Query psy15404
Match_columns 244
No_of_seqs 63 out of 65
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 20:10:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15404.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15404hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 28.9 95 0.0069 22.2 10.3 97 132-241 44-140 (144)
2 d1v54l_ f.23.6.1 (L:) Mitochon 17.4 18 0.0013 23.3 0.7 12 84-95 34-45 (46)
3 d1vcsa1 a.47.2.1 (A:8-96) Vesi 11.3 2.2E+02 0.016 19.2 5.8 33 113-145 44-76 (89)
4 d1hsma_ a.21.1.1 (A:) High mob 9.4 1.1E+02 0.0083 19.5 3.0 45 198-242 29-77 (79)
5 d1lwma_ a.21.1.1 (A:) NHP6a {B 6.5 1.9E+02 0.013 19.1 3.1 44 197-240 46-93 (93)
6 d1v63a_ a.21.1.1 (A:) Nucleola 6.4 3.5E+02 0.025 17.6 4.8 45 198-242 33-81 (101)
7 d1v64a_ a.21.1.1 (A:) Nucleola 4.8 2.4E+02 0.018 18.9 2.9 44 198-241 40-87 (108)
8 d2epra1 g.37.1.1 (A:350-384) P 4.5 76 0.0056 18.9 -0.1 12 82-93 15-26 (35)
9 d1dzfa2 d.78.1.1 (A:144-215) E 4.2 95 0.0069 20.7 0.2 32 111-142 17-48 (72)
10 d1hmja_ d.78.1.1 (A:) RNA poly 4.2 1.5E+02 0.011 19.3 1.3 28 112-139 11-38 (68)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=28.87 E-value=95 Score=22.24 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=70.1
Q ss_pred hhHHHHHHHhHhhhhccCCCCCChHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHH
Q psy15404 132 SEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRK 211 (244)
Q Consensus 132 sE~KtR~aMfKkSLrI~~~~~~~~~~~rekiKqF~~qE~kRqk~E~~~q~~Khe~ql~el~~q~eanirEL~QlQNEK~~ 211 (244)
++....+..|..+|+-..+..++ ..+++|....+.=..+-.........+-+-.+.++++....++.++.+-=+.
T Consensus 44 ~e~~~~l~~~~~~l~~~l~p~~~--e~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p--- 118 (144)
T d1gs9a_ 44 DETMKELKAYKSELEEQLTPVAE--ETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLAS--- 118 (144)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 56677788889999877664333 3589888877777777777777777777777888888888888777653222
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhcCC
Q psy15404 212 MLMEHENMKLKEQEEFYSKELKEWKAQLKP 241 (244)
Q Consensus 212 ~LvEhEt~KLK~lDe~h~~elkeWre~L~p 241 (244)
-+.++...++..+.+-+.+|.|
T Consensus 119 --------~~eel~~~l~~~~eel~~kL~p 140 (144)
T d1gs9a_ 119 --------HLRKLRKRLLRDADDLQKRLAV 140 (144)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHhhC
Confidence 2346667788888888888877
No 2
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.40 E-value=18 Score=23.27 Aligned_cols=12 Identities=50% Similarity=0.874 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH
Q psy15404 84 DGFFLQRHQMLI 95 (244)
Q Consensus 84 dqffLQRhQll~ 95 (244)
--||.-|||||+
T Consensus 34 ~PF~ivRhqLlK 45 (46)
T d1v54l_ 34 APFFIVRHQLLK 45 (46)
T ss_dssp HHHHHHHHHHTT
T ss_pred chHHHHHHHHhc
Confidence 358889999986
No 3
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.28 E-value=2.2e+02 Score=19.19 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHhHhhh
Q psy15404 113 EELTKKQTIEKRALPKRIRSEMKIREQMFRQSM 145 (244)
Q Consensus 113 EeLk~~q~~Ek~rLPK~qRsE~KtR~aMfKkSL 145 (244)
++|...=-.|-..+|-..|+-.-+|+--||-.|
T Consensus 44 ~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl 76 (89)
T d1vcsa1 44 RELLEQMDLEVREIPPQSRGMYSNRMRSYKQEM 76 (89)
T ss_dssp HHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 455555567889999999999999999998665
No 4
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=9.38 E-value=1.1e+02 Score=19.47 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=28.6
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHhhcCCC
Q psy15404 198 NIKELEQLQNEKRKMLMEHENMKL----KEQEEFYSKELKEWKAQLKPR 242 (244)
Q Consensus 198 nirEL~QlQNEK~~~LvEhEt~KL----K~lDe~h~~elkeWre~L~pR 242 (244)
++.|+-.+=.+.=+-|-+.|...- ...-+.|..++.+|+.+++|-
T Consensus 29 ~~~ei~k~~~~~W~~ls~~eK~~y~~~a~~~k~~Y~~e~~~y~~k~~~~ 77 (79)
T d1hsma_ 29 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 77 (79)
T ss_dssp CTTTHHHHHHHHHHTSCSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHhhHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 445555555555555555554433 344567999999999998874
No 5
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.49 E-value=1.9e+02 Score=19.10 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=29.7
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHhhcC
Q psy15404 197 TNIKELEQLQNEKRKMLMEHENMKLK----EQEEFYSKELKEWKAQLK 240 (244)
Q Consensus 197 anirEL~QlQNEK~~~LvEhEt~KLK----~lDe~h~~elkeWre~L~ 240 (244)
....|+-..=.+.=+-|=+.|...-. ..-+.|..++.+|+++|.
