BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15407
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 117/185 (63%), Gaps = 16/185 (8%)
Query: 174 CPPKCTCTVRVLFYDGR------------AGECYIAVELFSSRIRVSYYVGNYPVSTMYR 221
CP +CTC V+ + E Y+ F+ V + NY T+
Sbjct: 4 CPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT---LVPKELSNYKHLTLI- 59
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLSNN+I LSN +FS +++L LILSYN+L+CI GLKSLR++SLHGNDIS++PE
Sbjct: 60 DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
GAF DL A++HLAIG NPLYCDC + WLS+WVK +Y EPGIARC P M DKLLLT P+
Sbjct: 120 GAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPS 179
Query: 342 SSFQC 346
F C
Sbjct: 180 KKFTC 184
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 132/265 (49%), Gaps = 76/265 (28%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CP+ C C+GT VDC+ RGLKEIP+DIPL+TTEL+LNDNE+G+I SDGLFGRLP+L+KL+L
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
+RNQ+TGIE NAFEG + + + GE I I
Sbjct: 62 KRNQLTGIEPNAFEGASH--------------------IQELQLGENKI------KEISN 95
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
++G + + T+ +L +NQI + +F L+ L+ L L+ N
Sbjct: 96 KMFLGLHQLKTL--NLYDNQISCVMPGSFEHLNSLTSLNLASN----------------- 136
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTE 327
P C+C LAW +EW+++ + G ARC
Sbjct: 137 -------------------------------PFNCNCHLAWFAEWLRKKSLNGGAARCGA 165
Query: 328 PASMRDKLLLTAPASSFQCKEKVSD 352
P+ +RD + P S F+C + S+
Sbjct: 166 PSKVRDVQIKDLPHSEFKCSSENSE 190
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 128/262 (48%), Gaps = 52/262 (19%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
ACP C C+GT VDCS + L +IP+ IP YT EL LN+NE +++ G+F +LP L K++
Sbjct: 4 ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKIN 63
Query: 147 LRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIR 206
N++T IE+ AFE G +G I
Sbjct: 64 FSNNKITDIEEGAFE---------------------------GASGVNEIL--------- 87
Query: 207 VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL 266
L++N++ + + F L L L+L N++ C+ D+ GL S+
Sbjct: 88 ----------------LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131
Query: 267 RIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCT 326
R++SL+ N I+ + GAF LH+++ L + NP C+C LAWL EW+++ + G RC
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQ 191
Query: 327 EPASMRDKLLLTAPASSFQCKE 348
+P +++ + F C +
Sbjct: 192 KPYFLKEIPIQDVAIQDFTCDD 213
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 142/315 (45%), Gaps = 48/315 (15%)
Query: 86 AACPSGCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD---------- 133
+CP+ CSC +RV C++R L E+P IP+ T L L +N I I++D
Sbjct: 4 TSCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 134 -------------GLFGRLPNLIKLDLRRNQVTGIEDNAFE--GENDQGCLGDN------ 172
G F LP+L L+L N++T + AFE + + L +N
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 173 -YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY------VGNYP-VSTMYR--- 221
Y + R+ + + E YI+ F + + Y + + P ++ + R
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLE-YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEE 182
Query: 222 -DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
+LS N++ + +F L+ L +L L + ++ I+R+A LKSL ++L N++ +P
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLP 242
Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGI--ARCTEPASMRDKLLLT 338
F LH + + + NP +C+C + WLS W+K ARC PA ++ + +
Sbjct: 243 HDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGE 302
Query: 339 APASSFQCKEKVSDE 353
S F C V E
Sbjct: 303 LDQSHFTCYAPVIVE 317
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 48/308 (15%)
Query: 86 AACPSGCSC--DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD---------- 133
+CP+ CSC +RV C++R L E+P IP+ T L L +N I I++D
Sbjct: 4 TSCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 134 -------------GLFGRLPNLIKLDLRRNQVTGIEDNAFE--GENDQGCLGDN------ 172
G F LP+L L+L N++T + AFE + + L +N
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 173 -YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY------VGNYP-VSTMYR--- 221
Y + R+ + + E YI+ F + + Y + + P ++ + R
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLE-YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEE 182
Query: 222 -DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
+LS N++ + +F L+ L +L L + ++ I+R+A LKSL ++L N++ +P
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLP 242
Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGI--ARCTEPASMRDKLLLT 338
F LH + + + NP +C+C + WLS W+K ARC PA ++ + +
Sbjct: 243 HDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGE 302
Query: 339 APASSFQC 346
S F C
Sbjct: 303 LDQSHFTC 310
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 132/308 (42%), Gaps = 50/308 (16%)
Query: 88 CPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
CPS CSC ++V C++RGL E+P+ IP T L L +N I I++D F L +L L
Sbjct: 46 CPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVL 104
Query: 146 DLRRNQVTGIEDNAFEGENDQGCLG--DNYCPP------KCTCTVRVLFYDGRAGEC--- 194
L RN + IE AF G L DN+ + +R L+ E
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164
Query: 195 ---------------------YIAVELFSSRIRVSYY------VGNYP-----VSTMYRD 222
YI+ F + Y + + P V +
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE 224
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
+S N + +F LS L +L + +++ I+R+A GL SL ++L N++S +P
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284
Query: 283 AFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIA---RCTEPASMRDKLLLTA 339
F L + L + NP CDC + WL+ W+ R+Y+ RC P MR + L+
Sbjct: 285 LFTPLRYLVELHLHHNPWNCDCDILWLAWWL-REYIPTNSTCCGRCHAPMHMRGRYLVEV 343
Query: 340 PASSFQCK 347
+SFQC
Sbjct: 344 DQASFQCS 351
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 397 IDACY--GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLI 454
+D C NPC ++G C + G F C+C GYTG RCEI++++C+S+ C+N+ATC+D I
Sbjct: 5 VDECSLGANPCEHAGKC-INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 455 QAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG 507
++C C PG++G C+ T CA +PC + RCLD + + CEC GF+G
Sbjct: 64 GEFQCICMPGYEGVHCEVNTDECAS--SPCLHNGRCLDKINEFQCECPTGFTG 114
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCEC 423
+PC + G C ++C+C GY G CE ++ C NPC+N TC L + G F C C
Sbjct: 13 NPCEHAGKCINTL-GSFECQCLQGYTGPRCEIDVNECVSNPCQNDATC-LDQIGEFQCIC 70
Query: 424 APGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
PGY G CE+N D+C S C +N C+D I ++C C GF G CQ
Sbjct: 71 MPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 435 NIDDCL--SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLD 492
++D+C ++ CE+ C++ + ++EC+C G+ G C+ C NPC+N A CLD
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATCLD 61
Query: 493 HFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
+ C C PG+ G C + G C+D IN++ C+C F G C++
Sbjct: 62 QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
N C +PC N C ++QC C PGY G HCE D C +PC ++G C L +
Sbjct: 46 NECVSNPCQNDATCLDQI-GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRC-LDKINE 103
Query: 419 FNCECAPGYTGDRCEINI 436
F CEC G+TG C++++
Sbjct: 104 FQCECPTGFTGHLCQVDL 121
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYT 536
C+ NPC + +C++ + C+C G++G + CQN TC+D I ++
Sbjct: 8 CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ 67
Query: 537 CKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
C C + G CE+ +SPC H NG C N++ C+C G++G
Sbjct: 68 CICMPGYEGVHCEVNTDECA----SSPCLH----NGRCLDK--INEFQCECPTGFTG 114
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N TC+D I ++ C C + G CE+ +SPC H NG C N++
Sbjct: 55 NDATCLDQIGEFQCICMPGYEGVHCEVNTDECA----SSPCLH----NGRCLDK--INEF 104
Query: 61 LCKCAPGYSG 70
C+C G++G
Sbjct: 105 QCECPTGFTG 114
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
+ G C++ + + C+C + G CEI + ++PCQ + C G ++
Sbjct: 17 HAGKCINTLGSFECQCLQGYTGPRCEIDVNECV----SNPCQ----NDATCLDQIG--EF 66
Query: 61 LCKCAPGYSGV 71
C C PGY GV
Sbjct: 67 QCICMPGYEGV 77
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEI 27
+ G C+D IN++ C+C F G C++
Sbjct: 93 HNGRCLDKINEFQCECPTGFTGHLCQV 119
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 397 IDACY--GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLI 454
+D C NPC ++G C + G F C+C GYTG RCEI++++C+S+ C+N+ATC+D I
Sbjct: 3 VDECSLGANPCEHAGKC-INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 455 QAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG 507
++C C PG++G C+ T CA +PC + RCLD + + CEC GF+G
Sbjct: 62 GEFQCICMPGYEGVHCEVNTDECAS--SPCLHNGRCLDKINEFQCECPTGFTG 112
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDC 439
++C+C GY G CE ++ C NPC+N TC L + G F C C PGY G CE+N D+C
Sbjct: 26 FECQCLQGYTGPRCEIDVNECVSNPCQNDATC-LDQIGEFQCICMPGYEGVHCEVNTDEC 84
Query: 440 LSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
S C +N C+D I ++C C GF G CQ
Sbjct: 85 ASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 435 NIDDCL--SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLD 492
++D+C ++ CE+ C++ + ++EC+C G+ G C+ C NPC+N A CLD
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATCLD 59
Query: 493 HFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
+ C C PG+ G C + G C+D IN++ C+C F G C+
Sbjct: 60 QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
N C +PC N C ++QC C PGY G HCE D C +PC ++G C L +
Sbjct: 44 NECVSNPCQNDATCLDQI-GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRC-LDKINE 101
Query: 419 FNCECAPGYTGDRCE 433
F CEC G+TG C+
Sbjct: 102 FQCECPTGFTGHLCQ 116
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYT 536
C+ NPC + +C++ + C+C G++G + CQN TC+D I ++
Sbjct: 6 CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ 65
Query: 537 CKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
C C + G CE+ +SPC H NG C N++ C+C G++G
Sbjct: 66 CICMPGYEGVHCEVNTDECA----SSPCLH----NGRCLDK--INEFQCECPTGFTG 112
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N TC+D I ++ C C + G CE+ +SPC H NG C N++
Sbjct: 53 NDATCLDQIGEFQCICMPGYEGVHCEVNTDECA----SSPCLH----NGRCLDK--INEF 102
Query: 61 LCKCAPGYSG 70
C+C G++G
Sbjct: 103 QCECPTGFTG 112
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
+ G C++ + + C+C + G CEI + ++PCQ+ + C G ++
Sbjct: 15 HAGKCINTLGSFECQCLQGYTGPRCEIDVNECV----SNPCQN----DATCLDQIG--EF 64
Query: 61 LCKCAPGYSGV 71
C C PGY GV
Sbjct: 65 QCICMPGYEGV 75
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 106/259 (40%), Gaps = 53/259 (20%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CP+ C+C VDC +GL EIP ++P TE+ L N I K+ G F L ++DL
Sbjct: 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDL 63
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
NQ++ + +AF+G L + Y + E + LF +
Sbjct: 64 SNNQISELAPDAFQGLRSLNSL---------------VLYGNKITE--LPKSLFEGLFSL 106
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
+ N N+I L F L L+ L L NKLQ I +
Sbjct: 107 QLLLLNA-----------NKINXLRVDAFQDLHNLNLLSLYDNKLQTIAK---------- 145
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTE 327
G F+ L AI + + NP CDC L WL++++ + +E ARCT
Sbjct: 146 --------------GTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTS 191
Query: 328 PASMRDKLLLTAPASSFQC 346
P + +K + + F+C
Sbjct: 192 PRRLANKRIGQIKSKKFRC 210
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 106/259 (40%), Gaps = 53/259 (20%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CP+ C+C VDC +GL EIP ++P TE+ L N I K+ G F L ++DL
Sbjct: 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDL 63
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
NQ++ + +AF+G L + Y + E + LF +
Sbjct: 64 SNNQISELAPDAFQGLRSLNSL---------------VLYGNKITE--LPKSLFEGLFSL 106
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
+ N N+I L F L L+ L L NKLQ I +
Sbjct: 107 QLLLLNA-----------NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---------- 145
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTE 327
G F+ L AI + + NP CDC L WL++++ + +E ARCT
Sbjct: 146 --------------GTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTS 191
Query: 328 PASMRDKLLLTAPASSFQC 346
P + +K + + F+C
Sbjct: 192 PRRLANKRIGQIKSKKFRC 210
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 57/238 (23%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CPS CSC GT V+C +G +P IP TT L L N + + +G+F L +L +L L
Sbjct: 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYL 59
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
N++ + + F
Sbjct: 60 GGNKLQSLPNGVF----------------------------------------------- 72
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
N S Y +LS NQ+ L N F L++L +L L+ N+LQ + L L+
Sbjct: 73 -----NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKRDYVEPGIAR 324
+ L+ N + +P+G F L ++ ++ + NP C C G+ +LSEW+ + G+ R
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK---HSGVVR 182
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 48/314 (15%)
Query: 87 ACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD----------- 133
CPS CSC ++V C ++ L+E+P I T L L++N+I IK +
Sbjct: 34 TCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEIL 93
Query: 134 ------------GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCT 181
G F L NL L+L N++T I + AF + L P + +
Sbjct: 94 QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153
Query: 182 --------VRVLFYDGRAGECYIAVELFSSRIRVSYY------VGNYP-----VSTMYRD 222
+R L YI+ F + Y + P + D
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELD 213
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
LS N + + +F L L +L + +++Q I+R+A L+SL I+L N+++++P
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273
Query: 283 AFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGI---ARCTEPASMRDKLLLTA 339
F LH + + + NP C+C + WLS W+K D ARC P +++ + +
Sbjct: 274 LFTPLHHLERIHLHHNPWNCNCDILWLSWWIK-DMAPSNTACCARCNTPPNLKGRYIGEL 332
Query: 340 PASSFQCKEKVSDE 353
+ F C V E
Sbjct: 333 DQNYFTCYAPVIVE 346
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 92/229 (40%), Gaps = 55/229 (24%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
AACPS CSC GT VDC + +P IP L L+DN+I K++ G+F L NL +L
Sbjct: 11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP-GVFDSLINLKEL 69
Query: 146 DLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI 205
L NQ+ + F+ L
Sbjct: 70 YLGSNQLGALPVGVFDSLTQLTVL------------------------------------ 93
Query: 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKS 265
DL NQ+ L + F L L +L + NKL + R + L
Sbjct: 94 ----------------DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTH 136
Query: 266 LRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV 313
L ++L N + IP GAF L ++TH + GNP C+C + +L WV
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 14/230 (6%)
Query: 92 CSCDGTR--VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRR 149
CSC+ + VDCS + L IP +IP T +L L N++ + S F RL L L L
Sbjct: 12 CSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKA-FHRLTKLRLLYLND 70
