RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15403
(471 letters)
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 358 bits (919), Expect = e-114
Identities = 195/429 (45%), Positives = 256/429 (59%), Gaps = 98/429 (22%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G LSDP ++ GL+HF +HMLF+GT+ YP ENEY++FLSEH+G SNA+TS +HTNY+F+VS
Sbjct: 66 GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVS 125
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+HLE LD F++FF+ PLFD S+ DREVNAV+SEHEKN+ NDAWRL QLEKAT +PKH
Sbjct: 126 HEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHP 185
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
+++FGTGNK TLET P +GIDVR ELLKFH+ +YSSN+M + +LG+ESLD+L V
Sbjct: 186 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKL 245
Query: 214 FKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
F +V+NKNV PE+ HP+ ++ LK
Sbjct: 246 FSEVENKNVPLPEFPEHPFQEEHLK----------------------------------- 270
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
+ P+KD+R+L VT
Sbjct: 271 --------------QLYKIVPIKDIRNLYVT----------------------------- 287
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
FPIPDLQ+ +KS P +YL HLIGHEGPGSLLSEL+ +GW
Sbjct: 288 --------------------FPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWV 327
Query: 394 NSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFV 453
N+LVGG ++GA+GF FF + VDLT +G+ H +DI+ +FQYI+ + +GPQEW+F EL
Sbjct: 328 NTLVGGQKAGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKD 387
Query: 454 QIIHEPCFN 462
F
Sbjct: 388 LNAVAFRFK 396
Score = 38.7 bits (89), Expect = 0.004
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 422 NHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNILRTK 467
H + +E+ +Q Q E +FLELF QII EP FN LRTK
Sbjct: 756 VHNNSGIEIYYQ----TDMQSTSENMFLELFAQIISEPAFNTLRTK 797
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 326 bits (837), Expect = e-103
Identities = 103/419 (24%), Positives = 152/419 (36%), Gaps = 102/419 (24%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G L DP+ GLAH+ EHM MG++ YP + ++L H G NA T+ T ++ EV
Sbjct: 52 GSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVE 111
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
D L +D + PL D +RE NAVN+E D R+ Q+ T +P H
Sbjct: 112 NDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHP 171
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
++F GN ETL P G V+ L FH K+YS+N+M I + L EL K A D
Sbjct: 172 GSKFSGGNLETLSDKP---GNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADT 228
Query: 214 FKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTT 273
F V NK PE T Q + P + L V
Sbjct: 229 FGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVE------------------ 270
Query: 274 PEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPEWTTHPYGKD 333
Sbjct: 270 ------------------------------------------------------------ 270
Query: 334 QLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSLLSELRRRGWC 393
F I + + +S D +++LIG+ PG+L L+++G
Sbjct: 271 --------------------FRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLV 310
Query: 394 NSLVGGPRSGAKG-FAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLEL 451
+ G ++ LT G+ + D +V +F Y+ L+ ++G + F EL
Sbjct: 311 EGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL 369
Score = 36.3 bits (83), Expect = 0.021
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 422 NHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNILRTK 467
+ + + + L QI+ +N LRT+
Sbjct: 730 STDSALAAVFVP----TGYDEYTSSAYSSLLGQIVQPWFYNQLRTE 771
