Query psy15407
Match_columns 604
No_of_seqs 862 out of 3764
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 20:14:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9t_B SLIT homolog 2 protein 100.0 8.1E-37 2.8E-41 293.3 17.2 213 85-350 2-214 (220)
2 2v70_A SLIT-2, SLIT homolog 2 100.0 4.1E-36 1.4E-40 288.4 16.1 213 86-350 3-215 (220)
3 3zyj_A Leucine-rich repeat-con 100.0 6.6E-33 2.3E-37 295.0 21.3 264 85-349 32-342 (440)
4 3zyi_A Leucine-rich repeat-con 100.0 1.9E-32 6.6E-37 292.5 20.0 264 85-349 43-353 (452)
5 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-32 6.3E-37 274.1 18.5 258 87-345 1-282 (285)
6 2wfh_A SLIT homolog 2 protein 100.0 3.7E-32 1.3E-36 255.1 13.4 186 86-349 2-187 (193)
7 1w8a_A SLIT protein; signaling 100.0 2.8E-31 9.6E-36 249.1 15.4 189 87-351 1-189 (192)
8 2xot_A Amphoterin-induced prot 100.0 8.5E-31 2.9E-35 271.1 15.6 231 85-348 9-250 (361)
9 2o6q_A Variable lymphocyte rec 100.0 6.4E-30 2.2E-34 253.5 19.4 239 89-344 9-262 (270)
10 3m19_A Variable lymphocyte rec 100.0 5.4E-30 1.8E-34 251.2 16.2 201 87-316 3-208 (251)
11 2z66_A Variable lymphocyte rec 100.0 8.8E-30 3E-34 257.4 16.6 251 88-340 1-303 (306)
12 2id5_A Lingo-1, leucine rich r 100.0 2.5E-29 8.7E-34 270.3 20.9 260 87-348 2-384 (477)
13 3e6j_A Variable lymphocyte rec 100.0 1E-28 3.6E-33 238.4 17.1 199 87-343 12-222 (229)
14 2o6s_A Variable lymphocyte rec 100.0 1.2E-27 4E-32 227.5 17.5 175 88-315 1-176 (208)
15 1p9a_G Platelet glycoprotein I 99.9 1.6E-27 5.6E-32 238.4 17.5 212 96-316 12-223 (290)
16 2z62_A TOLL-like receptor 4, v 99.9 4.4E-26 1.5E-30 226.7 17.3 234 92-329 3-267 (276)
17 3v47_A TOLL-like receptor 5B a 99.9 8.7E-25 3E-29 233.4 19.9 114 217-330 324-439 (455)
18 4g8a_A TOLL-like receptor 4; l 99.9 2E-25 6.7E-30 248.4 15.4 235 97-347 374-626 (635)
19 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-25 1.3E-29 248.5 17.1 250 97-348 384-674 (680)
20 4ay9_X Follicle-stimulating ho 99.9 9.8E-26 3.4E-30 232.1 9.2 205 87-293 1-231 (350)
21 2z80_A TOLL-like receptor 2, v 99.9 6.5E-25 2.2E-29 226.3 13.2 241 86-328 22-343 (353)
22 2o6r_A Variable lymphocyte rec 99.9 1.8E-24 6.3E-29 199.8 13.9 164 88-328 1-166 (177)
23 1xku_A Decorin; proteoglycan, 99.9 6E-24 2E-28 217.0 19.0 213 84-301 21-253 (330)
24 3vq2_A TLR4, TOLL-like recepto 99.9 1.8E-24 6.2E-29 239.5 14.2 233 96-342 352-602 (606)
25 2ft3_A Biglycan; proteoglycan, 99.9 9.3E-24 3.2E-28 215.7 18.3 215 85-301 24-277 (332)
26 3t6q_A CD180 antigen; protein- 99.9 5.4E-24 1.8E-28 235.7 16.1 242 97-341 328-603 (606)
27 2xwt_C Thyrotropin receptor; s 99.9 2.7E-24 9.3E-29 208.9 12.0 205 86-301 2-218 (239)
28 3g39_A Variable lymphocyte rec 99.9 2.2E-23 7.7E-28 191.0 12.6 153 87-344 2-163 (170)
29 4g8a_A TOLL-like receptor 4; l 99.9 9.2E-23 3.2E-27 226.8 15.8 186 88-302 23-215 (635)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-22 3.6E-27 223.3 15.7 89 86-175 22-111 (562)
31 3j0a_A TOLL-like receptor 5; m 99.9 6.7E-23 2.3E-27 235.2 13.5 124 217-347 481-608 (844)
32 2r9u_A Variable lymphocyte rec 99.9 1.6E-22 5.6E-27 185.8 13.0 131 85-316 3-134 (174)
33 3rfs_A Internalin B, repeat mo 99.9 5E-22 1.7E-26 196.8 15.7 187 97-314 44-232 (272)
34 4fbr_A Lectin, myxobacterial h 99.9 2.9E-26 1E-30 217.7 -16.4 201 364-594 38-265 (267)
35 3o6n_A APL1; leucine-rich repe 99.9 2E-21 6.9E-26 203.0 16.5 234 96-333 95-383 (390)
36 2vj3_A Neurogenic locus notch 99.9 2E-21 7E-26 170.0 12.1 114 435-550 4-119 (135)
37 1z1y_A Ookinete surface protei 99.9 7.8E-23 2.7E-27 189.9 3.1 149 440-601 9-178 (186)
38 3t6q_A CD180 antigen; protein- 99.9 3.1E-21 1.1E-25 213.6 16.3 200 86-299 2-213 (606)
39 2vj3_A Neurogenic locus notch 99.9 3.1E-21 1E-25 168.9 12.0 120 359-480 6-127 (135)
40 3oja_B Anopheles plasmodium-re 99.8 8.9E-21 3.1E-25 209.2 16.3 234 96-333 101-389 (597)
41 2z81_A CD282 antigen, TOLL-lik 99.8 9.5E-22 3.3E-26 215.0 8.0 219 96-328 312-539 (549)
42 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-21 7E-26 210.9 10.6 216 97-330 279-512 (520)
43 1z1y_A Ookinete surface protei 99.8 4.9E-22 1.7E-26 184.5 4.6 145 401-551 9-176 (186)
44 3vq2_A TLR4, TOLL-like recepto 99.8 1.7E-20 5.9E-25 207.6 15.4 200 88-301 5-217 (606)
45 2ygq_A WIF-1, WNT inhibitory f 99.8 4.5E-21 1.5E-25 192.4 8.7 162 398-601 149-311 (324)
46 2z63_A TOLL-like receptor 4, v 99.8 1E-20 3.5E-25 207.8 11.8 221 95-329 305-561 (570)
47 2ifg_A High affinity nerve gro 99.8 4.1E-20 1.4E-24 189.9 13.0 143 88-331 1-148 (347)
48 2z63_A TOLL-like receptor 4, v 99.8 9.9E-20 3.4E-24 199.8 16.4 194 91-298 2-210 (570)
49 1xku_A Decorin; proteoglycan, 99.8 1.2E-19 4.1E-24 185.0 15.8 185 97-301 79-276 (330)
50 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-19 4.4E-24 184.9 15.5 197 96-302 104-308 (332)
51 1ogq_A PGIP-2, polygalacturona 99.8 6.3E-20 2.1E-24 185.5 12.8 199 97-301 53-281 (313)
52 2xwt_C Thyrotropin receptor; s 99.8 4.2E-20 1.4E-24 179.2 10.5 197 95-299 32-237 (239)
53 1p9a_G Platelet glycoprotein I 99.8 2.1E-19 7E-24 179.5 15.7 176 115-301 10-185 (290)
54 2ygq_A WIF-1, WNT inhibitory f 99.8 1.5E-20 5.1E-25 188.6 7.3 158 363-551 152-309 (324)
55 3j0a_A TOLL-like receptor 5; m 99.8 2.8E-19 9.5E-24 205.1 18.6 210 91-301 1-351 (844)
56 4fcg_A Uncharacterized protein 99.8 4.6E-20 1.6E-24 187.7 10.3 198 96-301 83-290 (328)
57 1ziw_A TOLL-like receptor 3; i 99.8 7.4E-20 2.5E-24 205.3 12.9 182 91-301 1-184 (680)
58 2z81_A CD282 antigen, TOLL-lik 99.8 8.3E-20 2.8E-24 199.6 11.3 198 87-301 3-209 (549)
59 3cvr_A Invasion plasmid antige 99.8 2.8E-19 9.5E-24 193.8 14.4 181 91-301 55-243 (571)
60 1wwl_A Monocyte differentiatio 99.8 2.8E-20 9.6E-25 188.1 6.1 189 96-301 97-309 (312)
61 4d90_A EGF-like repeat and dis 99.8 2.2E-19 7.5E-24 159.2 10.5 126 398-551 1-134 (143)
62 3o53_A Protein LRIM1, AGAP0063 99.8 9.6E-20 3.3E-24 184.6 9.1 93 216-312 169-261 (317)
63 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-19 4E-24 183.6 9.4 202 97-304 79-307 (313)
64 3o6n_A APL1; leucine-rich repe 99.8 1.3E-18 4.4E-23 181.7 16.3 201 97-301 72-308 (390)
65 1h6u_A Internalin H; cell adhe 99.8 5.4E-19 1.9E-23 178.2 12.4 186 97-302 44-231 (308)
66 3fcs_B Integrin beta-3; beta p 99.8 4.8E-19 1.6E-23 192.8 12.1 166 360-549 436-627 (690)
67 4d90_A EGF-like repeat and dis 99.8 5.8E-19 2E-23 156.5 10.4 114 359-472 1-133 (143)
68 3fcs_B Integrin beta-3; beta p 99.8 3.8E-19 1.3E-23 193.6 10.8 138 400-550 437-600 (690)
69 3rgz_A Protein brassinosteroid 99.8 1.8E-18 6.2E-23 196.3 16.2 87 216-302 632-718 (768)
70 2o6q_A Variable lymphocyte rec 99.8 2.5E-18 8.6E-23 169.9 15.0 170 116-301 17-194 (270)
71 2vj2_A Jagged-1; signalling, p 99.8 5.8E-20 2E-24 167.1 2.9 150 416-598 14-169 (169)
72 3m19_A Variable lymphocyte rec 99.8 2.3E-18 7.8E-23 168.3 14.0 154 116-301 15-168 (251)
73 2vj2_A Jagged-1; signalling, p 99.8 9.4E-20 3.2E-24 165.7 3.6 151 378-550 15-169 (169)
74 4fbr_A Lectin, myxobacterial h 99.8 2.1E-22 7.2E-27 191.2 -14.5 186 377-601 10-205 (267)
75 3oja_A Leucine-rich immune mol 99.8 1.7E-18 5.9E-23 185.7 13.6 202 96-311 36-260 (487)
76 4glp_A Monocyte differentiatio 99.8 2.4E-19 8.1E-24 181.1 6.5 200 96-301 93-307 (310)
77 3oja_B Anopheles plasmodium-re 99.8 6.5E-18 2.2E-22 186.3 17.7 202 96-301 77-314 (597)
78 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 8.9E-23 188.4 12.6 79 87-174 30-111 (622)
79 1h6t_A Internalin B; cell adhe 99.7 3.3E-18 1.1E-22 170.9 11.2 164 97-302 49-214 (291)
80 4fcg_A Uncharacterized protein 99.7 1.9E-18 6.4E-23 175.8 9.3 197 96-300 106-313 (328)
81 2v9t_B SLIT homolog 2 protein 99.7 7.2E-18 2.5E-22 161.1 12.8 128 118-301 14-141 (220)
82 1xeu_A Internalin C; cellular 99.7 1.6E-18 5.6E-23 170.4 8.2 163 98-303 23-187 (263)
83 2z7x_B TOLL-like receptor 1, v 99.7 7.5E-18 2.6E-22 182.8 13.8 94 96-190 2-100 (520)
84 2o6s_A Variable lymphocyte rec 99.7 6.4E-18 2.2E-22 160.1 11.5 146 96-301 30-178 (208)
85 3o53_A Protein LRIM1, AGAP0063 99.7 5.3E-19 1.8E-23 179.1 4.2 187 97-301 37-227 (317)
86 4eco_A Uncharacterized protein 99.7 7.1E-18 2.4E-22 187.2 13.2 82 217-302 514-601 (636)
87 3rfs_A Internalin B, repeat mo 99.7 1.4E-17 4.8E-22 164.7 13.6 170 99-301 24-194 (272)
88 1ozn_A Reticulon 4 receptor; N 99.7 7.3E-18 2.5E-22 168.0 11.5 89 216-305 177-265 (285)
89 4ezg_A Putative uncharacterize 99.7 5.6E-18 1.9E-22 159.0 9.9 145 97-301 47-194 (197)
90 1wwl_A Monocyte differentiatio 99.7 2.1E-19 7E-24 181.7 0.0 192 97-301 46-266 (312)
91 2xot_A Amphoterin-induced prot 99.7 2.3E-17 8E-22 170.1 15.3 153 117-301 20-176 (361)
92 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-17 7E-22 158.0 12.9 130 97-279 35-168 (220)
93 1yo8_A Thrombospondin-2; EGF, 99.7 3E-17 1E-21 175.9 14.3 114 436-550 3-146 (634)
94 4eco_A Uncharacterized protein 99.7 9.3E-18 3.2E-22 186.2 10.5 203 96-301 275-526 (636)
95 4ecn_A Leucine-rich repeat pro 99.7 9.4E-18 3.2E-22 190.2 10.4 203 96-301 517-766 (876)
96 2z66_A Variable lymphocyte rec 99.7 8.1E-18 2.8E-22 169.5 8.2 205 97-304 81-290 (306)
97 1m9s_A Internalin B; cell inva 99.7 2.1E-17 7.2E-22 181.0 11.1 164 97-302 46-211 (605)
98 3zyj_A Leucine-rich repeat-con 99.7 1E-16 3.6E-21 169.9 16.1 178 97-278 91-293 (440)
99 3oja_A Leucine-rich immune mol 99.7 8.3E-18 2.8E-22 180.4 7.3 180 115-301 34-227 (487)
100 2id5_A Lingo-1, leucine rich r 99.7 1.2E-16 4E-21 171.4 15.8 231 96-329 82-386 (477)
101 2ell_A Acidic leucine-rich nuc 99.7 9.6E-18 3.3E-22 153.1 5.9 138 108-301 17-160 (168)
102 3e6j_A Variable lymphocyte rec 99.7 7.2E-17 2.4E-21 155.2 12.3 127 118-301 22-148 (229)
103 4fmz_A Internalin; leucine ric 99.7 2.6E-17 8.9E-22 168.8 9.6 186 96-304 134-327 (347)
104 1yo8_A Thrombospondin-2; EGF, 99.7 5.5E-17 1.9E-21 173.9 12.3 121 397-518 3-154 (634)
105 3zyi_A Leucine-rich repeat-con 99.7 1.8E-16 6.2E-21 168.7 16.0 179 97-279 102-305 (452)
106 3bz5_A Internalin-J, INLJ; leu 99.7 2.7E-16 9.3E-21 167.1 16.8 176 97-302 67-247 (457)
107 3bz5_A Internalin-J, INLJ; leu 99.7 1.9E-16 6.6E-21 168.3 15.5 174 97-302 45-226 (457)
108 1h6u_A Internalin H; cell adhe 99.7 4.9E-17 1.7E-21 163.8 10.3 183 101-302 26-209 (308)
109 4ecn_A Leucine-rich repeat pro 99.7 6.2E-17 2.1E-21 183.5 11.7 196 97-300 598-818 (876)
110 3rgz_A Protein brassinosteroid 99.7 4.8E-17 1.6E-21 184.6 9.8 85 217-301 419-503 (768)
111 4fmz_A Internalin; leucine ric 99.7 1.8E-16 6.2E-21 162.5 12.6 178 97-300 69-255 (347)
112 2z62_A TOLL-like receptor 4, v 99.7 2.2E-16 7.4E-21 156.5 12.7 179 96-279 30-239 (276)
113 1a9n_A U2A', U2A'; complex (nu 99.7 1.7E-17 5.7E-22 152.8 2.9 131 114-301 18-153 (176)
114 1h6t_A Internalin B; cell adhe 99.6 2.1E-16 7E-21 157.8 9.5 161 100-301 30-191 (291)
115 1o6v_A Internalin A; bacterial 99.6 3.8E-16 1.3E-20 166.9 11.7 179 97-300 180-365 (466)
116 2je0_A Acidic leucine-rich nuc 99.6 7.4E-17 2.5E-21 144.0 5.1 129 113-297 15-149 (149)
117 1xeu_A Internalin C; cellular 99.6 3.9E-16 1.3E-20 153.4 9.9 149 97-286 44-194 (263)
