RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15404
(244 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 51.6 bits (124), Expect = 8e-08
Identities = 37/233 (15%), Positives = 81/233 (34%), Gaps = 15/233 (6%)
Query: 2 EIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKL 61
++ + ++ L K Q+ ++ R LK V L RR ++E
Sbjct: 853 LVRNKYQMMLREHKSIIIQKHVRGW--LARVHYHRTLKAIVYLQCCYRRM---MAKRELK 907
Query: 62 ETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTI 121
+ + E R ++ H + K ++ + K L + + T+K
Sbjct: 908 KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967
Query: 122 EKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFE 181
+ L ++ I+ + + EK + +K ++ E E
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 182 LKH-----QKQLEELKAQCETNIKELE-----QLQNEKRKMLMEHENMKLKEQ 224
LK + + EEL + KE+ +L E +++ ++ + +L+ Q
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 48.2 bits (115), Expect = 1e-06
Identities = 37/224 (16%), Positives = 86/224 (38%), Gaps = 8/224 (3%)
Query: 22 RELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERRQIHERQQHAKKQ 81
R + Q + + L R +E ++ + + H +
Sbjct: 827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT 886
Query: 82 LKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTI---EKRALPKRIRSEMKIRE 138
LK +LQ + +EL++LK + R +E K + L ++I + K +
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLK-IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945
Query: 139 QMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETN 198
+ + + + + + E R +++ + +E++ A + L Q+++ +L+ +
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL--QEEIAKLRKELHQT 1003
Query: 199 IKELEQLQNEKRKMLMEHENM--KLKEQEEFYSKELKEWKAQLK 240
E + ++ K E E + +LKEQ E +E ++
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047
Score = 33.9 bits (78), Expect = 0.051
Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 13/180 (7%)
Query: 70 QIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKR 129
Q + R A+ + ++ + + KR + + + + + +
Sbjct: 798 QRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNK 857
Query: 130 IRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQK--- 186
+ ++ + + Q + V + K + YR + ELK K
Sbjct: 858 YQMMLREHKSIIIQKHVRGWLA----RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEA 913
Query: 187 ----QLEELKAQCETNIKELEQLQNEKRKML--MEHENMKLKEQEEFYSKELKEWKAQLK 240
+ ++L E I +L++ +E+ K + + L+ +++L+ +L+
Sbjct: 914 RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR 973
Score = 27.8 bits (62), Expect = 3.9
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 1 AEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKE- 59
E + E K + ELKE K E L + + K+ ++M K E
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064
Query: 60 --KLETEHEERRQIHE 73
+LE + + R ++
Sbjct: 1065 TKQLELDLNDERLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 50.6 bits (121), Expect = 2e-07
Identities = 46/244 (18%), Positives = 95/244 (38%), Gaps = 8/244 (3%)
Query: 2 EIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMP-KDRRKSMFKDRKEK 60
+ + + E +R + ++++ + L ++ L K+ + + E
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 61 LETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQT 120
E R ++ ++Q ++ L + R + ++L+ K+ Q+++ +L ++
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHE--MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Query: 121 IEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRF 180
E+ A K K+ + M D + K +K E
Sbjct: 966 EEEAARQK--LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Query: 181 ELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKEWKAQLK 240
E K K L +LK + E+ I ELE ++ K E E +K K + E S +L E A+L+
Sbjct: 1024 EEK-AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE--SSDLHEQIAELQ 1080
Query: 241 PRKQ 244
+
Sbjct: 1081 AQIA 1084
Score = 47.9 bits (114), Expect = 1e-06
Identities = 43/244 (17%), Positives = 100/244 (40%), Gaps = 12/244 (4%)
Query: 1 AEIQQEAELRLASKKIRSEQER--ELKEFRESQKQEMRLLKQEVDLMPKDRRK--SMFKD 56
+ + E L +I E+ER +L+ ++ +Q+M L+++++ R+K
Sbjct: 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 57 RKEKLETEHEERRQIHERQQHAKKQLKD-----GFFLQRHQMLIRHDKELEQLKRMNQRK 111