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 108 bits (272), Expect = 1e-25
Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 28/226 (12%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLS----EHSGYSNAYTSADHTNYHFEV---SPDH 96
G AH + M + ++ + A TS D T Y + PD
Sbjct: 69 GFAHLLPRLALMSSASFTP-AQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDL 127
Query: 97 LEKTLDIFSKFFICPLFDASSTDREVNAVNSE---HEKNIPNDAWRLDQLEKATCDPKHD 153
L+ L S + + +N +NI WR K + HD
Sbjct: 128 LKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWR--YRLKGSSLIGHD 185
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
+ + + +L +F+ +WY+ + M L ++G +
Sbjct: 186 PGQ------PVTQPVD-------VEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKA 232
Query: 214 FKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIP 259
F ++K K + T + + +L + + P
Sbjct: 233 FSELKGKRTAPAAVATLA--PLPPEPVSLMNEQAAQDTLSLMWDTP 276
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 107 bits (270), Expect = 1e-25
Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 15/236 (6%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G + + G+AH EHM+F GT+ E++K ++ G NA+T+ D+T Y+ +V
Sbjct: 38 GSMDETTGTTGVAHALEHMMFKGTKDVGP-GEFSKRVAAMGGRDNAFTTRDYTAYYQQVP 96
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPND-AWRLDQLEKATCDPKH 152
L + + + + D +E+ + E + + + A H
Sbjct: 97 SSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAH 156
Query: 153 DYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVD 212
Y G ++ + ++ ++ +WY N + ++G + + + A
Sbjct: 157 PYRVPVIGWMNDIQNMT-------AQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQ 209
Query: 213 KFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDVR--SLLVTFPIPDLQEQHK 266
+ + + P Q R VT L + + +P + + K
Sbjct: 210 TYGKLARVEAPARKQQGEP---QQAGVR-RVTVKAPAELPYLALAWHVPAIVDLDK 261
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 98.0 bits (245), Expect = 2e-22
Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 15/206 (7%)
Query: 38 DPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHL 97
+ K+ G++HF EHM+F G E A N+ NA+TS + T Y+ V P+
Sbjct: 37 ETKEESGVSHFLEHMVFKGPEDMDAL-AVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFA 95
Query: 98 EKTLDIFSKFFICPLFDASSTDREVNAVNSE---HEKNIPNDAWRLDQLEKATCDPKHDY 154
L +F+K P E + E ++ P + +A H
Sbjct: 96 YDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDR-PGF--MAYEWARARFFQGHPL 151
Query: 155 NRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKF 214
G +E++ + R + +H + Y M LA G+ D L A
Sbjct: 152 GNSVLGTRESITALT-------REGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLT 204
Query: 215 KDVKNKNVSTPEWTTHPYGKDQLKTR 240
+ P + +
Sbjct: 205 EAWPEGEAERAYPPLTPAFGVEERPY 230
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 96.5 bits (241), Expect = 7e-22
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 15/205 (7%)
Query: 39 PKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLE 98
+ G++HF EHM F GT T A+ E +F G NA+TS ++T Y+ +V DH
Sbjct: 38 SAEENGISHFLEHMFFKGTNTRSAQ-EIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAG 96
Query: 99 KTLDIFSKFFICPLFDASSTDREVNAVNSE---HEKNIPNDAWRLDQLEKATCDPKHDYN 155
+ +D S F F ++E V E + P+D D L + KH
Sbjct: 97 QAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDT-PDD-IVHDLLS-SATYGKHSLG 153
Query: 156 RFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFK 215
G ETL + L + +++Y+ + + +++ G DEL + F
Sbjct: 154 YPILGTVETLNSFN-------EGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFS 205
Query: 216 DVKNKNVSTPEWTTHPYGKDQLKTR 240