118 1jl5_A Outer protein YOPM; leu 99.6 2.5E-15 8.7E-20 159.5 15.8 180 96-302 175-371 (454)
119 1jl5_A Outer protein YOPM; leu 99.6 2.5E-15 8.6E-20 159.5 15.2 73 97-177 94-166 (454)
120 1m9s_A Internalin B; cell inva 99.6 2.1E-16 7E-21 173.1 6.6 163 99-302 26-189 (605)
121 4glp_A Monocyte differentiatio 99.6 1.4E-16 4.7E-21 160.8 4.1 192 97-301 67-285 (310)
122 2z80_A TOLL-like receptor 2, v 99.6 1.6E-15 5.5E-20 155.9 11.8 167 118-300 34-210 (353)
123 3k6s_B Integrin beta-2; cell r 99.6 3.2E-16 1.1E-20 170.0 6.7 134 401-551 433-593 (687)
124 3sb4_A Hypothetical leucine ri 99.6 2.2E-15 7.4E-20 153.3 12.4 200 97-301 52-310 (329)
125 3rfe_A Platelet glycoprotein I 99.6 2.5E-16 8.4E-21 136.3 4.1 106 243-351 11-120 (130)
126 2ell_A Acidic leucine-rich nuc 99.6 5.5E-16 1.9E-20 141.3 6.7 132 96-282 26-165 (168)
127 1o6v_A Internalin A; bacterial 99.6 2.1E-15 7.2E-20 161.1 12.1 186 97-302 159-345 (466)
128 1uzk_A Fibrillin-1; glycoprote 99.6 3.6E-17 1.2E-21 147.9 -1.7 137 435-595 2-156 (162)
129 3cvr_A Invasion plasmid antige 99.6 1.1E-15 3.7E-20 165.7 9.0 192 96-315 82-294 (571)
130 4ezg_A Putative uncharacterize 99.6 1.1E-15 3.7E-20 143.3 6.4 128 115-301 44-172 (197)
131 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.6E-20 156.2 7.7 210 96-311 32-268 (350)
132 2bou_A EGF-like module contain 99.6 9.8E-16 3.3E-20 135.4 5.4 114 403-550 7-134 (143)
133 1uzk_A Fibrillin-1; glycoprote 99.6 1E-16 3.6E-21 144.9 -1.2 132 396-547 2-156 (162)
134 2bou_A EGF-like module contain 99.6 1.6E-15 5.5E-20 134.0 6.3 65 363-433 6-82 (143)
135 2gy5_A Angiopoietin-1 receptor 99.6 2E-15 7E-20 156.6 8.1 190 376-599 135-351 (423)
136 3g06_A SSPH2 (leucine-rich rep 99.6 3E-15 1E-19 164.1 9.4 78 216-302 221-298 (622)
137 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8.6E-15 2.9E-19 160.2 13.0 189 97-316 334-526 (562)
138 2gy5_A Angiopoietin-1 receptor 99.6 7.1E-15 2.4E-19 152.5 11.1 180 379-596 184-381 (423)
139 3k6s_B Integrin beta-2; cell r 99.6 2.8E-15 9.4E-20 162.7 8.0 163 362-550 433-623 (687)
140 4b8c_D Glucose-repressible alc 99.6 2.3E-15 7.7E-20 169.0 7.4 173 96-302 175-355 (727)
141 1a9n_A U2A', U2A'; complex (nu 99.5 2.9E-15 9.7E-20 137.7 5.9 129 96-279 21-155 (176)
142 1dx5_I Thrombomodulin; serine 99.5 9.4E-16 3.2E-20 130.2 2.2 102 435-546 3-111 (118)
143 3v47_A TOLL-like receptor 5B a 99.5 2.3E-14 7.8E-19 152.5 13.5 138 115-281 275-412 (455)
144 3goz_A Leucine-rich repeat-con 99.5 2.2E-15 7.5E-20 155.4 2.4 205 97-303 25-299 (362)
145 1w8a_A SLIT protein; signaling 99.5 1.9E-14 6.4E-19 134.2 8.3 107 95-254 30-140 (192)
146 2ca6_A RAN GTPase-activating p 99.5 2.8E-16 9.7E-21 163.6 -4.9 88 217-304 217-319 (386)
147 2je0_A Acidic leucine-rich nuc 99.5 9.5E-15 3.3E-19 130.2 4.7 123 96-273 19-149 (149)
148 1tpg_A T-plasminogen activator 99.5 2.3E-14 7.7E-19 115.2 6.2 86 379-475 1-89 (91)
149 2wfh_A SLIT homolog 2 protein 99.5 7.6E-14 2.6E-18 130.1 10.7 106 96-254 33-140 (193)
150 1dce_A Protein (RAB geranylger 99.5 1.4E-16 4.7E-21 173.5 -10.7 177 114-303 348-548 (567)
151 3goz_A Leucine-rich repeat-con 99.5 5.5E-16 1.9E-20 159.9 -5.7 195 99-301 3-238 (362)
152 4b8c_D Glucose-repressible alc 99.5 5.9E-15 2E-19 165.6 2.0 159 101-298 208-369 (727)
153 1dce_A Protein (RAB geranylger 99.5 3.8E-14 1.3E-18 154.2 8.3 122 141-295 442-567 (567)
154 4aqs_A Laminin subunit beta-1; 99.5 1.4E-14 4.7E-19 156.2 4.0 212 378-597 277-524 (525)
155 2ast_B S-phase kinase-associat 99.5 4.1E-15 1.4E-19 151.6 -0.4 76 97-174 73-152 (336)
156 3sb4_A Hypothetical leucine ri 99.4 7.1E-13 2.4E-17 134.6 14.0 183 97-295 104-328 (329)
157 1tpg_A T-plasminogen activator 99.4 1E-13 3.4E-18 111.4 5.9 56 493-550 28-86 (91)
158 2w86_A Fibrillin-1, fibrillin1 99.4 5.1E-15 1.7E-19 131.4 -2.3 131 394-547 1-141 (147)
159 2o6r_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 123.7 10.0 85 217-301 29-113 (177)
160 1dx5_I Thrombomodulin; serine 99.4 2.2E-14 7.4E-19 121.8 1.2 102 473-594 3-111 (118)
161 1ds9_A Outer arm dynein; leuci 99.4 1.2E-15 4E-20 143.2 -8.4 61 217-279 94-155 (198)
162 2ca6_A RAN GTPase-activating p 99.4 1.2E-14 4.2E-19 151.1 -2.9 198 97-302 35-288 (386)
163 1ds9_A Outer arm dynein; leuci 99.4 3E-15 1E-19 140.4 -8.9 122 126-306 36-158 (198)
164 2ast_B S-phase kinase-associat 99.4 2.1E-14 7.3E-19 146.3 -3.9 189 96-299 49-258 (336)
165 4fdw_A Leucine rich hypothetic 99.3 1.7E-11 5.8E-16 127.5 16.0 73 96-172 137-211 (401)
166 2w86_A Fibrillin-1, fibrillin1 99.3 1.4E-13 4.7E-18 122.1 -1.9 130 356-509 2-141 (147)
167 1z7x_W Ribonuclease inhibitor; 99.3 6.5E-14 2.2E-18 149.2 -5.1 84 217-301 200-297 (461)
168 4fdw_A Leucine rich hypothetic 99.3 4.2E-11 1.4E-15 124.5 16.1 187 95-299 158-356 (401)
169 1aut_L Activated protein C; se 99.3 3.9E-12 1.3E-16 107.1 5.2 91 435-531 5-109 (114)
170 1z7x_W Ribonuclease inhibitor; 99.2 7.8E-14 2.7E-18 148.6 -7.0 84 217-301 314-411 (461)
171 1emn_A Fibrillin; extracellula 99.2 5.9E-12 2E-16 99.0 4.7 68 513-593 4-75 (82)
172 1emn_A Fibrillin; extracellula 99.2 1.5E-11 5E-16 96.8 5.4 70 473-546 4-76 (82)
173 1lmj_A Fibrillin 1; EGF, calci 99.2 1.1E-11 3.6E-16 98.7 4.0 71 473-546 2-79 (86)
174 1x7a_L Coagulation factor IX, 99.2 1.9E-11 6.6E-16 107.4 5.3 74 513-599 47-127 (146)
175 3g39_A Variable lymphocyte rec 99.2 4.2E-11 1.4E-15 109.0 7.5 82 217-301 10-91 (170)
176 3rfe_A Platelet glycoprotein I 99.1 5.1E-11 1.8E-15 102.7 7.2 66 87-153 1-68 (130)
177 1x7a_L Coagulation factor IX, 99.1 2.9E-11 1E-15 106.3 5.6 74 435-511 47-125 (146)
178 1nfu_B Coagulation factor XA, 99.1 1.2E-11 4.1E-16 113.2 2.6 85 435-525 41-130 (195)
179 1z6c_A Vitamin K-dependent pro 99.1 2.7E-11 9.1E-16 96.5 4.2 73 473-550 2-78 (87)
180 2r9u_A Variable lymphocyte rec 99.1 7.8E-11 2.7E-15 107.6 7.5 81 218-301 14-94 (174)
181 2ifg_A High affinity nerve gro 99.1 4.4E-11 1.5E-15 122.3 5.5 85 116-254 32-117 (347)
182 1lmj_A Fibrillin 1; EGF, calci 99.1 4E-11 1.4E-15 95.3 3.8 72 435-509 2-80 (86)
183 2c4f_L Coagulation factor VII 99.1 8.8E-11 3E-15 102.9 5.9 75 435-511 46-128 (142)
184 2vh0_B Activated factor XA lig 99.1 3.7E-11 1.3E-15 104.1 2.5 75 435-511 41-120 (134)
185 3un9_A NLR family member X1; l 99.1 1.8E-12 6.2E-17 133.5 -7.0 40 116-155 102-141 (372)
186 2c4f_L Coagulation factor VII 99.1 1.5E-10 5.1E-15 101.5 6.2 76 473-550 46-129 (142)
187 2w2n_E LDL receptor, low-densi 99.1 5.1E-11 1.7E-15 98.5 2.8 79 461-546 18-100 (107)
188 1z6c_A Vitamin K-dependent pro 99.0 7.5E-11 2.6E-15 93.9 3.4 76 396-477 2-83 (87)
189 1nfu_B Coagulation factor XA, 99.0 2.1E-11 7E-16 111.7 0.1 76 513-599 41-122 (195)
190 1aut_L Activated protein C; se 99.0 2.7E-10 9.3E-15 95.8 5.9 89 396-493 5-109 (114)
191 1klo_A Laminin; glycoprotein; 99.0 1.1E-10 3.7E-15 104.6 3.5 133 365-551 2-147 (162)
192 2vh0_B Activated factor XA lig 99.0 4.1E-11 1.4E-15 103.9 0.1 76 513-599 41-122 (134)
193 2p28_B Integrin beta-2; hybrid 99.0 3.3E-10 1.1E-14 105.7 5.1 61 482-550 143-214 (217)
194 1n7d_A LDL receptor, low-densi 98.9 6.9E-09 2.4E-13 115.7 15.2 167 405-597 183-372 (699)
195 1klo_A Laminin; glycoprotein; 98.9 3.8E-10 1.3E-14 101.0 3.8 32 563-598 108-146 (162)
196 2w2n_E LDL receptor, low-densi 98.9 3E-10 1E-14 93.9 1.9 79 500-595 17-101 (107)
197 2p28_B Integrin beta-2; hybrid 98.9 6.5E-10 2.2E-14 103.8 3.9 62 519-599 142-215 (217)
198 1n7d_A LDL receptor, low-densi 98.9 3.5E-09 1.2E-13 118.1 9.9 164 365-545 182-364 (699)
199 3u7u_G Neuregulin 1; signaling 98.8 1.8E-09 6E-14 76.4 4.1 45 507-551 1-50 (55)
200 4aqs_A Laminin subunit beta-1; 98.8 1.2E-09 4.2E-14 117.5 4.8 163 380-550 344-525 (525)
201 3un9_A NLR family member X1; l 98.8 4.3E-11 1.5E-15 123.2 -8.4 170 109-301 66-252 (372)
202 3h5c_B Vitamin K-dependent pro 98.8 4.9E-09 1.7E-13 105.5 5.9 71 473-545 4-75 (317)
203 3u7u_G Neuregulin 1; signaling 98.7 4.1E-09 1.4E-13 74.5 3.1 44 430-473 2-50 (55)
204 3h5c_B Vitamin K-dependent pro 98.7 8.4E-09 2.9E-13 103.8 6.5 74 434-509 3-77 (317)
205 3ogk_B Coronatine-insensitive 98.6 5.5E-10 1.9E-14 122.7 -6.6 75 97-172 273-350 (592)
206 4fs7_A Uncharacterized protein 98.6 3.2E-07 1.1E-11 95.2 14.5 79 217-298 298-376 (394)
207 3m0c_C LDL receptor, low-densi 98.6 3.4E-08 1.2E-12 110.9 7.3 123 460-597 257-390 (791)
208 3m0c_C LDL receptor, low-densi 98.6 2.3E-08 7.7E-13 112.3 5.6 160 370-545 204-382 (791)
209 1edm_B Factor IX; epidermal gr 98.6 4.1E-08 1.4E-12 64.7 4.4 37 513-549 2-38 (39)
210 3ogk_B Coronatine-insensitive 98.4 5.4E-09 1.9E-13 114.7 -4.9 83 217-300 294-390 (592)
211 1edm_B Factor IX; epidermal gr 98.4 2.3E-07 8E-12 61.0 4.6 37 435-471 2-38 (39)
212 4h09_A Hypothetical leucine ri 98.4 1.5E-06 5.1E-11 89.5 12.1 132 135-298 212-343 (379)
213 2p1m_B Transport inhibitor res 98.4 3.3E-09 1.1E-13 116.4 -8.7 83 217-300 433-518 (594)
214 3p5b_L Low density lipoprotein 98.3 3E-07 1E-11 95.6 5.7 67 515-594 1-71 (400)
215 3rw6_A Nuclear RNA export fact 98.3 7.4E-09 2.5E-13 100.3 -6.1 77 217-294 171-257 (267)
216 4gt6_A Cell surface protein; l 98.3 2.6E-06 8.8E-11 88.3 12.4 81 217-300 289-369 (394)
217 3v65_B Low-density lipoprotein 98.3 7.5E-08 2.6E-12 99.6 0.6 74 513-599 2-84 (386)
218 4fs7_A Uncharacterized protein 98.3 2.3E-06 7.8E-11 88.7 11.6 72 226-299 148-219 (394)
219 3p5b_L Low density lipoprotein 98.3 3.4E-07 1.2E-11 95.1 5.1 67 398-468 1-71 (400)
220 2wg3_C Hedgehog-interacting pr 98.3 7E-08 2.4E-12 101.6 -0.3 78 499-600 379-457 (463)
221 3v65_B Low-density lipoprotein 98.3 9.5E-08 3.2E-12 98.9 0.6 53 489-544 16-73 (386)
222 1hae_A Heregulin-alpha; growth 98.3 2.8E-07 9.6E-12 67.9 2.9 49 355-403 3-55 (63)
223 4h09_A Hypothetical leucine ri 98.3 3.2E-06 1.1E-10 87.0 11.2 139 116-288 218-356 (379)
224 1egf_A Epidermal growth factor 98.3 7.3E-07 2.5E-11 63.0 4.2 39 513-551 2-45 (53)
225 2p1m_B Transport inhibitor res 98.3 2.8E-08 9.6E-13 109.0 -5.1 186 97-298 108-324 (594)
226 2wg3_C Hedgehog-interacting pr 98.2 1.4E-07 4.6E-12 99.4 -0.1 79 458-551 378-456 (463)
227 1k36_A Epiregulin; EGF-like fo 98.2 5.7E-07 2E-11 61.2 2.3 40 561-600 3-45 (46)
228 1egf_A Epidermal growth factor 98.2 2.2E-06 7.5E-11 60.5 5.0 39 436-474 3-46 (53)
229 2k2s_B Micronemal protein 6; m 98.2 4.3E-07 1.5E-11 65.6 1.3 38 513-550 10-50 (61)
230 3rw6_A Nuclear RNA export fact 98.2 2.6E-07 8.8E-12 89.5 0.1 79 221-301 148-233 (267)
231 3ca7_A Protein spitz; argos, E 98.2 2E-07 6.7E-12 65.6 -0.5 42 497-550 3-48 (52)
232 3zyj_B Netrin-G1; cell adhesio 98.1 9.1E-07 3.1E-11 89.9 3.8 110 366-493 299-410 (426)
233 3zyj_B Netrin-G1; cell adhesio 98.1 6.9E-07 2.3E-11 90.8 2.4 113 410-542 305-419 (426)
234 1io0_A Tropomodulin; LRR prote 98.1 1.5E-07 5.1E-12 86.5 -2.6 85 217-301 66-164 (185)
235 1a3p_A Epidermal growth factor 98.1 2.4E-06 8.3E-11 58.0 4.1 35 516-550 2-41 (45)
236 4gt6_A Cell surface protein; l 98.1 9.5E-06 3.3E-10 84.0 10.5 140 125-300 251-390 (394)
237 1a3p_A Epidermal growth factor 98.1 3E-06 1E-10 57.5 4.2 33 365-397 10-43 (45)
