46999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEE
Q psy15403 116 SSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGL 195 (471)
Q Consensus 116 e~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tL 195 (471)
+++++.|..+...+....+++..++.......+++ .+.. .....+.|.++| .++|+++.++++.++++++
T Consensus 119 ~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g-~~~~--~~~~~~~i~~vT-------~~dv~~~a~~~l~~~~~~~ 188 (197)
T 3ih6_A 119 EELERARSKWLTAWQQTYADPEKVGVALSEAIASG-DWRL--FFLQRDRVREAK-------LDDVQRAAVAYLVRSNRTE 188 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTT-CTTH--HHHHHHHHHTCC-------HHHHHHHHHHHSSGGGCEE
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcC-CHHH--HHHHHHHHHhCC-------HHHHHHHHHHhCCccCeEE
Confidence 99999999999999888888888888777776663 3311 122467899999 9999999999999999999
Q ss_pred EEEcCC
Q psy15403 196 AILGKE 201 (471)
Q Consensus 196 vVvGd~ 201 (471)
+++|.-
T Consensus 189 ~~~~P~ 194 (197)
T 3ih6_A 189 GRYIPT 194 (197)
T ss_dssp EEECC-
T ss_pred EEEeCC
Confidence 999863
No 24
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.38 E-value=0.00034 Score=70.83 Aligned_cols=141 Identities=9% Similarity=-0.007 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHcCCeeeEEec----c--ceEEEEEEeChhhHHHHHHHHHHhhhC---CCCChH
Q psy15403 46 AHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTS----A--DHTNYHFEVSPDHLEKTLDIFSKFFIC---PLFDAS 116 (471)
Q Consensus 46 a~ll~~ll~~Gt~~~~~~~~L~~~L~~~g~~l~~~t~----~--d~t~~~~s~~~~~l~~~L~ll~~~l~~---P~f~ee 116 (471)
..++.+++..|. .+ .|.+.|...|...+++.+ . ....+++.+.+++.+.+++.+.+.+.. -.++++
T Consensus 255 l~vl~~iLgg~~---~s--rL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~ 329 (406)
T 3eoq_A 255 GQVLAHLLGEEG---SG--RLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEE 329 (406)
T ss_dssp HHHHHHHHHCTT---TS--HHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCc---ch--HHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHH
Confidence 344566666432 22 465555556654433322 2 234566667788888888888776654 359999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEE
Q psy15403 117 STDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLA 196 (471)
Q Consensus 117 ~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLv 196 (471)
++++.|..+...+....+++...+.......++++.+... .-..+.|.++| .++|+++.++++.++++ ++
T Consensus 330 el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt-------~~dv~~~a~~~l~~~~~-~~ 399 (406)
T 3eoq_A 330 EVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSL--EEVKARVQRVT-------SREVNALLERGFLEKGL-YY 399 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCH--HHHHHHHHHCC-------HHHHHHHHHTTTTTSCE-EE
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHhCC-------HHHHHHHHHHhcCcccE-EE
Confidence 9999999999999988888888887777666654443221 22467899999 99999999999999999 99
Q ss_pred EEcCC
Q psy15403 197 ILGKE 201 (471)
Q Consensus 197 VvGd~ 201 (471)
++|+.
T Consensus 400 vvGp~ 404 (406)
T 3eoq_A 400 LVLPH 404 (406)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99975
No 25
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.35 E-value=0.0011 Score=67.19 Aligned_cols=128 Identities=8% Similarity=0.017 Sum_probs=89.6
Q ss_pred HHHHHHHHcCCeeeEEec------cceEEEEEEeCh-hhHHHHHHHHHHhhhCC--CCChHHHHHHHHHHHHHHHh--cC
Q psy15403 65 EYNKFLSEHSGYSNAYTS------ADHTNYHFEVSP-DHLEKTLDIFSKFFICP--LFDASSTDREVNAVNSEHEK--NI 133 (471)
Q Consensus 65 ~L~~~L~~~g~~l~~~t~------~d~t~~~~s~~~-~~l~~~L~ll~~~l~~P--~f~ee~~~~~k~~~~~el~~--~~ 133 (471)
.|.+.+...|...++..+ .....+++.+.+ ++.+.+++.+.+.+..- .+++++|++.|..+...+.. ..
T Consensus 275 ~L~~~lRe~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~ 354 (431)
T 3cx5_A 275 KLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYES 354 (431)
T ss_dssp THHHHHHTTTCCSEEEEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCceeeEeEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 355556555544433332 233445566666 77777777666544321 59999999999999999998 78
Q ss_pred CChHHHHHHHHHHHc-CCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCC
Q psy15403 134 PNDAWRLDQLEKATC-DPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKES 202 (471)
Q Consensus 134 ~~p~~~~~~~l~~~~-~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d 202 (471)
.++...+.......+ ++ .+... .-..+.|.+++ .++|+++.++++.+++++++++|+.+
T Consensus 355 ~~~~~~~~~~~~~~~~~g-~~~~~--~~~~~~i~~vt-------~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 355 GNPVNDANLLGAEVLIKG-SKLSL--GEAFKKIDAIT-------VKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp SCHHHHHHHHHHHHHHHS-SCCCH--HHHHHHHHHCC-------HHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred CCHHHHHHHHHHHHHhcC-CCCCH--HHHHHHHhcCC-------HHHHHHHHHHHcccCCcEEEEEcchh
Confidence 888877776665543 43 33221 22456789999 99999999999999999999999854
No 26
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.26 E-value=0.0015 Score=66.32 Aligned_cols=144 Identities=10% Similarity=0.006 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHc-CCee--eEEecc----ceEEEEEEeChhhHHHHHHHHHHhhhC---CCCC
Q psy15403 45 LAHFCEHMLFMGTETYPAENEYNKFLSEH-SGYS--NAYTSA----DHTNYHFEVSPDHLEKTLDIFSKFFIC---PLFD 114 (471)
Q Consensus 45 la~ll~~ll~~Gt~~~~~~~~L~~~L~~~-g~~l--~~~t~~----d~t~~~~s~~~~~l~~~L~ll~~~l~~---P~f~ 114 (471)
...++..++..| +... .|.+.|... |... ++.... ....+++.+.+++.+.+++.+.+.+.. -.++
T Consensus 268 ~l~vl~~iLg~~--~~~s--~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 343 (434)
T 3gwb_A 268 AVSLGNQILGGG--GFGT--RLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPT 343 (434)
T ss_dssp HHHHHHHHHHSS--SSCS--HHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCC--cccc--hhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCC
Confidence 344556666543 1223 466666443 4333 333321 344566677777778877777766644 3689
Q ss_pred hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeE
Q psy15403 115 ASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMG 194 (471)
Q Consensus 115 ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~t 194 (471)
+++|++.|..+...+....+++..++.......+++. ++.. .....+.|.++| .++|+++.++++.+++++
T Consensus 344 ~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~vt-------~~dv~~~a~~~l~~~~~~ 414 (434)
T 3gwb_A 344 QKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNL-PLSY-LEDFMRQSQELT-------VEQVKAAMNKHLNVDKMV 414 (434)
T ss_dssp HHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTC-CTTH-HHHHHHHHHHCC-------HHHHHHHHHHHCCGGGCE
T ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCC-CccH-HHHHHHHHHhCC-------HHHHHHHHHHhcChhhEE
Confidence 9999999999999999888888888877776665543 2221 112457899999 999999999999999999
Q ss_pred EEEEcCC
Q psy15403 195 LAILGKE 201 (471)
Q Consensus 195 LvVvGd~ 201 (471)
++++|+.