VK + ++ +
Sbjct: 206 QVKPTTYNYQGEKPMFLPNRIVRKK 230
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 94.6 bits (236), Expect = 3e-21
Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 18/199 (9%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPA---ENEYNKFLSEHSGYSNAYTSADHTNYHF 90
G +P D G+A ++ GT + + EN L++ AD ++
Sbjct: 35 GSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGAEADRASFSL 94
Query: 91 EV--SPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSE--HEKNIPNDAWRLDQLEKA 146
V SP L I P F A +RE + + P L +
Sbjct: 95 RVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGS--ILGRRFTE 152
Query: 147 TCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDEL 206
KH Y + TL+ I R++L+ FH Y + + ++G + E
Sbjct: 153 LAYGKHPYGHVSS--VATLQKIS-------RDQLVSFHRTHYVARTAVVTLVGDITRAEA 203
Query: 207 EKYAVDKFKDVKNKNVSTP 225
E A D+ P
Sbjct: 204 ETIAQQLTADLPAGATLPP 222
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 89.2 bits (222), Expect = 2e-19
Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 26/213 (12%)
Query: 44 GLAHFCEHMLFMGTETYPA---ENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKT 100
G AHF EH+ F GT+ P E E + + NAYTS ++T Y+ + + + K
Sbjct: 48 GTAHFLEHLAFKGTQNRPQQGIELE----IENIGSHLNAYTSRENTVYYAKSLQEDIPKA 103
Query: 101 LDIFSKFFICPLFDASSTDREVNAVNSE---HEKNIPNDAWRLDQLEKATCDPKHD--YN 155
+DI S + D S+ +RE + + E +K ++ D L
Sbjct: 104 VDILSDILTKSVLDNSAIERERDVIIRESEEVDKM-YDE-VVFDHLH-EITYKDQPLGRT 160
Query: 156 RFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFK 215
G + +++I R +L + K Y + M LA G ++L +YA F
Sbjct: 161 ILGP--IKNIKSIT-------RTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFG 211
Query: 216 DVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKD 248
V P P G + RG ++
Sbjct: 212 HVPKSESPVPL--GSPRGPLPVFCRGERFIKEN 242
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 88.9 bits (221), Expect = 2e-19
Identities = 35/196 (17%), Positives = 59/196 (30%), Gaps = 15/196 (7%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEV- 92
G D + PG+A ML G + D
Sbjct: 45 GSSQDG-NAPGVALLTNAMLNEGVAGKDVG-AIAQGFEGLGADFGNGAYKDMAVASLRSL 102
Query: 93 -SPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSE--HEKNIPNDAWRLDQLEKATCD 149
+ D E L +F++ P F A S R N + + ++K P
Sbjct: 103 SAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPG--KLASLELMKRLY 160
Query: 150 PKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKY 209
H Y G+ +++ I +L FH K Y++ + +A++G S + E
Sbjct: 161 GTHPYAHASDGDAKSIPPIT-------LAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAI 213
Query: 210 AVDKFKDVKNKNVSTP 225
A +
Sbjct: 214 AAQVSAALPKGPALAK 229
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 88.5 bits (220), Expect = 4e-19
Identities = 28/208 (13%), Positives = 55/208 (26%), Gaps = 25/208 (12%)
Query: 44 GLAHFCEHMLFMGTETYPA---ENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKT 100
G H + + F TE L G +S ++ Y V + K
Sbjct: 46 GCTHILDRLAFKSTEHVEGRAMAET----LELLGGNYQCTSSRENLMYQASVFNQDVGKM 101
Query: 101 LDIFSKFFICPLFDASSTDREVNAVNSE---HEKNIPNDAWRLDQLEKATCDPKHD--YN 155
L + S+ P + + E P + L
Sbjct: 102 LQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMK-PELVL-PELLH-TAAYSGETLGSP 158
Query: 156 RFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFK 215
+ + +I + LL + NK+Y+ A +G ++ +
Sbjct: 159 LICP--RGLIPSIS-------KYYLLDYRNKFYTPENTVAAFVGVPH-EKALELTGKYLG 208
Query: 216 DVKNKNVSTPEWTTHPYGKDQLKTRGYV 243
D ++ + + G + V
Sbjct: 209 DWQSTHPPITKKVAQYTGGESCIPPAPV 236
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* ...