238 1k36_A Epiregulin; EGF-like fo 98.1 2.1E-06 7.2E-11 58.3 3.2 37 513-550 2-43 (46)
239 1io0_A Tropomodulin; LRR prote 98.0 4E-07 1.4E-11 83.6 -2.4 62 217-278 94-165 (185)
240 1hae_A Heregulin-alpha; growth 97.9 2.8E-06 9.5E-11 62.5 1.9 42 437-478 7-53 (63)
241 2k2s_B Micronemal protein 6; m 97.9 2.7E-06 9.3E-11 61.4 1.1 37 435-471 10-49 (61)
242 2ra8_A Uncharacterized protein 97.9 2.3E-06 7.8E-11 87.2 0.7 63 238-300 250-319 (362)
243 3ca7_A Protein spitz; argos, E 97.8 1.5E-06 5E-11 61.1 -1.2 29 443-471 15-47 (52)
244 2fd6_A Urokinase-type plasmino 97.7 3.4E-05 1.2E-09 64.9 4.8 59 521-598 2-63 (122)
245 1nql_B Epidermal growth factor 97.7 2E-05 6.7E-10 55.3 2.4 33 519-551 11-45 (53)
246 2ra8_A Uncharacterized protein 97.6 4.7E-06 1.6E-10 84.9 -1.7 160 114-299 171-341 (362)
247 1nql_B Epidermal growth factor 97.5 3.9E-05 1.3E-09 53.8 2.8 40 357-396 5-45 (53)
248 3e4g_A ATP synthase subunit S, 97.4 2.6E-05 8.9E-10 70.0 0.4 84 217-300 62-151 (176)
249 2fd6_A Urokinase-type plasmino 97.3 0.00019 6.4E-09 60.3 4.2 60 483-551 2-64 (122)
250 3ltf_D Protein spitz; receptor 97.3 0.00015 5.1E-09 51.8 3.0 31 521-551 15-49 (58)
251 3e50_C Protransforming growth 97.1 0.00032 1.1E-08 48.0 3.0 35 566-600 13-47 (50)
252 1xdt_R Hbegf, heparin-binding 97.0 0.00018 6E-09 54.1 1.5 39 561-599 37-78 (79)
253 3ltf_D Protein spitz; receptor 97.0 0.00013 4.3E-09 52.2 0.5 34 568-601 15-51 (58)
254 1g1s_A P-selectin; selectin, l 97.0 0.00029 1E-08 62.7 2.8 36 515-550 120-155 (162)
255 2rnl_A Amphiregulin; AR, color 97.0 0.00047 1.6E-08 47.2 2.9 38 562-599 10-50 (50)
256 1apq_A Complement protease C1R 96.9 0.00063 2.2E-08 47.7 3.3 32 513-546 3-44 (53)
257 3e4g_A ATP synthase subunit S, 96.8 0.00018 6.2E-09 64.5 -0.1 34 116-150 62-95 (176)
258 1iox_A Betacellulin; EGF-like 96.8 0.00045 1.5E-08 47.5 1.9 35 566-600 13-47 (50)
259 2i9a_A Urokinase-type plasmino 96.8 0.0017 5.8E-08 56.1 5.7 58 521-597 14-74 (145)
260 1ob1_C Major merozoite surface 96.7 0.0019 6.6E-08 50.6 5.0 68 439-506 7-83 (99)
261 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00093 3.2E-08 61.0 3.1 83 217-299 71-168 (197)
262 1q4g_A Prostaglandin G/H synth 96.6 0.00085 2.9E-08 71.6 3.3 38 514-551 2-41 (553)
263 1g1s_A P-selectin; selectin, l 96.6 0.00073 2.5E-08 60.1 2.1 36 438-473 121-156 (162)
264 2jkh_L Factor X light chain; p 96.6 0.0011 3.8E-08 46.8 2.5 40 475-517 2-45 (55)
265 2kl7_A Fibulin-4; secreted, ca 96.5 0.0016 5.5E-08 48.7 3.3 36 473-508 2-38 (71)
266 1apq_A Complement protease C1R 96.4 0.002 6.9E-08 45.0 3.0 31 435-467 3-43 (53)
267 3nt1_A Prostaglandin-endoperox 96.4 0.0017 5.8E-08 69.3 3.7 38 514-551 1-40 (587)
268 1ob1_C Major merozoite surface 96.3 0.0055 1.9E-07 48.0 5.3 67 400-466 7-83 (99)
269 1n1i_A Merozoite surface prote 96.2 0.0095 3.3E-07 47.0 6.3 68 439-506 13-84 (105)
270 2kl7_A Fibulin-4; secreted, ca 96.2 0.0027 9.2E-08 47.4 2.9 35 434-468 1-38 (71)
271 4aqt_A Laminin subunit gamma-1 96.1 0.0021 7.1E-08 64.8 2.8 41 366-406 257-298 (375)
272 1gl4_A Nidogen-1, entactin; im 96.1 0.0014 4.7E-08 62.7 1.3 37 513-549 4-44 (285)
273 1q4g_A Prostaglandin G/H synth 96.1 0.0024 8.1E-08 68.1 3.0 39 436-474 2-42 (553)
274 3nt1_A Prostaglandin-endoperox 95.9 0.003 1E-07 67.4 3.0 38 359-396 2-40 (587)
275 1kli_L Factor VIIA; extrinsic 95.7 0.0055 1.9E-07 45.4 2.5 42 473-517 4-50 (69)
276 2i9a_A Urokinase-type plasmino 95.6 0.012 4.1E-07 50.7 5.0 59 365-433 14-74 (145)
277 1gl4_A Nidogen-1, entactin; im 95.6 0.0021 7.1E-08 61.5 0.1 33 474-506 5-37 (285)
278 1xdt_R Hbegf, heparin-binding 95.5 0.006 2E-07 45.8 2.1 35 515-550 38-77 (79)
279 1kig_L Factor XA; glycoprotein 95.5 0.0067 2.3E-07 41.9 2.3 33 482-517 6-42 (51)
280 2jkh_L Factor X light chain; p 95.5 0.0058 2E-07 43.0 2.0 34 515-550 2-41 (55)
281 4aqt_A Laminin subunit gamma-1 95.4 0.011 3.6E-07 59.6 4.6 30 483-512 256-287 (375)
282 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0028 9.7E-08 57.8 0.2 82 217-298 42-136 (197)
283 3cfw_A L-selectin; EGF, cell a 95.4 0.011 3.7E-07 52.4 4.0 34 517-550 122-155 (164)
284 1n1i_A Merozoite surface prote 95.4 0.042 1.4E-06 43.3 6.7 67 399-466 12-84 (105)
285 2y38_A Laminin subunit alpha-5 95.2 0.042 1.4E-06 55.6 8.0 20 534-553 356-376 (403)
286 3e50_C Protransforming growth 95.2 0.016 5.3E-07 39.6 3.3 30 520-550 14-45 (50)
287 1iox_A Betacellulin; EGF-like 95.1 0.015 5.1E-07 39.8 3.0 32 363-395 13-45 (50)
288 2p26_A Integrin beta-2; hybrid 95.1 0.011 3.7E-07 56.9 3.1 59 484-550 198-275 (280)
289 2rnl_A Amphiregulin; AR, color 95.0 0.02 6.8E-07 39.1 3.4 30 520-550 18-49 (50)
290 3cfw_A L-selectin; EGF, cell a 95.0 0.012 4.2E-07 52.1 3.1 38 439-477 122-159 (164)
291 1szb_A Mannose binding lectin- 94.7 0.0079 2.7E-07 53.8 1.1 40 503-544 113-157 (170)
292 2y38_A Laminin subunit alpha-5 94.7 0.051 1.7E-06 55.0 7.1 19 581-599 355-374 (403)
293 1g1t_A E-selectin; EGF, adhesi 94.7 0.011 3.9E-07 51.8 2.0 36 515-550 120-155 (157)
294 1g1t_A E-selectin; EGF, adhesi 94.7 0.0069 2.4E-07 53.2 0.6 35 438-472 121-155 (157)
295 2ygo_A WIF-1, WNT inhibitory f 94.6 0.02 6.8E-07 50.8 3.4 27 568-599 154-181 (188)
296 1kli_L Factor VIIA; extrinsic 94.4 0.018 6.2E-07 42.5 2.3 37 512-550 3-46 (69)
297 3asi_A Neurexin-1-alpha; beta- 94.2 0.035 1.2E-06 57.2 4.9 40 470-511 181-221 (410)
298 2bz6_L Blood coagulation facto 94.0 0.022 7.4E-07 39.7 1.9 33 482-517 7-44 (53)
299 2ygo_A WIF-1, WNT inhibitory f 93.4 0.047 1.6E-06 48.4 3.3 30 361-395 151-180 (188)
300 2p26_A Integrin beta-2; hybrid 93.2 0.049 1.7E-06 52.3 3.4 67 522-598 198-275 (280)
301 1szb_A Mannose binding lectin- 92.7 0.028 9.5E-07 50.1 0.8 40 425-466 113-157 (170)
302 3asi_A Neurexin-1-alpha; beta- 92.5 0.085 2.9E-06 54.3 4.4 43 391-434 179-222 (410)
303 1kig_L Factor XA; glycoprotein 91.3 0.054 1.8E-06 37.3 0.9 28 521-550 7-38 (51)
304 2bz6_L Blood coagulation facto 91.2 0.1 3.4E-06 36.2 2.1 28 521-550 8-40 (53)
305 2lz0_A Uncharacterized protein 90.5 0.49 1.7E-05 37.7 5.9 50 225-275 5-54 (100)
306 3qcw_A Neurexin-1-alpha; synap 90.0 0.19 6.5E-06 59.5 4.4 42 510-551 1013-1055(1245)
307 1nzi_A Complement C1S componen 89.5 0.11 3.8E-06 45.5 1.5 39 504-544 107-148 (159)
308 2e26_A Reelin, reeler protein; 88.9 0.095 3.2E-06 56.5 0.6 44 460-511 521-564 (725)
309 3qcw_A Neurexin-1-alpha; synap 88.9 0.26 8.9E-06 58.4 4.4 43 432-474 1013-1056(1245)
310 2wph_E Coagulation factor IXA 88.7 0.34 1.2E-05 34.3 3.3 28 521-550 8-40 (59)
311 2e26_A Reelin, reeler protein; 88.6 0.055 1.9E-06 58.3 -1.4 46 538-600 521-567 (725)
312 1b9w_A Protein (merozoite surf 86.3 1.7 5.9E-05 33.2 6.0 67 439-505 7-78 (95)
313 2wph_E Coagulation factor IXA 82.0 0.59 2E-05 33.1 1.8 28 482-511 7-39 (59)
314 1nzi_A Complement C1S componen 81.4 0.48 1.6E-05 41.3 1.4 31 434-466 115-148 (159)
315 1b9w_A Protein (merozoite surf 80.2 4.6 0.00016 30.9 6.1 67 400-466 7-79 (95)
316 2lz0_A Uncharacterized protein 74.6 2.8 9.6E-05 33.2 3.9 53 249-302 5-58 (100)
317 3fby_A COMP, cartilage oligome 71.3 4 0.00014 42.4 5.0 26 520-545 27-53 (551)
318 3v64_C Agrin; beta propeller, 70.1 1.5 5.2E-05 43.6 1.7 29 475-506 2-30 (349)
319 3f1s_B Vitamin K-dependent pro 63.7 3.1 0.0001 40.0 2.3 18 449-466 16-33 (283)
320 3fl7_A Ephrin receptor; ATP-bi 58.8 3.1 0.00011 44.0 1.4 13 581-593 308-320 (536)
321 3v64_C Agrin; beta propeller, 57.1 2.9 9.8E-05 41.6 0.8 28 436-465 1-29 (349)
322 3f1s_B Vitamin K-dependent pro 56.7 3.9 0.00013 39.3 1.7 31 474-506 2-33 (283)
323 1ijq_A LDL receptor, low-densi 49.4 12 0.00041 36.3 3.9 22 521-544 279-306 (316)
324 3t5o_A Complement component C6 42.5 18 0.00063 40.9 4.5 38 359-397 498-535 (913)
325 3t5o_A Complement component C6 42.5 13 0.00044 42.2 3.2 50 473-526 496-545 (913)
326 3fby_A COMP, cartilage oligome 39.3 13 0.00044 38.7 2.3 32 363-394 26-59 (551)
327 3sov_A LRP-6, low-density lipo 33.6 31 0.001 33.5 4.0 22 521-544 276-299 (318)
328 2pe4_A Hyaluronidase-1; hyalur 30.1 20 0.00069 35.9 1.9 20 581-600 395-414 (424)
329 4a0p_A LRP6, LRP-6, low-densit 27.0 28 0.00097 37.5 2.6 33 473-507 264-297 (628)
330 3fl7_A Ephrin receptor; ATP-bi 27.0 35 0.0012 35.9 3.2 56 366-430 252-321 (536)
331 2ddu_A Reelin; beta-jelly-roll 26.1 17 0.00057 36.2 0.5 21 483-507 197-217 (387)
332 1ijq_A LDL receptor, low-densi 24.9 40 0.0014 32.4 3.1 12 495-506 295-306 (316)
333 4a0p_A LRP6, LRP-6, low-densit 24.1 35 0.0012 36.8 2.7 35 432-468 261-298 (628)
334 3t3p_B Integrin beta-3; integr 23.7 22 0.00076 36.4 0.9 14 584-597 459-472 (472)
335 3s94_A LRP-6, low-density lipo 23.0 26 0.00088 37.8 1.3 29 514-544 578-608 (619)
336 3t3p_B Integrin beta-3; integr 22.0 38 0.0013 34.7 2.2 14 536-549 459-472 (472)
337 3sov_A LRP-6, low-density lipo 21.8 53 0.0018 31.7 3.2 18 489-506 280-299 (318)
No 1
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=100.00 E-value=8.1e-37 Score=293.32 Aligned_cols=213 Identities=33% Similarity=0.634 Sum_probs=198.8
Q ss_pred CCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407 85 DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164 (604)
Q Consensus 85 ~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 164 (604)
...||..|.|.++.|+|++++|++||..++..+++|+|++|+|+.|++. .|..+++|++|+|++|+|+.+.+.+|.++.
T Consensus 2 ~~~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 80 (220)
T 2v9t_B 2 SLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLR 80 (220)
T ss_dssp CCCSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSCCCEECTTTTTTCS
T ss_pred CCCCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCcCCCcCHHHhhCCc
Confidence 3579999999999999999999999999999999999999999999874 499999999999999999999999998875
Q ss_pred cCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCe
Q psy15407 165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQ 244 (604)
Q Consensus 165 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~ 244 (604)
+|++|+|++|+|+.+++..|..+++|++
T Consensus 81 ----------------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 81 ----------------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp ----------------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ----------------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 7888999999999999999999999999
Q ss_pred EEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCccc
Q psy15407 245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIAR 324 (604)
Q Consensus 245 L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~ 324 (604)
|+|++|+|+.+++.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|||.+.||..|++.........+
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~ 188 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGAR 188 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCB
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987777667789
Q ss_pred cCCCCcccccccccCCCCceeecCcc
Q psy15407 325 CTEPASMRDKLLLTAPASSFQCKEKV 350 (604)
Q Consensus 325 C~~P~~l~g~~l~~~~~~~~~C~~~~ 350 (604)
|+.|..++|+.+.+++.++|.|.-+.
