RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15404
(244 letters)
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 53.9 bits (130), Expect = 3e-09
Identities = 77/145 (53%), Positives = 101/145 (69%), Gaps = 4/145 (2%)
Query: 74 RQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSE 133
+ Q K+QLKD FFL+R Q+L RH+KELEQL+R +R IE+L ++QT E R LPKRIR+E
Sbjct: 1 KHQLQKEQLKDRFFLERTQLLKRHEKELEQLERQQKRTIEKLEQRQTQELRRLPKRIRAE 60
Query: 134 MKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKA 193
K R +MF++S++I + E EKL +FQE EKKR +AE + E KHQKQ E A
Sbjct: 61 QKTRLKMFKESLKIEKKE---LKQEVEKLPRFQEQEKKRMKAEKEEQEQKHQKQEREFLA 117
Query: 194 QCETNIKE-LEQLQNEKRKMLMEHE 217
+ E N++E L+QLQNEKR L E E
Sbjct: 118 KQEENLEEALQQLQNEKRHELAETE 142
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 38.6 bits (89), Expect = 0.002
Identities = 34/225 (15%), Positives = 99/225 (44%), Gaps = 2/225 (0%)
Query: 2 EIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKL 61
E ++ E + A + ++++ ++ +E +++ + + ++ + K ++ K
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
Query: 62 ETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTI 121
+ EE ++ E + +L + + + + E ++K +K EE KK
Sbjct: 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK--AEEAKIKAEELKKAEEEKKKVEQ 1637
Query: 122 EKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFE 181
K+ + + ++++ ++ + + E +++ + + E ++ AE + E
Sbjct: 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
Query: 182 LKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEE 226
+ K+ EELK + K+ E+L+ + + ++ E K + +E+
Sbjct: 1698 AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Score = 29.3 bits (65), Expect = 2.1
Identities = 42/223 (18%), Positives = 98/223 (43%), Gaps = 1/223 (0%)
Query: 12 ASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERRQI 71
A K ++++ + + E K+ K E + +K+ K + ++L+ E ++
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE 1561
Query: 72 HERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIR 131
+++ K+ ++ + + E +++ + + EE K K+A +I+
Sbjct: 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
Query: 132 SEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEEL 191
+E + + ++ + + + + E+LKK +E K + AE + + +K+ EE
Sbjct: 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK-AAEEAKKAEEDKKKAEEA 1680
Query: 192 KAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKE 234
K E K E L+ E + E K + +E+ ++ELK+
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 29.3 bits (65), Expect = 2.4
Identities = 48/247 (19%), Positives = 112/247 (45%), Gaps = 5/247 (2%)
Query: 2 EIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKL 61
E +++AE + + + + E K+ E++K K + + + K + +K +
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD-EAKKAEEAKKADEAKKAEE 1532
Query: 62 ETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTK--KQ 119
+ +E ++ E+++ + + + + K+ E+ K M RK EE K +
Sbjct: 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
Query: 120 TIEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLK--KFQETEKKRYRAET 177
IE+ +MK E + +I + E E++K++ K +E E+K+ E
Sbjct: 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
Query: 178 QRFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKEWKA 237
++ E +++ + E + E + K+ E+ + + E +K + +E ++ELK+ +A
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
Query: 238 QLKPRKQ 244
+ K + +
Sbjct: 1713 EEKKKAE 1719
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 38.0 bits (89), Expect = 0.003
Identities = 29/111 (26%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Query: 14 KKIRSEQERELKEFR-ESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERRQIH 72
K+R+E ERELKE R E Q+ E RLL++E L DR+ ++E LE ++ +++
Sbjct: 61 HKLRAELERELKERRNELQRLERRLLQREETL---DRKMESLDKKEENLE---KKEKELS 114
Query: 73 ERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEK 123
++++ ++ + + +++ +ELE++ + Q + +E+ ++ E+
Sbjct: 115 NKEKNLDEKEE-----ELEELIAEQREELERISGLTQEEAKEILLEEVEEE 160
Score = 28.7 bits (65), Expect = 3.3
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 30/169 (17%)