Query: 150 NQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSY 209
N++ + F+ + L + + + +D + EL R ++
Sbjct: 71 NKLQTLPAGIFKELKNLETL---WVTDNKLQALPIGVFD----QLVNLAELRLDRNQLKS 123
Query: 210 Y---VGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL 266
V + Y L N++ L F L+ L +L L N+L+ + A L L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Query: 267 RIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR 315
+ + L N + +PEGAF L + L + NP C C G+ ++++W+K+
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKK 233
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 32/230 (13%)
Query: 90 SGCSCDGTR--VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
+GC+C+ + VDC + L +P IP T +L L + + SD F L L L+L
Sbjct: 8 TGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATL-SDATFRGLTKLTWLNL 66
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
NQ+ + F+ + G LG + + + V +++
Sbjct: 67 DYNQLQTLSAGVFDDLTELGTLG---------------LANNQLASLPLGVFDHLTQLDK 111
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
Y GN Q+ L + F L+KL +L L+ N+LQ I A L +L+
Sbjct: 112 LYLGGN-------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD-CGLAWLSEWVKRD 316
+SL N + +P GAF L + + + GN C C + +LS+W++ +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 86 AACPSGCSCDGTRVDCSQRG---LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRL 139
A+ P G T++D G LK +P + T EL LN N++ I + G F +L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKL 154
Query: 140 PNLIKLDLRRNQVTGIEDNAFE 161
NL L L NQ+ + AF+
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFD 176
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 32/230 (13%)
Query: 90 SGCSCDGTR--VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
+GC+C+ + VDC + L +P IP T +L L + + SD F L L L+L
Sbjct: 8 TGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATL-SDATFRGLTKLTWLNL 66
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
NQ+ + F+ + G LG + + + V +++
Sbjct: 67 DYNQLQTLSAGVFDDLTELGTLG---------------LANNQLASLPLGVFDHLTQLDK 111
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
Y GN Q+ L + F L+KL +L L+ N+LQ I A L +L+
Sbjct: 112 LYLGGN-------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD-CGLAWLSEWVKRD 316
+SL N + +P GAF L + + + GN C C +LS+W++ +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIREN 208
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 86 AACPSGCSCDGTRVDCSQRG---LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRL 139
A+ P G T++D G LK +P + T EL LN N++ I + G F +L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKL 154
Query: 140 PNLIKLDLRRNQVTGIEDNAFE 161
NL L L NQ+ + AF+
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFD 176
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 111/283 (39%), Gaps = 27/283 (9%)
Query: 88 CPSGCSC---DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
CP C C C Q+GL+ +P IP + + L+ N I + + F NL
Sbjct: 1 CPGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAAS-FQSCRNLTI 59
Query: 145 LDLRRNQVTGIEDNAFEGEN--DQGCLGDNYCPPKCTCT-------VRVLFYDGRAGECY 195
L L N + GI+ AF G +Q L DN T + L D R G
Sbjct: 60 LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLD-RCGLQE 118
Query: 196 IAVELFSSRIRVSY-YVGNYPVSTM----YRDLSN--------NQIGFLSNFTFSPLSKL 242
+ LF + Y Y+ + + + +RDL N N+I + F L L
Sbjct: 119 LGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSL 178
Query: 243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302
+L+L N + + A L L + L N++SM+P L ++ +L + NP C
Sbjct: 179 DRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVC 238
Query: 303 DCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
DC L W+++ C P + + L AS +
Sbjct: 239 DCRARPLWAWLQKFRGSSSEVPCNLPQRLAGRDLKRLAASDLE 281
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 359 NACYKSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCEFMIDA------------CYGNPC 405
+ C +PC N G+C P L + + C C G+ +C +++ C NPC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 406 RNSGTCKLLEEGR------FNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYEC 459
N GTC++ E R + C+C G+ G C+ NI++C C+N C DL+ Y C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 460 RCAPGFQGEFCQTK 473
C F G CQ K
Sbjct: 121 ECPGEFMGRNCQYK 134
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 398 DACYGNPCRNSGTC-KLLEEGRFNCECAPGYTGDRC----EINIDD--------CLSHKC 444
D C NPC N G C L +G F+CEC G+T C E+ D+ C + C
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 445 ENNATCV-------DLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHY 497
N TC D Y C+C GF G CQ C E PC+NG C D ++Y
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINEC--EVEPCKNGGICTDLVANY 118
Query: 498 TCECTPGFSG 507
+CEC F G
Sbjct: 119 SCECPGEFMG 128
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 337 LTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQ------YQCRCTPGYHG 390
T P S + +E + C +PC N G CE + Y C+C G++G
Sbjct: 31 FTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG 90
Query: 391 QHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
HC+ I+ C PC+N G C L ++CEC + G C+
Sbjct: 91 IHCQHNINECEVEPCKNGGICTDL-VANYSCECPGEFMGRNCQ 132
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCE 26
NGG C D + +Y+C+C G+F+G+ C+
Sbjct: 107 NGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 522 CQNGGTCVDGIND--YTCKCEGDFVGKFCEIAPFVAMMYPQTS---PCQHHDCKNG---- 572
C+NGG C+ G+ D ++C+C F C VA + + PC + C NG
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 573 ICFQPQGSN--DYLCKCAPGYSG 593
I +G Y+CKC G++G
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNG 90
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 113/282 (40%), Gaps = 25/282 (8%)
Query: 88 CPSGCSC---DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
CP C C C Q+GL+ +P IP + + L+ N I + + F NL
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAAS-FRACRNLTI 60
Query: 145 LDLRRNQVTGIEDNAFEGEN--DQGCLGDN-----YCPPKCTCTVRV-LFYDGRAGECYI 196
L L N + I+ AF G +Q L DN P R+ + R G +
Sbjct: 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Query: 197 AVELFSSRIRVSY-YVGNYPVSTM----YRDLSN--------NQIGFLSNFTFSPLSKLS 243
LF + Y Y+ + + + +RDL N N+I + F L L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 244 QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD 303
+L+L N++ + A L L + L N++S +P A A L A+ +L + NP CD
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240
Query: 304 CGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
C L W+++ C+ P + + L A+ Q
Sbjct: 241 CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 113/282 (40%), Gaps = 25/282 (8%)
Query: 88 CPSGCSC---DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
CP C C C Q+GL+ +P IP + + L+ N I + + F NL
Sbjct: 1 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAAS-FRACRNLTI 59
Query: 145 LDLRRNQVTGIEDNAFEGEN--DQGCLGDN-----YCPPKCTCTVRV-LFYDGRAGECYI 196
L L N + I+ AF G +Q L DN P R+ + R G +
Sbjct: 60 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 119
Query: 197 AVELFSSRIRVSY-YVGNYPVSTM----YRDLSN--------NQIGFLSNFTFSPLSKLS 243
LF + Y Y+ + + + +RDL N N+I + F L L
Sbjct: 120 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 179
Query: 244 QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD 303
+L+L N++ + A L L + L N++S +P A A L A+ +L + NP CD
Sbjct: 180 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 239
Query: 304 CGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
C L W+++ C+ P + + L A+ Q
Sbjct: 240 CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 281
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
+ACPS CSC GT VDCS + L +P IP T L L DN+I K++ G+F RL L +L
Sbjct: 9 SACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEP-GVFDRLTQLTRL 67
Query: 146 DLRRNQVTGIEDNAFE--GENDQGCLGDN 172
DL NQ+T + F+ + Q L DN
Sbjct: 68 DLDNNQLTVLPAGVFDKLTQLTQLSLNDN 96
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
P +T L +NQI L F L++L++L L N+L + L L +SL+ N
Sbjct: 37 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 96
Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRD--------YVEPGIARC 325
+ IP GAF +L ++TH+ + NP C C + +LS W+ + ++P ARC
Sbjct: 97 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARC 156
Query: 326 T 326
+
Sbjct: 157 S 157
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
ACPS CSC GT VDCS + L +P IP T L L DN+I K++ G+F RL L +LD
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLD 60
Query: 147 LRRNQVTGIEDNAFE--GENDQGCLGDN 172
L NQ+T + F+ + Q L DN
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
P +T L +NQI L F L++L++L L N+L + L L +SL+ N
Sbjct: 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRD--------YVEPGIARC 325
+ IP GAF +L ++TH+ + NP C C + +LS W+ + ++P ARC
Sbjct: 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARC 148
Query: 326 T 326
+
Sbjct: 149 S 149
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
ACPS CSC GT VDCS + L +P IP T L L DN I K++ G+F RL L +LD
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEP-GVFDRLTQLTRLD 60
Query: 147 LRRNQVTGIEDNAFE 161
L NQ+T + F+
Sbjct: 61 LDNNQLTVLPAGVFD 75
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
CP +C+C+ G +C S + S G P +T L +N+I L
Sbjct: 3 CPSQCSCS-------GTTVDC-------SGKSLASVPTG-IPTTTQVLYLYDNRITKLEP 47
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
F L++L++L L N+L + L L +SL+ N + IP GAF +L ++TH+
Sbjct: 48 GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
Query: 294 AIGGNPLYCDCG-LAWLSEWVKR 315
+ NP C C + +LS W+ +
Sbjct: 108 WLLNNPWDCACSDILYLSRWISQ 130
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 79/241 (32%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CPS CSC GT + C+ +GL +P IP T L L N++ + G+F +L L KL L
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSL 59
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
+NQ+ + D F+ T + Y
Sbjct: 60 SQNQIQSLPDGVFDK-----------------LTKLTILY-------------------- 82
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
L N++ L N F L++L +L L N+L+
Sbjct: 83 ---------------LHENKLQSLPNGVFDKLTQLKELALDTNQLKS------------- 114
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARC 325
+P+G F L ++ + + NP C C + +LS W+ K E G A+C
Sbjct: 115 -----------VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 163
Query: 326 T 326
+
Sbjct: 164 S 164
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 124/299 (41%), Gaps = 63/299 (21%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
CP C C V CS GL+++PKD+P T L L +N+I +IK DG F L NL L
Sbjct: 24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLI 82
Query: 147 LRRNQVTGIEDNAFEG--ENDQGCLGDNYC---PPKCTCT-------------VRVLFYD 188
L N+++ I AF + ++ L N P K T VR ++
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 142
Query: 189 GRAGECYIAVEL--------------FSSRIRVSYY-VGNYPVSTMYR---------DLS 224
G I VEL F ++SY + + ++T+ + L
Sbjct: 143 GL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAF 284
N+I + + L+ L++L LS+N + +D +LA LR + L+ N + +P G
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGL 259
Query: 285 AD--------LHAITHLAIGGN----PLYCD-----CGLAWLSEWVKRDYVEPGIARCT 326
AD LH AIG N P Y G++ S V+ ++P RC
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 124/299 (41%), Gaps = 63/299 (21%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
CP C C V CS GL+++PKD+P T L L +N+I +IK DG F L NL L
Sbjct: 24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLI 82
Query: 147 LRRNQVTGIEDNAFEG--ENDQGCLGDNYC---PPKCTCT-------------VRVLFYD 188
L N+++ I AF + ++ L N P K T VR ++
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 142
Query: 189 GRAGECYIAVEL--------------FSSRIRVSYY-VGNYPVSTMYR---------DLS 224
G I VEL F ++SY + + ++T+ + L
Sbjct: 143 GL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAF 284
N+I + + L+ L++L LS+N + +D +LA LR + L+ N + +P G
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGL 259
Query: 285 AD--------LHAITHLAIGGN----PLYCD-----CGLAWLSEWVKRDYVEPGIARCT 326
AD LH AIG N P Y G++ S V+ ++P RC
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
Y +L++NQ+ L F L+ L++L LSYN+LQ + L L+ + L+ N + +
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 280 PEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKRDYVEPGIAR 324
P+G F L ++ ++ + NP C C G+ +LSEW+ + G+ R
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK---HSGVVR 239
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
Y L+ NQ+ L N F L+ L +L+L N+LQ + L +L ++L N + +
Sbjct: 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148
Query: 280 PEGAFADLHAITHLAIGGNPL 300
P+G F L +T L + N L
Sbjct: 149 PKGVFDKLTNLTELDLSYNQL 169
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
L+ L+ LIL+ N+LQ + L +L+ + L N + +P+G F L +T+L + N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 299 PL 300
L
Sbjct: 144 QL 145
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 97 TRVDCSQRGLKEIPK---DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
T ++ + L+ +PK D TEL L+ N++ + +G+F +L L L L +NQ+
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLK 194
Query: 154 GIEDNAFEGENDQGCLGDNYCPPKCTC 180
+ D F+ + + P CTC
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDNPWDCTC 221
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 34/236 (14%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
+CP+ C C + CS++ L +P+ +P YT L L+ N + +++++ RL NL L
Sbjct: 10 VSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSL 69
Query: 146 DLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI 205
L N + I AF + L + LF D +A E +
Sbjct: 70 LLSHNHLNFISSEAFVPVPNLRYL--DLSSNHLHTLDEFLFSDLQALEVLL--------- 118
Query: 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA---G 262
L NN I + F +++L +L LS N++ + +
Sbjct: 119 -----------------LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 263 LKSLRIISLHGNDISMIPEGAFADLHAITH--LAIGGNPLYCDCGLAWL-SEWVKR 315
L L ++ L N + +P L A L + NPL CDC L L S W R
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR 217
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 48/261 (18%)
Query: 114 PLYTTE-LILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI--EDNA-FEGEN----- 164
PL + E L+L DN I KI+ F + LDL N+V I ED F+G++
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186
Query: 165 ---------DQGCLGDNYC-PPKCTCTVRVLFYDGRAGECYIAVELF---------SSRI 205
++ LG C P ++ L G + +A F S +
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Query: 206 RVSYYVGNYPVSTMYRD------------------LSNNQIGFLSNFTFSPLSKLSQLIL 247
SY +G+ T ++D LS ++I L FS + L QL L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GL 306
+ N++ ID +A GL L+ ++L N + +P+G F L ++ + + NP C C +
Sbjct: 307 AQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 366
Query: 307 AWLSEWV-KRDYVEPGIARCT 326
+LS W+ K E G A+C+
Sbjct: 367 DYLSRWLNKNSQKEQGSAKCS 387
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLK 264
R + V P Y DLS N I L+ +FS L L L + + R + GL
