RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15403
(471 letters)
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli
[TaxId: 562]}
Length = 240
Score = 130 bits (329), Expect = 7e-36
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 324 EWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGHEGPGSL 383
E T Q + P + L V F I + + +S D +++LIG+ PG+L
Sbjct: 1 EITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTL 60
Query: 384 LSELRRRGWCNSLVGGPRSGAKG-FAFFTVTVDLTLDGINHADDIVELLFQYIKLIHDQG 442
L+++G + G ++ LT G+ + D +V +F Y+ L+ ++G
Sbjct: 61 SDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKG 120
Query: 443 PQEWIFLEL 451
+ F EL
Sbjct: 121 IDKQYFDEL 129
Score = 38.8 bits (90), Expect = 8e-04
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 226 EWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKN 268
E T Q + P + L V F I + + +
Sbjct: 1 EITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSK 43
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 104 bits (259), Expect = 6e-26
Identities = 31/212 (14%), Positives = 66/212 (31%), Gaps = 26/212 (12%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSE-HSGYSNAYTSADHTNYHFEV 92
+ + PKD G+ H +H + G+ YP + + + L + NA+T D T Y
Sbjct: 50 VFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVAS 109
Query: 93 ------------------SPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIP 134
P ++ + + L D S V +E +
Sbjct: 110 TNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYS 169
Query: 135 NDAWRLDQLEKATCDPKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMG 194
L ++ + P++ Y G+ + + + E +FH ++Y +
Sbjct: 170 QPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLT-------FEEFKEFHRQYYHPSNAR 222
Query: 195 LAILGKESLDELEKYAVDKFKDVKNKNVSTPE 226
+ G + + + +
Sbjct: 223 IWFYGDDDPVHRLRVLSEYLDMFEASPSPNSS 254
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
562]}
Length = 240
Score = 91.4 bits (225), Expect = 2e-21
Identities = 71/192 (36%), Positives = 96/192 (50%), Gaps = 3/192 (1%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G L DP+ GLAH+ EHM MG++ YP + ++L H G NA T+ T ++ EV
Sbjct: 52 GSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVE 111
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
D L +D + PL D +RE NAVN+E D R+ Q+ T +P H
Sbjct: 112 NDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHP 171
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
++F GN ETL P + V+ L FH K+YS+N+M I + L EL K A D
Sbjct: 172 GSKFSGGNLETLSDKPGN---PVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADT 228
Query: 214 FKDVKNKNVSTP 225
F V NK P
Sbjct: 229 FGRVPNKESKKP 240
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 232
Score = 87.0 bits (214), Expect = 4e-20
Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 8/198 (4%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G + + G +F EH+ F GT+ P N K + + NAY++ +HT Y+ +
Sbjct: 43 GSRYESEKNNGAGYFVEHLAFKGTKNRP-GNALEKEVESMGAHLNAYSTREHTAYYIKAL 101
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
L K +++ + + S ++E + + E ++N + + AT
Sbjct: 102 SKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTP 161
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
+ G E + + R +L ++ ++ Y + M LA G +L A
Sbjct: 162 LAQSVEGPSENVRKLS-------RADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKH 214
Query: 214 FKDVKNKNVSTPEWTTHP 231
F + T P
Sbjct: 215 FSGLSGTYDEDAVPTLSP 232
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 80.9 bits (198), Expect = 4e-18
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 8/192 (4%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G ++ G AHF EH+ F GT+ P + + + NAYTS ++T Y+ +
Sbjct: 34 GSRAENVKNNGTAHFLEHLAFKGTQNRP-QQGIELEIENIGSHLNAYTSRENTVYYAKSL 92
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+ + K +DI S + D S+ +RE + + E E+ +
Sbjct: 93 QEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQP 152
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
R G + +++I R +L + K Y + M LA G ++L +YA
Sbjct: 153 LGRTILGPIKNIKSIT-------RTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKY 205
Query: 214 FKDVKNKNVSTP 225
F V P
Sbjct: 206 FGHVPKSESPVP 217
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 202
Score = 76.7 bits (187), Expect = 8e-17