Query: 68 RRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKR--MNQRKIEELTKKQTIEKRA 125
R++I E++ + ++L +++ KE E LK+ + + K E + +E+
Sbjct: 19 RKRIAEKKLGSAEELAK-------RIIEEAKKEAETLKKEALLEAKEEVHKLRAELEREL 71
Query: 126 LPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQ 185
K R+E++ E+ Q E L + E+ K+ ++ +
Sbjct: 72 --KERRNELQRLERRLLQ--------------REETLDRKMESLDKKEENLEKK-----E 110
Query: 186 KQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKE 234
K+L + + +ELE+L E+R+ L + +E +E +E++E
Sbjct: 111 KELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEE 159
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 37.8 bits (89), Expect = 0.004
Identities = 40/142 (28%), Positives = 78/142 (54%), Gaps = 19/142 (13%)
Query: 2 EIQQEAELRL--ASKKIRSEQERELKEFR-ESQKQEMRLLKQEVDLMPKDRRKSMFKDRK 58
I++EA L K+R+E E+EL+E R E QK E RLL++E +L DR+ + + R+
Sbjct: 53 AIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENL---DRKLELLEKRE 109
Query: 59 EKLETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMN-----QRKIE 113
E+LE ++ +++ ++QQ +K+ + + +++ +ELE++ + + +E
Sbjct: 110 EELE---KKEKELEQKQQELEKKEE-----ELEELIEEQLQELERISGLTAEEAKEILLE 161
Query: 114 ELTKKQTIEKRALPKRIRSEMK 135
++ ++ E L K I E K
Sbjct: 162 KVEEEARHEAAVLIKEIEEEAK 183
Score = 37.8 bits (89), Expect = 0.004
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 10 RLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERR 69
++A KI E E E K E K+E +K+E L K+ + + E E ERR
Sbjct: 27 KIAEAKI-KEAEEEAKRILEEAKKEAEAIKKEALLEAKEE----IHKLRNEFEKELRERR 81
Query: 70 QIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQT 120
++ + Q K+ ++ ++L + ++ELE+ ++ ++K +EL KK+
Sbjct: 82 NELQKLEKRLLQ-KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131
Score = 29.4 bits (67), Expect = 1.8
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 158 EREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHE 217
E KL+ E E + R E Q+ E + ++ E L + E K E+L+ +++++ + +
Sbjct: 65 EIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ 124
Query: 218 NMKLKEQE--EFYSKELKE 234
++ KE+E E ++L+E
Sbjct: 125 ELEKKEEELEELIEEQLQE 143
>gnl|CDD|129876 TIGR00794, kup, potassium uptake protein. Proteins of the KUP
family include the KUP (TrkD) protein of E. coli, a
partially sequenced ORF from Lactococcus lactis, high
affinity K+ uptake systems (Hak1) of the yeast
Debaryomyces occidentalis as well as the fungus,
Neurospora crassa, and several homologues in plants.
While the E. coli KUP protein is assumed to be a
secondary transporter, and uptake is blocked by
protonophores such as CCCP (but not arsenate), the
energy coupling mechanism has not been defined. However,
the N. crassa protein has been shown to be a K+:H+
symporter, establishing that the KUP family consists of
secondary carriers. The plant high affinity (20mM) K+
transporter can complement K+ uptake defects in E. coli
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 688
Score = 37.4 bits (87), Expect = 0.006
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 21/109 (19%)
Query: 132 SEMKIREQMFRQSMRISSSSTPDPEVE-----REKLKKFQETEKKRYRAETQRFELKHQK 186
S++ E M+R +R TP+ E + +F E E F L
Sbjct: 554 SQVGPTEGMYRCVIRYGFMDTPNEPKELAAHIVNSIVEFVEHECG--------FNLN--- 602
Query: 187 QLEELK-AQCETNIKELEQLQNEKRKM----LMEHENMKLKEQEEFYSK 230
LEEL +C I+E+ + E ++ M E++ LK++ K
Sbjct: 603 NLEELSDKRCRMPIEEIFENAMETKEHGYSYFMGEESLILKKRSPILRK 651
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 35.5 bits (82), Expect = 0.020
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 143 QSMRISSSST-PDPEVER---EKLKKFQETEKKRYRAETQRFELKHQ---------KQLE 189
QS+ I +ST P EVER E K E ++KR ++ +LK+Q KQL+
Sbjct: 492 QSITIQGASTLPKDEVERMVKEAEKNAAEDKEKR-----EKIDLKNQAESLCYQAEKQLK 546
Query: 190 ELKAQCETNIKE-LEQLQNEKRKMLMEHENMKLKEQEEFYSKELKE 234
ELK + KE +E L + R+ L +K E K L E
Sbjct: 547 ELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALME 592
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 35.1 bits (82), Expect = 0.032
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 24/82 (29%)
Query: 143 QSMRISSSST-PDPEVER---------EKLKKFQETEKKRYRAETQRFELKHQ--KQLEE 190