Sbjct: 20 RGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79
Query: 265 SLRIISLHGNDISMIPEGAF---ADLHAIT 291
SL I+ L N + GAF A+L +T
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLT 109
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 90 SGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRR 149
S CS G C RGL ++P ++P + + L+ N I ++ F RL +L L + +
Sbjct: 6 SECSVIGYNAICINRGLHQVP-ELPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQ 63
Query: 150 NQVTG--IEDNAFEGENDQGCLGDNY 173
Q G I +N F G + L +Y
Sbjct: 64 -QTPGLVIRNNTFRGLSSLIILKLDY 88
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 54/290 (18%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
A CP GC C V CS GLK +PK+I TT L L +N+I +++ D G L +L L
Sbjct: 25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKG-LQHLYAL 83
Query: 146 DLRRNQVTGIEDNAFE--GENDQGCLGDNY---CPPKC-TCTVRVLFYDGRAGEC----- 194
L N+++ I + AF + + + N+ PP + V + +D R +
Sbjct: 84 VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVF 143
Query: 195 -------------------------YIAVELFSSRIRVSYYVG---NYPVSTMYRDLSNN 226
+ ++L RI + G + P + L +N
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN 203
Query: 227 QIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFAD 286
+I + SKL +L L +N+++ I+ +L+ L +LR + L N +S +P G D
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPD 262
Query: 287 LHAITHLAIGGNPL-------YCDCGLAWLSEWVKRDYVEPGIARCTEPA 329
L + + + N + +C G VKR Y GI+ P
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFG-----VKRAYYN-GISLFNNPV 306
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 119 ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC 178
+L L + I ++ L L LI L LR + I D +F+ L ++ P
Sbjct: 156 QLTLEKCNLTSIPTEAL-SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP--- 211
Query: 179 TCTVRVLFYDGRAGECYIAVELFSSRIR------VSYYVGNYPVSTMYRDLSNNQIGFLS 232
+ D C + L S I V Y + V + +LS N I +
Sbjct: 212 -------YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264
Query: 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITH 292
L +L ++ L +L ++ A GL LR++++ GN ++ + E F + +
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324
Query: 293 LAIGGNPLYCDCGLAWL 309
L + NPL CDC L W+
Sbjct: 325 LILDSNPLACDCRLLWV 341
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 37/213 (17%)
Query: 88 CPSGCSCDGT--RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
CP C C V C ++ +P+ IP T L L N I + D F P+L +L
Sbjct: 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDE-FASFPHLEEL 61
Query: 146 DLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI 205
+L N V+ +E AF + LG L S+R+
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLG-----------------------------LRSNRL 92
Query: 206 R---VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAG 262
+ + + G ++ + D+S N+I L ++ F L L L + N L I A +G
Sbjct: 93 KLIPLGVFTGLSNLTKL--DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 263 LKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
L SL ++L +++ IP A + LH + L +
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
CPP+C C+ + RA C+ R R P T DL N+I L+
Sbjct: 3 CPPRCECSAQ-----DRAVLCH--------RKRFVAVPEGIPTETRLLDLGKNRIKTLNQ 49
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
F+ L +L L+ N + ++ A L +LR + L N + +IP G F L +T L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 294 AIGGNPL 300
I N +
Sbjct: 110 DISENKI 116
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
AACPS CSC GT V+C +R L +P IP T L L N+I K++ G+F L L L
Sbjct: 11 AACPSQCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEP-GVFDSLTQLTYL 69
Query: 146 DLRRNQVTGIEDNAFE 161
+L NQ+T + F+
Sbjct: 70 NLAVNQLTALPVGVFD 85
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
CP +C+C+ G C R S G P +T L NQI L
Sbjct: 13 CPSQCSCS-------GTTVNC-------QERSLASVPAG-IPTTTQVLHLYINQITKLEP 57
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
F L++L+ L L+ N+L + L L ++LH N + IP G F +L ++TH+
Sbjct: 58 GVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHI 117
Query: 294 AIGGNPLYCDCG-LAWLSEWV 313
+ NP C+C + +L W+
Sbjct: 118 YLFNNPWDCECSDILYLKNWI 138
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
CP +C+C D C IR++ P L+NNQI L
Sbjct: 6 CPSQCSC-------DQTLVNC--------QNIRLASVPAGIPTDKQRLWLNNNQITKLEP 50
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
F L L QL + NKL I L L + L+ N + IP GAF +L ++TH+
Sbjct: 51 GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
Query: 294 AIGGNPLYCDC-GLAWLSEWV 313
+ NP C+C + +L WV
Sbjct: 111 YLYNNPWDCECRDIMYLRNWV 131
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
A CPS CSCD T V+C L +P IP L LN+N+I K++ G+F L NL +L
Sbjct: 4 AGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEP-GVFDHLVNLQQL 62
Query: 146 DLRRNQVTGIEDNAFE 161
N++T I F+
Sbjct: 63 YFNSNKLTAIPTGVFD 78
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
Y L +NQ+ L F L+ L++L L N+LQ + L L+ +SL+ N + +
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 280 PEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRD--------YVEPGIARCT 326
P+G F L ++TH+ + NP C C + +LS W+ + ++P ARC+
Sbjct: 197 PDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCS 252
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
Y L+ NQ+ L N F L+ L +L+L N+LQ + L +L + L+ N + +
Sbjct: 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSL 148
Query: 280 PEGAFADLHAITHLAIGGNPL 300
P+G F L +T L + N L
Sbjct: 149 PKGVFDKLTNLTRLDLDNNQL 169
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
L+ L+ LIL+ N+LQ + L +L+ + L N + +P+G F L +T+L + N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 299 PL 300
L
Sbjct: 144 QL 145
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEG--ENDQGCLGDN 172
G+F +L NL +LDL NQ+ + + F+ + Q L DN
Sbjct: 151 GVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+LS N +G + + F L KL L LSYN ++ + + GL +L+ ++L N + +P+
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 282 GAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCT 326
G F L ++ + + NP C C + +LS W+ K E G A+C+
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 435
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLK 264
R + V P Y DLS N I L+ +FS L L L + + R + GL
Sbjct: 20 RGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79
Query: 265 SLRIISLHGNDISMIPEGAF---ADLHAIT 291
SL I+ L N + GAF A+L +T
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLT 109
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 90 SGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRR 149
S CS G C RGL ++P ++P + + L+ N I ++ F RL +L L + +
Sbjct: 6 SECSVIGYNAICINRGLHQVP-ELPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQ 63
Query: 150 NQVTG--IEDNAFEGENDQGCLGDNY 173
Q G I +N F G + L +Y
Sbjct: 64 -QTPGLVIRNNTFRGLSSLIILKLDY 88
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 12/219 (5%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CPS CSC GT + C+ +GL +P IP T L L N++ + G+F +L L KL L
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-HGVFDKLTQLTKLSL 59
Query: 148 RRNQVTGIEDNAFEG---ENDQGCLGDNYCPPKCTCTVRVLF-YDGRAGECYIAVELFSS 203
N + +F+G ++D G Y + + + G ++ + +
Sbjct: 60 SSNGL------SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113
Query: 204 RIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ-CIDRDALAG 262
+ + V + +Y D+S+ N F+ LS L L ++ N Q D
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 263 LKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301
L++L + L + + AF L ++ L + N +
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 57/241 (23%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDN------------------------EIGKIKSD 133
V+C +R L +P D+P TT L L++N E+ K++ D
Sbjct: 14 EVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD 73
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
G LP L LDL NQ+ + P T+ L +
Sbjct: 74 G---TLPVLGTLDLSHNQLQSL--------------------PLLGQTLPALTVLDVSFN 110
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
++ L + R G + +Y L N++ L +P KL +L L+ N+L
Sbjct: 111 RLTSLPLGALR-------GLGELQELY--LKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV 313
+ L GL++L + L N + IP+G F H + + GNP C+C + + W+
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWL 220
Query: 314 K 314
+
Sbjct: 221 Q 221
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 57/241 (23%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDN------------------------EIGKIKSD 133
V+C +R L +P D+P TT L L++N E+ K++ D
Sbjct: 14 EVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD 73
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
G LP L LDL NQ+ + P T+ L +
Sbjct: 74 G---TLPVLGTLDLSHNQLQSL--------------------PLLGQTLPALTVLDVSFN 110
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
++ L + R G + +Y L N++ L +P KL +L L+ N+L
Sbjct: 111 RLTSLPLGALR-------GLGELQELY--LKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV 313
+ L GL++L + L N + IP+G F H + + GNP C+C + + W+
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWL 220
Query: 314 K 314
+
Sbjct: 221 Q 221
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + +IP ++P T L L+ N + + S F P L LDL R ++ IED A+
Sbjct: 15 CEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 73
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
+ + L P + F + + +AVE + + N+P+ +
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 125
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
++++N I F FS L+ L L LS NK+Q C D L
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 185
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
K +R+ ++L N + +P+G F L ++ + + NP C C +
Sbjct: 186 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 245
Query: 308 WLSEWV-KRDYVEPGIARCT 326
+LS W+ K E G A+C+
Sbjct: 246 YLSRWLNKNSQKEQGSAKCS 265
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 57/241 (23%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDN------------------------EIGKIKSD 133
V+C +R L +P D+P TT L L++N E+ K++ D
Sbjct: 14 EVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD 73
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
G LP L LDL NQ+ + P T+ L +
Sbjct: 74 G---TLPVLGTLDLSHNQLQSL--------------------PLLGQTLPALTVLDVSFN 110
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
++ L + R G + +Y L N++ L +P KL +L L+ N+L
Sbjct: 111 RLTSLPLGALR-------GLGELQELY--LKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV 313
+ L GL++L + L N + IP+G F H + + GNP C+C + + W+
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWL 220
Query: 314 K 314
+
Sbjct: 221 Q 221
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 57/241 (23%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDN------------------------EIGKIKSD 133
V+C +R L +P D+P TT L L++N E+ K++ D
Sbjct: 14 EVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD 73
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
G LP L LDL NQ+ + P T+ L +
Sbjct: 74 G---TLPVLGTLDLSHNQLQSL--------------------PLLGQTLPALTVLDVSFN 110
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
++ L + R G + +Y L N++ L +P KL +L L+ N+L
Sbjct: 111 RLTSLPLGALR-------GLGELQELY--LKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV 313
+ L GL++L + L N + IP+G F H + + GNP C+C + + W+
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWL 220
Query: 314 K 314
+
Sbjct: 221 Q 221
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + +IP ++P T L L+ N + + S F P L LDL R ++ IED A+
Sbjct: 16 CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 74
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
+ + L P + F + + +AVE + + N+P+ +
Sbjct: 75 QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 126
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
++++N I F FS L+ L L LS NK+Q C D L
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 186
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
K +R+ ++L N + +P+G F L ++ + + NP C C +
Sbjct: 187 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 246
Query: 308 WLSEWV-KRDYVEPGIARCT 326
+LS W+ K E G A+C+
Sbjct: 247 YLSRWLNKNSQKEQGSAKCS 266
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + +IP ++P T L L+ N + + S F P L LDL R ++ IED A+
Sbjct: 15 CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 73
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
+ + L P + F + + +AVE + + N+P+ +
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 125
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
++++N I F FS L+ L L LS NK+Q C D L
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 185
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
K +R+ ++L N + +P+G F L ++ + + NP C C +
Sbjct: 186 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 245
Query: 308 WLSEWV-KRDYVEPGIARCT 326
+LS W+ K E G A+C+
Sbjct: 246 YLSRWLNKNSQKEQGSAKCS 265
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + +IP ++P T L L+ N + + S F P L LDL R ++ IED A+
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 72
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
+ + L P + F + + +AVE + + N+P+ +
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 124
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
++++N I F FS L+ L L LS NK+Q C D L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
K +R+ ++L N + +P+G F L ++ + + NP C C +
Sbjct: 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244
Query: 308 WLSEWV-KRDYVEPGIARCT 326
+LS W+ K E G A+C+
Sbjct: 245 YLSRWLNKNSQKEQGSAKCS 264
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + +IP ++P T L L+ N + + S F P L LDL R ++ IED A+
Sbjct: 16 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 74
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
+ + L P + F + + +A+E + + N+P+ +
Sbjct: 75 QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVALETNLASLE------NFPIGHLK 126
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
++++N I F FS L+ L L LS NK+Q C D L
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 186
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
K +R+ ++L N + +P+G F L ++ + + NP C C +
Sbjct: 187 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 246
Query: 308 WLSEWV-KRDYVEPGIARCT 326
+LS W+ K E G A+C+
Sbjct: 247 YLSRWLNKNSQKEQGSAKCS 266
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 66/143 (46%), Gaps = 27/143 (18%)
Query: 366 CTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAP 425
C N G C ER+ C C G+HG HCE A C N G C + G C C P
Sbjct: 155 CRNGGFCN---ERRI-CECPDGFHGPHCE---KALCTPRCMNGGLC--VTPGF--CICPP 203
Query: 426 GYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ-TKTPFCAGEYNPC 484
G+ G C+ +C S C N TC +C C PG +GE C+ +K P PC
Sbjct: 204 GFYGVNCD--KANC-STTCFNGGTC---FYPGKCICPPGLEGEQCEISKCP------QPC 251
Query: 485 RNGARCLDHFSHYTCECTPGFSG 507
RNG +C+ C+C+ G+ G
Sbjct: 252 RNGGKCI---GKSKCKCSKGYQG 271
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNL 142
CP+ CSC GT VDC +RGL +P +P TTEL+L N + + G F LP L