T Consensus 415 ~~vvg~~ 421 (434)
T 3gwb_A 415 IVSAGPT 421 (434)
T ss_dssp EEEEECC
T ss_pred EEEEcCc
Confidence 9999974
No 27
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.25 E-value=0.00076 Score=68.45 Aligned_cols=142 Identities=6% Similarity=0.022 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHH-HcCCeeeEEe----c--cceEEEEEEeChhhHHHHHHHHHHhhh---CCCCCh
Q psy15403 46 AHFCEHMLFMGTETYPAENEYNKFLS-EHSGYSNAYT----S--ADHTNYHFEVSPDHLEKTLDIFSKFFI---CPLFDA 115 (471)
Q Consensus 46 a~ll~~ll~~Gt~~~~~~~~L~~~L~-~~g~~l~~~t----~--~d~t~~~~s~~~~~l~~~L~ll~~~l~---~P~f~e 115 (471)
..++..++..|. .+ .|.+.+. +.|...+++. . .....+++.+.+++.+.+++.+.+.+. .-.+++
T Consensus 254 l~vl~~iLgg~~---~s--rL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~ 328 (421)
T 3hdi_A 254 LVLLNNVLGGSM---SS--RLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTE 328 (421)
T ss_dssp HHHHHHHHTSSS---SS--HHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHhCCCc---cc--HHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 344556655432 23 4655564 3454433322 2 233455556667788888887777654 346999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEE
Q psy15403 116 SSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGL 195 (471)
Q Consensus 116 e~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tL 195 (471)
+++++.|..+...+....+++...+.......++.+.+... .-..+.|.++| .+||+++.++++ ++++++
T Consensus 329 ~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt-------~~dv~~~a~~~~-~~~~~~ 398 (421)
T 3hdi_A 329 KELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSL--DEMIEQINAVQ-------KQDVSRLAKILL-SASPSI 398 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCH--HHHHHHHHHCC-------HHHHHHHHHHHT-TSCCEE
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHcCC-------HHHHHHHHHHHc-ccCcEE
Confidence 99999999999999888888887776665544443433211 22467899999 999999999999 999999
Q ss_pred EEEcCCC
Q psy15403 196 AILGKES 202 (471)
Q Consensus 196 vVvGd~d 202 (471)
+++|+.+
T Consensus 399 ~vvgp~~ 405 (421)
T 3hdi_A 399 SLINANG 405 (421)
T ss_dssp EEEESSC
T ss_pred EEECchh
Confidence 9999864
No 28
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.17 E-value=0.0029 Score=65.48 Aligned_cols=109 Identities=7% Similarity=0.135 Sum_probs=83.1
Q ss_pred ceEEEEEEeChhhHHHHHHHHHHhhhC------CCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCC
Q psy15403 84 DHTNYHFEVSPDHLEKTLDIFSKFFIC------PLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRF 157 (471)
Q Consensus 84 d~t~~~~s~~~~~l~~~L~ll~~~l~~------P~f~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~ 157 (471)
....+++.+.++++..+++.+...+.. -.+++++|++.|..+...+....+++...+.......+..+.+..
T Consensus 314 g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-- 391 (475)
T 1hr6_A 314 GIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP-- 391 (475)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC--
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC--
Confidence 344666677788888888887776654 249999999999999999988788888777666654433233322
Q ss_pred CCCChhhhcccCCCCCcchHHHHHHHHHhhccc---------CCeEEEEEcCC
Q psy15403 158 GTGNKETLETIPKSKGIDVRNELLKFHNKWYSS---------NIMGLAILGKE 201 (471)
Q Consensus 158 ~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p---------~n~tLvVvGd~ 201 (471)
..--.+.|.+++ .++|+++.++++.+ ++++++++|+.
T Consensus 392 ~~~~~~~i~~vt-------~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 392 VNEMISKIEDLK-------PDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHHHHHTCC-------HHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHHHHHcCC-------HHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 112456789999 99999999999988 68999999986
No 29
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.14 E-value=0.0043 Score=63.23 Aligned_cols=128 Identities=7% Similarity=0.106 Sum_probs=90.5
Q ss_pred HHHHHHH-HcCCeee--EEe----ccceEEEEEEeC--hhhHHHHHHHHHHhh---hCCCCChHHHHHHHHHHHHHHHhc
Q psy15403 65 EYNKFLS-EHSGYSN--AYT----SADHTNYHFEVS--PDHLEKTLDIFSKFF---ICPLFDASSTDREVNAVNSEHEKN 132 (471)
Q Consensus 65 ~L~~~L~-~~g~~l~--~~t----~~d~t~~~~s~~--~~~l~~~L~ll~~~l---~~P~f~ee~~~~~k~~~~~el~~~ 132 (471)
.|.+.+. ..|...+ +.. +.....+++.+. +++.+.+++.+.+.+ ..-.++++++++.|..+...+...