Length = 446
Score = 87.6 bits (218), Expect = 8e-19
Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 24/196 (12%)
Query: 44 GLAHFCEHMLFMGTETYPA---ENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKT 100
G +F EH+ F GT+ P E E + + NAY++ +HT Y+ + L K
Sbjct: 54 GAGYFVEHLAFKGTKNRPGNALEKE----VESMGAHLNAYSTREHTAYYIKALSKDLPKA 109
Query: 101 LDIFSKFFICPLFDASSTDREVNAVNSE---HEKNIPNDAWRLDQLEKATCDPKHD--YN 155
+++ + + S ++E + + E ++ + D + L AT +
Sbjct: 110 VELLADIVQNCSLEDSQIEKERDVILQELQENDTS-MRDVV-FNYLH-ATAFQGTPLAQS 166
Query: 156 RFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFK 215
G E + + R +L ++ ++ Y + M LA G +L A F
Sbjct: 167 VEGP--SENVRKLS-------RADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFS 217
Query: 216 DVKNKNVSTPEWTTHP 231
+ T P
Sbjct: 218 GLSGTYDEDAVPTLSP 233
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A*
2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Length = 431
Score = 85.4 bits (212), Expect = 4e-18
Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 27/200 (13%)
Query: 44 GLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDHLEKTLDI 103
G+++ +++ + A ++ S D +Y P +K+LD
Sbjct: 42 GVSNLWKNIFLSKENSAVAAK--------EGLALSSNISRDFQSYIVSSLPGSTDKSLDF 93
Query: 104 FSKFF---ICPLFDASSTDREVNAVNSE---HEKNIPNDAWRLDQLEKATCDPKHD--YN 155
++ F L +S+ + +V + E N + L+ L +T
Sbjct: 94 LNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPN-RVLEHLH-STAFQNTPLSLP 151
Query: 156 RFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFK 215
GT E+LE + +L F N + ++ + G ++L K
Sbjct: 152 TRGT--LESLENLV-------VADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNL 202
Query: 216 DVKNKNVSTPEWTTHPYGKD 235
++ + G +
Sbjct: 203 SLQTGTKPVLKKKAAFLGSE 222
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 78.5 bits (194), Expect = 4e-16
Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 26/206 (12%)
Query: 43 PGLAHFCEHMLFMGTETYPAENEYNKFLSEHS----GYSNAYTSADHTNYHFEVSPDHLE 98
G+AH F T T A L S G + ++ D L
Sbjct: 29 DGVAHLLNRFNFQNTNTRSALK-----LVRESELLGGTFKSTLDREYITLKATFLKDDLP 83
Query: 99 KTLDIFSKFFICPLFDASSTDREVNAV----NSEHEKNIPNDAWRLDQLEKATCDPKHDY 154
++ + F V + E+ P + DQL T +
Sbjct: 84 YYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQC-PVKS-AEDQLYAIT------F 135
Query: 155 NRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKF 214
+ G GN + + + + ++ F +K Y+ + ++ D
Sbjct: 136 RK-GLGNPLLYDGV---ERVS-LQDIKDFADKVYTKENLEVSGENVVEADLKRFVDESLL 190
Query: 215 KDVKNKNVSTPEWTTHPYGKDQLKTR 240
+ + + ++ + R
Sbjct: 191 STLPAGKSLVSKSEPKFFLGEENRVR 216
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B*
1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B*
2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* ...