K++ ++ + ++ K+ K K L +LK ++
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 112 IEELTKKQTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKK 171
I EL + E+++ + + + K+ + +I+ E++ + KK +E +
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100
Query: 172 RYRAETQRFEL-KHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSK 230
R E + + K++ EL++ ++LE + + K E + L E+ E
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK--AEKQKRDLSEELEALKT 1158
Query: 231 ELKE 234
EL++
Sbjct: 1159 ELED 1162
Score = 41.0 bits (96), Expect = 2e-04
Identities = 34/229 (14%), Positives = 82/229 (35%), Gaps = 7/229 (3%)
Query: 6 EAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEH 65
+ ++ +++ E+ K E + ++ K E D++ + + + ++ LE
Sbjct: 954 QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013
Query: 66 EERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRA 125
+ ++ K L + M+ + L++ ++ Q ++E++ +K E
Sbjct: 1014 SDLTTNLAEEEEKAKNLTK-LKNKHESMISELEVRLKKEEKSRQ-ELEKIKRKLEGESSD 1071
Query: 126 LPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQ 185
L ++I ++ Q + ++ + KK E+ +L Q
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL--Q 1129
Query: 186 KQLEELKAQCETNIKELEQLQ---NEKRKMLMEHENMKLKEQEEFYSKE 231
+ LE KA K+ L + L + + +QE S
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDY 1178
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 46.6 bits (111), Expect = 4e-06
Identities = 23/227 (10%), Positives = 60/227 (26%), Gaps = 22/227 (9%)
Query: 3 IQQEAELRLASKKIRSEQEREL----KEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRK 58
+Q KK + + + S + ++RL+K+E + P +
Sbjct: 801 VQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTW 860
Query: 59 EKLETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKK 118
LE +E + + +K++ + + + + + +
Sbjct: 861 SALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITA 920
Query: 119 QTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQ 178
+ + L + Q + L + + Y +
Sbjct: 921 VQAKLKNLEAFDGECQSLEGQS-----------------NSDLLSILAQLTELNYNGVPE 963
Query: 179 RFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQE 225
E K ++ + L E + L + E++
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELER-LQKIEDLHHHHHH 1009
Score = 31.9 bits (73), Expect = 0.20
Identities = 10/109 (9%), Positives = 26/109 (23%), Gaps = 1/109 (0%)
Query: 2 EIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPK-DRRKSMFKDRKEK 60
+ L S + + + + + E + +
Sbjct: 900 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 959
Query: 61 LETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQ 109
E ER+ QQ + + + +++E L +
Sbjct: 960 GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 34/261 (13%), Positives = 83/261 (31%), Gaps = 62/261 (23%)
Query: 9 LRLASKKIRSEQERELKEFRESQKQEM-RLLKQEVD-LMPKDRRK-----SMF-KDRK-- 58
L + ++ IR ++ ++ +++ ++ L P + RK S+F
Sbjct: 330 LSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 59 EKL------ETEHEERRQIHE---RQQHAKKQLKDG-FFLQRHQMLIRHDKELEQLKRMN 108
L + + + + +KQ K+ + + + +LE ++
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLELKVKLENEYALH 446
Query: 109 QRKIEELTKKQTIEKRALPKRI--------------RSEMKIREQMFR----------QS 144
+ ++ +T + L E R +FR Q
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 145 MRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELK---AQCETNI-- 199
+R S++ L++ K Y+ + K+++ + + + E N+
Sbjct: 507 IRHDSTAWNASGSILNTLQQL-----KFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 200 ---KELEQ--LQNEKRKMLME 215
+L + L E + E
Sbjct: 562 SKYTDLLRIALMAEDEAIFEE 582
Score = 36.8 bits (84), Expect = 0.006
Identities = 29/216 (13%), Positives = 68/216 (31%), Gaps = 34/216 (15%)
Query: 4 QQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLET 63
+ + S+QE +++F E +L+ + K+ +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEE------VLRINYKFL-MSPIKTEQRQPSMMTRM 111
Query: 64 EHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEEL--TKKQTI 121
E+R +++ Q K + + R Q ++ + L +L+ I+ + + K +
Sbjct: 112 YIEQRDRLYNDNQVFAK-----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 122 EKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFE 181