QS+ I++SS D E+ER E+ KK +E + R +A++ L +Q K L+E
Sbjct: 490 QSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADS----LIYQTEKTLKE 545
Query: 191 L--------KAQCETNIKELEQ 204
L K + E IKEL++
Sbjct: 546 LGDKVPADEKEKIEAAIKELKE 567
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 33.6 bits (78), Expect = 0.085
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 18 SEQERELKEFRESQKQEMRLLKQEVDLMPKD--RRKSMFKDRKEKLETEHEERRQ--IHE 73
E EREL++ E E L +E + + ++ +K ++ ++KL E E+ Q I E
Sbjct: 526 EELERELEQKAE----EAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKE 581
Query: 74 RQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKR 124
++ A + +K+ LQ+ EL + ++ + E+ KK+ +K
Sbjct: 582 AKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKE 632
Score = 29.8 bits (68), Expect = 1.5
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 160 EKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENM 219
EK +K QE E K + E + Q+ ++E K + + IKEL QLQ + HE
Sbjct: 555 EKKEKLQEEEDKLL----EEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHE-- 608
Query: 220 KLKEQEEFYSKELKEWKAQLKPRKQ 244
L E + +K ++ + + K +K+
Sbjct: 609 -LIEARKRLNKANEKKEKKKKKQKE 632
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 33.4 bits (76), Expect = 0.093
Identities = 38/228 (16%), Positives = 69/228 (30%), Gaps = 11/228 (4%)
Query: 13 SKKIRSEQERELKEF-RESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLE-TEHEERRQ 70
S K R R RE + + + V + ++ F+D+ E + +E Q
Sbjct: 140 SSKQRFFLRRTKTLLQRELEDRPETGVAGRVTVPHGSAKRRDFQDKLFSGEFVKRDEPDQ 199
Query: 71 ------IHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKR 124
R + L+ F +R D + E L R + +
Sbjct: 200 NSPDVKSDTRADESISDLEFEKFAKRRGSR---DVDPEDLYRSIMMLQGIHERIREKSSA 256
Query: 125 ALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKH 184
RS I+EQ+ R+ R K F + + R R E
Sbjct: 257 NSRSDERSSESIQEQVERRPSTSDIERNSQSLTRRYDDKSFDKAVRLRRSKTIDRAEACD 316
Query: 185 QKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKEL 232
++L+ K + + +K+ N+K ++ F
Sbjct: 317 LEELDRAKDFEKMTYDNWKAHHRKKKNFRPRGWNLKFRKASRFPKDSD 364
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 31.6 bits (72), Expect = 0.37
Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 21/198 (10%)
Query: 4 QQEAELRLASKKIRSEQERELKEFRESQKQ-EMRLLKQEVDLMPKDRRKSMFKDRKEKLE 62
E ++R + R++ E++LK E +L++ DL ++ + R LE
Sbjct: 49 ALEKKIRE-QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107
Query: 63 TEHEERRQIHERQQHAKKQ------LKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELT 116
+ E+R+ Q A ++ + Q +R L +I+ L
Sbjct: 108 VQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALK 167
Query: 117 KKQTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAE 176
+ + ++ + Q ++ KL + E E+K+ A+
Sbjct: 168 ATLKQLAAVRAEIAAEQAELTTLLSEQRA------------QQAKLAQLLE-ERKKTLAQ 214
Query: 177 TQRFELKHQKQLEELKAQ 194
QK+LEEL+A
Sbjct: 215 LNSELSADQKKLEELRAN 232
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 31.3 bits (71), Expect = 0.40
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 66 EERRQIHERQQHAKKQLKDGFFLQRH--QMLIRHDKELEQLKRMNQRKIEELTKKQTIEK 123
+E +Q+ E + K++L++ LQ + R K L+QL ++ L K T E
Sbjct: 11 KEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKK----LKKSLTPED 66
Query: 124 RALPKRIRSEMKIREQMFRQ 143
L +++ ++K R+ F
Sbjct: 67 SELVEQLEEQIKERKNQFFD 86
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 31.2 bits (71), Expect = 0.54
Identities = 39/258 (15%), Positives = 85/258 (32%), Gaps = 34/258 (13%)
Query: 1 AEIQQEAELRLASKKIRSEQERELKEFRESQKQEMR---LLKQEVDLMPKDR----RKSM 53
AE+ + L + + +EL++ + ++ ++ LL + +D + + R +
Sbjct: 23 AELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFI 82
Query: 54 FKDRKEKLE---TEHEERRQIHE------RQQHAKKQLKDGFFLQRHQMLIRHDKELEQL 104
+ EKLE EE + E + K + + + + L +ELE L
Sbjct: 83 LPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPL 142
Query: 105 KRMN-------QRKIE----ELTKKQTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTP 153
++ K L +++ +E + + ++ +
Sbjct: 143 AYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAED 202
Query: 154 DPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRKML 213