Length = 439
Score = 78.4 bits (194), Expect = 7e-16
Identities = 25/214 (11%), Positives = 62/214 (28%), Gaps = 34/214 (15%)
Query: 39 PKDLPGLAHFCEHMLFMGTETYPA---ENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPD 95
+ G +H + T+ + + G + ++ ++ Y E D
Sbjct: 59 NSNNLGTSHLLRLASSLTTKGASSFKITRG----IEAVGGKLSVTSTRENMAYTVECLRD 114
Query: 96 HLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPN-DAWRLDQLEKATCDPKHDY 154
++ ++ P F + + + N A ++ L A
Sbjct: 115 DVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAA------- 167
Query: 155 NRFGT-------GNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELE 207
+ + + EL + ++S M L LG L+
Sbjct: 168 --YRNALANSLYCPDYRIGKVT-------PVELHDYVQNHFTSARMALIGLGVSH-PVLK 217
Query: 208 KYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRG 241
+ A ++F +++ + +G + + G
Sbjct: 218 QVA-EQFLNIRGGLGLSGA-KAKYHGGEIREQNG 249
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 78.0 bits (191), Expect = 2e-15
Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 30/221 (13%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSE-HSGYSNAYTSADHTNYHFEV 92
+ + PKD G+ H +H + G+ YP + + + L + NA+T D T Y
Sbjct: 64 VFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVAS 123
Query: 93 S------------------PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIP 134
+ P ++ + + L D S V +E +
Sbjct: 124 TNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYS 183
Query: 135 NDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMG 194
L ++ + P++ Y G+ + + + E +FH ++Y +
Sbjct: 184 QPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLT-------FEEFKEFHRQYYHPSNAR 236
Query: 195 LAILGK----ESLDELEKYAVDKFKDVKNKNVSTPEWTTHP 231
+ G L L +Y +
Sbjct: 237 IWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKFQKLFS 277
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus
faecalis V583, STR genomics, PSI-2, protein structure
initiative; 1.95A {Enterococcus faecalis}
Length = 425
Score = 76.6 bits (189), Expect = 3e-15
Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 34/230 (14%)
Query: 40 KDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYS-NAYTSADHTNY---------- 88
+ ++ + YP + + ++ L+E G S S +
Sbjct: 37 HETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVN 96
Query: 89 -HFEVSPDHLEKTLDIFSKFFICPL-----FDASSTDREVNAVNSE--HEKNIPND-AWR 139
H+ L + +D + P F+A + RE + + A
Sbjct: 97 DHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYA-- 154
Query: 140 LDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILG 199
L+ + D G L L ++ K + + + + +LG
Sbjct: 155 SLALQSVYFNQSEDQKIPSFGTVAALAEET-------AASLAAYYQKMLAEDQVDIFVLG 207
Query: 200 KESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDV 249
+ EL + + + Y + T + +
Sbjct: 208 DVNEAELVPLFKQLPFTPREEGKAAI-----FYNQPIRNVIEERTEREVL 252
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 74.7 bits (182), Expect = 3e-14
Identities = 34/280 (12%), Positives = 70/280 (25%), Gaps = 45/280 (16%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSE-HSGYSNAYTSADHTNYHFE- 91
+ G+ H EH + G++ Y +N + NAYT D T Y
Sbjct: 116 YVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGS 175
Query: 92 VSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHE--------------------- 130
++ + ++ P + E E E
Sbjct: 176 MNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVS 235
Query: 131 ---------KNIPNDAW-RLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNEL 180
K + L E P + + +G + I E
Sbjct: 236 FNGIVYNEMKGALSSPLEDLYHEEMKYMFPDNVH-SNNSGGDP--KEITNLT----YEEF 288