Sbjct: 4 CPAPCSCAGTLVDCGRRGLTALPA-LPARTTELVLTGNNLTSVPP-GAFDHLPQL 56
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV--KRDYVEPGIARCTEP 328
L GN+++ +P GAF L + +G NP CDC L +L W+ + + RC P
Sbjct: 37 LTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYRDLRCVAP 96
Query: 329 ASMRDKLL 336
++R +LL
Sbjct: 97 PALRGRLL 104
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLSNN+I ++SN L L+L+ N + I+ D+ + L SL + L N +S +
Sbjct: 32 DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 91
Query: 282 GAFADLHAITHLAIGGNP 299
F L ++T L + GNP
Sbjct: 92 SWFKPLSSLTFLNLLGNP 109
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+L +L +S NKL + +L L L ++ + N + +P+G F L ++ + + NP
Sbjct: 452 QLKELYISRNKLMTLPDASL--LPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Query: 301 YCDC-GLAWLSEWV-KRDYVEPGIARCT 326
C C + +LS W+ K E G A+C+
Sbjct: 510 DCSCPRIDYLSRWLNKNSQKEQGSAKCS 537
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
L++N I + +FS L L L LSYN L + L SL ++L GN + E
Sbjct: 57 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 116
Query: 283 A-FADLHAITHLAIGGNPLYCD------CGLAWLSEWVKRDYVEPGIARCTEPASMR 332
+ F+ L + L +G + GL +L E ++ + EP S++
Sbjct: 117 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL----EIDASDLQSYEPKSLK 169
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLSNN+I ++SN L L+L+ N + I+ D+ + L SL + L N +S +
Sbjct: 58 DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117
Query: 282 GAFADLHAITHLAIGGNP 299
F L ++T L + GNP
Sbjct: 118 SWFKPLSSLTFLNLLGNP 135
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 231 LSNFTFSPLS--KLSQLI--LSYNKLQCIDRDALAGLKSLRIIS------LHGNDISMIP 280
L F FS LS + + LI ++ ++ D +K L IS N + +P
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293
Query: 281 EGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCT 326
+G F L ++ + + NP C C + +LS W+ K E G A+C+
Sbjct: 294 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 341
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
L++N I + +FS L L L LSYN L + L SL ++L GN + E
Sbjct: 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142
Query: 283 A-FADLHAITHLAIGGNPLYCD------CGLAWLSEWVKRDYVEPGIARCTEPASMR 332
+ F+ L + L +G + GL +L E ++ + EP S++
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL----EIDASDLQSYEPKSLK 195
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 229 GFLSNF---TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285
F NF F+ L L+ L LS +L+ + A L SL+++++ N + +P+G F
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
Query: 286 DLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCT 326
L ++ + + NP C C + +LS W+ K E G A+C+
Sbjct: 516 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 558
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 213 NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
N P ST DLS N + L +++F +L L LS ++Q I+ A L L + L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 273 GNDISMIPEGAFADLHAITHLA 294
GN I + GAF+ L ++ L
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLV 106
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 14/160 (8%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + +IP ++P T L L+ N + + S F P L LDL R ++ IED A+
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 72
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
+ + L P + F + + +AVE + + N+P+ +
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 124
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCI 255
++++N I F FS L+ L L LS NK+Q I
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC 304
L LS+N L+ + + L+++ L +I I +GA+ L ++ L + GNP+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 305 --GLAWLSEWVKRDYVEPGIA 323
+ LS K VE +A
Sbjct: 93 LGAFSGLSSLQKLVAVETNLA 113
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
SY ++P DLS +I + + + LS LS LIL+ N +Q + A +GL SL+
Sbjct: 45 SYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGN 298
+ +++ + L + L + N
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHN 134
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 201 FSSRIRVSYYVGNYPVSTMYRDLSNNQ----IGFLSNFTFSPLSKLSQLILSYNKLQCID 256
F++R R+++ N + T R+LS+ + I + + F L L + NKL+ +
Sbjct: 130 FTTR-RLTHIPAN--LLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMP 186
Query: 257 RDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-K 314
R + L+ ++L N + +P+G F L ++ + + NP C C + +LS W+ K
Sbjct: 187 RGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 246
Query: 315 RDYVEPGIARCT 326
E G A+C+
Sbjct: 247 NSQKEQGSAKCS 258
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTC 180
G+FG++P L +L+L NQ+ + D F+ + + P C+C
Sbjct: 188 GIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 234
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 88 CPSGCSCDGTRVDCSQRGLK--EIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNL 142
CP+ CSC GT VDC +RGL +P P+ TTEL+L N + + GL LP L
Sbjct: 2 CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPP-GLLDALPAL 57
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV--KRDYVEPGIARCTEP 328
L GN+++ +P G L A+ +G NP CDC L L W+ + + RC P
Sbjct: 38 LTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAP 97
Query: 329 ASMRDKLL 336
++R +LL
Sbjct: 98 PALRGRLL 105
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 64/271 (23%)
Query: 76 TRYAGDCLIDAACPSGCSCDGTR---------VDCSQRGLKEIPKDIPLY---TTELILN 123
TRY+ ++DA S + ++ L +I ++ TEL L
Sbjct: 46 TRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLM 105
Query: 124 DNEIGKIKSDGLFGRLPNLIKLDLRRNQV------TGI--------------------ED 157
N I KIKS+ F NLIKLDL N + TG+ E+
Sbjct: 106 SNSIHKIKSNP-FKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEE 164
Query: 158 NAFEGENDQGCLGDNYCP-----PKCTCTVRVLFYDGRAGECYIAVELFSSRI------R 206
F G + L + P P C T+ LF A+ L ++++ +
Sbjct: 165 LEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLF----------ALLLNNAQLNPHLTEK 214
Query: 207 VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPL--SKLSQLILSYNKLQCIDRDALAGLK 264
+ + + N + + L+NNQ+ S TFS L + L+QL LSYN L + + + L
Sbjct: 215 LCWELSNTSIQNL--SLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP 272
Query: 265 SLRIISLHGNDISMIPEGAFADLHAITHLAI 295
SLR +SL N+I + +F L + +L++
Sbjct: 273 SLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI-----PEGAFADLHAI 290
F PL L+ L LS N + I+ D L GL++L I+ N+++ + P G L +
Sbjct: 476 FRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGL 535
Query: 291 THLAI 295
+HL I
Sbjct: 536 SHLHI 540
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA--------LAGLKSLRIISLHG 273
DLSNN I ++ L L L +N L + + A L GL L I++L
Sbjct: 486 DLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLES 545
Query: 274 NDISMIPEGAFADLHAI 290
N + IP G F +L +
Sbjct: 546 NGLDEIPVGVFKNLFEL 562
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 92 CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
C+ DCS L IP D+P T L L N++ ++ F R L LD N
Sbjct: 2 CTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTN-FTRYSQLAILDAGFNS 60
Query: 152 VTGIE 156
++ +E
Sbjct: 61 ISKLE 65
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 30/211 (14%)
Query: 100 DCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNA 159
+C GL EIP +P T L + N + I++ F RL NL LDL R Q+ I ++
Sbjct: 18 NCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDT 76
Query: 160 FEGENDQGCLGDNYCP-----------PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVS 208
F+ ++ L P PK ++ LF+ + L + + S
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAETALSGPKA---LKHLFFIQTGISSIDFIPLHNQKTLES 133
Query: 209 YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI 268
Y+G+ +S++ GF P KL L N + + ++ ++ L+
Sbjct: 134 LYLGSNHISSIKLP-----KGF-------PTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181
Query: 269 IS--LHGNDISMIPEGAFADLHAITHLAIGG 297
+S L+GNDI+ I GAF D L GG
Sbjct: 182 LSLNLNGNDIAGIEPGAF-DSAVFQSLNFGG 211
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 23/105 (21%)
Query: 235 TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAI---- 290
+ L +L L+LS+ L ID+ A LK + + L N ++ A + L I
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL 530
Query: 291 --THLAI-----------------GGNPLYCDCGLAWLSEWVKRD 316
H++I NPL C C + EW K +
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKEN 575
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D+SNN + S F L +L +L +S NKL+ + +L + L ++ + N + +P+
Sbjct: 463 DVSNNNLDSFSLF----LPRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPD 516
Query: 282 GAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCT 326
G F L ++ + + NP C C + +LS W+ K E G A+C+
Sbjct: 517 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 563
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS N+I ++ + + L LIL +++ I+ DA L SL + L N +S +
Sbjct: 58 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 117
Query: 282 GAFADLHAITHLAIGGNP 299
F L ++ +L + GNP
Sbjct: 118 SWFGPLSSLKYLNLMGNP 135
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 188 DGRAGECYIAVELFSSRIRVSYYVGNYPVSTM-YRDLSNNQIGFLSNFTFSPLSKLSQLI 246
D RA + L SSRI Y + ++ + DLS+N + LS+ F PLS L L
Sbjct: 71 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 130
Query: 247 LSYNKLQCIDRDA----LAGLKSLRIISLHGN--DISMIPEGAFADLHAITHLAIGGNPL 300
L N Q + + L L++LRI GN S I FA L ++ L I L
Sbjct: 131 LMGNPYQTLGVTSLFPNLTNLQTLRI----GNVETFSEIRRIDFAGLTSLNELEIKALSL 186
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
P + D+SNN + S F L +L +L +S NKL+ + +L + L ++ + N
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF----LPRLQELYISRNKLKTLPDASLFPV--LLVMKISRN 483
Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCT 326
+ +P+G F L ++ + + NP C C + +LS W+ K E G A+C+
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 537
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS N+I ++ + + L LIL +++ I+ DA L SL + L N +S +
Sbjct: 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91
Query: 282 GAFADLHAITHLAIGGNP 299
F L ++ +L + GNP
Sbjct: 92 SWFGPLSSLKYLNLMGNP 109
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 188 DGRAGECYIAVELFSSRIRVSYYVGNYPVSTM-YRDLSNNQIGFLSNFTFSPLSKLSQLI 246
D RA + L SSRI Y + ++ + DLS+N + LS+ F PLS L L
Sbjct: 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104
Query: 247 LSYNKLQCIDRDA----LAGLKSLRIISLHGN--DISMIPEGAFADLHAITHLAIGG 297
L N Q + + L L++LRI GN S I FA L ++ L I
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRI----GNVETFSEIRRIDFAGLTSLNELEIKA 157
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ L LS+NK+ I L +L+++ L + I+ I AF L ++ HL + N L
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
K+ L L N++ I +D L++L+ +++ N + +P+G F L ++ ++ + NP
Sbjct: 451 KVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 301 YCDC-GLAWLSEWVKRDYVEPGIAR 324
C C G+ +LSEW+ + G+ R
Sbjct: 510 DCTCPGIRYLSEWINK---HSGVVR 531
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
+ VD S R L +PKD+P T L L+ N I +++ + L L L L N++ ++
Sbjct: 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRIRSLD 92
Query: 157 DNAFEGEND 165
+ F D
Sbjct: 93 FHVFLFNQD 101
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 19/197 (9%)
Query: 122 LNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG-ENDQGC-LGDN-YCPPKC 178
L+ N +G++ S +G LP + +DL++N + I+D F+ E Q L DN
Sbjct: 321 LSYNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379
Query: 179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSY-YVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
++ +F G + L ++ I +S + N + + + QI L+ FS
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439
Query: 238 PLS---------KLSQLILSYNKLQCIDR-----DALAGLKSLRIISLHGNDISMIPEGA 283
S L QL L N LQ D GL L+++ L+ N ++ +P G
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499
Query: 284 FADLHAITHLAIGGNPL 300
F+ L A+ L++ N L
Sbjct: 500 FSHLTALRGLSLNSNRL 516
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIIS------ 270
S + DLS+ + L++ F L L L L+YNK+ I +A GL +L++++
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 271 --LHGNDISMIPEGAFADLHAITHLAI 295
L+ ++ +P+ A+ DL H+AI
Sbjct: 327 GELYSSNFYGLPKVAYIDLQK-NHIAI 352
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L+ N+I +++ F L L L LSYN L + GL + I L N I++I +
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355
Query: 282 GAFADLHAITHLAIGGNPL 300
F L + L + N L
Sbjct: 356 QTFKFLEKLQTLDLRDNAL 374
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 30/38 (78%)
Query: 435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
++++C+S+ C+N+ATC+D I ++C C PG++G +C+
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
++ C NPC+N TC L + G F C C PGY G CEI
Sbjct: 2 VNECISNPCQNDATC-LDQIGEFQCICMPGYEGVYCEI 38
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
NPC+N A CLD + C C PG+ G
Sbjct: 8 NPCQNDATCLDQIGEFQCICMPGYEG 33
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
N C +PC N C ++QC C PGY G +CE
Sbjct: 3 NECISNPCQNDATCLDQI-GEFQCICMPGYEGVYCEI 38
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
CQN TC+D I ++ C C + G +CEI
Sbjct: 10 CQNDATCLDQIGEFQCICMPGYEGVYCEI 38
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 44/211 (20%)
Query: 95 DGTRV-DCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
+G R +C GL+EIP +P T L + N + I++ F RL NLI LDL R Q+
Sbjct: 11 EGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTT-FSRLINLIFLDLTRCQIN 69
Query: 154 GIEDNAFEGENDQGCLGDNYCP-----------PKC--------TCTVRVLFYDGRAGEC 194
+ ++ F+ + + P PK T + F E
Sbjct: 70 WVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLEN 129
Query: 195 YIAVELFSSRIRVSYYVGNYPVSTM-YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
++ L S+ I N+P + D NN I ++S + L + + L L++N
Sbjct: 130 LESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFN--- 186
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAF 284
GNDI I GAF
Sbjct: 187 -------------------GNDIKGIEPGAF 198
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
F L ++ L LS+N L DAL+ LK L + ++ N+I +IP L + + +
Sbjct: 495 FHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYL-NMASNNIRIIPPHLLPALSQQSIINL 553
Query: 296 GGNPLYCDCGLAWLSEWVKRD---YVEPGIARCTEPASMR 332
NPL C C W K + + C P S+R
Sbjct: 554 SHNPLDCTCSNIHFITWYKENLHKLEDSEETTCANPPSLR 593
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDH 493
D C S C+N +C D +Q+Y C C P F+G C+T C E C C DH
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--YCSDH 105
Query: 494 F-SHYTCECTPGFS 506
+ +C C G+S
Sbjct: 106 TGTKRSCRCHEGYS 119
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNA---TCVDLI 454
D C +PC+N G+CK + + C C P + G CE + DD L EN C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 106
Query: 455 -QAYECRCAPGF 465
CRC G+
Sbjct: 107 GTKRSCRCHEGY 118
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYT 536
+PC+NG C D Y C C P F G + +NGG C +D+T
Sbjct: 53 SPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSDHT 106
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
CQNGG+C D + Y C C F G+ CE