Identities = 19/188 (10%), Positives = 43/188 (22%), Gaps = 12/188 (6%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G K G+AH F T T A + + G + ++
Sbjct: 22 GSRYATK--DGVAHLLNRFNFQNTNTRSAL-KLVRESELLGGTFKSTLDREYITLKATFL 78
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
D L ++ + F V + + + +
Sbjct: 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKG 138
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
+ +E + ++ F +K Y+ + ++ D
Sbjct: 139 LGNP--LLYDGVERVS-------LQDIKDFADKVYTKENLEVSGENVVEADLKRFVDESL 189
Query: 214 FKDVKNKN 221
+
Sbjct: 190 LSTLPAGK 197
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 70.4 bits (171), Expect = 1e-14
Identities = 29/197 (14%), Positives = 69/197 (35%), Gaps = 19/197 (9%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G ++ G+++ +++ E + ++ ++ S D +Y
Sbjct: 32 GAANENPYNNGVSNLWKNIFLS--------KENSAVAAKEGLALSSNISRDFQSYIVSSL 83
Query: 94 PDHLEKTLDIFSKFFICP---LFDASSTDREVNAVNSEHEKNIPNDAW-RLDQLEKATCD 149
P +K+LD ++ FI L +S+ + +V + + ND R+ + +T
Sbjct: 84 PGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAF 143
Query: 150 PKHDYNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKY 209
+ G E+LE + +L F N + ++ + G ++L
Sbjct: 144 QNTPLSLPTRGTLESLENLV-------VADLESFANNHFLNSNAVVVGTGNIKHEDLVNS 196
Query: 210 AVDKFKDVKNKNVSTPE 226
K ++ +
Sbjct: 197 IESKNLSLQTGTKPVLK 213
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 67.3 bits (163), Expect = 2e-13
Identities = 22/186 (11%), Positives = 58/186 (31%), Gaps = 11/186 (5%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G + + G +H + T+ + + + G + ++ ++ Y E
Sbjct: 38 GSRYENSNNLGTSHLLRLASSLTTKGAS-SFKITRGIEAVGGKLSVTSTRENMAYTVECL 96
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
D ++ ++ P F + + + N + + A ++
Sbjct: 97 RDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHA-AAYRNA 155
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
+ + EL + ++S M L LG L++ A ++
Sbjct: 156 LANSLYCPDYRIGKVT-------PVELHDYVQNHFTSARMALIGLGVSH-PVLKQVA-EQ 206
Query: 214 FKDVKN 219
F +++
Sbjct: 207 FLNIRG 212
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli
[TaxId: 562]}
Length = 229
Score = 62.7 bits (151), Expect = 8e-12
Identities = 16/187 (8%), Positives = 49/187 (26%), Gaps = 16/187 (8%)
Query: 37 SDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVSPDH 96
D + +++ + + + G S + + + +
Sbjct: 57 MDSARNQVMFALNDYLAGLALDQLSNQASVG-------GISFSTNANNGLMVNANGYTQR 109
Query: 97 LEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDYNR 156
L + + + ++ + N + A+ + ++R
Sbjct: 110 LPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSR 169
Query: 157 FGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDKFKD 216
++ L +I E+L + + S ++G + + A D K
Sbjct: 170 DER--RKILPSIT-------LKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQ 220
Query: 217 VKNKNVS 223
+
Sbjct: 221 LGADGSE 227
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 220
Score = 58.9 bits (141), Expect = 1e-10
Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 9/188 (4%)
Query: 34 GYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSADHTNYHFEVS 93
G + ++L G H + + F TE + L G +S ++ Y V
Sbjct: 36 GSRFEGRNLKGCTHILDRLAFKSTEHVE-GRAMAETLELLGGNYQCTSSRENLMYQASVF 94
Query: 94 PDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHD 153
+ K L + S+ P + + E ++ L +L
Sbjct: 95 NQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGET 154
Query: 154 YNRFGTGNKETLETIPKSKGIDVRNELLKFHNKWYSSNIMGLAILGKESLDELEKYAVDK 213
+ + +I + LL + NK+Y+ A +G ++ +
Sbjct: 155 LGSPLICPRGLIPSIS-------KYYLLDYRNKFYTPENTVAAFVGVPH-EKALELTGKY 206
Query: 214 FKDVKNKN 221
D ++ +
Sbjct: 207 LGDWQSTH 214
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 258
Score = 36.9 bits (85), Expect = 0.003
Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 24/211 (11%)
Query: 25 YLSDPKDLPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKFLSEHSGYSNAYTSAD 84
Y D+ L + LP + FC+ +L MGT+ + N+ + +G + Y
Sbjct: 37 YTEVVFDIGS-LKH-ELLPLVPLFCQSLLEMGTKDLTFV-QLNQLIGRKTGGISVYPLTS 93
Query: 85 HTNYHFEVSP----------DHLEKTLDIFSKFFICPLFDASSTDRE-VNAVNSEHEKNI 133
E + ++ + F ++ V+ + E +
Sbjct: 94 SVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRL 153
Query: 134 PNDAWRLDQLE-KATCDPKHDYN------RFGTGNKETLETIPKSKGIDVRNELLKFHNK 186
+ A + + + + + + + + L +
Sbjct: 154 RGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWE-GISSSLEEIRRS 212