Query: 181 LKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTR 240
+F+ K Y+ + + K + EL + + + Y +
Sbjct: 289 KEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVESVEYQTYKKGPF 348
Query: 241 -----GYVTPVKDVRSLLVTFPIPDLQEQHKKNKNVTTPE 275
+ + V + + ++ + N +
Sbjct: 349 YIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNN 388
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 7e-08
Identities = 68/486 (13%), Positives = 131/486 (26%), Gaps = 152/486 (31%)
Query: 24 GYLSDPKDLPGYLSDPKDL-----PGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSN 78
+ P+ + L + L P +H + + + E + L Y N
Sbjct: 190 KNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YEN 245
Query: 79 AYTSADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREV-NAVNSEHEKNIPNDA 137
+ + ++ K + ++ ++V + +++ +I
Sbjct: 246 CLLVLLNVQ-----NAKAW-NAFNLSCKILL------TTRFKQVTDFLSAATTTHIS--- 290
Query: 138 WRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGI---DVRNELLKFHNKWYSSNIMG 194
LD E + K D+ E+L +N
Sbjct: 291 --LDHHSM------------TLTPDEVKSLLLKYLDCRPQDLPREVLT-------TNPRR 329
Query: 195 LAILGKE------SLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKD 248
L+I+ + + D + DK + ++ + L+ +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL------------NVLEP-------AE 370
Query: 249 VRSL---LVTFPIPDLQEQHKKNKNVTTPE------WTTHPYGKDQLKTRGYVTPVKDVR 299
R + L FP + P W + K +
Sbjct: 371 YRKMFDRLSVFP-----------PSAHIPTILLSLIWFDVIKSDVMVVV------NKLHK 413
Query: 300 SLLV-------TFPIPDLQ-EQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLL 351
LV T IP + E K +N E+ H RS++
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLEN----EYALH-------------------RSIV 450
Query: 352 VTFPIPDLQEQHKSGP---DNYLSHLIGHEGPGSLLSE---LRRRGWCNSLVGGPRSGAK 405
+ IP + P D Y IGH E L R + +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD----------- 499
Query: 406 GFAFFTVTVDLTLDGINHADDIVELLFQ---YIKLIHDQGPQEWIFLELFVQIIHEPCFN 462
F F + N + I+ L Q Y I D P+ + + + + N
Sbjct: 500 -FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 463 ILRTKF 468
++ +K+
Sbjct: 559 LICSKY 564
Score = 42.9 bits (100), Expect = 2e-04
Identities = 49/323 (15%), Positives = 95/323 (29%), Gaps = 65/323 (20%)
Query: 89 HFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATC 148
H +S D + TL +F + + V N + + ++
Sbjct: 53 HIIMSKDAVSGTLRLFW------TLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQR 103
Query: 149 DPKHDYNRFGTGNKETLETIPKSKGIDV-RNEL-LKFHNKWYS----SNIM--GLAILGK 200
P + +V R + LK N++ G+ GK
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 201 ESLDELEKYAVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPD 260
+ L+ K + + + W + ++ + + P+
Sbjct: 164 TWV-ALDVCLSYKVQCKMDFKIF---WLN--LKNCN-SPETVLEMLQKLLYQID----PN 212
Query: 261 LQEQHKKNKNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLV-----------TFPIPD 309
+ + N+ + + LK++ Y LLV F +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------ENCLLVLLNVQNAKAWNAF---N 263
Query: 310 LQEQ---HKKNKNVT---TPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTF---PIPDLQ 360
L + + K VT + TTH T +TP +V+SLL+ + DL
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTP-DEVKSLLLKYLDCRPQDLP 319
Query: 361 EQHKSGPDNYLSHLIG---HEGP 380
+ + LS +I +G
Sbjct: 320 REVLTTNPRRLS-IIAESIRDGL 341
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-06
Identities = 79/467 (16%), Positives = 129/467 (27%), Gaps = 181/467 (38%)
Query: 1 MSFLHDQDTMPSTWSPEAMQYKQGYLSDPKDLPGYLSDPKDLPG-----LAHFCEHMLFM 55
+ +L + P + YL LS P P LAH+ +