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCET 83
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID 398
+ C SPC N G C+ + Y C C P + G++CE D
Sbjct: 48 DQCASSPCQNGGSCKDQLQ-SYICFCLPAFEGRNCETHKD 86
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEY-NPCRNGARCLDHFSHY 497
C+S C +N +C D I Y C C+PG++G C+ C E + C++ CL Y
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESY 65
Query: 498 TCECTPGF 505
TC C G+
Sbjct: 66 TCSCAQGY 73
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCEN-NATCVDLIQAYE 458
C PC ++G+C+ G + C C+PGY G CE+ ++C + + C+ ++Y
Sbjct: 8 CISQPCLHNGSCQDSIWG-YTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 459 CRCAPGFQ 466
C CA G++
Sbjct: 67 CSCAQGYR 74
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR-- 418
C PC + G C+ Y C C+PGY G +CE + C+ P R G G+
Sbjct: 8 CISQPCLHNGSCQD-SIWGYTCTCSPGYEGSNCELAKNECH--PERTDGCQHFCLPGQES 64
Query: 419 FNCECAPGY 427
+ C CA GY
Sbjct: 65 YTCSCAQGY 73
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQ-TSPCQHHDCKNGICFQPQGS 580
C + G+C D I YTC C + G CE+A +P+ T CQH F G
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAK--NECHPERTDGCQH--------FCLPGQ 62
Query: 581 NDYLCKCAPGY 591
Y C CA GY
Sbjct: 63 ESYTCSCAQGY 73
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 20/120 (16%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQ-TSPCQHHDCKNGICFQPQGSND 59
+ G+C D I YTC C + G CE+A +P+ T CQH F G
Sbjct: 15 HNGSCQDSIWGYTCTCSPGYEGSNCELAK--NECHPERTDGCQH--------FCLPGQES 64
Query: 60 YLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTE 119
Y C CA GY E+ + C+ C G R L+++P + L +E
Sbjct: 65 YTCSCAQGYRLGEDHK-----QCVPHDQCACGVLTSEKRAP----DLQDLPWQVKLTNSE 115
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGXXXXXXXXX---XXXHMCQNGGTCVDGINDYTCK 538
PC + C D YTC C+PG+ G CQ+ C+ G YTC
Sbjct: 11 QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCS 68
Query: 539 C 539
C
Sbjct: 69 C 69
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDH 493
D C S C+N +C D +Q+Y C C P F+G C+T C E C C DH
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--YCSDH 105
Query: 494 F-SHYTCECTPGFS 506
+ +C C G+S
Sbjct: 106 TGTKRSCRCHEGYS 119
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNA---TCVDLI 454
D C +PC+N G+CK + + C C P + G CE + DD L EN C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 106
Query: 455 -QAYECRCAPGF 465
CRC G+
Sbjct: 107 GTKRSCRCHEGY 118
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
CQNGG+C D + Y C C F G+ CE
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCET 83
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
+PC+NG C D Y C C P F G
Sbjct: 53 SPCQNGGSCKDQLQSYICFCLPAFEG 78
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID 398
+ C SPC N G C+ + Y C C P + G++CE D
Sbjct: 48 DQCASSPCQNGGSCKDQLQ-SYICFCLPAFEGRNCETHKD 86
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 30/213 (14%)
Query: 100 DCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNA 159
+C GL EIP +P T L + N + I + F RL NL LDL R Q+ I ++
Sbjct: 15 NCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRT-FSRLMNLTFLDLTRCQINWIHEDT 73
Query: 160 FEGENDQGCLGDNYCP-----------PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVS 208
F+ + L P PK + L G + +I V + S
Sbjct: 74 FQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHL-FLIQTGISNLEFIPVHNLEN--LES 130
Query: 209 YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI 268
Y+G+ +S+ I F +F P L L N + I R+ + L+
Sbjct: 131 LYLGSNHISS---------IKFPKDF---PARNLKVLDFQNNAIHYISREDMRSLEQAIN 178
Query: 269 ISL--HGNDISMIPEGAFADLHAITHLAIGGNP 299
+SL +GN++ I GAF D L GG P
Sbjct: 179 LSLNFNGNNVKGIELGAF-DSTIFQSLNFGGTP 210
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
F L K+S + LS+N L C D+L+ LK + ++L N I++I L + + +
Sbjct: 493 FHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINL 551
Query: 296 GGNPLYCDCGLAWLSEWVKRDYVE---PGIARCTEPASMR 332
NPL C C W K + + C P S+R
Sbjct: 552 SHNPLDCTCSNIHFLTWYKENLHKLEGSEETTCANPPSLR 591
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDH 493
D C S C+N +C D +Q+Y C C P F+G C+T C E C C DH
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--YCSDH 105
Query: 494 F-SHYTCECTPGFS 506
+ +C C G+S
Sbjct: 106 TGTKRSCRCHEGYS 119
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNA---TCVDLI 454
D C +PC+N G+CK + + C C P + G CE + DD L EN C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 106
Query: 455 -QAYECRCAPGF 465
CRC G+
Sbjct: 107 GTKRSCRCHEGY 118
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCE 549
CQNGG+C D + Y C C F G+ CE
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
+PC+NG C D Y C C P F G
Sbjct: 53 SPCQNGGSCKDQLQSYICFCLPAFEG 78
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID 398
+ C SPC N G C+ + Y C C P + G++CE D
Sbjct: 48 DQCASSPCQNGGSCKDQLQ-SYICFCLPAFEGRNCETHKD 86
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDH 493
D C S C+N +C D +Q+Y C C P F+G C+T C E C C DH
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--YCSDH 64
Query: 494 F-SHYTCECTPGFS 506
+ +C C G+S
Sbjct: 65 TGTKRSCRCHEGYS 78
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNA---TCVDLI 454
D C +PC+N G+CK + + C C P + G CE + DD L EN C D
Sbjct: 7 DQCASSPCQNGGSCKDQLQ-SYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 65
Query: 455 -QAYECRCAPGF 465
CRC G+
Sbjct: 66 GTKRSCRCHEGY 77
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
+PC+NG C D Y C C P F G
Sbjct: 12 SPCQNGGSCKDQLQSYICFCLPAFEG 37
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCE 549
CQNGG+C D + Y C C F G+ CE
Sbjct: 14 CQNGGSCKDQLQSYICFCLPAFEGRNCE 41
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDH 493
D C S C+N +C D +Q+Y C C P F+G C+T C E C C DH
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--YCSDH 105
Query: 494 F-SHYTCECTPGFS 506
+ +C C G+S
Sbjct: 106 TGTKRSCRCHEGYS 119
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNA---TCVDLI 454
D C +PC+N G+CK + + C C P + G CE + DD L EN C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 106
Query: 455 -QAYECRCAPGF 465
CRC G+
Sbjct: 107 GTKRSCRCHEGY 118
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCE 549
CQNGG+C D + Y C C F G+ CE
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
+PC+NG C D Y C C P F G
Sbjct: 53 SPCQNGGSCKDQLQSYICFCLPAFEG 78
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID 398
+ C SPC N G C+ + Y C C P + G++CE D
Sbjct: 48 DQCASSPCQNGGSCKDQLQ-SYICFCLPAFEGRNCETHKD 86
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 521 MCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGS 580
+C GTC+DGI ++C C + G+FC+ C H+ C + G
Sbjct: 14 LCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHY------CLEEVGW 67
Query: 581 NDYLCKCAPGYSGKESLLQ 599
C CAPGY + LLQ
Sbjct: 68 RR--CSCAPGYKLGDDLLQ 84
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 444 CENNATCVDLIQAYECRCAPGFQGEFCQTKTPF--CAGEYNPCRNGARCLDHFSHYTCEC 501
C + TC+D I ++ C C G++G FCQ + F C+ + C + CL+ C C
Sbjct: 15 CCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSC 72
Query: 502 TPGF 505
PG+
Sbjct: 73 APGY 76
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 3 GTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLC 62
GTC+DGI ++C C + G+FC+ C H+ C + G C
Sbjct: 19 GTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHY------CLEEVGWRR--C 70
Query: 63 KCAPGY 68
CAPGY
Sbjct: 71 SCAPGY 76
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDH 493
D C S C+N +C D +Q+Y C C P F+G C+T C E C C DH
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--YCSDH 58
Query: 494 F-SHYTCECTPGFS 506
+ +C C G+S
Sbjct: 59 TGTKRSCRCHEGYS 72
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNAT---CVDLI 454
D C +PC+N G+CK + + C C P + G CE + DD L EN C D
Sbjct: 1 DQCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 59
Query: 455 -QAYECRCAPGF 465
CRC G+
Sbjct: 60 GTKRSCRCHEGY 71
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
+PC+NG C D Y C C P F G
Sbjct: 6 SPCQNGGSCKDQLQSYICFCLPAFEG 31
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
CQNGG+C D + Y C C F G+ CE
Sbjct: 8 CQNGGSCKDQLQSYICFCLPAFEGRNCET 36
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDAC-YGNPCRNSGTCKLLEE 416
C+ C P G+C +QC C + GQ C+ ++ C PC N GTC
Sbjct: 96 CDKCIPHPGCVHGICN----EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGP 151
Query: 417 GRFNCECAPGYTGDRCEI 434
++ C C GY+G CEI
Sbjct: 152 DKYQCSCPEGYSGPNCEI 169
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 382 CRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLS 441
CRC G+ G +C D C +P G C + C C + G C+ +++ C +
Sbjct: 85 CRCQYGWQGLYC----DKCIPHPGCVHGICNEP----WQCLCETNWGGQLCDKDLNYCGT 136
Query: 442 HK-CENNATCVDL-IQAYECRCAPGFQGEFCQ 471
H+ C N TC + Y+C C G+ G C+
Sbjct: 137 HQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 458 ECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGXXXXXXXXXX 517
+CRC G+QG +C P + C +CL C + G
Sbjct: 84 DCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCL---------CETNWGGQLCDKDLNYC 134
Query: 518 XXHM-CQNGGTCVD-GINDYTCKCEGDFVGKFCEI 550
H C NGGTC + G + Y C C + G CEI
Sbjct: 135 GTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKS 265
++S + P ST DLS N + L +++FS S+L L LS +++ I+ A GL
Sbjct: 22 KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 266 LRIISLHGNDISMIPEGAFADLHAITHLA 294
L + L GN I G+F+ L ++ +L
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + L ++P DIP T + L+ N + +KS F L LDL R ++ IED A+
Sbjct: 18 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAW 76
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
G + L P + F + E +AVE + + ++P+ +
Sbjct: 77 HGLHHLSNLILTGNPIQSFSPGS--FSGLTSLENLVAVETKLASLE------SFPIGQL- 127
Query: 221 RDLSNNQIGFLSNFT--------FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISL- 271
++ ++ NF FS L+ L + LSYN +Q I + L L+ ++L
Sbjct: 128 --ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Query: 272 ---HGNDISMIPEGAF--ADLHAIT 291
N I I + AF LH +T
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELT 210
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
LS+N L+ + + + L+ + L +I I + A+ LH +++L + GNP+
Sbjct: 39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 27/79 (34%)
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
F F+P +LS+L LS+N L+ + + GL ++ L
Sbjct: 76 FHFTP--RLSRLNLSFNALESLSWKTVQGL-------------------------SLQEL 108
Query: 294 AIGGNPLYCDCGLAWLSEW 312
+ GNPL+C C L WL W
Sbjct: 109 VLSGNPLHCSCALRWLQRW 127
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKS 265
++S + P ST DLS N + L +++FS S+L L LS +++ I+ A GL
Sbjct: 17 KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 76
Query: 266 LRIISLHGNDISMIPEGAFADLHAITHLA 294
L + L GN I G+F+ L ++ +L
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + L ++P DIP T + L+ N + +KS F L LDL R ++ IED A+
Sbjct: 13 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAW 71
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
G + L P + F + E +AVE + + ++P+ +
Sbjct: 72 HGLHHLSNLILTGNPIQSFSPGS--FSGLTSLENLVAVETKLASLE------SFPIGQL- 122
Query: 221 RDLSNNQIGFLSNFT--------FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISL- 271
++ ++ NF FS L+ L + LSYN +Q I + L L+ ++L
Sbjct: 123 --ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 180
Query: 272 ---HGNDISMIPEGAF--ADLHAIT 291
N I I + AF LH +T
Sbjct: 181 LDMSLNPIDFIQDQAFQGIKLHELT 205
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
LS+N L+ + + + L+ + L +I I + A+ LH +++L + GNP+
Sbjct: 34 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 87
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 213 NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
N P ST DLS N + L +++F +L L LS ++Q I+ A L L + L
Sbjct: 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 108
Query: 273 GNDISMIPEGAFADLHAITHLA 294
GN I + GAF+ L ++ L
Sbjct: 109 GNPIQSLALGAFSGLSSLQKLV 130
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 14/160 (8%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + +IP ++P T L L+ N + + S F P L LDL R ++ IED A+
Sbjct: 38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 96
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
+ + L P + F + + +AVE + + N+P+ +
Sbjct: 97 QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 148
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCI 255
++++N I F FS L+ L L LS NK+Q I
Sbjct: 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC 304
L LS+N L+ + + L+++ L +I I +GA+ L ++ L + GNP+
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 305 --GLAWLSEWVKRDYVEPGIA 323
+ LS K VE +A
Sbjct: 117 LGAFSGLSSLQKLVAVETNLA 137
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
SY ++P DLS +I + + + LS LS LIL+ N +Q + A +GL SL+
Sbjct: 69 SYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGN 298
+ +++ + L + L + N
Sbjct: 128 KLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
+ DLS Q+ LS F+ LS L L +S+N +D L SL+++ N I
Sbjct: 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Query: 280 PEGAFADL-HAITHLAIGGNPLYCDCGLAWLSEWVK---RDYVEPGIARCTEPA 329
+ ++ L + N C C +W+K + VE C P+
Sbjct: 558 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 611
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 213 NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
N P ST DLS N + L +++F +L L LS ++Q I+ A L L + L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 273 GNDISMIPEGAFADLHAITHLA 294
GN I + GAF+ L ++ L
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLV 106
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 14/160 (8%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
C + +IP ++P T L L+ N + + S F P L LDL R ++ IED A+
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 72
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
+ + L P + F + + +AVE + + N+P+ +
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 124
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCI 255
++++N I F FS L+ L L LS NK+Q I
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-- 304
LS+N L+ + + L+++ L +I I +GA+ L ++ L + GNP+
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 305 GLAWLSEWVKRDYVEPGIA 323
+ LS K VE +A
Sbjct: 95 AFSGLSSLQKLVAVETNLA 113
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
+ DLS Q+ LS F+ LS L L +S+N +D L SL+++ N I
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Query: 280 PEGAFADL-HAITHLAIGGNPLYCDCGLAWLSEWVK---RDYVEPGIARCTEPA 329
+ ++ L + N C C +W+K + VE C P+
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
SY ++P DLS +I + + + LS LS LIL+ N +Q + A +GL SL+
Sbjct: 45 SYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGN 298
+ +++ + L + L + N
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHN 134
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS+NQ+ L L L+ L +S+N+L + AL GL L+ + L GN++ +P
Sbjct: 83 DLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 282 GAFADLHAITHLAIGGNPL 300