+V E E F+ + + EL+ ELE L++E +
Sbjct: 203 LDKV------SKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALA 256
Query: 214 MEHENMKLKEQEEFYSKE 231
+ +L E E
Sbjct: 257 EKIAE-ELLAVREILEIE 273
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 31.2 bits (71), Expect = 0.56
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 134 MKIREQMFRQSMRISSSS----TPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLE 189
M+ E+M R R+ + DP++ K K + E + ++ R Q +L
Sbjct: 841 MEAFEEMIRP-FRLHKTEKDREAKDPKMTWTKPWKITDAELQSNVRKSYR-----QVRLN 894
Query: 190 EL 191
EL
Sbjct: 895 EL 896
>gnl|CDD|216073 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.
Length = 420
Score = 30.6 bits (70), Expect = 0.75
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 153 PDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQ--------CETNIKELEQ 204
D EV REKL++ E + L ++ LEE +T + L +
Sbjct: 150 LDEEVLREKLEQLLEEKNAILEKLYGAEPLDVEEILEEYLEYAERLRPYITDT-SELLNR 208
Query: 205 LQNEKRKMLME 215
E +K+L E
Sbjct: 209 ALKEGKKVLFE 219
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 30.4 bits (69), Expect = 1.1
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 24/243 (9%)
Query: 4 QQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLET 63
Q EL +I +ER + E + E + + E + ++ ++L
Sbjct: 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
Query: 64 EHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTK---KQT 120
E + + + L+ +R R ++LE+ IE L +
Sbjct: 811 ELTLLNEEAANLRERLESLE-----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865
Query: 121 IEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRF 180
L + + + R + + S E ++ +E E KR +
Sbjct: 866 ELIEELESELEALLNERASLEEALALLRSE-------LEELSEELRELESKRSELRRELE 918
Query: 181 ELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSK---ELKEWKA 237
EL +++L +L+ + E LE + ++ L E ++ L+E E +K + +E +
Sbjct: 919 EL--REKLAQLELRLE----GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
Query: 238 QLK 240
+LK
Sbjct: 973 RLK 975
Score = 27.3 bits (61), Expect = 9.1
Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 14/211 (6%)
Query: 7 AELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHE 66
ELRL ++ E E KE + RL E R + + + E+LE + E
Sbjct: 270 EELRLEVSELEEEIEELQKELYALANEISRL---EQQKQILRERLANLERQLEELEAQLE 326
Query: 67 ERRQIHERQQHAKKQLKDGF--FLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKR 124
E + +L++ + + L +ELE + ++EEL ++ +
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
Query: 125 ALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRY----RAETQRF 180
+ + + ++ R R+ E RE+L++ E K+ E Q
Sbjct: 387 KVAQLELQIASLNNEIERLEARLERL-----EDRRERLQQEIEELLKKLEEAELKELQAE 441
Query: 181 ELKHQKQLEELKAQCETNIKELEQLQNEKRK 211
+ +++LEEL+ + E + LE+L+ E +
Sbjct: 442 LEELEEELEELQEELERLEEALEELREELEE 472
Score = 27.3 bits (61), Expect = 9.5
Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 18/238 (7%)
Query: 4 QQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLET 63
++ AEL A ++R E E +E + +K+ L +Q ++ L
Sbjct: 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQ-------------ISALRKDLAR 737
Query: 64 EHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEK 123
E Q+ ER K+L + + L +E E+ + +IEEL + K
Sbjct: 738 LEAEVEQLEERIAQLSKELTE--LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
Query: 124 RALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFEL- 182
L + ++R ++ + ++ +ER + E + E ++
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
Query: 183 KHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKEWKAQLK 240
++EEL+ E ELE L NE+ +E L+ + E S+EL+E +++
Sbjct: 856 SLAAEIEELEELIEELESELEALLNERAS--LEEALALLRSELEELSEELRELESKRS 911
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 29.5 bits (67), Expect = 1.7
Identities = 16/66 (24%), Positives = 40/66 (60%)
Query: 19 EQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERRQIHERQQHA 78
E+ +EL+E + ++E+ +K+ + +PK R + +++E+LE E + ++ E +
Sbjct: 334 EELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEEL 393
Query: 79 KKQLKD 84
+++LK+
Sbjct: 394 EEELKE 399
>gnl|CDD|235877 PRK06850, PRK06850, hypothetical protein; Provisional.