T Consensus 289 ~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~ 368 (443)
T 1hr6_B 289 PLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLS 368 (443)
T ss_dssp HHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHc
Confidence 4666665 4454322 222 123345555666 678888888877655 445699999999999999999988
Q ss_pred CCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCC
Q psy15403 133 IPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKE 201 (471)
Q Consensus 133 ~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~ 201 (471)
.+++..++.......+..+.+... .-..+.|.+++ .++|+++.++++.+++++++++|+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~i~~vt-------~~dv~~~a~~~l~~~~~~~~v~g~~ 428 (443)
T 1hr6_B 369 LDGSTAIVEDIGRQVVTTGKRLSP--EEVFEQVDKIT-------KDDIIMWANYRLQNKPVSMVALGNT 428 (443)
T ss_dssp CCSHHHHHHHHHHHHHHHSSCCCH--HHHHHHHHTCC-------HHHHHHHHHHHSSSCCEEEEEEECG
T ss_pred cCCHHHHHHHHHHHHHhcCCcCCH--HHHHHHHHhCC-------HHHHHHHHHHHhccCCcEEEEECCc
Confidence 888877766665554322333221 22457789999 9999999999999999999999984
No 30
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.13 E-value=0.0034 Score=64.27 Aligned_cols=128 Identities=8% Similarity=0.086 Sum_probs=90.2
Q ss_pred HHHHHHHHcCCee--eEEec--cc--eEEEEEEeChhhHHHHHHHHHHhhh---CCCCChHHHHHHHHHHHHHHHhcCCC
Q psy15403 65 EYNKFLSEHSGYS--NAYTS--AD--HTNYHFEVSPDHLEKTLDIFSKFFI---CPLFDASSTDREVNAVNSEHEKNIPN 135 (471)
Q Consensus 65 ~L~~~L~~~g~~l--~~~t~--~d--~t~~~~s~~~~~l~~~L~ll~~~l~---~P~f~ee~~~~~k~~~~~el~~~~~~ 135 (471)
.|.+.+...|... ++... .+ ...+++.+.+++.+.+++.+.+.+. +. ++++++++.|..+...+....++
T Consensus 293 rL~~~lr~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~-~t~~el~~ak~~~~~~~~~~~~~ 371 (446)
T 1pp9_A 293 PLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTS-ATESEVLRGKNLLRNALVSHLDG 371 (446)
T ss_dssp HHHHHHHHHTCCSEEEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhcCCeEEEEEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 4665565555433 22221 22 3455566667788888877766553 34 99999999999999999888888
Q ss_pred hHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCCC
Q psy15403 136 DAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKES 202 (471)
Q Consensus 136 p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~d 202 (471)
+...+.......+..+.+... .-..+.|.+++ .++|+++.++++.+++++++++|+.+
T Consensus 372 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~i~~vt-------~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 372 TTPVCEDIGRSLLTYGRRIPL--AEWESRIAEVD-------ARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHHHHHHHHHHHHHTSSCCCH--HHHHHHHHTCC-------HHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHHHHHHHHcCCCCCH--HHHHHHHHcCC-------HHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 887776665554333333321 12356789999 99999999999999999999999854
No 31
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.03 E-value=0.002 Score=65.18 Aligned_cols=144 Identities=8% Similarity=0.053 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHH-cCCeeeEEec--c----ceEEEEEEeChhhHHHHHHHHHHhhh---CCCCCh
Q psy15403 46 AHFCEHMLFMGTETYPAENEYNKFLSE-HSGYSNAYTS--A----DHTNYHFEVSPDHLEKTLDIFSKFFI---CPLFDA 115 (471)
Q Consensus 46 a~ll~~ll~~Gt~~~~~~~~L~~~L~~-~g~~l~~~t~--~----d~t~~~~s~~~~~l~~~L~ll~~~l~---~P~f~e 115 (471)
..++..++..| .... .|.+.|.. .|...+++.+ . ....+++.+.+++.+.+++.+.+.+. .-.+++
T Consensus 262 ~~vl~~iLg~~--~~~s--rL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~ 337 (424)
T 3amj_B 262 LVVGNYALGGG--GFES--RLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTD 337 (424)
T ss_dssp HHHHHHHHTTS--GGGS--HHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHhCCC--Cccc--hhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCH
Confidence 34556665432 1222 46666654 5555443332 2 23445556666777777777766654 335899
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEE
Q psy15403 116 SSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGL 195 (471)
Q Consensus 116 e~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tL 195 (471)
++|++.|..+...+.....++..++.......+++ .++... .-..+.|.+++ .++|+++.++++.++++++
T Consensus 338 ~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~vt-------~~dv~~~a~~~l~~~~~~~ 408 (424)
T 3amj_B 338 AELQAAKDNLINGFALRLDSNAKILGQVAVIGYYG-LPLDYL-DHYTERVQAVT-------VEQVREAFARHVKRENLIT 408 (424)
T ss_dssp HHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTT-CCTTTT-TSHHHHHHTCC-------HHHHHHHHHHHCCGGGCEE
T ss_pred HHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcC-CChhHH-HHHHHHHHcCC-------HHHHHHHHHHhcCccceEE
Confidence 99999999999998887788887777666555553 343322 23468899999 9999999999999999999
Q ss_pred EEEcCCC
Q psy15403 196 AILGKES 202 (471)
Q Consensus 196 vVvGd~d 202 (471)
+++|+..
