RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15403
(471 letters)
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification, protein
turnover, chaperones].
Length = 937
Score = 323 bits (831), Expect = e-101
Identities = 139/418 (33%), Positives = 198/418 (47%), Gaps = 101/418 (24%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G DP++ PGLAHF EHMLFMG+E YP E +++FLS+H G NA T+ + T ++FEV
Sbjct: 55 GSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVE 114
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
D LE LD F+ FFI PLF+ + DRE NAVNSE N+ +D WR+ Q++ T +P H
Sbjct: 115 NDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHP 174
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
++F TGN ETL P G+ V+ EL +FH K YS+N M L I G + LDEL K A D
Sbjct: 175 LSKFSTGNLETLSDKP---GLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADL 231
Query: 214 FKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
F D+ N+ P P+P + ++ K +
Sbjct: 232 FGDIPNRARKIPP-----------------------------IPVPVVTDEQT-GKII-- 259
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
++ P K L + FPI D + +
Sbjct: 260 -----------------HIVPAKPRPRLRIYFPIDD----------------NSAKF--- 283
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
+S PD YLSHLIG+E PGSLL+ L+++G
Sbjct: 284 ------------------------------RSKPDEYLSHLIGNESPGSLLAWLKKQGLI 313
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLEL 451
L G + + F ++ +LT G+ H D ++ L FQY+ L+ ++G ++ F EL
Sbjct: 314 TELSAGLDPISGNYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKGIPKYTFDEL 371
Score = 29.6 bits (67), Expect = 4.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 450 ELFVQIIHEPCFNILRTK 467
L Q+IH F+ LRTK
Sbjct: 757 SLLGQLIHPWFFDQLRTK 774
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional.
Length = 961
Score = 172 bits (439), Expect = 2e-46
Identities = 92/247 (37%), Positives = 126/247 (51%), Gaps = 20/247 (8%)
Query: 27 SDPK--------DLP-GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYS 77
SDP+ LP G L DP GLAH+ EHM+ MG++ YP + +FL +H G
Sbjct: 59 SDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSH 118
Query: 78 NAYTSADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDA 137
NA T++ T ++ EV D L +D + PL D + DRE NAVN+E D
Sbjct: 119 NASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDG 178
Query: 138 WRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAI 197
R+ Q+ T +P H +RF GN ETL P SK +++ L+ F+ ++YS+N+M I
Sbjct: 179 MRMAQVSAETINPAHPGSRFSGGNLETLSDKPGSK---LQDALVDFYQRYYSANLMKAVI 235
Query: 198 LGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRG----YVTPVKDVRSLL 253
+ L EL K A D F V NKN S PE T P D +G YV P + + L
Sbjct: 236 YSNQPLPELAKLAADTFGRVPNKNASVPEITV-PVVTD--AQKGIIIHYV-PAQPRKVLR 291
Query: 254 VTFPIPD 260
V F I +
Sbjct: 292 VEFRIDN 298
Score = 69.6 bits (171), Expect = 1e-12
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 21/146 (14%)
Query: 317 NKNVTTPEWTTHPYGKDQLKTRG----YVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLS 372
NKN + PE T P D +G YV P + + L V F I + + +S D Y+S
Sbjct: 257 NKNASVPEITV-PVVTD--AQKGIIIHYV-PAQPRKVLRVEFRIDNNSAKFRSKTDEYIS 312
Query: 373 HLIGHEGPGSLLSELRRRGWCNSLVGGPRSGA-------KGFAFFTVTVDLTLDGINHAD 425
+LIG+ PG+L L+++G L G +GA G F ++V LT G+ D
Sbjct: 313 YLIGNRSPGTLSDWLQKQG----LAEGISAGADPMVDRNSGV--FAISVSLTDKGLAQRD 366
Query: 426 DIVELLFQYIKLIHDQGPQEWIFLEL 451
+V +F Y+ L+ ++G + F EL
Sbjct: 367 QVVAAIFSYLNLLREKGIDKSYFDEL 392
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16).
Length = 149
Score = 127 bits (321), Expect = 5e-35
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G +P D GLAHF EHM F GT+ YP+E+ + L + G NAYTS +HT Y+ EV
Sbjct: 22 GSRYEPDDNNGLAHFLEHMAFKGTKKYPSED-LEEELEKLGGSLNAYTSREHTVYYVEVL 80
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDR-------EVNAVNSEHEKNIPN----DAWRLDQ 142
D L K +D + FF+ PLF S +R EV AV++E + + + A+R
Sbjct: 81 NDDLPKAVDRLADFFLNPLFSPSEVERERLVVLYEVEAVDAEPQAVLLDNLHAAAYRGTP 140
Query: 143 LEKATCDPK 151
L ++ P
Sbjct: 141 LGRSLLGPG 149
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function
prediction only].