Length = 507
Score = 29.2 bits (66), Expect = 2.0
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 35 MRLLKQEVDLMPKDRRKSMFKDRKEKLETEH---EERRQIHERQQHAKKQLKDGFFLQRH 91
+LL E RR ++ ++ L+ + EE Q + K + G +
Sbjct: 434 RKLLDLERQYRGLSRRSGIYDKLEKILKQDWRSLEEIAQNAALLRKLKDAIHQGDIEKIE 493
Query: 92 QMLIRHDKELEQ 103
Q L K++++
Sbjct: 494 QELQELQKQIQK 505
>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase.
Length = 1378
Score = 29.4 bits (66), Expect = 2.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 183 KHQKQLEELKAQCETNIKELE 203
K KQ+EELK+QC +++ +E
Sbjct: 930 KTTKQVEELKSQCGQSLRSIE 950
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 29.4 bits (66), Expect = 2.3
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 156 EVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLME 215
+E+E +K + EK E + EL ++++EELK + ELE+ E K L +
Sbjct: 522 ALEKELEQKNEHLEKLLKEQEKLKKEL--EQEMEELKERERNKKLELEKEAQEALKALKK 579
Query: 216 ------HENMKLKEQEEFYSK 230
E + K + K
Sbjct: 580 EVESIIRELKEKKIHKAKEIK 600
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 29.3 bits (66), Expect = 2.3
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 135 KIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQ 194
+I ++ +++ ++ + + + + Q E +R R E QR E + ++ E+L A+
Sbjct: 37 RILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDAR 96
Query: 195 CETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKE 234
E + LE Q E+R+ + ++L+E E+ EL
Sbjct: 97 AEK-LDNLEN-QLEEREKALSARELELEELEKQLDNELYR 134
Score = 28.9 bits (65), Expect = 2.5
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 4 QQEAELRLASKKIRSEQERELKEFR-ESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLE 62
E + + R++Q +E + R E Q++E RL+++E L + + +++ E+ E
Sbjct: 52 AALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEERE 111
Query: 63 TEHEER-RQIHERQQHAKKQLKDGFFL----QRHQMLIRHDKELEQLKRMNQRKIEE 114
R ++ E ++ +L L R +L D ELE+ K +KIEE
Sbjct: 112 KALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEE 168
>gnl|CDD|213372 cd11745, Yos9_DD, C-terminal dimerization domain (DD) of
Saccharomyces cerevisiae Yos9 and related proteins.
Yos9 participates in the ER-associated protein
degradation pathway that targets misfolded proteins for
proteolysis. Yos9 is a component of the reductase
degradation (HRD) ubiquitin-ligase complex, specifically
part of the luminal submodule of the ligase. Yos9 scans
proteins for specific oligosaccharide modifications,
which are critical determinants of degradation signal.
It has been shown to be involved in the degradation of
glycosylated proteins and various nonglycosylated
proteins. Yos9 functions as a homodimer where this
domain is responsible for the self-association; it has
an alphabeta-roll domain architecture, and is found at
the C-terminus of the protein. The N-terminal portion of
Yos9 which includes an MRH domain is required for
binding to Hrd3p, another component of the HRD complex.