T Consensus 409 ~~~~~~~ 415 (424)
T 3amj_B 409 VVVGGKA 415 (424)
T ss_dssp EEEECC-
T ss_pred EEECChh
Confidence 9999853
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=96.93 E-value=0.0087 Score=60.67 Aligned_cols=127 Identities=6% Similarity=0.007 Sum_probs=90.3
Q ss_pred HHHHHHH-HcCCeeeEEec----cc--eEEEEEEeChhhHHHHHHHHHHhhhC---CCCChHHHHHHHHHHHHHHHhcCC
Q psy15403 65 EYNKFLS-EHSGYSNAYTS----AD--HTNYHFEVSPDHLEKTLDIFSKFFIC---PLFDASSTDREVNAVNSEHEKNIP 134 (471)
Q Consensus 65 ~L~~~L~-~~g~~l~~~t~----~d--~t~~~~s~~~~~l~~~L~ll~~~l~~---P~f~ee~~~~~k~~~~~el~~~~~ 134 (471)
.|.+.|. +.|...+++++ .+ ...+++.+.+++++.+++.+.+.+.. -.++++++++.|..+...+....+
T Consensus 294 ~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~ 373 (439)
T 1pp9_B 294 SLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVE 373 (439)
T ss_dssp HHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 4666665 44544333322 22 23455566677888888877766643 469999999999999999988888
Q ss_pred ChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcCC
Q psy15403 135 NDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKE 201 (471)
Q Consensus 135 ~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd~ 201 (471)
++...+.......++++.+.. ..--.+.|.+++ .++|+++.++++. ++++++++|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt-------~~dv~~~a~~~~~-~~~~~~v~g~~ 430 (439)
T 1pp9_B 374 SSEGFLDEVGSQALAAGSYTP--PSTVLQQIDAVA-------DADVINAAKKFVS-GRKSMAASGNL 430 (439)
T ss_dssp SHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHTCC-------HHHHHHHHHHHHH-SCEEEEEEECG
T ss_pred CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhcCC-------HHHHHHHHHHHhc-CCceEEEECCc
Confidence 888777766665554443322 122456789999 9999999999988 89999999974
No 33
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=96.70 E-value=0.015 Score=59.42 Aligned_cols=141 Identities=8% Similarity=-0.088 Sum_probs=96.1
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHH-HHcCCeeeEEe--c---cc-eEEE--EEEeChh-hHHHHHHHHHHhhhC---CCC
Q psy15403 47 HFCEHMLFMGTETYPAENEYNKFL-SEHSGYSNAYT--S---AD-HTNY--HFEVSPD-HLEKTLDIFSKFFIC---PLF 113 (471)
Q Consensus 47 ~ll~~ll~~Gt~~~~~~~~L~~~L-~~~g~~l~~~t--~---~d-~t~~--~~s~~~~-~l~~~L~ll~~~l~~---P~f 113 (471)
.++..++..|. .+ .|.+.+ +..|...+++. . .+ ...| ++.+.++ +.+.+++.+.+.+.. -.+
T Consensus 269 ~vl~~iLg~~~---~s--rL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~ 343 (445)
T 3ami_A 269 EILAAVLDGYD---GA--RMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGV 343 (445)
T ss_dssp HHHHHHHHSST---TC--HHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCc---ch--HHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 45566665432 22 466654 35565543332 2 23 3344 4444444 477777766655543 358
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCe
Q psy15403 114 DASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIM 193 (471)
Q Consensus 114 ~ee~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~ 193 (471)
+++++++.|..+...+....+++..++.......+++..+ .. ..-..+.|.+++ .++|.++.++++.++++
T Consensus 344 t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~i~~vt-------~~dv~~~a~~~l~~~~~ 414 (445)
T 3ami_A 344 TEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSW-RD-DDRFYQQLRSVT-------AAEVKAAAARLLTDDTL 414 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCT-TH-HHHHHHHHHTCC-------HHHHHHHHHTTSCSTTE
T ss_pred CHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCCh-HH-HHHHHHHHHcCC-------HHHHHHHHHHHcCcCCe
Confidence 9999999999999999988888888777777666665432 11 112356789999 99999999999999999
Q ss_pred EEEEEcCC
Q psy15403 194 GLAILGKE 201 (471)
Q Consensus 194 tLvVvGd~ 201 (471)
+++++|..