Sbjct: 216 LEWLENPSNTPD----------KDYL---------LSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 56 GTETYPAE-NEYNKFLSEHSG--YSNAYTSADHTNYHFEVSPDHLEKTLDIFSKFFI--- 109
G P E Y K + HS + + + F + K + + FFI
Sbjct: 257 GFT--PGELRSYLKGATGHSQGLVTAVAIAETDSWESFF---VSVRKAITVL--FFIGVR 309
Query: 110 CPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIP 169
C +E PN + LE + E E +P
Sbjct: 310 C------------------YE-AYPNTSLPPSILEDS---------------LENNEGVP 335
Query: 170 KSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKDVKNKNVSTPEWTT 229
S M L+I + ++++ Y V+K N P
Sbjct: 336 -------------------SP--M-LSISN-LTQEQVQDY-VNKT------NSHLPA-GK 364
Query: 230 HPY-----GKDQLKTRGYVT-PVKDVRSLLVTF---PIPDLQEQHK----KNK------- 269
G L V+ P + + L +T P +Q + + K
Sbjct: 365 QVEISLVNGAKNL----VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 270 -NVTTPEWTTH-PYGKDQLKTRGYVTP--VKDVRSLLVTFPIPDLQEQHKKNKNVTTPEW 325
V +P H L + KD+ V+F D+Q P +
Sbjct: 421 LPVASPF---HSHL----LVP---ASDLINKDLVKNNVSFNAKDIQ----------IPVY 460
Query: 326 TTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLI-----GHEGP 380
T G D G ++ + ++ P+ + + +H++ G G
Sbjct: 461 DTFD-GSDLRVLSGSISE--RIVDCIIRLPV-KWETTTQFKA----THILDFGPGGASGL 512
Query: 381 GSLLSELRRRGWCNSLVGGPRSGAKGFAFFTVTVDLTLDGINHADDI 427
G L + +V G TLD N DD
Sbjct: 513 GVLTHRNKDGTGVRVIVAG-----------------TLDI-NPDDDY 541
Score = 30.0 bits (67), Expect = 1.9
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 398 GGPRSGAKGFAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQGPQEWIFLELFVQIIH 457
GG + + + + +DG + I + + ++ + + + F Q
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ--- 1733
Query: 458 EP--------CFNILRTKFN 469
P F L++K
Sbjct: 1734 -PALTLMEKAAFEDLKSKGL 1752
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.2
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 14/30 (46%)
Query: 200 KESLDELE---K-YAVDKFKDVKNKNVSTP 225
K++L +L+ K YA D S P
Sbjct: 19 KQALKKLQASLKLYADD----------SAP 38
>3hkw_A NS5B RNA-dependent RNA polymerase; HCV polymerase,
1,5-benzodiazepine, transferase; HET: IX6; 1.55A
{Hepatitis c virus subtype 1A} PDB: 3qgi_A* 3qgh_A*
2xi3_A* 2xi2_A* 3e51_A* 3bsa_A* 3bsc_A* 3br9_A* 3co9_A*
3cvk_A* 3cwj_A* 3d28_A* 3d5m_A* 3cde_A* 3gyn_A* 3h2l_A*
3igv_A* 2ax0_A* 2awz_A* 2ax1_A* ...
Length = 581
Score = 28.9 bits (64), Expect = 4.1
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 176 VRNELLKFHNKWYSSNIMGLAI----LGKESLDELEKYAVDKFKDVKNK--NVSTPEWTT 229
+ N LL+ HN YS+ + + L L+ + D K+VK V +
Sbjct: 29 LSNSLLRHHNMVYSTTSRSACQRQKKVTFDRLQVLDSHYQDVLKEVKAAASKVKANLLS- 87
Query: 230 HPYGKDQLKTRGYVTP------VKDVRSLLVTFP--IPDLQEQHKKNKNVTTPE 275
+ T + KDVR I + + ++
Sbjct: 88 --VEEACSLTPPHSARSKFGYGAKDVRCHARKAVTHINSVWKDLLEDSVTPIDT 139
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 27.5 bits (62), Expect = 7.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 239 TRGYVTPVKD 248
+GYVTPVK+
Sbjct: 9 KKGYVTPVKN 18
Score = 27.5 bits (62), Expect = 7.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 288 TRGYVTPVKD 297
+GYVTPVK+
Sbjct: 9 KKGYVTPVKN 18
Score = 27.5 bits (62), Expect = 7.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 337 TRGYVTPVKD 346
+GYVTPVK+
Sbjct: 9 KKGYVTPVKN 18
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 27.5 bits (61), Expect = 7.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 239 TRGYVTPVKD 248
+G VT VKD
Sbjct: 9 KKGAVTSVKD 18
Score = 27.5 bits (61), Expect = 7.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 288 TRGYVTPVKD 297
+G VT VKD
Sbjct: 9 KKGAVTSVKD 18