The DD domain does not appear to be directly binding
Hrd3p.
Length = 124
Score = 27.6 bits (62), Expect = 2.6
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 206 QNEKRKMLMEHENMKLKE-----QEEFYSK 230
N R LM N+ E +EE Y K
Sbjct: 19 SNNDRAKLMYTGNLNSDEEWDEVEEELYKK 48
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.9 bits (65), Expect = 2.7
Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 2/224 (0%)
Query: 4 QQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLET 63
+EAE + K E+ RE E + + E++ +E++ R+ + + E E
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321
Query: 64 EHEERRQIHERQQHAKKQLKDGFFLQRHQMLI-RHDKELEQLKRMNQRKIEELTKKQTIE 122
E + + ++ + L+ + L+ ++ E+L+ +EEL +
Sbjct: 322 EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL 381
Query: 123 KRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFEL 182
+ L + +IR ++ I S + +E ++ E + EL
Sbjct: 382 REELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTEL 441
Query: 183 KHQK-QLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQE 225
+ +LEEL+ Q E L++L+ E ++ E + ++ +
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSS 485
>gnl|CDD|223722 COG0649, NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7
[Energy production and conversion].
Length = 398
Score = 28.7 bits (65), Expect = 2.8
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 24 LKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERRQIHERQQHAKKQLK 83
++E R+S +R+++Q +D +PK K+ D K + E ++ E H K +
Sbjct: 269 MEEMRQS----IRIIEQCLDKLPKGPVKNE--DPKTTPPS-KERMKESMEALIHHFKLVT 321
Query: 84 DGF 86
+GF
Sbjct: 322 EGF 324
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 28.6 bits (64), Expect = 2.9
Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 12/147 (8%)
Query: 91 HQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQSMRISSS 150
+L+ +LK++N +K + + K+ E+ R+++
Sbjct: 2 QLLLLTQQIADRKLKKLN-----TADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKK 56
Query: 151 STPDPEVEREKLKKFQ------ETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQ 204
R + K+ + +++R A Q + +KQ +L
Sbjct: 57 LAEATASIRAQNKRQLDRFGLGDKQRERLDARLQ-IDRTFRKQQRDLNKAMTAKGLAGSD 115
Query: 205 LQNEKRKMLMEHENMKLKEQEEFYSKE 231
L E+ + N L E +Y+ E
Sbjct: 116 LYKEQLAAIKAALNEALAELHAYYAAE 142
Score = 27.1 bits (60), Expect = 9.2
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 1 AEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEK 60
+ Q+ R KK+ + E+ L+ + ++L K + RK++ + +K
Sbjct: 4 LLLTQQIADR-KLKKLNTADEKSLQSRSDEIIALIKLEKLLEEA----ERKAL--EALKK 56
Query: 61 LETEHEERRQIHERQQHA 78
L R ++RQ
Sbjct: 57 LAEATASIRAQNKRQLDR 74
Score = 27.1 bits (60), Expect = 9.6
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 7 AELRLASKKIRSEQERELKEFRESQKQEMRL-----LKQEVDLMPKDRRKSMFKDRKEKL 61
+L A+ IR++ +R+L F KQ RL + + +D K+M
Sbjct: 55 KKLAEATASIRAQNKRQLDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGS 114
Query: 62 ETEHEERRQIHERQQHAKKQLKDGF 86
+ E+ I A +L +
Sbjct: 115 DLYKEQLAAIKAALNEALAELHAYY 139
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 29.1 bits (65), Expect = 2.9
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 1 AEIQQEAELRLASKKIRSEQERELKEFRESQKQ-EMRLLKQEVDLMPKDRRKSMFKDRKE 59
+I E EL KK +E+ELK+ + +QK+ + +L Q+ +KS K RK
Sbjct: 10 KKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKR 69
Query: 60 KLETEHEE 67
+E E+ E
Sbjct: 70 DVEDENPE 77
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.4 bits (64), Expect = 3.1
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 141 FRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIK 200
+R ++ +P ++ + E E++ + T++ K +K+LEEL+ K
Sbjct: 287 YRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREK-EKRLEELEQNLIEERK 345
Query: 201 ELEQLQNEKRKMLMEHENMKLKEQ 224
EL E +K L + E K +
Sbjct: 346 ELNSKLEEIQKKLEDLEKRLEKLK 369
>gnl|CDD|233791 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 28.5 bits (64), Expect = 3.6
Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 97 HDKELEQLKRMNQRKIEEL-TKKQTIEKR--ALPKRIRSEMKIRE---QMFRQSMRISSS 150
+ L +L +++I EL + + +E R AL + IRE + + S + +
Sbjct: 69 DPERLAEL----RKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEP 124
Query: 151 STPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKR 210
E + F +E +R E + E + ++ K+L +LQNE
Sbjct: 125 DLK----EWFQAFDFNGSEIERLLTEDREAERRIREL-----------EKQLSELQNELN 169
Query: 211 KMLMEHENMKLK 222
+L
Sbjct: 170 ALLTGKSQRSHT 181
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.4 bits (64), Expect = 3.8