T Consensus 189 C~~P~~l~g~~l~~l~~~~~~c~~~~ 214 (220)
T 2v9t_B 189 CTSPRRLANKRIGQIKSKKFRCSAAA 214 (220)
T ss_dssp EEESGGGTTCBGGGSCGGGCCC----
T ss_pred cCCchHHcCCchhhCCHHHCcCcccc
Confidence 99999999999999999999997543
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=288.42 Aligned_cols=213 Identities=37% Similarity=0.761 Sum_probs=199.1
Q ss_pred CCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCccc
Q psy15407 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165 (604)
Q Consensus 86 ~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 165 (604)
..||..|+|.++.|+|++++|++||..++..+++|+|++|+|+.+++.++|..+++|++|+|++|+|+.+++.+|.++.
T Consensus 3 ~~CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~- 81 (220)
T 2v70_A 3 LACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS- 81 (220)
T ss_dssp -CCCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-
T ss_pred CCCCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-
Confidence 5799999999999999999999999999999999999999999997656799999999999999999999999998875
Q ss_pred CCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeE
Q psy15407 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQL 245 (604)
Q Consensus 166 L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L 245 (604)
+|++|+|++|+|+.+++..|..+++|++|
T Consensus 82 ---------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 82 ---------------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp ---------------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred ---------------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 78889999999999999999999999999
Q ss_pred EecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCcccc
Q psy15407 246 ILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARC 325 (604)
Q Consensus 246 ~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C 325 (604)
+|++|+|+.+++.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|.+.||.+|++......+...|
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C 190 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRC 190 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCcc
Confidence 99999999999999999999999999999999999889999999999999999999999999999999877666777899
Q ss_pred CCCCcccccccccCCCCceeecCcc
Q psy15407 326 TEPASMRDKLLLTAPASSFQCKEKV 350 (604)
Q Consensus 326 ~~P~~l~g~~l~~~~~~~~~C~~~~ 350 (604)
..|..++|+.+.+++...+.|....
T Consensus 191 ~~P~~l~g~~l~~l~~~~~~~~~~~ 215 (220)
T 2v70_A 191 QKPYFLKEIPIQDVAIQDFTCDDAH 215 (220)
T ss_dssp EESGGGTTEEGGGSCGGGCCCCC--
T ss_pred CCChHHCCCChhhCCHHHccccccc
Confidence 9999999999999999999887643
No 3
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=294.98 Aligned_cols=264 Identities=27% Similarity=0.467 Sum_probs=210.7
Q ss_pred CCCCCCCCeeCC--CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCC
Q psy15407 85 DAACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162 (604)
Q Consensus 85 ~~~CP~~C~C~~--~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 162 (604)
...||..|.|.. ..|+|++++|++||..++..++.|+|++|+|+.+++. .|.++++|++|+|++|+|+.+++.+|.+
T Consensus 32 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 32 AQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNG 110 (440)
T ss_dssp -CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred cccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccC
Confidence 457999999974 6899999999999999999999999999999999864 4899999999999999999999889999
Q ss_pred cccCCcCCCCCCCCC--------ccccccEEEccCCccccc---------------ccc-c--------cceeee-----
Q psy15407 163 ENDQGCLGDNYCPPK--------CTCTVRVLFYDGRAGECY---------------IAV-E--------LFSSRI----- 205 (604)
Q Consensus 163 l~~L~~L~l~~~~~~--------~~~~l~~l~~~~~~~~~~---------------~~~-~--------~~~~~~----- 205 (604)
+++|+.|+|++|.+. .+..|+.+.+..+..... +.. + .+....
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 999999988887433 334566666654432211 100 0 000000
Q ss_pred -----eeccccC-CccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407 206 -----RVSYYVG-NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279 (604)
Q Consensus 206 -----~~~~~~~-~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i 279 (604)
.+..+.. ....+|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+.+.+|..+++|+.|+|++|+|+.+
T Consensus 191 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp ECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred cCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 0000000 1123788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCcccceeeeccCCCcccccCCCcccccccccccc--CCccccCCCCcccccccccCCCCceeecCc
Q psy15407 280 PEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVE--PGIARCTEPASMRDKLLLTAPASSFQCKEK 349 (604)
Q Consensus 280 ~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~--~~~~~C~~P~~l~g~~l~~~~~~~~~C~~~ 349 (604)
++..|..+++|+.|+|++|||.|||++.||..|++..... ....+|..|+.++|+.+.++....|.|..+
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P 342 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 342 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCC
T ss_pred ChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCC
Confidence 9999999999999999999999999999999999865332 334789999999999999999999999754
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=1.9e-32 Score=292.46 Aligned_cols=264 Identities=30% Similarity=0.481 Sum_probs=214.4
Q ss_pred CCCCCCCCeeCC--CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCC
Q psy15407 85 DAACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162 (604)
Q Consensus 85 ~~~CP~~C~C~~--~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 162 (604)
...||..|.|.. +.|+|++++|++||..+|..++.|+|++|+|+.+++. .|.++++|++|+|++|+|+.+.+.+|.+
T Consensus 43 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 43 PQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp -CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccC
Confidence 457999999974 6899999999999999999999999999999999764 4899999999999999999999999999
Q ss_pred cccCCcCCCCCCCCC--------ccccccEEEccCCccccccc---------------c-c--------cceee------
Q psy15407 163 ENDQGCLGDNYCPPK--------CTCTVRVLFYDGRAGECYIA---------------V-E--------LFSSR------ 204 (604)
Q Consensus 163 l~~L~~L~l~~~~~~--------~~~~l~~l~~~~~~~~~~~~---------------~-~--------~~~~~------ 204 (604)
+++|+.|+|++|.+. .+..|+.+.+..+....... . + .+...
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 999999999887532 34456666666543221110 0 0 00000
Q ss_pred ----eeeccccC-CccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407 205 ----IRVSYYVG-NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279 (604)
Q Consensus 205 ----~~~~~~~~-~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i 279 (604)
..+..+.. ....+|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+.+.+|..+++|+.|+|++|+|+.+
T Consensus 202 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp ECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 00000000 0113788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCcccceeeeccCCCcccccCCCccccccccccc--cCCccccCCCCcccccccccCCCCceeecCc
Q psy15407 280 PEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV--EPGIARCTEPASMRDKLLLTAPASSFQCKEK 349 (604)
Q Consensus 280 ~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~--~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~~ 349 (604)
++..|..+++|+.|+|++|||.|||++.||..|++.... .....+|+.|..++|+.+..+....|.|..+
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P 353 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAP 353 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCC
T ss_pred ChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCc
Confidence 999999999999999999999999999999999976432 2234689999999999999999999999754
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=100.00 E-value=1.9e-32 Score=274.14 Aligned_cols=258 Identities=24% Similarity=0.347 Sum_probs=218.1
Q ss_pred CCCCCCeeCC---CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407 87 ACPSGCSCDG---TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE 163 (604)
Q Consensus 87 ~CP~~C~C~~---~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l 163 (604)
+||..|.|.. +.|+|++++|+.||..++..+++|+|++|.|+.+++. .|..+++|++|+|++|+|+.+.+.+|.++
T Consensus 1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 4999999964 5799999999999999999999999999999999874 48999999999999999999999999999
Q ss_pred ccCCcCCCCCCC-CC--------ccccccEEEccCCcccccccc------cc---ceeeeeeccccC---Cccccceeec
Q psy15407 164 NDQGCLGDNYCP-PK--------CTCTVRVLFYDGRAGECYIAV------EL---FSSRIRVSYYVG---NYPVSTMYRD 222 (604)
Q Consensus 164 ~~L~~L~l~~~~-~~--------~~~~l~~l~~~~~~~~~~~~~------~~---~~~~~~~~~~~~---~~~~~L~~L~ 222 (604)
++|+.|++++|. .. .+..++.+.+..+........ ++ ......+..+.. ....+|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 999999999985 32 235677777776543222110 00 001111111111 1124899999
Q ss_pred CCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 223 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
|++|+|+.+++..|..+++|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|||.|
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 99999999999899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred ccCCCccccccccccccCCccccCCCCcccccccccCCCCcee
Q psy15407 303 DCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345 (604)
Q Consensus 303 dC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~ 345 (604)
+|.+.|+.+|++..........|..|..++|+.+.++...+|.
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~ 282 (285)
T 1ozn_A 240 DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282 (285)
T ss_dssp SGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSC
T ss_pred CCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhc
Confidence 9999999999988777777789999999999999999887776
No 6
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.97 E-value=3.7e-32 Score=255.06 Aligned_cols=186 Identities=51% Similarity=0.986 Sum_probs=159.0
Q ss_pred CCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCccc
Q psy15407 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165 (604)
Q Consensus 86 ~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 165 (604)
..||..|.|.++.|+|++++|++||..++..+++|+|++|.|+.|+. .|.++++|++|+|++|+|+.+++.+|.
T Consensus 2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~---- 75 (193)
T 2wfh_A 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFS---- 75 (193)
T ss_dssp --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSSCCCCCCTTTTT----
T ss_pred CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHH--HhhcccCCCEEECCCCcCCEeCHhHcc----
Confidence 46999999999999999999999999999999999999999998874 388888888888888887777665554
Q ss_pred CCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeE
Q psy15407 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQL 245 (604)
Q Consensus 166 L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L 245 (604)
++++|++|
T Consensus 76 ------------------------------------------------------------------------~l~~L~~L 83 (193)
T 2wfh_A 76 ------------------------------------------------------------------------NMTQLLTL 83 (193)
T ss_dssp ------------------------------------------------------------------------TCTTCCEE
T ss_pred ------------------------------------------------------------------------CCCCCCEE
Confidence 45567777
Q ss_pred EecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCcccc
Q psy15407 246 ILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARC 325 (604)
Q Consensus 246 ~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C 325 (604)
+|++|+|+.+++.+|..+++|++|+|++|+|+.+++.+|..+++|+.|+|++|||.|||.+.||..|++......+...|
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C 163 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARC 163 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBE
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCc
Confidence 77777777777778888888888888889999888888999999999999999999999999999999887777777899
Q ss_pred CCCCcccccccccCCCCceeecCc
Q psy15407 326 TEPASMRDKLLLTAPASSFQCKEK 349 (604)
Q Consensus 326 ~~P~~l~g~~l~~~~~~~~~C~~~ 349 (604)
+.|..++|+.+.+++...+.|...
T Consensus 164 ~~P~~l~g~~l~~~~~~~~~~~~~ 187 (193)
T 2wfh_A 164 AGPGEMADKLLLTTPSKKFTCAAA 187 (193)
T ss_dssp EESGGGTTCBTTTSCGGGCCC---
T ss_pred CCchHHCCCCcccCChHHeeehhh
Confidence 999999999999999999988654
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.97 E-value=2.8e-31 Score=249.08 Aligned_cols=189 Identities=50% Similarity=0.949 Sum_probs=158.9
Q ss_pred CCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ 166 (604)
Q Consensus 87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 166 (604)
.||..|.|.++.|+|++++|++||..++..+++|+|++|+|+.+++.++|..+++|++|+|++|+|+.+.+.+|.
T Consensus 1 ~CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----- 75 (192)
T 1w8a_A 1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE----- 75 (192)
T ss_dssp CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-----
T ss_pred CcCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-----
Confidence 499999999999999999999999999889999999999998887655578888888888888877776665554
Q ss_pred CcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEE
Q psy15407 167 GCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLI 246 (604)
Q Consensus 167 ~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~ 246 (604)
.+++|++|+
T Consensus 76 -----------------------------------------------------------------------~l~~L~~L~ 84 (192)
T 1w8a_A 76 -----------------------------------------------------------------------GASHIQELQ 84 (192)
T ss_dssp -----------------------------------------------------------------------TCTTCCEEE
T ss_pred -----------------------------------------------------------------------CcccCCEEE
Confidence 455666677
Q ss_pred ecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCccccC
Q psy15407 247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCT 326 (604)
Q Consensus 247 Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~ 326 (604)
|++|+|+.+++.+|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|.|+|.+.|+..|++..........|.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG 164 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCC
Confidence 77777777777777777888888888888888777778888999999999999999999999999998776666778999
Q ss_pred CCCcccccccccCCCCceeecCccc
Q psy15407 327 EPASMRDKLLLTAPASSFQCKEKVS 351 (604)
Q Consensus 327 ~P~~l~g~~l~~~~~~~~~C~~~~~ 351 (604)
.|..++|+.+.+++..+|.|.+..+
T Consensus 165 ~P~~l~~~~l~~l~~~~~~C~~~~~ 189 (192)
T 1w8a_A 165 APSKVRDVQIKDLPHSEFKCSSENS 189 (192)
T ss_dssp SSTTTTTSBGGGSCTTTCCCCCC--
T ss_pred CChHHcCCChhhCcHhhcCcCCCCC
Confidence 9999999999999999999986543
No 8
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.97 E-value=8.5e-31 Score=271.07 Aligned_cols=231 Identities=25% Similarity=0.418 Sum_probs=193.9
Q ss_pred CCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccC-CCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407 85 DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFG-RLPNLIKLDLRRNQVTGIEDNAFEGE 163 (604)
Q Consensus 85 ~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~l 163 (604)
...||..|.|..+.|+|++++|+.||..++..++.|+|++|+|+.+++. .|. ++++|++|+|++|+|+.+++.+|.++
T Consensus 9 ~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 9 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp CTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCC
Confidence 4679999999999999999999999999999999999999999999875 477 99999999999999999999999999
Q ss_pred ccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCC
Q psy15407 164 NDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLS 243 (604)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~ 243 (604)
++|+.|+|++|.+..+.. ..... ..+|++|+|++|+|+.+++..|..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~---------------------------~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDE---------------------------FLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp TTCCEEECCSSCCCEECT---------------------------TTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCcCCcCCH---------------------------HHhCC-CcCCCEEECCCCcccEECHHHhCCcccCC
Confidence 999999999876432110 00011 13899999999999999999999999999
Q ss_pred eEEecCCcceeeecccc---CCCCcccEEEccCCccccCCcccccCccc--ceeeeccCCCcccccCCCcc-cccccccc
Q psy15407 244 QLILSYNKLQCIDRDAL---AGLKSLRIISLHGNDISMIPEGAFADLHA--ITHLAIGGNPLYCDCGLAWL-SEWVKRDY 317 (604)
Q Consensus 244 ~L~Ls~N~l~~i~~~~f---~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~--L~~L~L~~Npl~CdC~l~~l-~~~~~~~~ 317 (604)
.|+|++|+|+.++...| ..+++|+.|+|++|+|+.++...|..++. |+.|+|++|||.|||++.|+ ..|+....
T Consensus 140 ~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~ 219 (361)
T 2xot_A 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQL 219 (361)
T ss_dssp EEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTC
T ss_pred EEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcC
Confidence 99999999999998888 56999999999999999999888888887 48899999999999999885 56775432
Q ss_pred c----cCCccccCCCCcccccccccCCCCceeecC
Q psy15407 318 V----EPGIARCTEPASMRDKLLLTAPASSFQCKE 348 (604)
Q Consensus 318 ~----~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~ 348 (604)
. ......|..|..+.+.. .+. .+.|..