S K++ +M + ++ + PE E L Q+
Sbjct: 167 ALDVC----LSY-KVQCKMDFKIFWLNLKNCNSPETVLEML---------------QKLL 206
Query: 182 LKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHE 217
+ + +Q E R++L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 37.5 bits (86), Expect = 0.003
Identities = 27/235 (11%), Positives = 73/235 (31%), Gaps = 2/235 (0%)
Query: 12 ASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERRQI 71
AS + + R + D + + + L + + +
Sbjct: 584 ASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSV 643
Query: 72 HERQQHAKKQLKDGFFLQRHQMLIRHDKELE-QLKRMNQRKIEELTKKQTIEKRALPKRI 130
Q + L+ L + + + +R+ Q L +++ +++ K
Sbjct: 644 EPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKAR 703
Query: 131 RSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEE 190
+ +++ ++ + + E +++ + + +A+ E + + + +
Sbjct: 704 KELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVK 763
Query: 191 LKAQCETN-IKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKEWKAQLKPRKQ 244
+ E + +L+ K + L E K KE E A P Q
Sbjct: 764 KVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQ 818
Score = 27.5 bits (60), Expect = 5.0
Identities = 19/140 (13%), Positives = 47/140 (33%), Gaps = 8/140 (5%)
Query: 1 AEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEK 60
++QEA RL +KI + E E + + M + + K+ + R E
Sbjct: 678 QRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVES-----TGNAKAEAESRAEA 732
Query: 61 LETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQT 120
E E + + A + + ++ + EL + + ++ + +
Sbjct: 733 ARIEGEGSVLQAKLKAQALAIETEA---ELERVKKVREMELIYARAQLELEVSKAQQLAN 789
Query: 121 IEKRALPKRIRSEMKIREQM 140
+E + + + +
Sbjct: 790 VEAKKFKEMTEALGPGTIRD 809
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.45
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 9/39 (23%)
Query: 158 EREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCE 196
E++ LKK + K Y ++ L +KA E
Sbjct: 18 EKQALKKL-QASLKLYADDS-------APAL-AIKATME 47
Score = 26.1 bits (56), Expect = 7.5
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 22/41 (53%)
Query: 117 KKQTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTPD--P 155
+KQ + K++++ +K+ D P
Sbjct: 18 EKQAL------KKLQASLKLYA--------------DDSAP 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.49
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 36/136 (26%)
Query: 25 KEFRESQKQEMRLL------KQEV----DLMPKDRRKS----------MF--KD-RKEKL 61
+ F S ++ + +L E L P S M + +E++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 62 ETEHEERRQIHERQQHAKKQLKDGFFLQRH-------QMLIRHDKELEQLKR---MNQRK 111
+ + + + L +G ++ Q L + L + K ++Q +
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNG---AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 112 IEELTKKQTIEKRALP 127
I +K R LP
Sbjct: 407 IPFSERKLKFSNRFLP 422
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 30.2 bits (69), Expect = 0.56
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 154 DPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQ--------CETNIKELEQL 205
D + E+ K K Y E+ + +L++LK + E L
Sbjct: 190 DFDGFSERFKVLANQYKSIYPTL----EIDIEGELQKLKGYMEKIKPMVRDGVYFLYEAL 245
Query: 206 QNEKRKMLME 215
+K+L+E
Sbjct: 246 HGPPKKILVE 255
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 29.1 bits (65), Expect = 0.62
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 165 FQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRK 211
F E++R + E ++ LE++ ++ R+
Sbjct: 93 FVGREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNRR 139
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 29.8 bits (66), Expect = 0.78
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 134 MKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRY-----RAETQRFELKHQKQL 188
+ ++QM Q ++ D E + + ++ Q+ Y + + Q +Q
Sbjct: 11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVT 70
Query: 189 EELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELKEWKAQ 238
+ Q E + L+Q++ L + Q+ +EL +WK +
Sbjct: 71 RQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRR 120
