RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15404
         (244 letters)



>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small
           subunit N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 151

 Score = 28.8 bits (64), Expect = 0.38
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)

Query: 121 IEKRALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKF 165
           I+ R L + +R +             I +   PD  +  EK + F
Sbjct: 112 IDTRKLTRLLREKGAQN-------GCIIAGDNPDAALALEKARAF 149


>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 27.8 bits (61), Expect = 1.2
 Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 1/90 (1%)

Query: 69  RQIHERQQHAKKQLKDGF-FLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALP 127
            ++  +    ++QL++     +R   ++R          +           +  +K   P
Sbjct: 26  DKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITP 85

Query: 128 KRIRSEMKIREQMFRQSMRISSSSTPDPEV 157
             +++ +    Q      R        PE+
Sbjct: 86  DNVQNGVVFWNQYEDALNRAWQVYGVPPEI 115


>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
           {Methanococcus maripaludis [TaxId: 39152]}
          Length = 434

 Score = 26.8 bits (58), Expect = 2.4
 Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 98  DKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQM 140
            K +E+   +   +  +  +      R +P+    + KI+  +
Sbjct: 11  PKNMEKRGELVLNEYLKEIE-DVFNHRKIPENGIDDEKIKLFL 52


>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 284

 Score = 25.2 bits (55), Expect = 6.9
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 134 MKIREQ----MFRQSMRISSSSTPDPEVEREKLKKFQETEKKRYRAET--QRFELKHQKQ 187
           MK++ +    M  Q  RI   +T D ++ R  +    +   K Y               +
Sbjct: 1   MKVQYECLTCMANQCQRIVEMATQDMDIRRRAMILAAKLLAKEYNENAIPAIAGSLIFLE 60

Query: 188 LEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKE 223
           L +     +    E +    E  + + +    KLK 
Sbjct: 61  LYKF-LGNDDPFIEYKLKSEEMARKVADIIKRKLKL 95


>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 222

 Score = 24.9 bits (54), Expect = 8.3
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 185 QKQLEELKAQCETNIKELEQLQNEKRKMLMEHENMKLKEQEEFYSKELK 233
           Q +++ L  Q    I ++EQ  N+ R+   +  +  + +   F+     
Sbjct: 39  QNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFV 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.126    0.326 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 874,380
Number of extensions: 44008
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 130
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)