Query psy15404
Match_columns 244
No_of_seqs 63 out of 65
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 20:09:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jad_A PLC-beta, phospholipase 90.4 2.7 9.1E-05 37.7 11.1 54 182-236 119-183 (251)
2 2l5g_A GPS2 protein, G protein 38.7 53 0.0018 21.8 4.4 28 187-214 9-36 (38)
3 3r2p_A Apolipoprotein A-I; amp 25.8 2.7E+02 0.0091 22.6 8.0 63 179-241 82-144 (185)
4 1vcs_A Vesicle transport throu 13.3 4.2E+02 0.014 19.7 5.8 33 113-145 51-83 (102)
5 1lyp_A CAP18; lipopolysacchari 12.5 2E+02 0.0069 18.0 3.0 23 22-44 4-26 (32)
6 2qyw_A Vesicle transport throu 11.2 5E+02 0.017 19.3 6.7 33 113-145 62-94 (102)
7 3onj_A T-snare VTI1; helix, HA 9.5 5.6E+02 0.019 18.8 6.4 33 113-145 47-81 (97)
8 1dul_A Signal recognition part 9.3 2E+02 0.0068 20.7 2.5 35 126-169 29-63 (69)
9 4h22_A Leucine-rich repeat fli 9.1 6E+02 0.021 19.8 5.4 40 199-238 15-56 (103)
10 1v63_A Nucleolar transcription 8.3 5.5E+02 0.019 18.7 4.8 44 198-241 33-80 (101)
No 1
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=90.39 E-value=2.7 Score=37.74 Aligned_cols=54 Identities=26% Similarity=0.232 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH-----------HHHHHHhhHHHHHHHHHHHHHHHH
Q psy15404 182 LKHQKQLEELKAQCETNIKELEQLQNEKRKM-----------LMEHENMKLKEQEEFYSKELKEWK 236 (244)
Q Consensus 182 ~Khe~ql~el~~q~eanirEL~QlQNEK~~~-----------LvEhEt~KLK~lDe~h~~elkeWr 236 (244)
..|..||..|.+.||.++.||...|.=|+.= ..|.|. .++++...|..++=+-+
T Consensus 119 e~Q~~QmK~Lk~~~ErE~KELkk~q~kks~e~i~e~~~ktK~K~e~Er-~~rEin~s~ike~veer 183 (251)
T 1jad_A 119 EKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQER-LKKEINNSHIQEVVQTI 183 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999988755432 122222 35667777776665444
No 2
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.75 E-value=53 Score=21.76 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhhHHHHHHhhHHHHHHHH
Q psy15404 187 QLEELKAQCETNIKELEQLQNEKRKMLM 214 (244)
Q Consensus 187 ql~el~~q~eanirEL~QlQNEK~~~Lv 214 (244)
-|.+.+.+...--..|.+|+|||-.|.+
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777889999999988765
No 3
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=25.80 E-value=2.7e+02 Score=22.59 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcCC
Q psy15404 179 RFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKEWKAQLKP 241 (244)
Q Consensus 179 ~q~~Khe~ql~el~~q~eanirEL~QlQNEK~~~LvEhEt~KLK~lDe~h~~elkeWre~L~p 241 (244)
....+-...|+++++.+.-.+.|+.+.-...-.-|=.+=+-=..++-+..+..+.+.+.+|.|
T Consensus 82 ~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p 144 (185)
T 3r2p_A 82 GLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSP 144 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555666777777777777777665544432222222222233333444444455555544
No 4
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=13.30 E-value=4.2e+02 Score=19.72 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHhHhhh
Q psy15404 113 EELTKKQTIEKRALPKRIRSEMKIREQMFRQSM 145 (244)
Q Consensus 113 EeLk~~q~~Ek~rLPK~qRsE~KtR~aMfKkSL 145 (244)
++|...=..|-+.+|-..|+...+|+--||..|
T Consensus 51 ~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL 83 (102)
T 1vcs_A 51 RELLEQMDLEVREIPPQSRGMYSNRMRSYKQEM 83 (102)
T ss_dssp HHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHH
Confidence 455555667888999999999999999999876
No 5