T Consensus 46 ~~~~ei~k~l~~~W~~ls~~eK~~y~~~a~~~k~~y~~e~~~y~~~l~ 93 (93)
T d1lwma_ 46 ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93 (93)
T ss_dssp SCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34556666666666666666655443 345789999999999874
No 6
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.40 E-value=3.5e+02 Score=17.60 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=33.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHhhcCCC
Q psy15404 198 NIKELEQLQNEKRKMLMEHENMKLKEQ----EEFYSKELKEWKAQLKPR 242 (244)
Q Consensus 198 nirEL~QlQNEK~~~LvEhEt~KLK~l----De~h~~elkeWre~L~pR 242 (244)
+..|+-.+=.+.=+.|-+.|.+.-... -+.|..++.+|...+.|.
T Consensus 33 ~~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~~y~~e~~~y~~~~~~~ 81 (101)
T d1v63a_ 33 PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 355666666777777777777665443 567999999999999875
No 7
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.83 E-value=2.4e+02 Score=18.93 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=29.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHhhcCC
Q psy15404 198 NIKELEQLQNEKRKMLMEHENMKLK----EQEEFYSKELKEWKAQLKP 241 (244)
Q Consensus 198 nirEL~QlQNEK~~~LvEhEt~KLK----~lDe~h~~elkeWre~L~p 241 (244)
+..|+--+=.+.=+.|-+.|..... ..-+.|..++.+|...|.|
T Consensus 40 ~~~e~~k~ig~~W~~Ls~~eK~~Y~~~a~~~k~~Y~~~~~~y~~~~~~ 87 (108)
T d1v64a_ 40 PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPE 87 (108)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 3444444445556666666665543 4467899999999998875
No 8
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.46 E-value=76 Score=18.94 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHH
Q psy15404 82 LKDGFFLQRHQM 93 (244)
Q Consensus 82 lKdqffLQRhQl 93 (244)
+.|-|+|-||-|
T Consensus 15 frdvyhlnrhkl 26 (35)
T d2epra1 15 FRDVYHLNRHKL 26 (35)
T ss_dssp ESSHHHHHHHGG
T ss_pred HHHHHHHHhhhc
Confidence 468899999876
No 9
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.24 E-value=95 Score=20.65 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHhcchhhhhhHHHHHHHhH
Q psy15404 111 KIEELTKKQTIEKRALPKRIRSEMKIREQMFR 142 (244)
Q Consensus 111 ~~EeLk~~q~~Ek~rLPK~qRsE~KtR~aMfK 142 (244)
..+++..+....+.+||+|.+++.=+|--=|+
T Consensus 17 E~~~il~~y~i~~~qLP~I~~~DPva~~~g~~ 48 (72)
T d1dzfa2 17 EKRELLKRYRLKESQLPRIQRADPVALYLGLK 48 (72)
T ss_dssp HHHHHHHHTTCCGGGSCEECTTCHHHHHHTCC
T ss_pred HHHHHHHHhCCCHhHCCeecccCHhhhhcCCC
Confidence 34455555555678999999999877765444
No 10
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.22 E-value=1.5e+02 Score=19.34 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhcchhhhhhHHHHHH
Q psy15404 112 IEELTKKQTIEKRALPKRIRSEMKIREQ 139 (244)
Q Consensus 112 ~EeLk~~q~~Ek~rLPK~qRsE~KtR~a 139 (244)
.+++..+......+||+|.+++-=++--
T Consensus 11 ~~~ll~~y~i~~~qLP~I~~~DPva~~~ 38 (68)
T d1hmja_ 11 VEEILKRYNIKIQQLPKIYEDDPVIQEI 38 (68)
T ss_pred HHHHHHHhCCCHHHCCcccccCHHHHHh
Confidence 3445555555668999999999877754
Done!