G + L++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNDL 160
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 91/240 (37%), Gaps = 55/240 (22%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
V+C +R L +P D+P TT L L++N + L L +L+L R ++T ++
Sbjct: 14 EVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRCELTKLQV 72
Query: 158 NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVS 217
+ T+ VL ++L ++++ +G +
Sbjct: 73 DG---------------------TLPVLG----------TLDLSHNQLQSLPLLGQTLPA 101
Query: 218 TMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
D+S N++ L L +L +L L N+L+ + L L +SL ND++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 278 MIPEGAFADL-----------------------HAITHLAIGGNPLYCDCGLAWLSEWVK 314
+P G L H + + GNP C+C + + W++
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDHF- 494
C S C+N +C D +Q+Y C C P F+G C+T C E C C DH
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--YCSDHTG 59
Query: 495 SHYTCECTPGFS 506
+ +C C G+S
Sbjct: 60 TKRSCRCHEGYS 71
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
CQNGG+C D + Y C C F G+ CE
Sbjct: 7 CQNGGSCKDQLQSYICFCLPAFEGRNCET 35
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
+PC+NG C D Y C C P F G
Sbjct: 5 SPCQNGGSCKDQLQSYICFCLPAFEG 30
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNAT---CVDLI-Q 455
C +PC+N G+CK + + C C P + G CE + DD L EN C D
Sbjct: 2 CASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 456 AYECRCAPGF 465
CRC G+
Sbjct: 61 KRSCRCHEGY 70
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 15/65 (23%)
Query: 416 EGRFNCECAPGY------------TGDRCEINIDDCLS--HKCENNATCVDLIQAYECRC 461
EG ++C C+PGY + + C+ ++D+C S H+C+++ C + + +Y CRC
Sbjct: 65 EGSYDCVCSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSCRC 123
Query: 462 APGFQ 466
PG++
Sbjct: 124 RPGWK 128
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS+NQ+ L L L+ L +S+N+L + AL GL L+ + L GN++ +P
Sbjct: 83 DLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 282 GAFADLHAITHLAIGGNPL 300
G + L++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNNL 160
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 55/240 (22%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
V+C +R L +P D+P TT L L++N + L L +L+L R ++T ++
Sbjct: 14 EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQV 72
Query: 158 NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVS 217
+ T+ VL ++L ++++ +G +
Sbjct: 73 DG---------------------TLPVLG----------TLDLSHNQLQSLPLLGQTLPA 101
Query: 218 TMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
D+S N++ L L +L +L L N+L+ + L L +SL N+++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 278 MIPEGAFADL-----------------------HAITHLAIGGNPLYCDCGLAWLSEWVK 314
+P G L H + + GNP C+C + + W++
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS+NQ+ L L L+ L +S+N+L + AL GL L+ + L GN++ +P
Sbjct: 83 DLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 282 GAFADLHAITHLAIGGNPL 300
G + L++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNNL 160
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 55/240 (22%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
V+C +R L +P D+P TT L L++N + L L +L+L R ++T ++
Sbjct: 14 EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQV 72
Query: 158 NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVS 217
+ T+ VL ++L ++++ +G +
Sbjct: 73 DG---------------------TLPVLG----------TLDLSHNQLQSLPLLGQTLPA 101
Query: 218 TMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
D+S N++ L L +L +L L N+L+ + L L +SL N+++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 278 MIPEGAFADL-----------------------HAITHLAIGGNPLYCDCGLAWLSEWVK 314
+P G L H + + GNP C+C + + W++
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS+NQ+ L L L+ L +S+N+L + AL GL L+ + L GN++ +P
Sbjct: 83 DLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 282 GAFADLHAITHLAIGGNPL 300
G + L++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNNL 160
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 55/240 (22%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
V+C +R L +P D+P TT L L++N + L L +L+L R ++T ++
Sbjct: 14 EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQV 72
Query: 158 NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVS 217
+ T+ VL ++L ++++ +G +
Sbjct: 73 DG---------------------TLPVLG----------TLDLSHNQLQSLPLLGQTLPA 101
Query: 218 TMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
D+S N++ L L +L +L L N+L+ + L L +SL N+++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 278 MIPEGAFADL-----------------------HAITHLAIGGNPLYCDCGLAWLSEWVK 314
+P G L H + + GNP C+C + + W++
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
CQN G C DG+ +YTC C F GK CE+ F + + DC + C + Q N
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL--FTRKL----CSLDNGDC-DQFCHEEQ--N 100
Query: 582 DYLCKCAPGYS 592
+C CA GY+
Sbjct: 101 SVVCSCARGYT 111
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N G C DG+ +YTC C F GK CE+ F + + DC + C + Q N
Sbjct: 52 NQGKCKDGLGEYTCTCLEGFEGKNCEL--FTRKL----CSLDNGDC-DQFCHEEQ--NSV 102
Query: 61 LCKCAPGYS 69
+C CA GY+
Sbjct: 103 VCSCARGYT 111
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 359 NACYKSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCE-FMIDACYGNPCRNSGTCKLL-- 414
+ C SPC NQG C+ L E Y C C G+ G++CE F C ++G C
Sbjct: 43 DQCETSPCQNQGKCKDGLGE--YTCTCLEGFEGKNCELFTRKLC----SLDNGDCDQFCH 96
Query: 415 -EEGRFNCECAPGYT 428
E+ C CA GYT
Sbjct: 97 EEQNSVVCSCARGYT 111
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC+N +C D YTC C GF G
Sbjct: 46 ETSPCQNQGKCKDGLGEYTCTCLEGFEG 73
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFS 495
D C + C+N C D + Y C C GF+G+ C+ T C+ + C C + +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 100
Query: 496 HYTCECTPGFS 506
C C G++
Sbjct: 101 SVVCSCARGYT 111
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C +PC+N G CK G + C C G+ G CE+
Sbjct: 43 DQCETSPCQNQGKCKDG-LGEYTCTCLEGFEGKNCEL 78
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 521 MCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGS 580
+C GTC+ GI ++C C + G+FC+ C H+ C + G
Sbjct: 21 LCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHY------CLEEVGW 74
Query: 581 NDYLCKCAPGYSGKESLLQ 599
C CAPGY + LLQ
Sbjct: 75 RR--CSCAPGYKLGDDLLQ 91
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 429 GDRCEI-NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPF--CAGEYNPCR 485
GD+C + ++ + C + TC+ I ++ C C G++G FCQ + F C+ + C
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 486 NGARCLDHFSHYTCECTPGF 505
+ CL+ C C PG+
Sbjct: 66 H--YCLEEVGWRRCSCAPGY 83
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 3 GTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLC 62
GTC+ GI ++C C + G+FC+ C H+ C + G C
Sbjct: 26 GTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHY------CLEEVGWRR--C 77
Query: 63 KCAPGY 68
CAPGY
Sbjct: 78 SCAPGY 83
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 405 CRNSGTCKLLEEGRFNCECAPGYTGDRC--EINIDDCLSHKCENNATCVDLIQAYECRCA 462
C GTC + G F+C+C G+ G C E++ +C C++ + C CA
Sbjct: 22 CCGHGTC-IXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCA 80
Query: 463 PGFQ 466
PG++
Sbjct: 81 PGYK 84
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS+NQ+ L L L+ L +S+N+L + AL GL L+ + L GN++ +P
Sbjct: 84 DLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 142
Query: 282 GAFADLHAITHLAIGGNPL 300
G + L++ N L
Sbjct: 143 GLLTPTPKLEKLSLANNNL 161
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 55/240 (22%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
V+C +R L +P D+P TT L L++N + L L +L+L R ++T ++
Sbjct: 15 EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRCELTKLQV 73
Query: 158 NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVS 217
+ T+ VL ++L ++++ +G +
Sbjct: 74 DG---------------------TLPVLG----------TLDLSHNQLQSLPLLGQTLPA 102
Query: 218 TMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
D+S N++ L L +L +L L N+L+ + L L +SL N+++
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 278 MIPEGAFADL-----------------------HAITHLAIGGNPLYCDCGLAWLSEWVK 314
+P G L H + + GNP C+C + + W++
Sbjct: 163 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 222
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDHF- 494
C S C+N +C D +Q+Y C C P F+G C+T C E C C DH
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--YCSDHTG 59
Query: 495 SHYTCECTPGFS 506
+ +C C G+S
Sbjct: 60 TKRSCRCHEGYS 71
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
+PC+NG C D Y C C P F G
Sbjct: 5 SPCQNGGSCKDQLQSYICFCLPAFEG 30
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
CQNGG+C D + Y C C F G+ CE
Sbjct: 7 CQNGGSCKDQLQSYICFCLPAFEGRNCET 35
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNAT---CVDLI-Q 455
C +PC+N G+CK + + C C P + G CE + DD L EN C D
Sbjct: 2 CASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 456 AYECRCAPGF 465
CRC G+
Sbjct: 61 KRSCRCHEGY 70
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS+NQ+ L L L+ L +S+N+L + AL GL L+ + L GN++ +P
Sbjct: 83 DLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 282 GAFADLHAITHLAIGGNPL 300
G + L++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNNL 160
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 55/240 (22%)
Query: 98 RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
V+C +R L +P D+P TT L L++N + L L +L+L R ++T ++
Sbjct: 14 EVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRCELTKLQV 72
Query: 158 NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVS 217
+ T+ VL ++L ++++ +G +
Sbjct: 73 DG---------------------TLPVLG----------TLDLSHNQLQSLPLLGQTLPA 101
Query: 218 TMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
D+S N++ L L +L +L L N+L+ + L L +SL N+++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 278 MIPEGAFADL-----------------------HAITHLAIGGNPLYCDCGLAWLSEWVK 314
+P G L H + + GNP C+C + + W++
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
CQN G C DG+ +YTC C F GK CE+ F + + DC + C + Q N
Sbjct: 10 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL--FTRKL----CSLDNGDC-DQFCHEEQ--N 60
Query: 582 DYLCKCAPGYS 592
+C CA GY+
Sbjct: 61 SVVCSCARGYT 71
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N G C DG+ +YTC C F GK CE+ F + + DC + C + Q N
Sbjct: 12 NQGKCKDGLGEYTCTCLEGFEGKNCEL--FTRKL----CSLDNGDC-DQFCHEEQ--NSV 62
Query: 61 LCKCAPGYS 69
+C CA GY+
Sbjct: 63 VCSCARGYT 71
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 359 NACYKSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCE-FMIDACYGNPCRNSGTCKLL-- 414
+ C SPC NQG C+ L E Y C C G+ G++CE F C ++G C
Sbjct: 3 DQCETSPCQNQGKCKDGLGE--YTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCH 56
Query: 415 -EEGRFNCECAPGYT 428
E+ C CA GYT
Sbjct: 57 EEQNSVVCSCARGYT 71
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC+N +C D YTC C GF G
Sbjct: 6 ETSPCQNQGKCKDGLGEYTCTCLEGFEG 33
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFS 495
D C + C+N C D + Y C C GF+G+ C+ T C+ + C C + +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 60
Query: 496 HYTCECTPGFS 506
C C G++
Sbjct: 61 SVVCSCARGYT 71
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C +PC+N G CK G + C C G+ G CE+
Sbjct: 3 DQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCEL 38
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
++ L L NK++ I + L++L+ +++ N + +P+G F L ++ + + NP
Sbjct: 422 RIKVLDLHSNKIKSIPKQV-VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 301 YCDC-GLAWLSEWV-KRDYVEPGIARCT 326
C C + +LS W+ K E G A+C+
Sbjct: 481 DCSCPRIDYLSRWLNKNSQKEQGSAKCS 508
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
CQN G C DG+ +YTC C F GK CE+ F + + DC + C + Q N
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL--FTRKL----CSLDNGDC-DQFCHEEQ--N 100
Query: 582 DYLCKCAPGYS 592
+C CA GY+
Sbjct: 101 SVVCSCARGYT 111
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N G C DG+ +YTC C F GK CE+ F + + DC + C + Q N
Sbjct: 52 NQGKCKDGLGEYTCTCLEGFEGKNCEL--FTRKL----CSLDNGDC-DQFCHEEQ--NSV 102
Query: 61 LCKCAPGYS 69
+C CA GY+
Sbjct: 103 VCSCARGYT 111
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 359 NACYKSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCE-FMIDACYGNPCRNSGTCKLL-- 414
+ C SPC NQG C+ L E Y C C G+ G++CE F C ++G C
Sbjct: 43 DQCETSPCQNQGKCKDGLGE--YTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCH 96
Query: 415 -EEGRFNCECAPGYT 428
E+ C CA GYT
Sbjct: 97 EEQNSVVCSCARGYT 111
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC+N +C D YTC C GF G
Sbjct: 46 ETSPCQNQGKCKDGLGEYTCTCLEGFEG 73
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFS 495
D C + C+N C D + Y C C GF+G+ C+ T C+ + C C + +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 100
Query: 496 HYTCECTPGFS 506
C C G++
Sbjct: 101 SVVCSCARGYT 111
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C +PC+N G CK G + C C G+ G CE+
Sbjct: 43 DQCETSPCQNQGKCKDG-LGEYTCTCLEGFEGKNCEL 78
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
CQN G C DG+ +YTC C F GK CE+ + + DC + C + Q N
Sbjct: 55 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL------FTRKLCSLDNGDC-DQFCHEEQ--N 105
Query: 582 DYLCKCAPGYS 592
+C CA GY+
Sbjct: 106 SVVCSCARGYT 116
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N G C DG+ +YTC C F GK CE+ + + DC + C + Q N
Sbjct: 57 NQGKCKDGLGEYTCTCLEGFEGKNCEL------FTRKLCSLDNGDC-DQFCHEEQ--NSV 107
Query: 61 LCKCAPGYS 69
+C CA GY+
Sbjct: 108 VCSCARGYT 116
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE-FMIDACYGNPCRNSGTCKLL--- 414
+ C SPC NQG C+ +Y C C G+ G++CE F C ++G C
Sbjct: 48 DQCETSPCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHE 102
Query: 415 EEGRFNCECAPGYT 428
E+ C CA GYT
Sbjct: 103 EQNSVVCSCARGYT 116
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC+N +C D YTC C GF G
Sbjct: 51 ETSPCQNQGKCKDGLGEYTCTCLEGFEG 78
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFS 495
D C + C+N C D + Y C C GF+G+ C+ T C+ + C C + +
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 105
Query: 496 HYTCECTPGFS 506
C C G++
Sbjct: 106 SVVCSCARGYT 116
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C +PC+N G CK G + C C G+ G CE+
Sbjct: 48 DQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCEL 83
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
D C S C+N +C D +Q+Y C C P F+G C+T
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDD 438
D C +PC+N G+CK + + C C P + G CE + DD
Sbjct: 4 DQCASSPCQNGGSCKDQLQ-SYICFCLPAFEGRNCETHKDD 43
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
+PC+NG C D Y C C P F G
Sbjct: 9 SPCQNGGSCKDQLQSYICFCLPAFEG 34
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
CQNGG+C D + Y C C F G+ CE
Sbjct: 11 CQNGGSCKDQLQSYICFCLPAFEGRNCET 39
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID 398
+ C SPC N G C+ + Y C C P + G++CE D
Sbjct: 4 DQCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKD 42