T Consensus 415 ~~~~~~p~ 422 (445)
T 3ami_A 415 TVANLVPL 422 (445)
T ss_dssp EEEEEEEE
T ss_pred EEEEEccC
Confidence 99999974
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=95.74 E-value=0.044 Score=54.99 Aligned_cols=140 Identities=6% Similarity=-0.036 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHH-cCCeee--EEec--cceEEEEEEeChhhHHHHHHHHHHhhhC---CCCChH
Q psy15403 45 LAHFCEHMLFMGTETYPAENEYNKFLSE-HSGYSN--AYTS--ADHTNYHFEVSPDHLEKTLDIFSKFFIC---PLFDAS 116 (471)
Q Consensus 45 la~ll~~ll~~Gt~~~~~~~~L~~~L~~-~g~~l~--~~t~--~d~t~~~~s~~~~~l~~~L~ll~~~l~~---P~f~ee 116 (471)
...++.+++..|. .. .|.+.|.. .|...+ +... .....+++.+.+++++.+++.+.+.+.. -.++++
T Consensus 274 ~~~vl~~iLg~~~---~s--~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 348 (425)
T 3d3y_A 274 ALQVFNGIFGGFP---HS--KLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIREL 348 (425)
T ss_dssp HHHHHHHHHTTST---TS--HHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHhCCCh---hh--HHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3455666765432 22 46666653 354433 3332 2345566667788888888877765543 459999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEE
Q psy15403 117 STDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLA 196 (471)
Q Consensus 117 ~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~Gt~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLv 196 (471)
+|++.|..+...+....+++...+.......++.+.+.. ..--.+.|.+++ .++|+++.+++ .+++.. +
T Consensus 349 el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~vt-------~edv~~~a~~~-~~~~~~-~ 417 (425)
T 3d3y_A 349 EIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLT--AEEWIARINAVT-------IPEIQEVAKRL-ELQAIF-F 417 (425)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCCC--HHHHHHHHHHCC-------HHHHHHHHHHC-EEEEEE-E
T ss_pred HHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHhCC-------HHHHHHHHHhc-cCceEE-E
Confidence 999999999999988888888877777666666333322 122457789999 99999999996 465554 5
Q ss_pred EEcC
Q psy15403 197 ILGK 200 (471)
Q Consensus 197 VvGd 200 (471)
|+|+
T Consensus 418 v~g~ 421 (425)
T 3d3y_A 418 LEGE 421 (425)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 5554
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=94.32 E-value=0.25 Score=51.29 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=72.2
Q ss_pred cceEEEEEEeChhhHHHHHHHHHHhhhC---CCCChHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHcCCCCCC
Q psy15403 83 ADHTNYHFEVSPDHLEKTLDIFSKFFIC---PLFDASSTDREVNAVNSEHEKN-----IPNDAWRLDQLEKATCDPKHDY 154 (471)
Q Consensus 83 ~d~t~~~~s~~~~~l~~~L~ll~~~l~~---P~f~ee~~~~~k~~~~~el~~~-----~~~p~~~~~~~l~~~~~~~~p~ 154 (471)
.+...|.+.+..++.+.+++.+.+.+.. -.++++++++.|..+...+... ..+...++...+...+.. ..+
T Consensus 327 ~~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~ 405 (492)
T 3go9_A 327 RAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSG-VVD 405 (492)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHT-CCC
T ss_pred hcceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCc
Confidence 3455677888888988888887776654 3699999999999998887654 233444555555444322 121
Q ss_pred CCCC--CCC-hhhhcccCCCCCcchHHHHHHHHHhhcccCCeEEEEEcC
Q psy15403 155 NRFG--TGN-KETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGK 200 (471)
Q Consensus 155 ~~~~--~Gt-~e~I~~it~~~~~~~~edL~~f~~~~y~p~n~tLvVvGd 200 (471)
..+. .-. .+.|.++| .++|.++.++++.+++. ++|+|+
T Consensus 406 ~~~~~~~~~~~~~i~~vT-------~edV~~~a~~~l~~~~~-~vvvg~ 446 (492)
T 3go9_A 406 IAPEQYQKLRQAFLSGLT-------LAELNRELKQQLSQDTT-LVLMQP 446 (492)
T ss_dssp BCHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHTSCCE-EEEEEE
T ss_pred CCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhCCCCe-EEEEcC
Confidence 1110 001 13488999 99999999999997655 555554
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=58.27 E-value=51 Score=31.32 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=57.5
Q ss_pred CcceEEEEeecCCCcchhccCchhHHHHhhcCCCCC----cHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchh
Q psy15403 346 DVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPG----SLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGI 421 (471)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lg~~~~~----~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~ 421 (471)
+...+.+.+......+ .+.....++.+++..|... .+.+.+...|..++++.+.. ...+++.+.+
T Consensus 11 ~~v~~~~~~~~Gs~~e-~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~-------~t~~~~~~~~--- 79 (352)
T 3cx5_B 11 KISTLAVKVHGGSRYA-TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDRE-------YITLKATFLK--- 79 (352)
T ss_dssp SEEEEEEEESCSGGGC-SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSS-------CEEEEEEEEG---
T ss_pred ceEEEEEEEeeeccCC-CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccc-------eEEEEEEech---
Confidence 3445566665544443 3455678888888643222 24445555776655544322 3334455555
Q ss_pred hcHHHHHHHHHHHHHHHHhcCCChHHHH-HHHHHhcccch
Q psy15403 422 NHADDIVELLFQYIKLIHDQGPQEWIFL-ELFVQIIHEPC 460 (471)
Q Consensus 422 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~-~~k~~~i~~~~ 460 (471)
++.+.+++.+.+.+ ..-.+++++++ +.|..++.+..
T Consensus 80 ~~l~~~l~ll~d~~---~~p~f~~~~~~~~~k~~v~~e~~ 116 (352)
T 3cx5_B 80 DDLPYYVNALADVL---YKTAFKPHELTESVLPAARYDYA 116 (352)
T ss_dssp GGHHHHHHHHHHHH---HHBCCCHHHHHHTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHH
Confidence 45555666654444 34458999998 88877766544
No 37
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=32.68 E-value=89 Score=26.41 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=44.0
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .. .+.+.++++|.+.+.++.+.+.+.+..+.+ ++++++++.+...+
T Consensus 86 s~~l~~Le~~GlV~r~~~~~D-----rR--~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L 152 (166)
T 3deu_A 86 VRTLDQLEDKGLISRQTCASD-----RR--AKRIKLTEKAEPLIAEMEEVIHKTRGEILA-GISSEEIELLIKLI 152 (166)
T ss_dssp HHHHHHHHHTTSEEEC---------------CEEEECGGGHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeeCCCCC-----CC--eeEEEECHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 445566667999876533211 11 134678898888888888888888887755 89998888876554
No 38