T Consensus 220 ~~~~~~~~~~~C~~p~~~~~~~--~~~--~~~C~~ 250 (361)
T 2xot_A 220 SSVMDFQEDLYCMHSKKLHNIF--SLD--FFNCSE 250 (361)
T ss_dssp HHHHTTGGGCEEESSSCCEEGG--GCC--CTTCCS
T ss_pred CchhccCcCCEeCCChHHcCcc--ccc--cccCCC
Confidence 1 23457899998776532 222 566754
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.97 E-value=6.4e-30 Score=253.52 Aligned_cols=239 Identities=26% Similarity=0.412 Sum_probs=197.8
Q ss_pred CCCCeeC--CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407 89 PSGCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ 166 (604)
Q Consensus 89 P~~C~C~--~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 166 (604)
+..|.|. .+.|+|++++|+.||..+|..+++|+|++|+|+.+++. .|.++++|++|+|++|+|+.+++.+|.++++|
T Consensus 9 ~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 9 GGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp TCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred CCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence 5678885 47899999999999999999999999999999999874 49999999999999999999999999999999
Q ss_pred CcCCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCC
Q psy15407 167 GCLGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSP 238 (604)
Q Consensus 167 ~~L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~ 238 (604)
+.|++++|.+..+ ..++.+.+..+.. ..... ..... ..+|++|+|++|+|+.+++..|..
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------~~~~~--~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL---------KSLPP--RVFDS-LTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCC---------CCCCT--TTTTT-CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCcc---------CeeCH--HHhCc-CcCCCEEECCCCcCCccCHhHccC
Confidence 9999999865432 2344444433321 11110 01112 238999999999999999999999
Q ss_pred CCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccccc
Q psy15407 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDY 317 (604)
Q Consensus 239 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~ 317 (604)
+++|++|+|++|+|+.+++.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|. +.|+.+|++...
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~ 235 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKA 235 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHH
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 788999987543
Q ss_pred c----cCCccccCCCCcccccccccCCCCce
Q psy15407 318 V----EPGIARCTEPASMRDKLLLTAPASSF 344 (604)
Q Consensus 318 ~----~~~~~~C~~P~~l~g~~l~~~~~~~~ 344 (604)
. ......|.. .|+.+.++...++
T Consensus 236 ~~~~~~~~~~~C~~----~~~~~~~~~~~~~ 262 (270)
T 2o6q_A 236 DEGLGGVDTAGCEK----GGKAVLEITEKDA 262 (270)
T ss_dssp HTTCSSTTCCBBSS----SCSBGGGCCTTTT
T ss_pred cccccCccccccCC----CCeEeEEecchhh
Confidence 2 233466764 3677777766553
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.97 E-value=5.4e-30 Score=251.22 Aligned_cols=201 Identities=28% Similarity=0.484 Sum_probs=180.1
Q ss_pred CCCCC--Cee--CCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCC
Q psy15407 87 ACPSG--CSC--DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162 (604)
Q Consensus 87 ~CP~~--C~C--~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 162 (604)
.||.. |+| ..+.|+|++++|++||..++..++.|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|..
T Consensus 3 ~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 81 (251)
T 3m19_A 3 TCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDD 81 (251)
T ss_dssp -CHHHHSSEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cCCCCCceEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhcc
Confidence 58887 999 357899999999999999999999999999999999874 4999999999999999999999999999
Q ss_pred cccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCC
Q psy15407 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKL 242 (604)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L 242 (604)
+++|+.|+|++|.+..+.. ..... ..+|++|+|++|+|+.+++..|..+++|
T Consensus 82 l~~L~~L~L~~n~l~~~~~---------------------------~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPL---------------------------GVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp CTTCCEEECTTSCCCCCCT---------------------------TTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCcCCEEECCCCcccccCh---------------------------hHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 9999999999876442110 00011 2389999999999999999999999999
Q ss_pred CeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccc-cCCCccccccccc
Q psy15407 243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD-CGLAWLSEWVKRD 316 (604)
Q Consensus 243 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~Cd-C~l~~l~~~~~~~ 316 (604)
++|+|++|+|+.+++.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|.|+ |.+.|+..|++..
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999998754
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.8e-30 Score=257.39 Aligned_cols=251 Identities=24% Similarity=0.363 Sum_probs=191.9
Q ss_pred CCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecC--CCcCCCccc
Q psy15407 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE--DNAFEGEND 165 (604)
Q Consensus 88 CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~l~~ 165 (604)
||..|.|.++.|+|++++|++||..++..+++|+|++|+|+.++. .+|.++++|++|+|++|+|+.+. +.++.++++
T Consensus 1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCH-hHhhccccCCEEECCCCccCcccCcccccccccc
Confidence 899999999999999999999999999999999999999999986 45899999999999999987653 233334444
Q ss_pred CCcCCCCCCCC--------------------------------CccccccEEEccCCcccccccc------cc---ceee
Q psy15407 166 QGCLGDNYCPP--------------------------------KCTCTVRVLFYDGRAGECYIAV------EL---FSSR 204 (604)
Q Consensus 166 L~~L~l~~~~~--------------------------------~~~~~l~~l~~~~~~~~~~~~~------~~---~~~~ 204 (604)
|+.|++++|.+ ..+..++.+.+..+........ .+ ....
T Consensus 80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 55555444421 1223444444443322111100 00 0000
Q ss_pred eee-----ccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407 205 IRV-----SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279 (604)
Q Consensus 205 ~~~-----~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i 279 (604)
..+ ....... .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.+
T Consensus 160 n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 160 NSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CccccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 111 1111222 3789999999999999888999999999999999999999888899999999999999999998
Q ss_pred CcccccCcc-cceeeeccCCCcccccCCCcccccccccc---ccCCccccCCCCcccccccccCC
Q psy15407 280 PEGAFADLH-AITHLAIGGNPLYCDCGLAWLSEWVKRDY---VEPGIARCTEPASMRDKLLLTAP 340 (604)
Q Consensus 280 ~~~~f~~l~-~L~~L~L~~Npl~CdC~l~~l~~~~~~~~---~~~~~~~C~~P~~l~g~~l~~~~ 340 (604)
++..|..++ +|+.|+|++|+|.|+|.+.||.+|++... ......+|..|..++|..+.++.
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~ 303 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 303 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred CHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeec
Confidence 888888884 89999999999999999999999987543 24456899999999999988774
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=270.29 Aligned_cols=260 Identities=25% Similarity=0.420 Sum_probs=198.3
Q ss_pred CCCCCCeeCC--CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407 87 ACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164 (604)
Q Consensus 87 ~CP~~C~C~~--~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 164 (604)
.||..|.|.. +.|+|++++|++||..+|..++.|+|++|+|+.+++. .|.++++|++|+|++|+|+.+.+.+|.+++
T Consensus 2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 6999999964 6899999999999999999999999999999999764 378888888888888888887777777777
Q ss_pred cCCcCCCCCCCCC--------ccccccEEEccCCccc---------------------------------------cccc
Q psy15407 165 DQGCLGDNYCPPK--------CTCTVRVLFYDGRAGE---------------------------------------CYIA 197 (604)
Q Consensus 165 ~L~~L~l~~~~~~--------~~~~l~~l~~~~~~~~---------------------------------------~~~~ 197 (604)
+|+.|+|++|.+. .+..|+.+.+..+... +.+.
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 7777777665321 1223333333221100 0000
Q ss_pred cccce------------------------ee-------------e-----------------------------eeccc-
Q psy15407 198 VELFS------------------------SR-------------I-----------------------------RVSYY- 210 (604)
Q Consensus 198 ~~~~~------------------------~~-------------~-----------------------------~~~~~- 210 (604)
.+.+. .. . .+..+
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 00000 00 0 00000
Q ss_pred ---cCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCc
Q psy15407 211 ---VGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADL 287 (604)
Q Consensus 211 ---~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 287 (604)
... ..+|++|+|++|.|+.+++..|..+++|++|+|++|+|+.+.+.+|..+++|+.|+|++|+|+.+++..|..+
T Consensus 241 ~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 241 YLAVRH-LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp HHHHTT-CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred HHHhcC-ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 011 1368889999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccCCCcccccCCCccccccccccccCCccccCCCCcccccccccCCC----CceeecC
Q psy15407 288 HAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA----SSFQCKE 348 (604)
Q Consensus 288 ~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~----~~~~C~~ 348 (604)
++|+.|+|++|||.|||.+.|+.+|............|..|..++|+.+.+++. ..|.|..
T Consensus 320 ~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~ 384 (477)
T 2id5_A 320 GNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRR 384 (477)
T ss_dssp GGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEE
T ss_pred cccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEecc
Confidence 999999999999999999999998876655555668999999999999887653 3466653
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.96 E-value=1e-28 Score=238.36 Aligned_cols=199 Identities=33% Similarity=0.603 Sum_probs=173.9
Q ss_pred CCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ 166 (604)
Q Consensus 87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 166 (604)
.-...|.|.++.|+|++++|++||..++..+++|+|++|.|+.+.+. .|..+++|++|+|++|+|+.+++.+|.+++
T Consensus 12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-- 88 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVGVFDSLT-- 88 (229)
T ss_dssp CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCT--
T ss_pred cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChhhcccCC--
Confidence 34678999999999999999999999999999999999999999764 499999999999999999999999888775
Q ss_pred CcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEE
Q psy15407 167 GCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLI 246 (604)
Q Consensus 167 ~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~ 246 (604)
+|++|+|++|+|+.+++..|..+++|++|+
T Consensus 89 --------------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 89 --------------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred --------------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 788899999999999999999999999999
Q ss_pred ecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccccc--------
Q psy15407 247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDY-------- 317 (604)
Q Consensus 247 Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~-------- 317 (604)
|++|+|+.| +..+..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|. +.|+..|+....
T Consensus 119 Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g 197 (229)
T 3e6j_A 119 MCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDG 197 (229)
T ss_dssp CCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESS
T ss_pred ccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccC
Confidence 999999988 4567899999999999999999999999999999999999999999996 899999986432
Q ss_pred ---ccCCccccCCCCcccccccccCCCCc
Q psy15407 318 ---VEPGIARCTEPASMRDKLLLTAPASS 343 (604)
Q Consensus 318 ---~~~~~~~C~~P~~l~g~~l~~~~~~~ 343 (604)
.......|+.| |+.+..+...+
T Consensus 198 ~~v~~~~~~~C~~~----~~~~~~~~~~~ 222 (229)
T 3e6j_A 198 KAVNDPDSAKCAGT----NTPVRAVTEAS 222 (229)
T ss_dssp SEEECTTCSBBTTT----CCBGGGCCGGG
T ss_pred cccCCCCcCccCCC----Cccceeccccc
Confidence 13345667776 44455444333
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=227.51 Aligned_cols=175 Identities=33% Similarity=0.633 Sum_probs=163.3
Q ss_pred CCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCC
Q psy15407 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQG 167 (604)
Q Consensus 88 CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 167 (604)
||..|.|.++.|+|++++++++|..++..+++|+|++|+|+.+++. +|..+++|++|+|++|+|+.+++..|..++
T Consensus 1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--- 76 (208)
T 2o6s_A 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLT--- 76 (208)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCT---
T ss_pred CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccCccChhhcCCCC---
Confidence 8999999999999999999999999999999999999999999874 589999999999999999999988887764
Q ss_pred cCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407 168 CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLIL 247 (604)
Q Consensus 168 ~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L 247 (604)
+|++|+|++|+|+.+++..|..+++|++|+|
T Consensus 77 -------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 77 -------------------------------------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp -------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -------------------------------------------------CcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 7888999999999999989999999999999
Q ss_pred cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccc
Q psy15407 248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKR 315 (604)
Q Consensus 248 s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~ 315 (604)
++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|.|+|. +.++..|...
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 176 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHH
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999989999999999999999999997 7777666543
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=1.6e-27 Score=238.45 Aligned_cols=212 Identities=22% Similarity=0.304 Sum_probs=173.3
Q ss_pred CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP 175 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~ 175 (604)
.+.|+|++++|++||..++..++.|+|++|.|+.+++. .|..+++|++|+|++|+|+.+++. ..+++|+.|++++|.
T Consensus 12 l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ 88 (290)
T ss_dssp CCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSC
T ss_pred ccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCc
Confidence 48999999999999999999999999999999999764 499999999999999999999774 789999999999997
Q ss_pred CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee
Q psy15407 176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255 (604)
Q Consensus 176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i 255 (604)
+..+... +.....+..+.+..+.+..... .....+ .+|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.+
T Consensus 89 l~~l~~~--~~~l~~L~~L~l~~N~l~~l~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 89 LQSLPLL--GQTLPALTVLDVSFNRLTSLPL--GALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCCC--TTTCTTCCEEECCSSCCCCCCS--STTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCcCchh--hccCCCCCEEECCCCcCcccCH--HHHcCC-CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 6543320 0001112222222222221110 011122 3899999999999999999999999999999999999999
Q ss_pred eccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccc
Q psy15407 256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRD 316 (604)
Q Consensus 256 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~ 316 (604)
++..|..+++|++|+|++|+|+.||..+| .+.+|+.|+|++|||.|+|.+.||.+|++..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence 99999999999999999999999998765 4668999999999999999999999999864
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=4.4e-26 Score=226.67 Aligned_cols=234 Identities=25% Similarity=0.413 Sum_probs=176.8
Q ss_pred CeeC--CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcC
Q psy15407 92 CSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCL 169 (604)
Q Consensus 92 C~C~--~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 169 (604)
|.|. ...++|++.++++||..+|..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++++|+.|
T Consensus 3 C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 3 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp SEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence 4543 45789999999999999998999999999999998764 48889999999999999999998899999999999
Q ss_pred CCCCCCCC--------ccccccEEEccCCccccc---------------cccccceeeeeeccccCCccccceeecCCCC
Q psy15407 170 GDNYCPPK--------CTCTVRVLFYDGRAGECY---------------IAVELFSSRIRVSYYVGNYPVSTMYRDLSNN 226 (604)
Q Consensus 170 ~l~~~~~~--------~~~~l~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 226 (604)
++++|.+. .+..++.+.+..+..... +..+.+... .+......+ .+|++|+|++|
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l-~~L~~L~Ls~N 159 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNL-TNLEHLDLSSN 159 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGC-TTCCEEECCSS
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccC-CCCCEEECCCC
Confidence 99888543 334566666654422211 111111100 011111122 37888888888
Q ss_pred ceeeccCCCCCCCCCCC----eEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 227 QIGFLSNFTFSPLSKLS----QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 227 ~i~~l~~~~f~~l~~L~----~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
+|+.+++..|..+.+|+ .|+|++|+|+.+++..|... +|+.|+|++|+|+.+++..|..+++|+.|+|++|||.|
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 88888777777776666 78888888888877777654 89999999999999999999999999999999999999
Q ss_pred ccC-CCccccccccccc-cCCccccCCCC
Q psy15407 303 DCG-LAWLSEWVKRDYV-EPGIARCTEPA 329 (604)
Q Consensus 303 dC~-l~~l~~~~~~~~~-~~~~~~C~~P~ 329 (604)
+|. +.|+..|++.... ..+...|..|.
T Consensus 239 ~c~~l~~l~~~~~~~~~~~~~~~~C~~~~ 267 (276)
T 2z62_A 239 SCPRIDYLSRWLNKNSQKEQGSAKCSGSG 267 (276)
T ss_dssp CTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred cCCchHHHHHHHHhcccccCCCceeeCCC
Confidence 996 8899999876443 34456788774
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=8.7e-25 Score=233.37 Aligned_cols=114 Identities=29% Similarity=0.612 Sum_probs=89.9
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 296 (604)
+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+.+.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|+
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 45566666666666666667777777777777777877777788888888999999999999998888999999999999
Q ss_pred CCCcccccC-CCccccccccccc-cCCccccCCCCc
Q psy15407 297 GNPLYCDCG-LAWLSEWVKRDYV-EPGIARCTEPAS 330 (604)
Q Consensus 297 ~Npl~CdC~-l~~l~~~~~~~~~-~~~~~~C~~P~~ 330 (604)
+|||.|+|. +.|+..|++.... ......|..|..