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
D C S C+N +C D +Q+Y C C P F+G C+T
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
+PC+NG C D Y C C P F G
Sbjct: 9 SPCQNGGSCKDQLQSYICFCLPAFEG 34
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
CQNGG+C D + Y C C F G+ CE
Sbjct: 11 CQNGGSCKDQLQSYICFCLPAFEGRNCET 39
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
A+ + C+ DCS L ++P D+P T L L N++ ++ + F R L L
Sbjct: 1 ASSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSL 59
Query: 146 DLRRNQVTGIE 156
D+ N ++ +E
Sbjct: 60 DVGFNTISKLE 70
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 223 LSNNQIGFLSNFTFSPL--SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
LSN+Q+ SN TF L + L+ L LSYN L + D+ A L L L N+I +
Sbjct: 234 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 293
Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRD 333
+ L + +L + + LA L K D +C E +M D
Sbjct: 294 SHSLHGLFNVRYLNLKRSFTKQSISLASLP---KIDDFSFQWLKCLEHLNMED 343
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISL 271
DLS N + + N +F+ L +L L YN +Q + +L GL ++R ++L
Sbjct: 259 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 308
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 145 LDLRRNQVTGIEDNAFE--GENDQGCLGDNYCPPKCTCTVRVLFYDGRAG--ECYIAVEL 200
L+L +N+++ IE +AF G + LG N + T + G E Y++
Sbjct: 391 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE----WRGLENIFEIYLSYNK 446
Query: 201 FSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
+ R S+ + M R ++ + S F PL L+ L LS N + I+ D L
Sbjct: 447 YLQLTRNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDLSNNNIANINDDML 505
Query: 261 AGLKSLRIISLHGNDISMI-----PEGAFADLHAITHLAI 295
GL+ L I+ L N+++ + P G L ++HL I
Sbjct: 506 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 545
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA--------LAGLKSLRIISLHG 273
DLSNN I +++ L KL L L +N L + + A L GL L I++L
Sbjct: 491 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
N IP F DL + + +G N L
Sbjct: 551 NGFDEIPVEVFKDLFELKIIDLGLNNL 577
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
A+ + C+ DCS L ++P D+P T L L N++ ++ + F R L L
Sbjct: 6 ASSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSL 64
Query: 146 DLRRNQVTGIE 156
D+ N ++ +E
Sbjct: 65 DVGFNTISKLE 75
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 94/246 (38%), Gaps = 37/246 (15%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
TEL L N I KIK++ F + NLI LDL N G+ + L +
Sbjct: 110 TELHLMSNSIQKIKNNP-FVKQKNLITLDLSHN---GLSSTKLGTQVQLENLQELLLSNN 165
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIR-------------VSYYVGNYPV-------- 216
++ D A +EL S++I+ ++ N +
Sbjct: 166 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 225
Query: 217 -----STMYRDLS--NNQIGFLSNFTFSPL--SKLSQLILSYNKLQCIDRDALAGLKSLR 267
+T R+LS N+Q+ SN TF L + L+ L LSYN L + D+ A L L
Sbjct: 226 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 285
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTE 327
L N+I + + L + +L + + LA L K D +C E
Sbjct: 286 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP---KIDDFSFQWLKCLE 342
Query: 328 PASMRD 333
+M D
Sbjct: 343 HLNMED 348
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 145 LDLRRNQVTGIEDNAFE--GENDQGCLGDNYCPPKCTCTVRVLFYDGRAG--ECYIAVEL 200
L+L +N+++ IE +AF G + LG N + T + G E Y++
Sbjct: 396 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE----WRGLENIFEIYLSYNK 451
Query: 201 FSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
+ R S+ + M R ++ + S F PL L+ L LS N + I+ D L
Sbjct: 452 YLQLTRNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDLSNNNIANINDDML 510
Query: 261 AGLKSLRIISLHGNDISMI-----PEGAFADLHAITHLAI 295
GL+ L I+ L N+++ + P G L ++HL I
Sbjct: 511 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 550
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA--------LAGLKSLRIISLHG 273
DLSNN I +++ L KL L L +N L + + A L GL L I++L
Sbjct: 496 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
N IP F DL + + +G N L
Sbjct: 556 NGFDEIPVEVFKDLFELKIIDLGLNNL 582
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
CQN G C DG+ +YTC C F GK CE + + + DC C + Q N
Sbjct: 12 CQNQGKCKDGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQ--N 62
Query: 582 DYLCKCAPGYS 592
+C CA GY+
Sbjct: 63 SVVCSCARGYT 73
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N G C DG+ +YTC C F GK CE + + + DC C + Q N
Sbjct: 14 NQGKCKDGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQ--NSV 64
Query: 61 LCKCAPGYS 69
+C CA GY+
Sbjct: 65 VCSCARGYT 73
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE-FMIDACYGNPCRNSGTCKLL--- 414
+ C SPC NQG C+ +Y C C G+ G++CE F C ++G C
Sbjct: 5 DQCETSPCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHE 59
Query: 415 EEGRFNCECAPGYT 428
E+ C CA GYT
Sbjct: 60 EQNSVVCSCARGYT 73
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC+N +C D YTC C GF G
Sbjct: 8 ETSPCQNQGKCKDGLGEYTCTCLEGFEG 35
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFS 495
D C + C+N C D + Y C C GF+G+ C+ T C+ + C C + +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 62
Query: 496 HYTCECTPGFS 506
C C G++
Sbjct: 63 SVVCSCARGYT 73
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C +PC+N G CK G + C C G+ G CE+
Sbjct: 5 DQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCEL 40
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
CQN G C DG+ +YTC C F GK CE + + + DC C + Q N
Sbjct: 10 CQNQGKCKDGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQ--N 60
Query: 582 DYLCKCAPGYS 592
+C CA GY+
Sbjct: 61 SVVCSCARGYT 71
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N G C DG+ +YTC C F GK CE + + + DC C + Q N
Sbjct: 12 NQGKCKDGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQ--NSV 62
Query: 61 LCKCAPGYS 69
+C CA GY+
Sbjct: 63 VCSCARGYT 71
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE-FMIDACYGNPCRNSGTCKLL--- 414
+ C SPC NQG C+ +Y C C G+ G++CE F C ++G C
Sbjct: 3 DQCETSPCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHE 57
Query: 415 EEGRFNCECAPGYT 428
E+ C CA GYT
Sbjct: 58 EQNSVVCSCARGYT 71
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC+N +C D YTC C GF G
Sbjct: 6 ETSPCQNQGKCKDGLGEYTCTCLEGFEG 33
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFS 495
D C + C+N C D + Y C C GF+G+ C+ T C+ + C C + +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 60
Query: 496 HYTCECTPGFS 506
C C G++
Sbjct: 61 SVVCSCARGYT 71
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C +PC+N G CK G + C C G+ G CE+
Sbjct: 3 DQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCEL 38
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
CQN G C DG+ +YTC C F GK CE + + + DC C + Q N
Sbjct: 11 CQNQGKCKDGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQ--N 61
Query: 582 DYLCKCAPGYS 592
+C CA GY+
Sbjct: 62 SVVCSCARGYT 72
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N G C DG+ +YTC C F GK CE + + + DC C + Q N
Sbjct: 13 NQGKCKDGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQ--NSV 63
Query: 61 LCKCAPGYS 69
+C CA GY+
Sbjct: 64 VCSCARGYT 72
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE-FMIDACYGNPCRNSGTCKLL--- 414
+ C SPC NQG C+ +Y C C G+ G++CE F C ++G C
Sbjct: 4 DQCETSPCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHE 58
Query: 415 EEGRFNCECAPGYT 428
E+ C CA GYT
Sbjct: 59 EQNSVVCSCARGYT 72
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC+N +C D YTC C GF G
Sbjct: 7 ETSPCQNQGKCKDGLGEYTCTCLEGFEG 34
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFS 495
D C + C+N C D + Y C C GF+G+ C+ T C+ + C C + +
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 61
Query: 496 HYTCECTPGFS 506
C C G++
Sbjct: 62 SVVCSCARGYT 72
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C +PC+N G CK G + C C G+ G CE+
Sbjct: 4 DQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCEL 39
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
CQN G C DG+ +YTC C F GK CE + + + DC C + Q S
Sbjct: 12 CQNQGKCKDGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQAS- 63
Query: 582 DYLCKCAPGYS 592
+C CA GY+
Sbjct: 64 -VVCSCARGYT 73
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE-FMIDACYGNPCRNSGTCKLL--- 414
+ C SPC NQG C+ +Y C C G+ G++CE F C ++G C
Sbjct: 5 DQCETSPCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHE 59
Query: 415 EEGRFNCECAPGYT 428
E+ C CA GYT
Sbjct: 60 EQASVVCSCARGYT 73
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N G C DG+ +YTC C F GK CE + + + DC C + Q S
Sbjct: 14 NQGKCKDGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQAS--V 64
Query: 61 LCKCAPGYS 69
+C CA GY+
Sbjct: 65 VCSCARGYT 73
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC+N +C D YTC C GF G
Sbjct: 8 ETSPCQNQGKCKDGLGEYTCTCLEGFEG 35
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFS 495
D C + C+N C D + Y C C GF+G+ C+ T C+ + C C + +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQA 62
Query: 496 HYTCECTPGFS 506
C C G++
Sbjct: 63 SVVCSCARGYT 73
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C +PC+N G CK G + C C G+ G CE+
Sbjct: 5 DQCETSPCQNQGKCK-DGLGEYTCTCLEGFEGKNCEL 40
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 520 HMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA 551
H C N G C DGI DYTC C F GK CE +
Sbjct: 9 HPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFS 40
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT 474
D C H C N C D I Y C CA GF+G+ C+ T
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIA 28
N G C DGI DYTC C F GK CE +
Sbjct: 13 NQGHCKDGIGDYTCTCAEGFEGKNCEFS 40
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINI 436
D C G+PC N G CK G + C CA G+ G CE +
Sbjct: 4 DQCEGHPCLNQGHCK-DGIGDYTCTCAEGFEGKNCEFST 41
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
+ C PC NQG C+ Y C C G+ G++CEF
Sbjct: 4 DQCEGHPCLNQGHCKDGI-GDYTCTCAEGFEGKNCEF 39
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC N C D YTC C GF G
Sbjct: 7 EGHPCLNQGHCKDGIGDYTCTCAEGFEG 34
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 16/73 (21%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQ---PQ 578
C NGG C D IN Y C C+ F GK CE+ + KNG C Q
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGKNCELDATCNI-------------KNGRCKQFCKTG 102
Query: 579 GSNDYLCKCAPGY 591
+ LC C GY
Sbjct: 103 ADSKVLCSCTTGY 115
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQ---PQGS 57
NGG C D IN Y C C+ F GK CE+ + KNG C Q
Sbjct: 58 NGGLCKDDINSYECWCQVGFEGKNCELDATCNI-------------KNGRCKQFCKTGAD 104
Query: 58 NDYLCKCAPGY 68
+ LC C GY
Sbjct: 105 SKVLCSCTTGY 115
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
++ D C + C N C D I +YEC C GF+G+ C+
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE 83
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E NPC NG C D + Y C C GF G
Sbjct: 52 EPNPCLNGGLCKDDINSYECWCQVGFEG 79
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDA-CYGNPCRNSGTCKLLEEG 417
+ C +PC N G+C+ Y+C C G+ G++CE +DA C R CK +
Sbjct: 49 DQCEPNPCLNGGLCKD-DINSYECWCQVGFEGKNCE--LDATCNIKNGRCKQFCKTGADS 105
Query: 418 RFNCECAPGY 427
+ C C GY
Sbjct: 106 KVLCSCTTGY 115
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 223 LSNNQIGFLSNFTFSPL--SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
LSN+Q+ SN TF L + L+ L LSYN L + D+ A L L L N+I +
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRD 333
+ L + +L + + LA L K D +C E +M D
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLP---KIDDFSFQWLKCLEHLNMED 338
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 92 CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
C+ DCS L ++P D+P T L L N++ ++ + F R L LD+ N
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNT 60
Query: 152 VTGIE 156
++ +E
Sbjct: 61 ISKLE 65
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISL 271
DLS N + + N +F+ L +L L YN +Q + +L GL ++R ++L
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 145 LDLRRNQVTGIEDNAFE--GENDQGCLGDNYCPPKCTCTVRVLFYDGRAG--ECYIAVEL 200
L+L +N+++ IE +AF G + LG N + T + G E Y++
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE----WRGLENIFEIYLSYNK 441
Query: 201 FSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
+ R S+ + M R ++ + S F PL L+ L LS N + I+ D L
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDLSNNNIANINDDML 500
Query: 261 AGLKSLRIISLHGNDISMI-----PEGAFADLHAITHLAI 295
GL+ L I+ L N+++ + P G L ++HL I
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA--------LAGLKSLRIISLHG 273
DLSNN I +++ L KL L L +N L + + A L GL L I++L
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
N IP F DL + + +G N L
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNL 572
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 32/139 (23%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCE-CAPGYTG--------DRCEINIDDCLSHKCENNA 448
D C NPC C +G ++C C G+ G D C + D C S
Sbjct: 1 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFS--TSKVP 58
Query: 449 TCVDLIQAYECR-CAPGFQG--------EFCQTKTPFCAGEYNPCRNG-------ARC-- 490
CV+ + C C P ++G E +T+ C E NPC++ A C
Sbjct: 59 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPE-NPCKDKTHNCHKHAECIY 117
Query: 491 LDHFSH--YTCECTPGFSG 507
L HFS Y CEC G++G
Sbjct: 118 LGHFSDPMYKCECQTGYAG 136
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 32/139 (23%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCE-CAPGYTG--------DRCEINIDDCLSHKCENNA 448
D C NPC C +G ++C C G+ G D C + D C S
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFS--TSKVP 61
Query: 449 TCVDLIQAYECR-CAPGFQG--------EFCQTKTPFCAGEYNPCRNG-------ARC-- 490
CV+ + C C P ++G E +T+ C E NPC++ A C
Sbjct: 62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPE-NPCKDKTHNCHKHAECIY 120
Query: 491 LDHFSH--YTCECTPGFSG 507
L HFS Y CEC G++G
Sbjct: 121 LGHFSDPXYKCECQTGYAG 139
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
++ D C S+ C N +C D I +YEC C GF+G+ C+
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
C NGG+C D IN Y C C F GK CE+
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E NPC NG C D + Y C C GF G
Sbjct: 7 ESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEI 27
NGG+C D IN Y C C F GK CE+
Sbjct: 13 NGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C NPC N G+CK + + C C G+ G CE+
Sbjct: 4 DQCESNPCLNGGSCK-DDINSYECWCPFGFEGKNCEL 39
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
CQN G C G+ +YTC C F GK CE + + + DC C + Q N
Sbjct: 11 CQNQGKCKXGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQ--N 61
Query: 582 DYLCKCAPGYS 592
+C CA GY+
Sbjct: 62 SVVCSCARGYT 72
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE-FMIDACYGNPCRNSGTCKLL--- 414
+ C SPC NQG C+ +Y C C G+ G++CE F C ++G C
Sbjct: 4 DQCETSPCQNQGKCK-XGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHE 58
Query: 415 EEGRFNCECAPGYT 428
E+ C CA GYT
Sbjct: 59 EQNSVVCSCARGYT 72
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