Query: 187 WYSSNIMGLAILG-KESLDELEKYAVDKFKD 216
+ N + + +SL +EK +V KF D
Sbjct: 213 LLARNGCIVNMTADGKSLTNVEK-SVAKFLD 242
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 33.5 bits (76), Expect = 0.035
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 421 INHADD-IVELLFQYIKLIHDQGPQEWIFLELFVQIIHEPCFNILRTK 467
N D + + + L QI+ +N LRT+
Sbjct: 19 GNSTDSALAAVFVP----TGYDEYTSSAYSSLLGQIVQPWFYNQLRTE 62
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 382
Score = 32.0 bits (71), Expect = 0.14
Identities = 23/154 (14%), Positives = 40/154 (25%), Gaps = 1/154 (0%)
Query: 10 MPSTWSPEAMQYKQGYLSDPKDLPGYLSDPKDLPGLAHFCEHMLFMGTETYPAENEYNKF 69
P SP +Y + G K L H + + E+ F
Sbjct: 73 TPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPF 132
Query: 70 LSE-HSGYSNAYTSADHTNYHFEVSPDHLEKTLDIFSKFFICPLFDASSTDREVNAVNSE 128
+G S+ Y H + + F R + V +
Sbjct: 133 QDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATY 192
Query: 129 HEKNIPNDAWRLDQLEKATCDPKHDYNRFGTGNK 162
+ D WRLD + + ++ + K
Sbjct: 193 WIREFDIDGWRLDVANEIDHEFWREFRQEVKALK 226
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 106
Score = 28.6 bits (64), Expect = 0.61
Identities = 10/69 (14%), Positives = 28/69 (40%)
Query: 95 DHLEKTLDIFSKFFICPLFDASSTDREVNAVNSEHEKNIPNDAWRLDQLEKATCDPKHDY 154
+ +F ++ +++T E++ +E N+ + W L+ L++ + +
Sbjct: 13 KAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANP 72
Query: 155 NRFGTGNKE 163
+F E
Sbjct: 73 RKFNLDATE 81
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 236
Score = 29.3 bits (64), Expect = 0.93
Identities = 24/210 (11%), Positives = 43/210 (20%), Gaps = 12/210 (5%)
Query: 210 AVDKFKD-VKNKNVSTPEWTTHPYGKDQLKTRGY-------VTP--VKDVRSLLVTFPIP 259
AV KF+ + + NV PY K + VT V+ V+ ++
Sbjct: 15 AVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEH 74
Query: 260 DLQEQHKKNKNVTTPEWTTH--PYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKKN 317
+ + D Q
Sbjct: 75 KIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDY 134
Query: 318 KNVTTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVTFPIPDLQEQHKSGPDNYLSHLIGH 377
+ T + V + +
Sbjct: 135 IQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMG 194
Query: 378 EGPGSLLSELRRRGWCNSLVGGPRSGAKGF 407
PGS ++ + G+ +L G G
Sbjct: 195 GVPGSNTWQIFKWGYGPTLDGMFTQANYGI 224
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
[TaxId: 11103]}
Length = 530
Score = 28.6 bits (64), Expect = 1.6
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 176 VRNELLKFHNKWYSSNIMGLAI-LGKESLDELE---KYAVDKFKDVKNK--NVSTPEWTT 229
+ N LL+ HN Y++ + K + D L+ + D K++K K V +
Sbjct: 26 LSNSLLRHHNMVYATTSRSAGLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLSV 85
Query: 230 -----HPYGKDQLKTRGYVTPVKDVRSLLVTFP--IPDLQEQHKKNKNVTTPE 275
GY KDVR+L I + + ++
Sbjct: 86 EEACKLTPPHSAKSKFGYGA--KDVRNLSSKAVNHIHSVWKDLLEDTVTPIDT 136
>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum
pernix [TaxId: 56636]}
Length = 150
Score = 26.9 bits (59), Expect = 3.9
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 76 YSNAYTSADHTNYHFEVSPDHLEK 99
Y N E SP L +
Sbjct: 116 RKKVYGGGGRENALLEFSPRELVE 139
>d2saka_ d.15.5.1 (A:) Staphylokinase {Staphylococcus aureus [TaxId:
1280]}
Length = 121
Score = 26.4 bits (58), Expect = 4.4
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 16/75 (21%)
Query: 204 DELEKY--------AVDKFKDVKNKNVSTPEWTTHPYGKDQLKTRGYVTPVKDVRSLLVT 255
+++E Y A +F+ V+ + E T + K + +T+ + K
Sbjct: 43 EKIEYYVEWALDATAYKEFRVVELDPSAKIEVTYYDKNKKKEETKSFPITEK-------G 95
Query: 256 FPIPDLQEQHKKNKN 270
F +PDL +H KN
Sbjct: 96 FVVPDL-SEHIKNPG 109
>d1dbxa_ d.116.1.1 (A:) Hypothetical protein HI1434 (YbaK homologue)
{Haemophilus influenzae [TaxId: 727]}
Length = 157
Score = 25.7 bits (56), Expect = 8.2
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 76 YSNAYTSADHTNYHFEVSPDHLEKTLD 102
+ Y S E++P L K L
Sbjct: 122 FETIYVSGGKRGLSVEIAPQDLAKVLG 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.419
Gapped
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,820,670
Number of extensions: 86667
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 23
Length of query: 471
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,185,626
Effective search space: 452909132
Effective search space used: 452909132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)