Score = 27.5 bits (61), Expect = 7.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 337 TRGYVTPVKD 346
+G VT VKD
Sbjct: 9 KKGAVTSVKD 18
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 27.5 bits (62), Expect = 7.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 239 TRGYVTPVKD 248
+GYVTPVK+
Sbjct: 9 EKGYVTPVKN 18
Score = 27.5 bits (62), Expect = 7.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 288 TRGYVTPVKD 297
+GYVTPVK+
Sbjct: 9 EKGYVTPVKN 18
Score = 27.5 bits (62), Expect = 7.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 337 TRGYVTPVKD 346
+GYVTPVK+
Sbjct: 9 EKGYVTPVKN 18
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 27.5 bits (62), Expect = 7.7
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 239 TRGYVTPVKD 248
+G VT VK
Sbjct: 10 EKGCVTEVKY 19
Score = 27.5 bits (62), Expect = 7.7
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 288 TRGYVTPVKD 297
+G VT VK
Sbjct: 10 EKGCVTEVKY 19
Score = 27.5 bits (62), Expect = 7.7
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 337 TRGYVTPVKD 346
+G VT VK
Sbjct: 10 EKGCVTEVKY 19
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 27.5 bits (62), Expect = 8.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 239 TRGYVTPVKD 248
+RG VTPVKD
Sbjct: 15 SRGCVTPVKD 24
Score = 27.5 bits (62), Expect = 8.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 288 TRGYVTPVKD 297
+RG VTPVKD
Sbjct: 15 SRGCVTPVKD 24
Score = 27.5 bits (62), Expect = 8.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 337 TRGYVTPVKD 346
+RG VTPVKD
Sbjct: 15 SRGCVTPVKD 24
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 27.5 bits (62), Expect = 8.6
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 239 TRGYVTPVKD 248
+ G V +KD
Sbjct: 9 SSGAVVDIKD 18
Score = 27.5 bits (62), Expect = 8.6
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 288 TRGYVTPVKD 297
+ G V +KD
Sbjct: 9 SSGAVVDIKD 18
Score = 27.5 bits (62), Expect = 8.6
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 337 TRGYVTPVKD 346
+ G V +KD
Sbjct: 9 SSGAVVDIKD 18
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 27.5 bits (62), Expect = 9.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 239 TRGYVTPVKD 248
+G VT VKD
Sbjct: 10 KKGAVTSVKD 19
Score = 27.5 bits (62), Expect = 9.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 288 TRGYVTPVKD 297
+G VT VKD
Sbjct: 10 KKGAVTSVKD 19
Score = 27.5 bits (62), Expect = 9.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 337 TRGYVTPVKD 346
+G VT VKD
Sbjct: 10 KKGAVTSVKD 19
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 27.1 bits (61), Expect = 9.8
Identities = 3/10 (30%), Positives = 7/10 (70%)
Query: 239 TRGYVTPVKD 248
++G V +K+
Sbjct: 9 SKGAVNSIKN 18
Score = 27.1 bits (61), Expect = 9.8
Identities = 3/10 (30%), Positives = 7/10 (70%)
Query: 288 TRGYVTPVKD 297
++G V +K+
Sbjct: 9 SKGAVNSIKN 18
Score = 27.1 bits (61), Expect = 9.8
Identities = 3/10 (30%), Positives = 7/10 (70%)
Query: 337 TRGYVTPVKD 346
++G V +K+
Sbjct: 9 SKGAVNSIKN 18
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.419
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,294,747
Number of extensions: 427844
Number of successful extensions: 993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 953
Number of HSP's successfully gapped: 107
Length of query: 471
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 374
Effective length of database: 3,993,456
Effective search space: 1493552544
Effective search space used: 1493552544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)