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=31.66 E-value=93 Score=25.94 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=45.5
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|-++||+.......+ .+. +.+.++++|.+-+.++...+.+....+. .++++++++.+...+
T Consensus 64 s~~v~~Le~~GlV~R~~~~~D--rR~-----~~l~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 64 VRTLDQLEEKGLITRHTSAND--RRA-----KRIKLTEQSSPIIEQVDGVISSTRKEIL-GGISSDEIAVLSGLI 130 (151)
T ss_dssp HHHHHHHHHTTSEEEEECSSC--TTC-----EEEEECGGGHHHHHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEeecCCCC--Ccc-----hhhhcCHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 455666777999876644322 221 3367889888777777777777777664 589999888775543
No 39
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.35 E-value=71 Score=25.98 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=44.0
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. +.+.++++|.+-+.++...+.+.+..+...++++++++.+...+
T Consensus 68 s~~l~~Le~~glv~r~~~~~d--~R~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l 135 (147)
T 2hr3_A 68 AALLRELERGGLIVRHADPQD--GRR-----TRVSLSSEGRRNLYGNRAKREEWLVRAMHACLDESERALLAAAG 135 (147)
T ss_dssp HHHHHHHHHTTSEEEEC--------C-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEeeCCCCCC--CCc-----eeeEECHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 344455667999876532211 111 23568898888888888888888888776588888888776643
No 40
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=30.58 E-value=1e+02 Score=25.63 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=45.4
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|-++||+.......+ .+. +.+.++++|.+.+.++...+.+.+..+.+ ++++++++.+...+
T Consensus 85 s~~l~~Le~~Glv~r~~~~~D--rR~-----~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L 151 (161)
T 3e6m_A 85 SRTVDQLVDEGLAARSISDAD--QRK-----RTVVLTRKGKKKLAEISPLINDFHAELVG-NVDPDKLQTCIEVL 151 (161)
T ss_dssp HHHHHHHHHTTSEEECC---C--CCS-----CEEEECHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeeCCccc--CCe-----eEeeECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 445566667999876543222 121 34678898888888888888888888754 89999988876554
No 41
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=30.49 E-value=60 Score=26.40 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=42.2
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+ .+.+.++++|.+.+.++.....+....+ ++++++++.+...+
T Consensus 68 s~~l~~L~~~Glv~r~~~~~D--~R-----~~~~~LT~~G~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L 132 (140)
T 3hsr_A 68 TPLLKKLEKKDYVVRTREEKD--ER-----NLQISLTEQGKAIKSPLAEISVKVFNEF---NISEREASDIINNL 132 (140)
T ss_dssp HHHHHHHHHTTSEEEEC--------------CEEEECHHHHHTHHHHHHHHHHHHHTS---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEecCCCCC--cc-----eeeeeEChHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 445566667999886533221 11 1235788988887777777776666664 89999998886654
No 42
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=28.68 E-value=1.1e+02 Score=24.44 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=44.9
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+ .+.+.++++|.+-+.++.....+....+.+ ++++++++.+...+
T Consensus 65 s~~l~~Le~~Gli~r~~~~~D--~R-----~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l 131 (139)
T 3eco_A 65 SNLLRNLERKKLIYRYVDAQD--TR-----RKNIGLTTSGIKLVEAFTSIFDEMEQTLVS-QLSEEENEQMKANL 131 (139)
T ss_dssp HHHHHHHHHTTSEEEEECCC----C-----CEEEEECHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEeecCCCCC--CC-----eeeeEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 445566667999886643221 12 234678898888788888877777777654 88998888776544
No 43
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=27.73 E-value=1.2e+02 Score=25.45 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=44.7
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. +.+.++++|.+.+.++...+.+.+..+.+ ++++++++.+...+
T Consensus 77 s~~l~~Le~~GlV~r~~~~~D--rR~-----~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~ee~~~l~~~L 143 (168)
T 2nyx_A 77 GRMVDRLVGAELIDRLPHPTS--RRE-----LLAALTKRGRDVVRQVTEHRRTEIARIVE-QMAPAERHGLVRAL 143 (168)
T ss_dssp HHHHHHHHHTTSEEEEECSSC--SSC-----EEEEECHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeccCCCC--CCe-----eEEEECHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 445566667999976533211 121 23567888877778888888888877655 78888887776554
No 44
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=25.77 E-value=1.2e+02 Score=24.41 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=44.1
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. +.+.++++|.+.+.++...+.+.+..+. .++++++++.+...+
T Consensus 69 s~~l~~L~~~Glv~r~~~~~D--~R~-----~~~~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~L 135 (143)
T 3oop_A 69 NRIVDVLLRKELIVREISTED--RRI-----SLLSLTDKGRKETTELRDIVEASCEKMF-AGVTRTDLEQFTAIL 135 (143)
T ss_dssp HHHHHHHHHTTSEEEEC------CCS-----CEEEECHHHHHHHHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCCcc--Cce-----eeeeECHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 445566667999876533222 121 2357889888878888888777777765 589999888875543
No 45
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.06 E-value=1.2e+02 Score=25.13 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=45.4
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. +.+.++++|.+.+.++...+.+.+..+. .++++++++.+...+
T Consensus 78 s~~l~~Le~~Glv~r~~~~~D--rR~-----~~l~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~L 144 (162)
T 3k0l_A 78 NKILQDLLANGWIEKAPDPTH--GRR-----ILVTVTPSGLDKLNQCNQVVQQLEAQML-QGVDINLAFLIRNNL 144 (162)
T ss_dssp HHHHHHHHHTTSEEEEECCSS--SCC-----EEEEECHHHHHHHHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCeEecCCCCc--CCe-----eEeEECHhHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 455566667999987643322 121 3367889888878888877777777764 578998888776554
No 46
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=24.73 E-value=1e+02 Score=25.22 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=42.4
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|-++||+.......+ .. .+.+.++++|.+.+.++...+.+.+..+. .++++++++.+...+