N G C G+ +YTC C F GK CE + + + DC C + Q N
Sbjct: 13 NQGKCKXGLGEYTCTCLEGFEGKNCE------LFTRKLCSLDNGDCDQ-FCHEEQ--NSV 63
Query: 61 LCKCAPGYS 69
+C CA GY+
Sbjct: 64 VCSCARGYT 72
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C +PC+N G CK G + C C G+ G CE+
Sbjct: 4 DQCETSPCQNQGKCK-XGLGEYTCTCLEGFEGKNCEL 39
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSG 507
E +PC+N +C YTC C GF G
Sbjct: 7 ETSPCQNQGKCKXGLGEYTCTCLEGFEG 34
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFS 495
D C + C+N C + Y C C GF+G+ C+ T C+ + C C + +
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 61
Query: 496 HYTCECTPGFS 506
C C G++
Sbjct: 62 SVVCSCARGYT 72
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 520 HMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAP 552
H C N G C GI DYTC C F GK CE +
Sbjct: 53 HPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 85
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINI 436
D C G+PC N G CK G + C CA G+ G CE +
Sbjct: 48 DQCEGHPCLNQGHCK-XGIGDYTCTCAEGFEGKNCEFST 85
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT 474
D C H C N C I Y C CA GF+G+ C+ T
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 85
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAP 29
N G C GI DYTC C F GK CE +
Sbjct: 57 NQGHCKXGIGDYTCTCAEGFEGKNCEFST 85
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
+ C PC NQG C+ Y C C G+ G++CEF
Sbjct: 48 DQCEGHPCLNQGHCKX-GIGDYTCTCAEGFEGKNCEF 83
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L++ QI + + F+ + +L + +N ++ + + L ++ L ND+S +P
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140
Query: 282 GAFADLHAITHLAIGGNPL 300
G F + +T L++ N L
Sbjct: 141 GIFHNTPKLTTLSMSNNNL 159
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 78/197 (39%), Gaps = 29/197 (14%)
Query: 111 KDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG----ENDQ 166
+++PL T L+L N++ + G+F P L L + N + IED+ F+ +N Q
Sbjct: 120 QNVPLLTV-LVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 167 GCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNN 226
L N + LF+ ++ L S+ P++ D S+N
Sbjct: 178 --LSSNRLTHVDLSLIPSLFH------ANVSYNLLSTLA--------IPIAVEELDASHN 221
Query: 227 QIGFLSNFTFSPLS-KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285
I N P++ +L+ L L +N L D L L + L N++ I F
Sbjct: 222 SI----NVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275
Query: 286 DLHAITHLAIGGNPLYC 302
+ + L I N L
Sbjct: 276 KMQRLERLYISNNRLVA 292
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDA-CYGNPCRN--SGT--CK---LLE 415
+ C N GVC E +C C PG+ G+ CE + +G C+ SG CK
Sbjct: 203 TACMNNGVCH---EDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL 259
Query: 416 EGRFNCECAPGYTGDRCE------INIDDC-LSHKCENNATCVDLIQAYECRCAPGFQGE 468
+ C CA G+ G +C DC L C N C D Q C C+PG+QG
Sbjct: 260 PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC-DRFQG--CLCSPGWQGL 316
Query: 469 FCQ 471
C+
Sbjct: 317 QCE 319
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L++ QI + + F+ + +L + +N ++ + + L ++ L ND+S +P
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134
Query: 282 GAFADLHAITHLAIGGNPL 300
G F + +T L++ N L
Sbjct: 135 GIFHNTPKLTTLSMSNNNL 153
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 111 KDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+++PL T L+L N++ + G+F P L L + N + IED+ F+
Sbjct: 114 QNVPLLTV-LVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 403 NPCRNSGTCK----LLEEGRFNCECAPGY--TGDRCEINIDDCLSHKCENNATCVDLIQA 456
+ C+ CK + +G + CEC GY G+ C ++ D+C N TC ++I
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNGTCKNVIGG 64
Query: 457 YECRCAPGFQ 466
+EC C GF+
Sbjct: 65 FECTCEEGFE 74
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 520 HMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA 551
H C N G C GI DYTC C F GK CE +
Sbjct: 9 HPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFS 40
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINI 436
D C G+PC N G CK G + C CA G+ G CE +
Sbjct: 4 DQCEGHPCLNQGHCK-XGIGDYTCTCAEGFEGKNCEFST 41
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT 474
D C H C N C I Y C CA GF+G+ C+ T
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 41
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIA 28
N G C GI DYTC C F GK CE +
Sbjct: 13 NQGHCKXGIGDYTCTCAEGFEGKNCEFS 40
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
+ C PC NQG C+ Y C C G+ G++CEF
Sbjct: 4 DQCEGHPCLNQGHCKXGI-GDYTCTCAEGFEGKNCEF 39
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCE 549
C G CV+ IN+YTCKC+ F G CE
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 3 GTCVDGINDYTCKCEGDFVGKFCE 26
G CV+ IN+YTCKC+ F G CE
Sbjct: 131 GECVETINNYTCKCDPGFSGLKCE 154
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
C + C + CV+ I Y C+C PGF G C+
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 484 CRNGARCLDHFSHYTCECTPGFSG 507
C C++ ++YTC+C PGFSG
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSG 150
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCE 549
C G CV+ IN+YTCKC+ F G CE
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 3 GTCVDGINDYTCKCEGDFVGKFCE 26
G CV+ IN+YTCKC+ F G CE
Sbjct: 131 GECVETINNYTCKCDPGFSGLKCE 154
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
C + C + CV+ I Y C+C PGF G C+
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 484 CRNGARCLDHFSHYTCECTPGFSG 507
C C++ ++YTC+C PGFSG
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSG 150
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 581
C NGG C IN Y C C+ F GK CE+ A + C+ CK G +
Sbjct: 56 CLNGGLCKXDINSYECWCQVGFEGKNCELD---ATCNIKNGRCKQF-CKTG------ADS 105
Query: 582 DYLCKCAPGY 591
LC C GY
Sbjct: 106 KVLCSCTTGY 115
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDA-CYGNPCRNSGTCKLLEEG 417
+ C +PC N G+C+ Y+C C G+ G++CE +DA C R CK +
Sbjct: 49 DQCEPNPCLNGGLCK-XDINSYECWCQVGFEGKNCE--LDATCNIKNGRCKQFCKTGADS 105
Query: 418 RFNCECAPGY 427
+ C C GY
Sbjct: 106 KVLCSCTTGY 115
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
NGG C IN Y C C+ F GK CE+ A + C+ CK G +
Sbjct: 58 NGGLCKXDINSYECWCQVGFEGKNCELD---ATCNIKNGRCKQF-CKTG------ADSKV 107
Query: 61 LCKCAPGY 68
LC C GY
Sbjct: 108 LCSCTTGY 115
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
++ D C + C N C I +YEC C GF+G+ C+
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCE 83
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435
D C NPC N G CK + + C C G+ G CE++
Sbjct: 49 DQCEPNPCLNGGLCK-XDINSYECWCQVGFEGKNCELD 85
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 392 HCEFMI-DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINI 436
HC+ + AC NPC + G C L EG C C GYTG C+++
Sbjct: 39 HCQRLASQACRTNPCLHGGRC-LEVEGHRLCHCPVGYTGPFCDVDT 83
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
NPC +G RCL+ H C C G++G
Sbjct: 51 NPCLHGGRCLEVEGHRLCHCPVGYTG 76
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 3 GTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLC 62
G CV+ D+ CKC+ + F + + + Q P C+ G+C +GS Y C
Sbjct: 16 GQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLL---CRGGVCHNTEGS--YRC 70
Query: 63 KCAPGY 68
+C PG+
Sbjct: 71 ECPPGH 76
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 526 GTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLC 585
G CV+ D+ CKC+ + F + + + Q P C+ G+C +GS Y C
Sbjct: 16 GQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLL---CRGGVCHNTEGS--YRC 70
Query: 586 KCAPGY 591
+C PG+
Sbjct: 71 ECPPGH 76
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 430 DRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPF----CAGEYNPCR 485
D C I+ D C CV+ +EC+C G++ F K C + CR
Sbjct: 4 DECRISPDLC------GRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR 57
Query: 486 NGARCLDHFSHYTCECTPG 504
G C + Y CEC PG
Sbjct: 58 GGV-CHNTEGSYRCECPPG 75
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAFADLHAITHLAIGGNPL 300
L +L +SYN++ + + L +LR++ + N I+ E A L + L + GNPL
Sbjct: 96 LEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 153
Query: 301 YCD 303
Y D
Sbjct: 154 YND 156
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAFADLHAITHLAIGGNPL 300
L +L +SYN++ + + L +LR++ + N I+ E A L + L + GNPL
Sbjct: 95 LEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
Query: 301 YCD 303
Y D
Sbjct: 153 YND 155
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 522 CQNGGTCVDGINDYTCKCEGD-FVGKFCE 549
C+N G C DG N Y C C G ++G+ CE
Sbjct: 627 CKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 400 CYGNPCRNSGTCKLLEEG--RFNCECA-PGYTGDRCE 433
C NPC+N+G C+ +G R+ C+C+ GY G CE
Sbjct: 622 CLSNPCKNNGMCR---DGWNRYVCDCSGTGYLGRSCE 655
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 522 CQNGGTCVDGINDYTCKCEGD-FVGKFCE 549
C+N G C DG N Y C C G ++G+ CE
Sbjct: 627 CKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 400 CYGNPCRNSGTCKLLEEG--RFNCECA-PGYTGDRCE 433
C NPC+N+G C+ +G R+ C+C+ GY G CE
Sbjct: 622 CLSNPCKNNGMCR---DGWNRYVCDCSGTGYLGRSCE 655
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 522 CQNGGTCVDGINDYTCKCEGD-FVGKFCE 549
C+N G C DG N Y C C G ++G+ CE
Sbjct: 402 CKNNGMCRDGWNRYVCDCSGTGYLGRSCE 430
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 400 CYGNPCRNSGTCKLLEEG--RFNCECA-PGYTGDRCE 433
C NPC+N+G C+ +G R+ C+C+ GY G CE
Sbjct: 397 CLSNPCKNNGMCR---DGWNRYVCDCSGTGYLGRSCE 430
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 522 CQNGGTCVDGI--NDYTCKCEGDFVGKFCEI 550
C NGGTC + +D+ C+C F GK CEI
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1 NGGTCVDGI--NDYTCKCEGDFVGKFCEI 27
NGGTC + +D+ C+C F GK CEI
Sbjct: 58 NGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 401 YGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCE 433
Y C N G C +E + C C GY+GDRCE
Sbjct: 10 YDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCE 43
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 405 CRNSGTCKLLEE----GRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQ 455
C N G C ++++ R+ C+C PG+TG RC N+ K +N +L Q
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV----PMKVQNQEKAEELYQ 66
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
Minimized Average Structure
Length = 63
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 405 CRNSGTCKLLEE----GRFNCECAPGYTGDRCEINI 436
C N G C ++++ R+ C+C PG+TG RC N+
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 373 EPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTC---KLLEEGRFNCECAPGYTG 429
+P Y+C C GY + ++D C C SG C L E C CA G
Sbjct: 67 DPAQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVP 126
Query: 430 D-----RCEINIDDCLSHKCE-NNATCVDLIQAYECRCAPGF 465
+ +C + KC +N C ++ Y+C+C GF
Sbjct: 127 NPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGF 168
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 222 DLSNNQIGFLSNFTFSPLS-------KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
D S N+IG + F PL +S + LS N++ ++ + L I+L GN
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGN 467
Query: 275 DISMIPEGAFAD 286
++ IP+ + D
Sbjct: 468 XLTEIPKNSLKD 479
>pdb|3HNP|A Chain A, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|B Chain B, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|C Chain C, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|D Chain D, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|E Chain E, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|F Chain F, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
Length = 353
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 135 LFGRLPNLIKLDLRRNQVTGIEDNAFE 161
LFGR PN + D+R N+V G DN F+
Sbjct: 186 LFGR-PNTVTYDIRNNEVEGAVDNYFD 211
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 401 YGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCE 433
Y C N G C +E + C C GY+GDRC+
Sbjct: 10 YDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>pdb|3IZB|T Chain T, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3U5C|V Chain V, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|V Chain V, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 87
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRA 191
END+G L + Y P KC+ T R++ D A
Sbjct: 2 ENDKGQLVELYVPRKCSATNRIIKADDHA 30
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C +PC N+G C QY+C CT G++G++C
Sbjct: 18 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 168 CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
+GD + K T T++++ YD AG ++ + I GN R+ +
Sbjct: 341 LIGDYHLVSKATHTLQLIGYDDIAGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWN 400
Query: 228 IGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKS 265
G LS P KL + L +NK I +G++S
Sbjct: 401 NGHLSQAVHVPHGKLLETDLPFNKNDVIYVHCQSGIRS 438
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C +PC N+G C QY+C CT G++G++C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C +PC N+G C QY+C CT G++G++C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C PC +QG+C +YQC CT GY G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C PC +QG+C +YQC CT GY G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C PC +QG+C +YQC CT GY G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C PC +QG+C +YQC CT GY G +C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C PC +QG+C +YQC CT GY G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C PC +QG+C +YQC CT GY G +C
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 37
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 356 SKCNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
+ N C PC +QG+C +YQC CT GY G +C
Sbjct: 31 APVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C +PC N+G C QY+C CT G++G++C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 356 SKCNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
+ N C PC +QG+C +YQC CT GY G +C
Sbjct: 31 APVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 69
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C +PC N+G C QY+C CT G++G++C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 356 SKCNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
+ N C PC +QG+C +YQC CT GY G +C
Sbjct: 7 APVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
N C +PC N+G C QY+C CT G++G++C
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 356 SKCNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
+ N C PC +QG+C +YQC CT GY G +C
Sbjct: 11 APVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 49
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 356 SKCNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHC 393
+ N C PC +QG+C +YQC CT GY G +C
Sbjct: 7 APVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,165,707
Number of Sequences: 62578
Number of extensions: 885946
Number of successful extensions: 2899
Number of sequences better than 100.0: 236
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 1558
Number of HSP's gapped (non-prelim): 1085
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)