Length = 438
Score = 116 bits (291), Expect = 3e-28
Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 13/235 (5%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G ++P G+AHF EHM F GT P+ E + + G NA+TS D+T Y+ V
Sbjct: 48 GSRAEPAGKAGIAHFLEHMAFKGTTGLPS-AELAEAFEKLGGQLNAFTSFDYTVYYLSVL 106
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRL-DQLEKATCDPKH 152
PD+L+K LD+ + + P FD +RE + E + ++L +A H
Sbjct: 107 PDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALY-GNH 165
Query: 153 DYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVD 212
R G +E++E I R +L F+ KWY + M L ++G +E+ +
Sbjct: 166 PLGRPILGTEESIEAIT-------REDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEK 218
Query: 213 KFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDV--RSLLVTFPIPDLQEQH 265
F D+ P G +++ R D+ L + +P PD
Sbjct: 219 YFGDLPGAAPPPKIPPEPPLGPERV-VRVNDPEQPDLEQAWLALGYPGPDYDSPD 272
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and is
thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 94.9 bits (236), Expect = 1e-20
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 12/181 (6%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G +P PGLAHF EH+LF+G E + ++ ++ G NA T T + FE+
Sbjct: 31 GSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELP 90
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLE-KATCDPKH 152
L L PL A RE + +E+ NDA L + H
Sbjct: 91 AAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIA-WQNDADTLREAALLDALQAGH 149
Query: 153 DYNRFGTGNKETLETIPKSKGIDV---RNELLKFHNKWYSSNIMGLAILGKESLDELEKY 209
RF G++++L + + L FH + Y + M L + G +SLDELE+
Sbjct: 150 PLRRFHAGSRDSL-------ALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQL 202
Query: 210 A 210
A
Sbjct: 203 A 203
Score = 37.2 bits (86), Expect = 0.018
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 370 YLSHLIGHEGPGSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVE 429
L + E PG LL++LR RG S+ G A + A I +
Sbjct: 259 LLCEFLQDEAPGGLLAQLRERGLAESVAATWLYQDAGQALLALEFSARCISAAAAQQIEQ 318
Query: 430 LLFQYIKLIHDQ 441
LL Q++ + +Q
Sbjct: 319 LLTQWLGALAEQ 330
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.
Peptidase M16 consists of two structurally related
domains. One is the active peptidase, whereas the other
is inactive. The two domains hold the substrate like a
clamp.
Length = 182
Score = 71.0 bits (174), Expect = 2e-14
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 315 KKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRS--LLVTFPIPDLQEQHKSGPDNYLS 372
+ P+ P ++L + V P KDV L + FP P L S + L+
Sbjct: 43 DLPASPPKPKPREPPLEPEELTGKEVVVPDKDVPQAKLALAFPGPPLGNDPDSAALDVLA 102
Query: 373 HLIGHEGPGSLLSELR-RRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELL 431
L+G L ELR + G S+ S F + DL + + D+++EL+
Sbjct: 103 ELLGGGASSRLFQELREKEGLAYSVSAFFDSY-SDTGLFGIYADLDPE---NLDEVIELI 158
Query: 432 FQYIKLIHDQGPQEWIFLEL 451
F+ +K + ++G E
Sbjct: 159 FEELKKLAEEGITEEELERA 178
Score = 62.1 bits (151), Expect = 3e-11
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 177 RNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQ 236
R +L F+ K YS + M L ++G LDEL A F D+ P+ P ++
Sbjct: 4 REDLKDFYKKHYSPDNMVLVVVGDVDLDELLALAEKYFGDLPASPPK-PKPREPPLEPEE 62
Query: 237 LKTRGYVTPVKDVRS--LLVTFPIPDL 261
L + V P KDV L + FP P L
Sbjct: 63 LTGKEVVVPDKDVPQAKLALAFPGPPL 89
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 39.2 bits (92), Expect = 0.004
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 39 PKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEH-SGYSNAYTSADHTNYHF 90
P D G+AH EH + G++ YP ++ + K L + + NA+T D T Y
Sbjct: 53 PHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPA 105
>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional.
Length = 1119
Score = 33.6 bits (77), Expect = 0.25
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYS---NAYTSADHTNYHF 90
G+ H EH + G++ Y ++ + L G++ NAYT D T+Y F
Sbjct: 131 GIPHILEHSVLSGSKKYNYKDSF--SLLVQGGFNSFLNAYTFKDRTSYLF 178
>gnl|CDD|202321 pfam02630, SCO1-SenC, SCO1/SenC. This family is involved in
biogenesis of respiratory and photosynthetic systems.
SCO1 is required for a post-translational step in the
accumulation of subunits COXI and COXII of cytochrome c
oxidase. SenC is required for optimal cytochrome c
oxidase activity and maximal induction of genes encoding
the light-harvesting and reaction centre complexes of R.
capsulatus.