T Consensus 72 s~~l~~Le~~Glv~r~~~~~D-----~R--~~~~~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~L 138 (150)
T 3fm5_A 72 VGLVDELEERGLVVRTLDPSD-----RR--NKLIAATEEGRRLRDDAKARVDAAHGRYF-EGIPDTVVNQMRDTL 138 (150)
T ss_dssp HHHHHHHHTTTSEEC------------------CEECHHHHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeeCCccc-----cc--hheeeECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 445556667999876532221 11 23467889888888888888887777775 589998888876554
No 47
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=24.59 E-value=1.6e+02 Score=23.25 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=43.2
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. +.+.++++|.+-+.++...+.+.+..+. .++++++++.+...+
T Consensus 65 s~~l~~L~~~gli~r~~~~~d--~r~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 131 (139)
T 3bja_A 65 TTMIQRMKRDGYVMTEKNPND--QRE-----TLVYLTKKGEETKKQVDVQYSDFLKENC-GCFTKEEEGILEDLL 131 (139)
T ss_dssp HHHHHHHHHTTSEEEEECSSC--TTC-----EEEEECHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeeccCCCC--Cce-----eEEEECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 334455557999876533211 121 2346788887777777777777777765 588998888776554
No 48
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=24.58 E-value=1.4e+02 Score=24.63 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=45.2
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|-++||+.......+ .+ .+.+.++++|.+.+.++.+.+.+.+..+. .++++++++.+...+
T Consensus 82 s~~l~~Le~~Glv~r~~~~~D--rR-----~~~l~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 148 (159)
T 3s2w_A 82 ARAIQKLVDEGYVFRQRDEKD--RR-----SYRVFLTEKGKKLEPDMKKIASEWGEILF-SSFDDRQRREITNSL 148 (159)
T ss_dssp HHHHHHHHHTTSEEEEECC-----C-----CEEEEECHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEecCCCC--CC-----eeEEEECHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 455566667999876533221 11 13457889888888888888888777764 478998888775544
No 49
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=24.32 E-value=2.2e+02 Score=22.40 Aligned_cols=67 Identities=10% Similarity=-0.032 Sum_probs=43.9
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+...... .+.. ...+.++++|.+-+.++...+.+.+..+.+ ++++++++.+...+
T Consensus 70 s~~l~~L~~~glv~r~~~~-----~d~R--~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l 136 (140)
T 2nnn_A 70 KGVVERLDKRGLIQRSADP-----DDGR--RLLVSLSPAGRAELEAGLAAAREINRQALA-PLSLQEQETLRGLL 136 (140)
T ss_dssp HHHHHHHHHTTCEEEEEET-----TEEE--EEEEEECHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeeCCC-----CCCC--eeeeEECHhHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 3445566679998764321 1111 234677888877777777777777777654 78999988876554
No 50
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=24.11 E-value=1.4e+02 Score=23.82 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=43.1
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. ..+.++++|.+-+.++...+.+....+. .++++++++.+...+
T Consensus 68 s~~l~~Le~~Gli~r~~~~~d--~R~-----~~i~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 134 (141)
T 3bro_A 68 TVLLQRMEIKKLLYRKVSGKD--SRQ-----KCLKLTKKANKLETIILSYMDSDQSQMT-SGLNKEEVVFLEKIL 134 (141)
T ss_dssp HHHHHHHHHTTSEEEEECSSC--TTS-----EEEEECHHHHTTHHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeeCCCcC--CCe-----eeeEECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 344566667999976543221 222 2356788887777777776666666654 488888888776544
No 51
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=23.52 E-value=1.3e+02 Score=24.32 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=42.0
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|-++||+.......+ .+ .+.+.++++|.+.+.++.+.+.+.+..+. .++++++++.+...+
T Consensus 69 s~~l~~L~~~Glv~r~~~~~D--rR-----~~~~~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 135 (142)
T 3ech_A 69 TRKIRELEGRNLVRRERNPSD--QR-----SFQLFLTDEGLAIHLHAELIMSRVHDELF-APLTPVEQATLVHLL 135 (142)
T ss_dssp HHHHHHHHHTTSEEC-----------------CCEECHHHHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEeeccCCCC--CC-----eeeeEECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 444555667999876533221 11 13357889888888888887777777765 578998888775543
No 52
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.09 E-value=1.7e+02 Score=23.32 Aligned_cols=67 Identities=16% Similarity=0.050 Sum_probs=42.6
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|-++||+.......+ .+. +.+.++++|.+.+.++...+.+.+..+. .++++++++.+...+
T Consensus 70 s~~l~~L~~~glv~r~~~~~d--~R~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 136 (146)
T 2fbh_A 70 ARLLDGLESQGLVRRLAVAED--RRA-----KHIVLTPKADVLIADIEAIAASVRNDVL-TGIDESEQALCQQVL 136 (146)
T ss_dssp HHHHHHHHHTTSEEEECCBTT--BCS-----CEEEECTTHHHHHHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeecCCCcc--cCe-----eeeEECHhHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 344455667999876532211 111 1256788877777777777777777765 588888888775544
No 53
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=23.06 E-value=1.6e+02 Score=24.03 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=44.0
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. +.+.++++|.+-+.++...+.+.+..+.+ ++++++++.+...+
T Consensus 76 s~~l~~Le~~Gli~r~~~~~d--~R~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~ee~~~l~~~L 142 (154)
T 2eth_A 76 TNVVDSLEKRGLVVREMDPVD--RRT-----YRVVLTEKGKEIFGEILSNFESLLKSVLE-KFSEEDFKVVSEGF 142 (154)
T ss_dssp HHHHHHHHHTTSEEEEECTTT--SSC-----EEEEECHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeeCCCCC--cce-----eEEEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 344566667999876532211 121 22567888877777777777777777654 88888888876554
No 54
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=22.69 E-value=1.9e+02 Score=22.66 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=39.9
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHH--------HHHHH-hcCCChHHHHHH
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQY--------IKLIH-DQGPQEWIFLEL 451 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------l~~i~-~~~~~~~~~~~~ 451 (471)
+++.+.|-++||+..... . + -.+++.++++|.....++.+.+.+. +..+. ..++++++++.+
T Consensus 46 ~~~l~~L~~~Glv~r~~~----~-r----r~~~~~lT~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l 116 (123)