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=12.48 E-value=2e+02 Score=18.01 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy15404 22 RELKEFRESQKQEMRLLKQEVDL 44 (244)
Q Consensus 22 kel~~f~e~LK~~~Ke~K~ev~~ 44 (244)
+-|.+|++..|...+-+-+.+.-
T Consensus 4 krlrkfrnkikeklkkigqkiqg 26 (32)
T 1lyp_A 4 KRLRKFRNKIKEKLKKIGQKIQG 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999998888777643
No 6
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=11.20 E-value=5e+02 Score=19.35 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHhHhhh
Q psy15404 113 EELTKKQTIEKRALPKRIRSEMKIREQMFRQSM 145 (244)
Q Consensus 113 EeLk~~q~~Ek~rLPK~qRsE~KtR~aMfKkSL 145 (244)
++|...=..|-+.+|-..|+...+|+--||..|
T Consensus 62 ~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL 94 (102)
T 2qyw_A 62 NETLAEMEEELRYAPLTFRNPMMSKLRNYRKDL 94 (102)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 555666678889999999999999999999877
No 7
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=9.50 E-value=5.6e+02 Score=18.83 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhc--chhhhhhHHHHHHHhHhhh
Q psy15404 113 EELTKKQTIEKRAL--PKRIRSEMKIREQMFRQSM 145 (244)
Q Consensus 113 EeLk~~q~~Ek~rL--PK~qRsE~KtR~aMfKkSL 145 (244)
++|...=..|-..+ |-..|+...+|+--||..|
T Consensus 47 ~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl 81 (97)
T 3onj_A 47 FDLLDQMDVEVNNSIGDASERATYKAKLREWKKTI 81 (97)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 44555556778889 9999999999999999876
No 8
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=9.28 E-value=2e+02 Score=20.73 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=23.2
Q ss_pred cchhhhhhHHHHHHHhHhhhhccCCCCCChHHHHHHhHhhHHHH
Q psy15404 126 LPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETE 169 (244)
Q Consensus 126 LPK~qRsE~KtR~aMfKkSLrI~~~~~~~~~~~rekiKqF~~qE 169 (244)
=|+++..--+.|.| .|+| .+..+.+.-|++|..-.
T Consensus 29 nP~ii~~SR~~RIA--------~GSG-~~v~eVn~Llkqf~~m~ 63 (69)
T 1dul_A 29 KPEIIKGSRKRRIA--------AGSG-MQVQDVNRLLKQFDDMQ 63 (69)
T ss_dssp CGGGCCHHHHHHHH--------HHTT-CCHHHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHH--------ccCC-CCHHHHHHHHHHHHHHH
Confidence 49998754555544 3444 45556799999997654
No 9
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=9.05 E-value=6e+02 Score=19.81 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=27.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhh
Q psy15404 199 IKELEQLQNEKRKMLMEHENMK--LKEQEEFYSKELKEWKAQ 238 (244)
Q Consensus 199 irEL~QlQNEK~~~LvEhEt~K--LK~lDe~h~~elkeWre~ 238 (244)
|----||-|||--++-+-+|.| |-+++|.+++--++.+++
T Consensus 15 MVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK 56 (103)
T 4h22_A 15 MVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEK 56 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334678888888887777654 667778777777766654
No 10
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=8.32 E-value=5.5e+02 Score=18.75 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=34.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHhhcCC
Q psy15404 198 NIKELEQLQNEKRKMLMEHENMKLK----EQEEFYSKELKEWKAQLKP 241 (244)
Q Consensus 198 nirEL~QlQNEK~~~LvEhEt~KLK----~lDe~h~~elkeWre~L~p 241 (244)
++.|+--+=-+.-+.|-+.|.+.-. .+-+.|..++..|...+.|
T Consensus 33 ~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 33 PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 4567777777788888888876654 4556899999999999987
Done!