T Consensus 404 ~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c~~~~~ 439 (455)
T 3v47_A 404 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK 439 (455)
T ss_dssp SSCBCCCTTTTHHHHHHHHHTTTTEESCCBBTTTCC
T ss_pred CCCcccCCCcchHHHHHHHhCccceeeeeeecCCCc
Confidence 999999998 7899999875433 344567777643
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2e-25 Score=248.37 Aligned_cols=235 Identities=21% Similarity=0.268 Sum_probs=177.4
Q ss_pred CeEEcCCCCCCcCC---CCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceec-CCCcCCCcccCCcCC
Q psy15407 97 TRVDCSQRGLKEIP---KDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI-EDNAFEGENDQGCLG 170 (604)
Q Consensus 97 ~~l~cs~~~L~~iP---~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ 170 (604)
+.+++++|.+..+. ..+ ...++.|++..|.+..++.. |..+++|+.++++.|++..+ +...|..+.+|+.++
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC--CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccchhhccccccccccccchhhhhhhhhhhcccccccccccc--ccccccccchhhhhcccccccccccccccccccccc
Confidence 67888888886432 211 34567788888888777654 77778888888877765554 445677777777777
Q ss_pred CCCCCCC--------ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCC
Q psy15407 171 DNYCPPK--------CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKL 242 (604)
Q Consensus 171 l~~~~~~--------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L 242 (604)
++.|... ....+..+.+..+.....+ ........ .+|++|+|++|+|+.+++..|.++++|
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~----------~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF----------LPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----------ECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccccccccccchhhhhhhhhhccccccc----------Cchhhhhc-cccCEEECCCCccCCcChHHHcCCCCC
Confidence 7766432 1223333433333211100 00111122 389999999999999999999999999
Q ss_pred CeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCc-ccceeeeccCCCcccccCCCccccccccccc---
Q psy15407 243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADL-HAITHLAIGGNPLYCDCGLAWLSEWVKRDYV--- 318 (604)
Q Consensus 243 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l-~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~--- 318 (604)
++|+|++|+|+.+++.+|.++++|++|+|++|+|+.+++..|..+ ++|+.|+|++|||.|||++.||.+|++....
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~ 600 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 600 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBS
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccC
Confidence 999999999999999999999999999999999999999999888 6899999999999999999999999976542
Q ss_pred cCCccccCCCCcccccccccCCCCceeec
Q psy15407 319 EPGIARCTEPASMRDKLLLTAPASSFQCK 347 (604)
Q Consensus 319 ~~~~~~C~~P~~l~g~~l~~~~~~~~~C~ 347 (604)
....++|++|+.++|+.+.++. +.|+
T Consensus 601 ~~~~~~C~~P~~~~g~~l~~~~---~~C~ 626 (635)
T 4g8a_A 601 EVERMECATPSDKQGMPVLSLN---ITCQ 626 (635)
T ss_dssp CGGGCBBCSSTTTTTCBGGGCC---CCC-
T ss_pred CCCCceeCCchHHCCCEeeeec---cCCC
Confidence 3456799999999999999884 4563
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=3.7e-25 Score=248.49 Aligned_cols=250 Identities=17% Similarity=0.201 Sum_probs=161.2
Q ss_pred CeEEcCCCCCCcCCC-CC--CccCcEEecCCCccee-ecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 97 TRVDCSQRGLKEIPK-DI--PLYTTELILNDNEIGK-IKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~-~l--~~~~~~L~L~~N~i~~-i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
+.|++++|+|+.++. .+ ...+++|+|++|.|+. ++. ..|.++++|++|+|++|+|+.+.+.+|..+++|+.|+++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 456777777776543 33 3456778888888764 443 347778888888888888887777777777777777777
Q ss_pred CCCC----------CccccccEEEccCCcccccccc------c---cceeeeeeccc------------cCCccccceee
Q psy15407 173 YCPP----------KCTCTVRVLFYDGRAGECYIAV------E---LFSSRIRVSYY------------VGNYPVSTMYR 221 (604)
Q Consensus 173 ~~~~----------~~~~~l~~l~~~~~~~~~~~~~------~---~~~~~~~~~~~------------~~~~~~~L~~L 221 (604)
+|.. .....++.+.+..+........ . +......+..+ .... .+|++|
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l-~~L~~L 541 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL-SHLHIL 541 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC-TTCCEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC-CCCCEE
Confidence 6643 2334566666665432211110 0 00000111111 1122 389999
Q ss_pred cCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccccc-CcccceeeeccCCCc
Q psy15407 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA-DLHAITHLAIGGNPL 300 (604)
Q Consensus 222 ~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~~L~L~~Npl 300 (604)
+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..|. .+++|+.|+|++|||
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998887 789999999999999
Q ss_pred ccccCC-Ccccccccccccc----CCccccCCCCcccccccccCCCCceeecC
Q psy15407 301 YCDCGL-AWLSEWVKRDYVE----PGIARCTEPASMRDKLLLTAPASSFQCKE 348 (604)
Q Consensus 301 ~CdC~l-~~l~~~~~~~~~~----~~~~~C~~P~~l~g~~l~~~~~~~~~C~~ 348 (604)
.|||++ .||.+|++..... ....+|+.|+.++|+.+.++++..+.|..
T Consensus 622 ~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~ 674 (680)
T 1ziw_A 622 DCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA 674 (680)
T ss_dssp CBCCCCCSSEECCSSCC------------------------------------
T ss_pred ccCCccHHHHHHHHHhcCcccccccCCcEECCchHHCCCcccccChhhcCCCc
Confidence 999996 9999999765432 23569999999999999999888777644
No 20
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.92 E-value=9.8e-26 Score=232.07 Aligned_cols=205 Identities=20% Similarity=0.285 Sum_probs=152.2
Q ss_pred CCCCC-CeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcc-eecCCCcCCCcc
Q psy15407 87 ACPSG-CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV-TGIEDNAFEGEN 164 (604)
Q Consensus 87 ~CP~~-C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~ 164 (604)
.||.. |+|.+++|+|++++|++||..+|.++++|+|++|+|+.|++. +|.+|++|++|+|++|+| +.|++++|.+++
T Consensus 1 gCp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp -CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CCCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 48976 999999999999999999999999999999999999999874 599999999999999997 558889999998
Q ss_pred cCCcC-CCCCCC--------CCccccccEEEccCCccccccccccce-------ee---eeecccc----CCccccceee
Q psy15407 165 DQGCL-GDNYCP--------PKCTCTVRVLFYDGRAGECYIAVELFS-------SR---IRVSYYV----GNYPVSTMYR 221 (604)
Q Consensus 165 ~L~~L-~l~~~~--------~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~---~~~~~~~----~~~~~~L~~L 221 (604)
+|..+ .+..|. +..+..|+.+.+..+............ .. ..+..+. ......++.|
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 87653 333342 233456666666544322111110000 00 0111111 1122367889
Q ss_pred cCCCCceeeccCCCCCCCCCCCeEEec-CCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceee
Q psy15407 222 DLSNNQIGFLSNFTFSPLSKLSQLILS-YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293 (604)
Q Consensus 222 ~Ls~N~i~~l~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 293 (604)
+|++|+|+.|++.+|.. .+|++|+|+ +|.|+.|++++|.++++|++|+|++|+|+.||+..|..|++|+.+
T Consensus 160 ~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 160 WLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp ECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred ccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 99999999999888864 578899987 588999998999999999999999999999988777665554433
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=6.5e-25 Score=226.30 Aligned_cols=241 Identities=20% Similarity=0.305 Sum_probs=181.7
Q ss_pred CCCCCCCeeCC-CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407 86 AACPSGCSCDG-TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164 (604)
Q Consensus 86 ~~CP~~C~C~~-~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 164 (604)
..+|..|.|.+ .+.++++++|++||..++..+++|+|++|.|+.++.. .|.++++|++|+|++|+|+.+.+.+|.+++
T Consensus 22 ~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 22 SSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp -----CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 34677777764 3579999999999999999999999999999999874 499999999999999999999999999999
Q ss_pred cCCcCCCCCCCCC--------ccccccEEEccCCccccccc-------cccce---eee-eeccc----cCCccccceee
Q psy15407 165 DQGCLGDNYCPPK--------CTCTVRVLFYDGRAGECYIA-------VELFS---SRI-RVSYY----VGNYPVSTMYR 221 (604)
Q Consensus 165 ~L~~L~l~~~~~~--------~~~~l~~l~~~~~~~~~~~~-------~~~~~---~~~-~~~~~----~~~~~~~L~~L 221 (604)
+|+.|++++|.+. ....++.+.+..+....... .++.. ... .+... ... ..+|++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC-CCCCCEE
Confidence 9999999998643 34567778877664321111 00000 001 01111 112 2388999
Q ss_pred cCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec--------------------------------------------
Q psy15407 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-------------------------------------------- 257 (604)
Q Consensus 222 ~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-------------------------------------------- 257 (604)
+|++|+|+.+.+..|..+++|++|+|++|++..++.
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 999999999988888887777766666665443321
Q ss_pred -----------cccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccccccc-CCccc
Q psy15407 258 -----------DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDYVE-PGIAR 324 (604)
Q Consensus 258 -----------~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~~~-~~~~~ 324 (604)
..|..+++|+.|+|++|+|+.+|..+|..+++|++|+|++|||.|+|. +.|+..|++..... .....
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 339 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK 339 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCB
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccCCCCcc
Confidence 124567899999999999999999989999999999999999999996 89999998765432 34578
Q ss_pred cCCC
Q psy15407 325 CTEP 328 (604)
Q Consensus 325 C~~P 328 (604)
|..|
T Consensus 340 C~~p 343 (353)
T 2z80_A 340 CSGS 343 (353)
T ss_dssp BTTT
T ss_pred cCCC
Confidence 8887
No 22
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.91 E-value=1.8e-24 Score=199.85 Aligned_cols=164 Identities=34% Similarity=0.722 Sum_probs=135.1
Q ss_pred CCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCC
Q psy15407 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQG 167 (604)
Q Consensus 88 CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 167 (604)
||..|+|.++.|+|++++|+.+|..++..+++|+|++|+|+.+++. +|..+++|++|+|++|+|+.+++.+
T Consensus 1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-------- 71 (177)
T 2o6r_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQNQIQSLPDGV-------- 71 (177)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTT--------
T ss_pred CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCCcceEeChhH--------
Confidence 8999999999999999999999998888888888888888887663 4777777777777777776655443
Q ss_pred cCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407 168 CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLIL 247 (604)
Q Consensus 168 ~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L 247 (604)
|..+++|++|+|
T Consensus 72 --------------------------------------------------------------------~~~l~~L~~L~l 83 (177)
T 2o6r_A 72 --------------------------------------------------------------------FDKLTKLTILYL 83 (177)
T ss_dssp --------------------------------------------------------------------TTTCTTCCEEEC
T ss_pred --------------------------------------------------------------------ccCCCccCEEEC
Confidence 445667777788
Q ss_pred cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCccccccccccc-cCCcccc
Q psy15407 248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDYV-EPGIARC 325 (604)
Q Consensus 248 s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~~-~~~~~~C 325 (604)
++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+|.|+|. +.||..|+..... ......|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C 163 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 163 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBB
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEe
Confidence 8888888877778888999999999999999999888999999999999999999998 8899999875443 3355678
Q ss_pred CCC
Q psy15407 326 TEP 328 (604)
Q Consensus 326 ~~P 328 (604)
..+
T Consensus 164 ~~~ 166 (177)
T 2o6r_A 164 SGS 166 (177)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=6e-24 Score=216.97 Aligned_cols=213 Identities=26% Similarity=0.310 Sum_probs=142.5
Q ss_pred CCCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407 84 IDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE 163 (604)
Q Consensus 84 ~~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l 163 (604)
+...||..|.|..+.|+|++++|+.+|..++..++.|+|++|+|+.+++. .|.++++|++|+|++|+|+.+.+.+|..+
T Consensus 21 ~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 21 MGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp -CCCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred ccCCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 45679999999999999999999999999999999999999999999874 49999999999999999999999999999
Q ss_pred ccCCcCCCCCCCCCcc-----ccccEEEccCCccccc---------------cccccceeeeeeccccCCccccceeecC
Q psy15407 164 NDQGCLGDNYCPPKCT-----CTVRVLFYDGRAGECY---------------IAVELFSSRIRVSYYVGNYPVSTMYRDL 223 (604)
Q Consensus 164 ~~L~~L~l~~~~~~~~-----~~l~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~L~~L~L 223 (604)
++|+.|++++|.+..+ ..++.+.+..+..... +..+.+............. .+|++|+|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l 178 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRI 178 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEEC
Confidence 9999999999865433 3566666654432211 1111100000000000111 25555566
Q ss_pred CCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 224 SNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 224 s~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
++|+|+.++...+ ++|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus 179 ~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 179 ADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 6665555554332 45555555555555555555555555555555555555555555555555555555555554
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.8e-24 Score=239.53 Aligned_cols=233 Identities=21% Similarity=0.232 Sum_probs=177.5
Q ss_pred CCeEEcCCCCCCcC---CCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCC-CcCCCcccCCcC
Q psy15407 96 GTRVDCSQRGLKEI---PKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED-NAFEGENDQGCL 169 (604)
Q Consensus 96 ~~~l~cs~~~L~~i---P~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L 169 (604)
-+.|++++|.|+.+ |..+ ...+++|+|++|.|+.++.. |..+++|++|+|++|+|+.+.+ ..|..+++|+.|
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN--FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC--CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhh--ccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 37899999999876 4433 46789999999999999843 9999999999999999999887 789999999999
Q ss_pred CCCCCCCC--------ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCC
Q psy15407 170 GDNYCPPK--------CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSK 241 (604)
Q Consensus 170 ~l~~~~~~--------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~ 241 (604)
++++|... ....++.+.+..+..... .+....... .+|++|+|++|+|+.+++..|..+++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN----------TLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG----------EECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc----------chHHhhccC-CCCCEEECCCCcCCccChhhhccccc
Confidence 99998633 233444444444322110 011111222 38999999999999999999999999
Q ss_pred CCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcc-cceeeeccCCCcccccCCCccccccccccc--
Q psy15407 242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLH-AITHLAIGGNPLYCDCGLAWLSEWVKRDYV-- 318 (604)
Q Consensus 242 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~-- 318 (604)
|++|+|++|+|+.+.+..|..+++|++|+|++|+|+.+|.. |..++ +|+.|+|++|||.|+|.+.||.+|++....
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~ 577 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFL 577 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSB
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccc
Confidence 99999999999999999999999999999999999999987 77786 599999999999999999999999976432
Q ss_pred -cCCccccCCCCcccccccccCCCC
Q psy15407 319 -EPGIARCTEPASMRDKLLLTAPAS 342 (604)
Q Consensus 319 -~~~~~~C~~P~~l~g~~l~~~~~~ 342 (604)
.....+|..|..++|+.+.++...
T Consensus 578 ~~~~~~~C~~p~~~~~~~l~~~~~~ 602 (606)
T 3vq2_A 578 VNVEQMTCATPVEMNTSLVLDFNNS 602 (606)
T ss_dssp SSGGGCCCC----------------
T ss_pred cCCccceeCCChHhCCCEeeecccc
Confidence 345689999999999999888654
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=9.3e-24 Score=215.72 Aligned_cols=215 Identities=26% Similarity=0.333 Sum_probs=144.8
Q ss_pred CCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407 85 DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164 (604)
Q Consensus 85 ~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 164 (604)
...||..|.|..+.|+|++++|++||..++..++.|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.+++
T Consensus 24 ~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 24 SAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp -CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 4569999999999999999999999999999999999999999999764 499999999999999999999999999999
Q ss_pred cCCcCCCCCCCCCcc-----ccccEEEccCCcccccc---------------cccccee-------------------ee
Q psy15407 165 DQGCLGDNYCPPKCT-----CTVRVLFYDGRAGECYI---------------AVELFSS-------------------RI 205 (604)
Q Consensus 165 ~L~~L~l~~~~~~~~-----~~l~~l~~~~~~~~~~~---------------~~~~~~~-------------------~~ 205 (604)
+|+.|++++|.+..+ ..++.+.+..+...... ..+.+.. ..
T Consensus 103 ~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n 182 (332)
T 2ft3_A 103 KLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182 (332)
T ss_dssp TCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSS
T ss_pred CCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCC
Confidence 999999999865433 35666666544322111 0010000 00
Q ss_pred eeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccccc
Q psy15407 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285 (604)
Q Consensus 206 ~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 285 (604)
.+..++.....+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++.+|..+++|+.|+|++|+|+.+|.. |.
T Consensus 183 ~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~ 261 (332)
T 2ft3_A 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LP 261 (332)
T ss_dssp BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GG
T ss_pred CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hh
Confidence 00011111123455555555555555555555566666666666666665555555566666666666666655543 45
Q ss_pred CcccceeeeccCCCcc
Q psy15407 286 DLHAITHLAIGGNPLY 301 (604)
Q Consensus 286 ~l~~L~~L~L~~Npl~ 301 (604)
.+++|+.|+|++|++.