T 1okr_A 46 RTLITRLYKKGFIDRKKD----N-K----IFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEEL 116 (123)
T ss_dssp HHHHHHHHHHTSEEEEEE----T-T----EEEEEESSCHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEec----C-C----eEEEEEecCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCHHHHHHH
Confidence 444555667999987643 1 1 1234678887655444444444443 23333 478999999988
Q ss_pred HHHh
Q psy15403 452 FVQI 455 (471)
Q Consensus 452 k~~~ 455 (471)
...+
T Consensus 117 ~~~L 120 (123)
T 1okr_A 117 RNIL 120 (123)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 55
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=22.57 E-value=1.9e+02 Score=23.39 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=43.8
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. +.+.++++|.+.+.++...+...+..+. .++++++++.+...+
T Consensus 72 s~~l~~Le~~Glv~r~~~~~d--~R~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 138 (152)
T 3bj6_A 72 SRILQEVQRAGLIERRTNPEH--ARS-----HRYWLTPRGEAIITAIRADEMAKLALFS-EGFSSVELTAYHKVQ 138 (152)
T ss_dssp HHHHHHHHHTTSEEEECCSSS--TTS-----CEEEECHHHHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeecCCccc--ccc-----eeeEEChhhHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 344556667999877543221 121 1256788887777777777777777765 478888888776554
No 56
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.89 E-value=1.8e+02 Score=23.62 Aligned_cols=67 Identities=9% Similarity=-0.026 Sum_probs=43.8
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. +.+.++++|.+-+.++...+...+..+. .++++++++.+...+
T Consensus 69 s~~l~~Le~~glv~r~~~~~d--~R~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 135 (155)
T 1s3j_A 69 TLMADRLEQKNLIARTHNTKD--RRV-----IDLSLTDEGDIKFEEVLAGRKAIMARYL-SFLTEEEMLQAAHIT 135 (155)
T ss_dssp HHHHHHHHHTTSEEEEECSSC--TTS-----EEEEECHHHHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEeecCCCCC--Cce-----EEEEECHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 344455667999877543221 222 2256788877777777777777777765 488888888776654
No 57
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=21.41 E-value=2.4e+02 Score=22.19 Aligned_cols=67 Identities=12% Similarity=0.008 Sum_probs=43.7
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++|++...... .+. -...+.++++|.+-+.++.+.+.+.+..+. .++++++++.+...+
T Consensus 61 s~~l~~L~~~glv~~~~~~-----~d~--R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 127 (138)
T 3bpv_A 61 ARTLRRLEESGFIEREQDP-----ENR--RRYILEVTRRGEEIIPLILKVEERWEDLLF-RDFTEDERKLFRKMC 127 (138)
T ss_dssp HHHHHHHHHTTSEEEEEET-----TEE--EEEEEEECHHHHHTHHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeecCC-----CCc--eeEEeeECHhHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 3444556679998764322 111 223456888887777777777777777664 588998888776554
No 58
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.33 E-value=1.6e+02 Score=19.09 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHH
Q psy15403 428 VELLFQYIKLIHDQGPQEWIFLELFV 453 (471)
Q Consensus 428 ~~~~~~~l~~i~~~~~~~~~~~~~k~ 453 (471)
+.++..+|..+++.|++.+++..+-.
T Consensus 2 laalkselqalkkegfspeelaales 27 (48)
T 1g6u_A 2 LAALKSELQALKKEGFSPEELAALES 27 (48)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35677889999999999999876643
No 59
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=21.06 E-value=1.6e+02 Score=23.42 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=42.0
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHH-HHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLF-QYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. ..+.++++|.+-+.++.+.+. +....+. .++++++.+.+...+
T Consensus 66 s~~l~~L~~~gli~r~~~~~d--~R~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 133 (138)
T 1jgs_A 66 TRMLDRLVCKGWVERLPNPND--KRG-----VLVKLTTGGAAICEQCHQLVGQDLHQELT-KNLTADEVATLEYLL 133 (138)
T ss_dssp HHHHHHHHHTTSEEEEECTTC--SSC-----EEEEECHHHHHHHHHHHHHHHHHHHHHHH-TTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEecCCccc--Cce-----eEeEEChhHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 344556667999876532211 121 235688888777777777776 5555554 578888887776554
No 60
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=20.98 E-value=1.7e+02 Score=23.40 Aligned_cols=67 Identities=18% Similarity=0.051 Sum_probs=42.8
Q ss_pred CcHHHHHHHcCcccceeeecCCCCCCeeEEEEEEEcCcchhhcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 381 ~~L~~~lR~~g~~ys~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++.+.|.++||+.......+ .+. +.+.++++|.+.+.++...+.+....+ -.++++++++.+...+
T Consensus 61 s~~l~~Le~~gli~r~~~~~d--~R~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~-~~~l~~~e~~~l~~~l 127 (144)
T 1lj9_A 61 ARAIKRLEEQGFIYRQEDASN--KKI-----KRIYATEKGKNVYPIIVRENQHSNQVA-LQGLSEVEISQLADYL 127 (144)
T ss_dssp HHHHHHHHHTTSEEEEECSSC--TTC-----EEEEECHHHHHHHHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeecCCCC--Cce-----eeeEEChhHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Confidence 344556667999987543222 121 235678887777777777777766665 4578888888776554
No 61
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=20.77 E-value=1.3e+02 Score=21.34 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 424 ADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 424 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++++..++..+ .+.|+++..|+++|+-+
T Consensus 17 IedVI~~vr~~F---~~~Gvde~vL~eLk~~W 45 (57)
T 1nvp_B 17 IEDVINDVRDIF---LDDGVDEQVLMELKTLW 45 (57)
T ss_dssp HHHHHHHHHHHH---HHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHcCCCHHHHHHHHHHH
Confidence 344555554443 46799999999998765
No 62
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=20.60 E-value=1.2e+02 Score=21.14 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy15403 424 ADDIVELLFQYIKLIHDQGPQEWIFLELFVQI 455 (471)
Q Consensus 424 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~k~~~ 455 (471)
+++++..++.. ..+.|+++..|+++|+.+
T Consensus 13 I~dVI~~vr~~---F~~~Gvde~vL~eLk~~W 41 (53)
T 1nh2_B 13 VESVVNEVRED---FENAGIDEQTLQDLKNIW 41 (53)
T ss_dssp HHHHHHHTHHH---HHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHcCCcHHHHHHHHHHH
Confidence 34444444444 347899999999998764
Done!