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 163 KKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLK 222
+ E E++ + +R EL+ + EL + + ++E+E+ + + +LK
Sbjct: 188 ELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLE--------ELK 239
Query: 223 EQEEFYSKELKEWKAQL 239
E + Y +EL L
Sbjct: 240 ELAKKYLEELLALYEYL 256
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97
family. This model family represents the major capsid
protein component of the heads (capsids) of
bacteriophage HK97, phi-105, P27, and related phage.
This model represents one of several analogous families
lacking detectable sequence similarity. The gene
encoding this component is typically located in an
operon encoding the small and large terminase subunits,
the portal protein and the prohead or maturation
protease [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 384
Score = 28.1 bits (63), Expect = 4.2
Identities = 12/64 (18%), Positives = 28/64 (43%)
Query: 21 ERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERRQIHERQQHAKK 80
+EL+E +E+R L ++ L + K+ + KE+++ E ++ E +
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 81 QLKD 84
+
Sbjct: 61 KPAA 64
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 28.1 bits (63), Expect = 4.6
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 154 DPEVEREKLKKFQETEKKRYRAETQRFE---------LKHQKQLEELKAQCETNIKELEQ 204
D ++ R +E+ K R + E K ++EEL+A+ K++ +
Sbjct: 3 DRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62
Query: 205 LQNEKRKMLMEH--ENMKLKEQEEFYSKELKEWKAQLK 240
+ +K+ + E E +LKE+ S LK +A+L+
Sbjct: 63 AKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQ 100
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 27.9 bits (62), Expect = 4.9
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 8/90 (8%)
Query: 134 MKIREQMFRQSMRISSSSTPDP-----EVEREKLKKFQETEKKRYRAETQRFELKHQKQL 188
M R S S P + K + + + + +L
Sbjct: 396 MGASALSPSGKPRHSGVSVPASTSAMTHSFDDNTSKHADPCAMGVKRMDEGILDERLGRL 455
Query: 189 EELKA---QCETNIKELEQLQNEKRKMLME 215
+ L IK + +K ++ME
Sbjct: 456 QALSEKLRTQHEEIKRCREALQKKESIVME 485
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 27.3 bits (61), Expect = 5.4
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 15/68 (22%)
Query: 157 VEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEH 216
+++EK+K+ Q+ K E Q+ E +AQ ++K+L++LQ ++ +M M+
Sbjct: 69 IDQEKMKELQKMMK-----EFQK---------EFREAQESGDMKKLKKLQEKQMEM-MDD 113
Query: 217 ENMKLKEQ 224
+ +K Q
Sbjct: 114 QRELMKMQ 121
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 27.8 bits (62), Expect = 5.6
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 19/110 (17%)
Query: 143 QSMRISSSSTPDP-EVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQ------- 194
QS+RI+++ E+ER + QE EK Y E +R +KQL ELK Q
Sbjct: 492 QSIRITNTGGLSSNEIERMR----QEAEK--YAEEDRR-----RKQLIELKNQADSLLYS 540
Query: 195 CETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKEWKAQLKPRKQ 244
E+ +KE +L +E+ K E + +L+ + L+E K QL+ +Q
Sbjct: 541 YESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQ 590
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 27.8 bits (62), Expect = 6.2
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 159 REKLKKFQETEKKRYRAETQRFELK-HQKQLEELKAQCETNIKELEQLQNEKRKMLMEHE 217
+ LK Q+ KKR + + +L+ ++K+LE +K + N EL++++ E K+ E +
Sbjct: 170 EKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGK 229
Query: 218 NMKLKEQEEF--YSKELKEWKAQLK 240
K K + + K+ KA L
Sbjct: 230 ADKQKIKSAKNDLQNDKKQLKADLA 254
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 27.9 bits (62), Expect = 6.3
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 142 RQSMRISSSST-PDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIK 200
+Q + I+ +ST P EVER QE EK + +R + + Q + + Q E +K
Sbjct: 528 KQDITITGASTLPKDEVER----MVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK 583
Query: 201 ELEQLQNEKRKMLMEHENMKLKE 223
EL K +E + +LK+
Sbjct: 584 ELGDKVPADVKEKVEAKLKELKD 606
>gnl|CDD|217536 pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase,
isoform II. Platelet-activating factor acetylhydrolase
(PAF-AH) is a subfamily of phospholipases A2,
responsible for inactivation of platelet-activating
factor through cleavage of an acetyl group. Three known
PAF-AHs are the brain heterotrimeric PAF-AH Ib, whose
catalytic beta and gamma subunits are aligned in
pfam02266, the extracellular, plasma PAF-AH (pPAF-AH),
and the intracellular PAF-AH isoform II (PAF-AH II).