T Consensus 262 ~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNIT 277 (332)
T ss_dssp GCTTCCEEECCSSCCC
T ss_pred cCccCCEEECCCCCCC
Confidence 5556666666666554
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=5.4e-24 Score=235.74 Aligned_cols=242 Identities=20% Similarity=0.251 Sum_probs=178.3
Q ss_pred CeEEcCCCCCC-cCCCC-C--CccCcEEecCCCcceeec--CCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407 97 TRVDCSQRGLK-EIPKD-I--PLYTTELILNDNEIGKIK--SDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG 170 (604)
Q Consensus 97 ~~l~cs~~~L~-~iP~~-l--~~~~~~L~L~~N~i~~i~--~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 170 (604)
+.|+++++.+. .+|.. + ...+++|+|++|.|+.+. +. .|..+++|++|+|++|+|+.+.+.+|..+++|+.|+
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 44555555544 44443 2 244577777777777664 32 377777888888888887777777777778888887
Q ss_pred CCCCC---------CCccccccEEEccCCcccccc---------------ccccceee-eeeccccCCccccceeecCCC
Q psy15407 171 DNYCP---------PKCTCTVRVLFYDGRAGECYI---------------AVELFSSR-IRVSYYVGNYPVSTMYRDLSN 225 (604)
Q Consensus 171 l~~~~---------~~~~~~l~~l~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~L~~L~Ls~ 225 (604)
+++|. +.....++.+.+..+...... ..+.+... .......... .+|++|+|++
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~ 485 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVLSF 485 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-TTCCEEECTT
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC-CCccEEECCC
Confidence 77763 223455666666654322111 11111100 0000111122 3899999999
Q ss_pred CceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC
Q psy15407 226 NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG 305 (604)
Q Consensus 226 N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~ 305 (604)
|+|+.+++..|..+++|++|+|++|+|+.+.+..|..+++| .|+|++|+|+.+++..|..+++|+.|+|++|||.|+|.
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccc---ccCCccccCCCCcccccccccCCC
Q psy15407 306 LAWLSEWVKRDY---VEPGIARCTEPASMRDKLLLTAPA 341 (604)
Q Consensus 306 l~~l~~~~~~~~---~~~~~~~C~~P~~l~g~~l~~~~~ 341 (604)
+.||..|++... ......+|..|+.++|+.+.+++.
T Consensus 565 ~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~ 603 (606)
T 3t6q_A 565 NIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603 (606)
T ss_dssp GHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred cHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence 999999997542 234567899999999999988864
No 27
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.7e-24 Score=208.91 Aligned_cols=205 Identities=19% Similarity=0.235 Sum_probs=161.9
Q ss_pred CCCCCCCeeCC-C--eEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCc-ceecCCCcCC
Q psy15407 86 AACPSGCSCDG-T--RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ-VTGIEDNAFE 161 (604)
Q Consensus 86 ~~CP~~C~C~~-~--~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~ 161 (604)
+.||..|.|.. + .|+|.+ |++||. ++..+++|+|++|+|+.|++. .|.++++|++|+|++|+ |+.|++.+|.
T Consensus 2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~ 77 (239)
T 2xwt_C 2 GCSSPPCECHQEEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFY 77 (239)
T ss_dssp -CCSSSCSEEECSTTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEE
T ss_pred CCCCCCCeeCCCCcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcC
Confidence 46999999965 4 466876 999999 999999999999999999874 49999999999999997 9999999999
Q ss_pred CcccCCcCCCCC-CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccce---eecCCCC-ceeeccCCCC
Q psy15407 162 GENDQGCLGDNY-CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM---YRDLSNN-QIGFLSNFTF 236 (604)
Q Consensus 162 ~l~~L~~L~l~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~Ls~N-~i~~l~~~~f 236 (604)
++++|+.|++++ |.+..+.... +.-...+..+.+..+.+.....+ ... .+|+ +|+|++| +|+.+++..|
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~L~~L~l~~n~l~~lp~~----~~l-~~L~~L~~L~l~~N~~l~~i~~~~~ 151 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDA-LKELPLLKFLGIFNTGLKMFPDL----TKV-YSTDIFFILEITDNPYMTSIPVNAF 151 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTS-EECCTTCCEEEEEEECCCSCCCC----TTC-CBCCSEEEEEEESCTTCCEECTTTT
T ss_pred CCcCCcEEECCCCCCeeEcCHHH-hCCCCCCCEEeCCCCCCcccccc----ccc-cccccccEEECCCCcchhhcCcccc
Confidence 999999999998 7654332111 11112233333333322221111 111 2455 9999999 9999999899
Q ss_pred CCCCCCC-eEEecCCcceeeeccccCCCCcccEEEccCCc-cccCCcccccCc-ccceeeeccCCCcc
Q psy15407 237 SPLSKLS-QLILSYNKLQCIDRDALAGLKSLRIISLHGND-ISMIPEGAFADL-HAITHLAIGGNPLY 301 (604)
Q Consensus 237 ~~l~~L~-~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l-~~L~~L~L~~Npl~ 301 (604)
..+++|+ +|+|++|+|+.+++.+|.. ++|+.|+|++|+ |+.+++..|..+ ++|+.|+|++|++.
T Consensus 152 ~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred cchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 9999999 9999999999998888887 899999999995 999998889999 99999999999886
No 28
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.89 E-value=2.2e-23 Score=190.99 Aligned_cols=153 Identities=37% Similarity=0.713 Sum_probs=106.4
Q ss_pred CCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ 166 (604)
Q Consensus 87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 166 (604)
.||..|+|.+++|+|++++|++||..++..+++|+|++|+|+.+++. .|.+|
T Consensus 2 ~CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-~~~~l--------------------------- 53 (170)
T 3g39_A 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG-VFDRL--------------------------- 53 (170)
T ss_dssp CCC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTC---------------------------
T ss_pred cCcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh-hhcCc---------------------------
Confidence 59999999999999999999999976655555555555555444332 13333
Q ss_pred CcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEE
Q psy15407 167 GCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLI 246 (604)
Q Consensus 167 ~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~ 246 (604)
++|++|+
T Consensus 54 -------------------------------------------------------------------------~~L~~L~ 60 (170)
T 3g39_A 54 -------------------------------------------------------------------------TQLTRLD 60 (170)
T ss_dssp -------------------------------------------------------------------------TTCSEEE
T ss_pred -------------------------------------------------------------------------ccCCEEE
Confidence 3444455
Q ss_pred ecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCccccccccccc-------
Q psy15407 247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDYV------- 318 (604)
Q Consensus 247 Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~~------- 318 (604)
|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|. +.||..|++....
T Consensus 61 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~ 140 (170)
T 3g39_A 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLN 140 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSS
T ss_pred CCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeecccc
Confidence 55555555555556666777777788888888888778888999999999999999996 9999999875432
Q ss_pred -cCCccccCCCCcccccccccCCCCce
Q psy15407 319 -EPGIARCTEPASMRDKLLLTAPASSF 344 (604)
Q Consensus 319 -~~~~~~C~~P~~l~g~~l~~~~~~~~ 344 (604)
.....+|..| |+.+.++...++
T Consensus 141 ~~~~~~~C~~~----~~~~~~~~~~~~ 163 (170)
T 3g39_A 141 LDPDSARCSGT----NTPVRAVTEAST 163 (170)
T ss_dssp BCGGGSBBCC-----CCBGGGCCSTTC
T ss_pred CCcccceeCCC----Cccchhcccccc
Confidence 3345678776 555666554443
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=9.2e-23 Score=226.77 Aligned_cols=186 Identities=23% Similarity=0.300 Sum_probs=155.5
Q ss_pred CCCCCee--CCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCccc
Q psy15407 88 CPSGCSC--DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165 (604)
Q Consensus 88 CP~~C~C--~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 165 (604)
++..|.| ...+++|++.+|++||.++|..+++|+|++|+|+.|++. .|.+|++|++|+|++|+|+.|++++|.+|++
T Consensus 23 ~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~ 101 (635)
T 4g8a_A 23 SWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 101 (635)
T ss_dssp --CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCC
Confidence 3456766 467899999999999999999999999999999999874 4999999999999999999999999999999
Q ss_pred CCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeE
Q psy15407 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQL 245 (604)
Q Consensus 166 L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L 245 (604)
|++|+|++|.+..+.. ..| .. ..+|++|+|++|+|+.+++..|.++++|++|
T Consensus 102 L~~L~Ls~N~l~~l~~--------------------------~~f-~~-L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 102 LSTLILTGNPIQSLAL--------------------------GAF-SG-LSSLQKLVAVETNLASLENFPIGHLKTLKEL 153 (635)
T ss_dssp CCEEECTTCCCCEECG--------------------------GGG-TT-CTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCEEEccCCcCCCCCH--------------------------HHh-cC-CCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence 9999999876432110 001 11 1389999999999999999999999999999
Q ss_pred EecCCcceeee-ccccCCCCcccEEEccCCccccCCcccccCcccce----eeeccCCCccc
Q psy15407 246 ILSYNKLQCID-RDALAGLKSLRIISLHGNDISMIPEGAFADLHAIT----HLAIGGNPLYC 302 (604)
Q Consensus 246 ~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~----~L~L~~Npl~C 302 (604)
+|++|+|+.+. +..|..+++|++|+|++|+|+.+++..|..+.++. .++++.|++.-
T Consensus 154 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred ccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 99999998864 56778899999999999999999888887766543 57788888763
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1e-22 Score=223.25 Aligned_cols=89 Identities=26% Similarity=0.310 Sum_probs=69.1
Q ss_pred CCCCCCCeeCC-CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407 86 AACPSGCSCDG-TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164 (604)
Q Consensus 86 ~~CP~~C~C~~-~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 164 (604)
..++..|.|.. +.|+|++++|+.||..++..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.+++
T Consensus 22 ~~~~~~~~~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 22 VGSMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp -----------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred hccccccccCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence 34566677753 6899999999999999999999999999999999763 489999999999999999999988998888
Q ss_pred cCCcCCCCCCC
Q psy15407 165 DQGCLGDNYCP 175 (604)
Q Consensus 165 ~L~~L~l~~~~ 175 (604)
+|++|+|++|.
T Consensus 101 ~L~~L~Ls~N~ 111 (562)
T 3a79_B 101 DLEYLDVSHNR 111 (562)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEECCCCc
Confidence 88888777663
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=6.7e-23 Score=235.23 Aligned_cols=124 Identities=24% Similarity=0.419 Sum_probs=93.4
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 296 (604)
+|+.|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..|. ++|+.|+|++|+|+.+++..| .+|+.|+|+
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~ 555 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDIT 555 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEE
T ss_pred cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEec
Confidence 566777777777777777777777777777777777777666665 677777777777777776554 478899999
Q ss_pred CCCcccccCCCccccccccccc----cCCccccCCCCcccccccccCCCCceeec
Q psy15407 297 GNPLYCDCGLAWLSEWVKRDYV----EPGIARCTEPASMRDKLLLTAPASSFQCK 347 (604)
Q Consensus 297 ~Npl~CdC~l~~l~~~~~~~~~----~~~~~~C~~P~~l~g~~l~~~~~~~~~C~ 347 (604)
+|||.|+|.+.||..|++.... .+....|..|..++|+.+.++... .|.
T Consensus 556 ~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~--~C~ 608 (844)
T 3j0a_A 556 HNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE--GCD 608 (844)
T ss_dssp EECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCC--CC-
T ss_pred CCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccc--cCC
Confidence 9999999999999999875433 234568999999999988877553 454
No 32
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.88 E-value=1.6e-22 Score=185.85 Aligned_cols=131 Identities=37% Similarity=0.728 Sum_probs=95.5
Q ss_pred CCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407 85 DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164 (604)
Q Consensus 85 ~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 164 (604)
...||..|+|..+.|+|++++|++||..++..+++|+|++|+|+.+++. .|.++
T Consensus 3 ~~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l------------------------- 56 (174)
T 2r9u_A 3 SAGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPG-VFDHL------------------------- 56 (174)
T ss_dssp CCSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTC-------------------------
T ss_pred CCCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHH-HhcCC-------------------------
Confidence 4579999999999999999999999976665555555555555444332 13333
Q ss_pred cCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCe
Q psy15407 165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQ 244 (604)
Q Consensus 165 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~ 244 (604)
++|++
T Consensus 57 ---------------------------------------------------------------------------~~L~~ 61 (174)
T 2r9u_A 57 ---------------------------------------------------------------------------VNLQQ 61 (174)
T ss_dssp ---------------------------------------------------------------------------TTCCE
T ss_pred ---------------------------------------------------------------------------cCCCE
Confidence 34444
Q ss_pred EEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCccccccccc
Q psy15407 245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRD 316 (604)
Q Consensus 245 L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~ 316 (604)
|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|.|+|. +.||..|++..
T Consensus 62 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~ 134 (174)
T 2r9u_A 62 LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADH 134 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred EECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence 4444445555555556666777777777888888888778888999999999999999996 99999998654
No 33
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=5e-22 Score=196.79 Aligned_cols=187 Identities=24% Similarity=0.370 Sum_probs=162.1
Q ss_pred CeEEcCCCCCCcCCCC-CCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKD-IPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP 175 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~-l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~ 175 (604)
+.|+++++.++.++.- ....+++|+|++|.|+.++. |..+++|++|+|++|+|+.+++..|..+++|+.|++++|.