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 29.8 bits (68), Expect = 0.80
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 11/69 (15%)
Query: 154 DPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCET-------NIKELEQLQ 206
+ E + K + Y E +K+L I +
Sbjct: 165 NFENFKNMYSKLIDHLMDLYNIT----EYDKEKELNLFYNYHIKLRDRIVDVISFMNTNL 220
Query: 207 NEKRKMLME 215
+K+L+E
Sbjct: 221 ENNKKVLIE 229
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 29.4 bits (66), Expect = 1.2
Identities = 26/268 (9%), Positives = 74/268 (27%), Gaps = 40/268 (14%)
Query: 1 AEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQ-------------------- 40
QE + S+ R + R ++ R +
Sbjct: 185 VVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAE 244
Query: 41 ----EVDLMPKDRRKSM--FKDRKEKLETEHEERRQIHERQQHAKKQLKDGFFLQRHQML 94
+ ++ + ++ + +E + + G +++ Q L
Sbjct: 245 LPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPL 304
Query: 95 IRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRS-EMKIREQM---------FRQS 144
L +++ ++E + +T+ + + +++ M
Sbjct: 305 AEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAG 364
Query: 145 MRISSSSTPDPEVEREKLKKFQETEKKRY---RAETQRFELKHQKQLEELKAQCETNIKE 201
+I ++ P+ EV E E +A FE + + A + +
Sbjct: 365 DKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLA-D 423
Query: 202 LEQLQNEKRKMLMEHENMKLKEQEEFYS 229
+++++ + + E Y
Sbjct: 424 GGKVKSDVYGRVEVDLVRNVVRVVESYD 451
Score = 27.4 bits (61), Expect = 6.1
Identities = 26/202 (12%), Positives = 63/202 (31%), Gaps = 8/202 (3%)
Query: 41 EVDLMPKDRRKSMFKDRKEKLETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHDKE 100
++ +P ++R+ + + +L +E + K ++ Q + +
Sbjct: 141 ILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLD 200
Query: 101 LEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIR-EQMFRQSMRISSSSTPDPEVER 159
L R +R E KK+ R + + ++ + E
Sbjct: 201 GVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEP-----YLFRAEE 255
Query: 160 EKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQN--EKRKMLMEHE 217
E + + +E E+ + + E L + + +E+ Q E + +L
Sbjct: 256 EGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPR 315
Query: 218 NMKLKEQEEFYSKELKEWKAQL 239
++ + E E L
Sbjct: 316 QVRAAQVEAEEEGETVYLTLFL 337
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 29.4 bits (65), Expect = 1.3
Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 137 REQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCE 196
+++ +R E E + L+ Q+ + + Q E + + + Q +
Sbjct: 3 KQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCK-TLQNREHETNGVAKSDQKQEQ 61
Query: 197 TNIKELEQLQNEKRKMLMEHENMKLKE----QEEFYSKELKEWKAQ 238
+K++ + + KRK ++ L Q + EL EWK +
Sbjct: 62 LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRR 107
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 29.1 bits (66), Expect = 1.3
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 18 SEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERRQIH 72
+ + LKE + K+++ LK+++ + K+ E L E RR +H
Sbjct: 2 ASKIAALKEKIAALKEKIAALKEKIK-----DTELGMKELNEILIKEETVRRTLH 51
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 2.0
Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 150 SSTPDPEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEK 209
+ E E ++K++E ++KR + + + +E + + + +++E Q Q+E+
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQEL----DAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 210 RKMLMEHENMKLKEQEEFYSKE 231
+ +++ + FY +
Sbjct: 131 ---VEKNKINNRIADKAFYQQP 149
Score = 28.2 bits (62), Expect = 2.2
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 3 IQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLE 62
I Q L + IR +E + K +E ++QE K + + + E++E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKV-MEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 63 TEHEERRQ 70
R
Sbjct: 133 KNKINNRI 140
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 28.3 bits (62), Expect = 2.7
Identities = 25/196 (12%), Positives = 62/196 (31%), Gaps = 5/196 (2%)
Query: 48 DRRKSMFKDRKEKLETEHEERRQIHERQQHAKKQLKDGFFLQRHQMLIRHD--KELEQLK 105
S R L ++ +++ + + Q + Q + D + +