Length = 152
Score = 29.7 bits (67), Expect = 1.8
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 29/113 (25%)
Query: 103 IFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNK 162
I+ F CP + DR + + +NI Q + DP+ D
Sbjct: 35 IYFGFTNCPDICPPALDRLTDIIKKLKAENI------DVQPVFISVDPERD--------- 79
Query: 163 ETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFK 215
++LK + K + + +GL E +K+ V K
Sbjct: 80 --------------TPKVLKEYLKNFHPSFIGLTGTTDEIKSVAKKFKVFYSK 118
>gnl|CDD|234641 PRK00111, PRK00111, hypothetical protein; Provisional.
Length = 180
Score = 29.9 bits (67), Expect = 1.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 365 SGPDN-YLSHLIGHEGPGSLLS-ELRRRGWCNSLVGG 399
+G D ++ G E GS+L+ E++RRGW + GG
Sbjct: 53 TGLDGRRKRYVRGAESLGSVLNKEIQRRGWGKDIAGG 89
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 29.5 bits (67), Expect = 3.6
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 16/97 (16%)
Query: 30 KDLPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSG--------YSNAYT 81
DL + LP L FC+ + +GTE Y E + + H+G SN
Sbjct: 98 FDLNALPEE--LLPYLPLFCDVLTKLGTENYSYR-ELEEEILLHTGGISFSVSVSSNPDD 154
Query: 82 SADHTNYHFEVS----PDHLEKTLDIFSKFFICPLFD 114
+ + F +S + K ++ S+ FD
Sbjct: 155 TDKYEPS-FVISGKALNSKVPKLFELISEILNETDFD 190
>gnl|CDD|233956 TIGR02630, xylose_isom_A, xylose isomerase. Members of this family
are the enzyme xylose isomerase (5.3.1.5), which
interconverts D-xylose and D-xylulose [Energy
metabolism, Sugars].
Length = 434
Score = 29.2 bits (66), Expect = 4.5
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 178 NELLKFHNKWYSS--NIMGLAIL-GKESLDELEKYAVDKFKDVKNK 220
L KF + YSS + +G I GK L++LEKYA++K D +NK
Sbjct: 374 GFLDKFVAERYSSFNSGIGADIEAGKTDLEDLEKYALEKGDDPENK 419
>gnl|CDD|200248 TIGR03152, cyto_c552_HCOOH, formate-dependent cytochrome c nitrite
reductase, c552 subunit. Members of this protein family
are cytochrome c552, a component of cytochrome c nitrite
reductase, which is known more formally as nitrite
reductase (cytochrome; ammonia-forming) (EC 1.7.2.2).
Nitrate can be reduced by several enzymes. EC 1.7.2.2
reduces nitrite all the way to ammonia, rather than to
ammonium hydroxide (nitrite reductase (NAD(P)H), EC
1.7.1.4) or nitric oxide (nitrite reductase
(NO-forming), EC 1.7.2.1). Some examples of EC 1.7.2.2
occur in a seven gene system that enables
formate-dependent nitrite reduction, but is also found
in simpler contexts. Members of this protein family,
however, belong to the formate-dependent system [Energy
metabolism, Electron transport].
Length = 439
Score = 29.4 bits (66), Expect = 4.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 227 WTTHPYGKDQLKTRGYVTPVKDVRSLLVT 255
W + + KD K RG++ V DVR L T
Sbjct: 42 WAGYAFAKDYNKPRGHIYAVTDVRETLRT 70
Score = 29.4 bits (66), Expect = 4.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 276 WTTHPYGKDQLKTRGYVTPVKDVRSLLVT 304
W + + KD K RG++ V DVR L T
Sbjct: 42 WAGYAFAKDYNKPRGHIYAVTDVRETLRT 70
Score = 29.4 bits (66), Expect = 4.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 325 WTTHPYGKDQLKTRGYVTPVKDVRSLLVT 353
W + + KD K RG++ V DVR L T
Sbjct: 42 WAGYAFAKDYNKPRGHIYAVTDVRETLRT 70
>gnl|CDD|178240 PLN02633, PLN02633, palmitoyl protein thioesterase family protein.
Length = 314
Score = 28.3 bits (63), Expect = 8.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 24 GYLSDPKDLPGYLSDPKDLPGL 45
GY PKD+ YL K LP L
Sbjct: 171 GYYKIPKDVTEYLKGSKYLPKL 192
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.419
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,379,616
Number of extensions: 2348233
Number of successful extensions: 1786
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1772
Number of HSP's successfully gapped: 30
Length of query: 471
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 371
Effective length of database: 6,502,202
Effective search space: 2412316942
Effective search space used: 2412316942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)