This family aligns pPAF-AH and PAF-AH II, whose
similarity was previously noted.
Length = 372
Score = 27.8 bits (62), Expect = 6.3
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 38 LKQEVDLMPKDRRKSMFKDRKEKLETEHEERRQIHERQQHAKKQLK 83
K + ++ +D + E H Q+ +R Q K L
Sbjct: 146 FKDKNAAEVEEPSWIYLRDLNAEEEF-HIRNEQVGQRAQECSKALS 190
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 27.6 bits (62), Expect = 6.4
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 157 VEREKLKKFQETEKKRYRAETQRFELK---HQKQLEELKAQCETNIKEL-EQLQNEKRKM 212
+EK + + + + AE + K ++ +E + + ++K+L E+++ E+ K+
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKL 259
Query: 213 LMEHENM---KLKEQEEFYSKELKE 234
L E E M KL+EQEE + K
Sbjct: 260 LAEQERMLEHKLQEQEELLKEGFKT 284
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 27.9 bits (62), Expect = 6.6
Identities = 30/204 (14%), Positives = 79/204 (38%), Gaps = 12/204 (5%)
Query: 3 IQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRK-EKL 61
++ A++ ++ +E E+E + ++ +L++ EV+ P + ++ K
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILA 272
Query: 62 ETEHEERRQIHERQQHAKK---------QLKDGFFLQRHQMLIRHDKELEQLKRMNQRKI 112
ETE E E ++ A++ Q + Q Q + ++ + ++K
Sbjct: 273 ETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKE 332
Query: 113 EEL-TKKQTIEKRALPKRIRSEMK-IREQMFRQSMRISSSSTPDPEVEREKLKKFQETEK 170
EL ++++ A ++ + E K + ++ E E + +
Sbjct: 333 TELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVA 392
Query: 171 KRYRAETQRFELKHQKQLEELKAQ 194
AE ++ E+ + + + +A+
Sbjct: 393 AAEAAEQEQVEIAVRAEAAKAEAE 416
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 27.5 bits (61), Expect = 8.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 148 SSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEEL 191
+S P+ K K ++ R R E Q+ EL+ QK+ E L
Sbjct: 2 TSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELL 45
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 27.2 bits (61), Expect = 9.7
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 6 EAELRLASKKIRSEQERELKEFRE---SQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLE 62
EAELR +++ R E ER L + Q+ ++ K+ + + + + E L
Sbjct: 836 EAELRQLNRR-RVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLAD-ETLA 893
Query: 63 TEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEEL 115
EE R+ + + AK+ F+Q+H + + + + + + + E+L
Sbjct: 894 DRVEEIREQLDEAEEAKR------FVQQHGNALAQLEPIVSVLQSDPEQFEQL 940
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.126 0.326
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,488,740
Number of extensions: 1245227
Number of successful extensions: 4404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3345
Number of HSP's successfully gapped: 970
Length of query: 244
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 150
Effective length of database: 6,768,326
Effective search space: 1015248900
Effective search space used: 1015248900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.2 bits)