Sbjct: 47 ANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIY 106
Query: 106 RMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKF 165
+ + + L Q + + M +++ +R E E + L+
Sbjct: 107 SCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDL 166
Query: 166 QETEKKRYRAETQRFELK---HQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLK 222
Q+ + + R + ++ + + L+ + E ++E N+
Sbjct: 167 QDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTEL 226
Query: 223 EQEEFYSKELKEWKAQ 238
Q + EL EWK +
Sbjct: 227 TQNALINDELVEWKRR 242
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 27.5 bits (61), Expect = 4.9
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 156 EVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLME 215
+ ++ ++K E E + H Q++EL N + + +LQ + +
Sbjct: 1 DSGQKTVQKILE-EVRILEQIGVS----HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55
Query: 216 HENM 219
Sbjct: 56 CSRP 59
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 26.8 bits (59), Expect = 5.6
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 164 KFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRK 211
F E+++ + + E ++ LE++ ++ R+
Sbjct: 119 WFVGQEQQQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNRR 166
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 26.8 bits (58), Expect = 7.0
Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 5/231 (2%)
Query: 1 AEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEK 60
I++ EL +++I E R L E + K+ P + +
Sbjct: 441 QLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTN 500
Query: 61 LETEHEERRQIHERQQHAKKQLKDGFFL---QRHQMLIRHDKELEQLKRMNQRKIEELTK 117
T ++ Q + + + +D L ++ + L
Sbjct: 501 FRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKS 560
Query: 118 KQTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAET 177
+ +R E ++ F + + ++ D + E L + Y T
Sbjct: 561 LLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAL--SVTELDRVYGGLT 618
Query: 178 QRFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFY 228
+ + +KQ LK ++ + + Q+ L E L + +
Sbjct: 619 TKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNF 669
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 27.0 bits (60), Expect = 7.7
Identities = 19/131 (14%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 92 QMLIRHDKE-LEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQSMRISSS 150
Q+ R E ++ + + ++++ K + E + L + S ++ ++ ++
Sbjct: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR--------AVLVAGG 983
Query: 151 STPD--PEVEREKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNE 208
+ ++ R++ + T++++ Q QLE+L Q + E E+
Sbjct: 984 VEAEKLDKLPRDRWLELGLTDEEK------------QNQLEQLAEQYDELKHEFEKKLEA 1031
Query: 209 KRKMLMEHENM 219
KR+ + + +++
Sbjct: 1032 KRRKITQGDDL 1042
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 26.8 bits (60), Expect = 9.0
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 21/69 (30%)
Query: 154 DPEVEREKLKKFQETEKKRYRAETQRFELK-----------------HQKQLEELKAQCE 196
D E R + +K K A +R + K + +L+E Q E
Sbjct: 797 DVEEWRRRQEK----RLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAE 852
Query: 197 TNIKELEQL 205
+ L Q+
Sbjct: 853 RIREALSQI 861
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 26.5 bits (59), Expect = 9.4
Identities = 17/141 (12%), Positives = 43/141 (30%)
Query: 100 ELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVER 159
+LE+ + Q K + L + + + K+ E + ++ + E+
Sbjct: 749 QLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 808
Query: 160 EKLKKFQETEKKRYRAETQRFELKHQKQLEELKAQCETNIKELEQLQNEKRKMLMEHENM 219
+ + Y + + L ++ I + + E +
Sbjct: 809 PPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRI 868
Query: 220 KLKEQEEFYSKELKEWKAQLK 240
+LK Q++ K + K
Sbjct: 869 ELKRQKKIAVLLQKYNRILKK 889
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.126 0.326
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,536,916
Number of extensions: 212745
Number of successful extensions: 1430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1158
Number of HSP's successfully gapped: 396
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.3 bits)