T Consensus 44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh---hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 6899999999988752 25678999999999998852 8999999999999999999999999999999999999876
Q ss_pred CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee
Q psy15407 176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255 (604)
Q Consensus 176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i 255 (604)
+..+.. ..... ..+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+
T Consensus 121 l~~~~~---------------------------~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 121 LQSLPD---------------------------GVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp CCCCCT---------------------------TTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCH---------------------------HHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 432110 00111 13899999999999999999999999999999999999999
Q ss_pred eccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCccccccc
Q psy15407 256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVK 314 (604)
Q Consensus 256 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~ 314 (604)
++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|.|+|. +.++..|..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 232 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 677766644
No 34
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=99.87 E-value=2.9e-26 Score=217.66 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=142.0
Q ss_pred CCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCC------CCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCC
Q psy15407 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDA------CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINID 437 (604)
Q Consensus 364 ~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~------C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~ 437 (604)
.+|.++|+|++.. ++|+|.|+.||+|+.|+..+++ |...||.++++| |.|..|+. .+
T Consensus 38 ~~c~ngG~C~~g~-~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc---------------~~G~~c~~-~~ 100 (267)
T 4fbr_A 38 IKSDDGGKTLKGT-MTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVW---------------VLGARDKQ-NI 100 (267)
T ss_dssp EECSSTTSEEEEE-EEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEE---------------ECCCCSSC-CE
T ss_pred CCcCCCCeecCCC-CCeEEeCCCCcccccccccccccccccCcCCCcccCCCee---------------eccCcccc-cc
Confidence 3788999999876 6899999999999999999988 666666665554 45677874 46
Q ss_pred cCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCC
Q psy15407 438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDC 517 (604)
Q Consensus 438 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C 517 (604)
+|.+.||.++++|++...+|+|.|++||+|..|+.++++|... .+...+.|.+ +..+|.|.+|+.+++ |
T Consensus 101 eC~s~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~--~~c~s~pC~n--------gg~c~~G~~c~~~i~-c 169 (267)
T 4fbr_A 101 VAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQ--WGGSAAPWHS--------GGVWVLGTRGKQNVI-N 169 (267)
T ss_dssp EEEEEECSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEE--CSSTTSCCEE--------EEEEECCSSTTSCEE-E
T ss_pred ccCCCCCCCCCEEecCCccEEeeCCCCccccCCCCCccccccc--CCcCCccccC--------Ccceecccccccccc-c
Confidence 8999999999999999999999999999999998888775421 2222223322 111234666665443 4
Q ss_pred CCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCccccc--CCCCCCC----------CC--------CCCCCCCc-eeC
Q psy15407 518 VNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAM--MYPQTSP----------CQ--------HHDCKNGI-CFQ 576 (604)
Q Consensus 518 ~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~--~~~~~~~----------C~--------~~~C~~g~-C~~ 576 (604)
...+|.++|+|++..++|+|.|++||+|..|+....... ..-...+ |. ..+|.+++ |++
T Consensus 170 ~~~~c~ngg~C~dg~~~y~C~Cp~Gf~G~~c~~~i~ec~~~~~c~~~~c~~gG~~~~~C~~g~n~~~c~~~c~ngGtC~d 249 (267)
T 4fbr_A 170 VDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQNVVALNVASSDGGKTLA 249 (267)
T ss_dssp EEEECSSTTSEEEEEEEETTSCCEEEEEEEEETTEEEEEEECSCTTSCCEEEEEEECCCCTTCCEEEEEEECSSTTSEEE
T ss_pred CCCCCCCCCEeeCCCCCeEEeCCCCccccccccccceeccCCCccCCcccCCCeEEEecCCCCccccCCcCCCCCCEeeC
Confidence 456788888888888888888888888888776533200 0000001 11 12355655 988
Q ss_pred CCCCCCeeeecCCCCcCC
Q psy15407 577 PQGSNDYLCKCAPGYSGK 594 (604)
Q Consensus 577 ~~g~~~~~C~C~~G~~G~ 594 (604)
.. .+|+|.|++||+|+
T Consensus 250 g~--~sy~CeCp~GF~G~ 265 (267)
T 4fbr_A 250 GT--MIYNGEGPIGFRAR 265 (267)
T ss_dssp EE--EEETTSCCEEEEEE
T ss_pred CC--cceeecCCCCcccc
Confidence 77 78999999999986
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2e-21 Score=202.98 Aligned_cols=234 Identities=16% Similarity=0.238 Sum_probs=154.1
Q ss_pred CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
-+.|++++|.|+.+|... ...+++|+|++|.|+.++. .+|.++++|++|+|++|+|+.+.+.+|..+++|+.|+++
T Consensus 95 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred cCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 367888888888876543 3567888888888888876 457888888888888888888888888888888888888
Q ss_pred CCCCCc-----cccccEEEccCCcc----------ccccccccceee---------------eeec--cccCCcccccee
Q psy15407 173 YCPPKC-----TCTVRVLFYDGRAG----------ECYIAVELFSSR---------------IRVS--YYVGNYPVSTMY 220 (604)
Q Consensus 173 ~~~~~~-----~~~l~~l~~~~~~~----------~~~~~~~~~~~~---------------~~~~--~~~~~~~~~L~~ 220 (604)
+|.+.. +..+..+.+..+.. .+.+..+.+... ..+. ...... .+|++
T Consensus 174 ~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~ 252 (390)
T 3o6n_A 174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVE 252 (390)
T ss_dssp SSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC-TTCSE
T ss_pred CCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC-CCccE
Confidence 876442 23333333332211 111111111000 0000 011112 36778
Q ss_pred ecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccc-----------------
Q psy15407 221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA----------------- 283 (604)
Q Consensus 221 L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~----------------- 283 (604)
|+|++|.|+.+.+..|..+++|++|+|++|+|+.++. .+..+++|++|+|++|+|+.+++..
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc
Confidence 8888888888777778788888888888888877743 4456677777777777776665431
Q ss_pred ---ccCcccceeeeccCCCcccccCCCccccccccccccCCccccCCCCcccc
Q psy15407 284 ---FADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRD 333 (604)
Q Consensus 284 ---f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g 333 (604)
+..+++|+.|+|++|||.|+|...|+..|.+... ......|..|....+
T Consensus 332 ~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~-~~~~~~c~~~~~~~~ 383 (390)
T 3o6n_A 332 TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV-DDADQHCKIDYQLEH 383 (390)
T ss_dssp CCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTB-CCCCSCCCTTCEEET
T ss_pred eeCchhhccCCEEEcCCCCccchhHHHHHHHHHhhcc-cccCceecccccccc
Confidence 4456778889999999999998888877655443 233456766655444
No 36
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=99.86 E-value=2e-21 Score=170.00 Aligned_cols=114 Identities=37% Similarity=1.099 Sum_probs=88.5
Q ss_pred CCCcCC--CCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcc
Q psy15407 435 NIDDCL--SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTV 512 (604)
Q Consensus 435 ~~~~C~--~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~ 512 (604)
++++|. ..+|.++++|+++.++|+|.|++||+|..|+.++++|.. ++|.++++|++..++|+|.|++||+|..|+.
T Consensus 4 dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~ 81 (135)
T 2vj3_A 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATCLDQIGEFQCICMPGYEGVHCEV 81 (135)
T ss_dssp CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEECCTTTT--CCCCSSCEEEECSSCEEEECCTTEESSSSCE
T ss_pred ccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCcccccCccCCC--CCCCCCCEEeCCCCCceeeCCCCCcCCccee
Confidence 677776 567777778887777788888888888777766777764 4677777887777778888888888888877
Q ss_pred cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407 513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~ 550 (604)
++++|...+|.++|+|++..++|+|.|++||+|..|+.
T Consensus 82 ~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~~C~~ 119 (135)
T 2vj3_A 82 NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119 (135)
T ss_dssp ECCTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSCE
T ss_pred cCCcccCCCcCCCCEeECCCCCeEEECCCCCcCCccCc
Confidence 77778777888778888877888888888888888775
No 37
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=99.86 E-value=7.8e-23 Score=189.87 Aligned_cols=149 Identities=23% Similarity=0.578 Sum_probs=124.8
Q ss_pred CCCCCCCCcEEEeCCCCeEEecCCCCCCC---CcccCCCcCCCC--CCCCCCCCceeecC-----CCeEEecCCCCcCCc
Q psy15407 440 LSHKCENNATCVDLIQAYECRCAPGFQGE---FCQTKTPFCAGE--YNPCRNGARCLDHF-----SHYTCECTPGFSGVN 509 (604)
Q Consensus 440 ~~~~C~~~~~C~~~~~~~~C~C~~g~~g~---~C~~~~~~C~~~--~~~C~~~~~C~~~~-----~~~~C~C~~g~~g~~ 509 (604)
...||.+ ++|+++.++|+|.|++||+|. .|+ ++++|... .++|.++++|++.. ++|+|.|++||+|..
T Consensus 9 ~~~pC~n-g~C~~~~g~~~C~C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~ 86 (186)
T 1z1y_A 9 VDTICXN-GQLVQMSNHFXCMCNEGLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE 86 (186)
T ss_dssp TTCCCBT-EEEEECSSCEEEEECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET
T ss_pred CCCCCCC-CEeECCCCCeEeECCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC
Confidence 4678885 599999999999999999877 786 67889843 46899999999998 899999999999986
Q ss_pred CcccCCCCCCCCCCCCCEEe----eCCCCeEeeeCCCCcc-----CCCCcCcccccCCCCCCCCCCCCC-CCCc-eeCCC
Q psy15407 510 CTVNVDDCVNHMCQNGGTCV----DGINDYTCKCEGDFVG-----KFCEIAPFVAMMYPQTSPCQHHDC-KNGI-CFQPQ 578 (604)
Q Consensus 510 c~~~~~~C~~~~C~~~~~C~----~~~~~y~C~C~~G~~G-----~~C~~~~~~~~~~~~~~~C~~~~C-~~g~-C~~~~ 578 (604)
+...+++|...+|.++++|+ +..++|+|.|++||+| ..|+.. ..++|.. .| .+++ |+++.
T Consensus 87 ~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~--------~~~~C~~-~C~~~~~~C~n~~ 157 (186)
T 1z1y_A 87 DTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXT--------GETACQL-XCNTDNEVCXNVE 157 (186)
T ss_dssp TEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEE--------ECCCCCC-CCCTTTEEEEEET
T ss_pred CCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEc--------CCCcccc-cccccCcceecCC
Confidence 65457999999999999999 7888999999999998 667642 1356764 78 6655 99998
Q ss_pred CCCCeeeecCCCCcCCCCCCCcc
Q psy15407 579 GSNDYLCKCAPGYSGKESLLQQT 601 (604)
Q Consensus 579 g~~~~~C~C~~G~~G~~C~~~~~ 601 (604)
++|+|.|++||+|..|+....
T Consensus 158 --g~y~C~C~~G~~g~~~~~~~~ 178 (186)
T 1z1y_A 158 --GVYXCQCMEGFTFDXEXNVCL 178 (186)
T ss_dssp --TEEEEEECTTCEEETTTTEEE
T ss_pred --CCeeeECCCCCccCcccccCC
Confidence 889999999999999986543
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=3.1e-21 Score=213.56 Aligned_cols=200 Identities=26% Similarity=0.331 Sum_probs=136.3
Q ss_pred CCCCCCCeeC--CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407 86 AACPSGCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE 163 (604)
Q Consensus 86 ~~CP~~C~C~--~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l 163 (604)
..||..|.|. ...|+|++.+|++||..+|..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++
T Consensus 2 ~~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 80 (606)
T 3t6q_A 2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80 (606)
T ss_dssp ----CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTC
T ss_pred ccccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCc
Confidence 3579999996 67899999999999999999999999999999999764 49999999999999999999999999999
Q ss_pred ccCCcCCCCCCCCCc--------cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCC
Q psy15407 164 NDQGCLGDNYCPPKC--------TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFT 235 (604)
Q Consensus 164 ~~L~~L~l~~~~~~~--------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~ 235 (604)
.+|+.|+|++|.+.. ...++.+.+..+... ..... .... ..+|++|+|++|+|+.++...
T Consensus 81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---------~l~~~--~~~~-l~~L~~L~L~~n~l~~~~~~~ 148 (606)
T 3t6q_A 81 HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS---------SIDFI--PLHN-QKTLESLYLGSNHISSIKLPK 148 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS---------CGGGS--CCTT-CTTCCEEECCSSCCCCCCCCT
T ss_pred cccCeeeCCCCcccccChhhhcccccccEeeccccCcc---------cCCcc--hhcc-CCcccEEECCCCcccccCccc
Confidence 999999999986432 222333333322111 10000 0011 125666666666666655444
Q ss_pred CCCCCCCCeEEecCCcceeeeccccCCCCccc--EEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLR--IISLHGNDISMIPEGAFADLHAITHLAIGGNP 299 (604)
Q Consensus 236 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~--~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np 299 (604)
+..+++|++|+|++|+|+.+.+..|..+++|+ .|+|++|+|+.+++..|.. .+|+.|++++|.
T Consensus 149 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~ 213 (606)
T 3t6q_A 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ 213 (606)
T ss_dssp TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS
T ss_pred ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch
Confidence 44566666666666666666666666666666 5666666666666655543 356666666654
No 39
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=99.85 E-value=3.1e-21 Score=168.89 Aligned_cols=120 Identities=38% Similarity=0.978 Sum_probs=69.3
Q ss_pred CCCc--CCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCC
Q psy15407 359 NACY--KSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINI 436 (604)
Q Consensus 359 ~~C~--~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~ 436 (604)
++|. .+||.++|+|++.. ++|+|.|++||+|..|+.++++|...||.++++|.+. .++|.|.|++||+|..|+.++
T Consensus 6 deC~~~~~~C~~~g~C~~~~-g~~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~-~g~~~C~C~~G~~G~~C~~~~ 83 (135)
T 2vj3_A 6 DECSLGANPCEHAGKCINTL-GSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ-IGEFQCICMPGYEGVHCEVNT 83 (135)
T ss_dssp CTTTSSSCSSSTTCEEEECS-SSEEEECCTTEESTTSCEECCTTTTCCCCSSCEEEEC-SSCEEEECCTTEESSSSCEEC
T ss_pred ccccCCCCCCCCCCEeECCC-CCEEEECCCCCcCCcccccCccCCCCCCCCCCEEeCC-CCCceeeCCCCCcCCcceecC
Confidence 4454 45666666666543 4566666666666666555666666666666666552 455666666666666666556
Q ss_pred CcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCC
Q psy15407 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE 480 (604)
Q Consensus 437 ~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~ 480 (604)
++|...+|.++++|++..++|.|.|++||+|..|+.++++|...
T Consensus 84 ~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~~C~~~i~~C~~~ 127 (135)
T 2vj3_A 84 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDA 127 (135)
T ss_dssp CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSCEECC-----
T ss_pred CcccCCCcCCCCEeECCCCCeEEECCCCCcCCccCccCccccCC
Confidence 66666666666666666666666666666666665555555543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=8.9e-21 Score=209.20 Aligned_cols=234 Identities=16% Similarity=0.235 Sum_probs=154.8
Q ss_pred CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
-+.|++++|.|+.+|... ...+++|+|++|.|+.+++ .+|.++++|++|+|++|.|+.+.+.+|.++++|+.|+|+
T Consensus 101 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 367888888888877654 3566888888888888876 347888888888888888888888888888888888888
Q ss_pred CCCCCc-----cccccEEEccCCcc----------ccccccccceee---------------eee--ccccCCcccccee
Q psy15407 173 YCPPKC-----TCTVRVLFYDGRAG----------ECYIAVELFSSR---------------IRV--SYYVGNYPVSTMY 220 (604)
Q Consensus 173 ~~~~~~-----~~~l~~l~~~~~~~----------~~~~~~~~~~~~---------------~~~--~~~~~~~~~~L~~ 220 (604)
+|.+.. +..+..+.+..+.. .+.+..+.+... ..+ ......+ .+|+.
T Consensus 180 ~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~ 258 (597)
T 3oja_B 180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVE 258 (597)
T ss_dssp TSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSE
T ss_pred CCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCE
Confidence 875432 23333443332211 111111111000 000 0011122 37788
Q ss_pred ecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccc-----------------
Q psy15407 221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA----------------- 283 (604)
Q Consensus 221 L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~----------------- 283 (604)
|+|++|.|+.+.+..|..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|.|+.+|..+
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCC
Confidence 888888888887778888888888888888888874 34566777888888877777766532
Q ss_pred ---ccCcccceeeeccCCCcccccCCCccccccccccccCCccccCCCCcccc
Q psy15407 284 ---FADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRD 333 (604)
Q Consensus 284 ---f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g 333 (604)
+..+++|+.|+|++|||.|+|...|+..|..... ......|..+..+.+
T Consensus 338 ~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~ 389 (597)
T 3oja_B 338 TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV-DDADQHCKIDYQLEH 389 (597)
T ss_dssp CCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTB-CCCCCCCCTTCEEET
T ss_pred CcChhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhcc-ccccccCCcchhccC
Confidence 4556788889999999999998888777654432 223345666554444
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=9.5e-22 Score=214.99 Aligned_cols=219 Identities=19% Similarity=0.273 Sum_probs=168.0
Q ss_pred CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecC--CCccCCCCCCcEEeCCCCcceecCC--CcCCCcccCCc
Q psy15407 96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKS--DGLFGRLPNLIKLDLRRNQVTGIED--NAFEGENDQGC 168 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~--~~~f~~l~~L~~L~Ls~N~i~~i~~--~~f~~l~~L~~ 168 (604)
-+.|+++++.++.+|..+ ...+++|+|++|+|+...+ ...+..+++|++|+|++|+|+.+++ ..|..+++|+.
T Consensus 312 L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp CCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred ceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence 367899999999999765 4678999999999976421 1237889999999999999998864 56889999999
Q ss_pred CCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEec
Q psy15407 169 LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILS 248 (604)
Q Consensus 169 L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls 248 (604)
|++++|.+..++.. +........+.+..+.+ ..+.+..+.+|++|+|++|+|+.++ ..+++|++|+|+
T Consensus 392 L~Ls~N~l~~lp~~--~~~~~~L~~L~Ls~N~l------~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls 459 (549)
T 2z81_A 392 LDISRNTFHPMPDS--CQWPEKMRFLNLSSTGI------RVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYIS 459 (549)
T ss_dssp EECTTCCCCCCCSC--CCCCTTCCEEECTTSCC------SCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred EECCCCCCccCChh--hcccccccEEECCCCCc------ccccchhcCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence 99999876543320 11111222222222222 1222333458999999999998764 478999999999
Q ss_pred CCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccccc-ccCCccccC
Q psy15407 249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDY-VEPGIARCT 326 (604)
Q Consensus 249 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~-~~~~~~~C~ 326 (604)
+|+|+.|+. +..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|. +.|+.+|++... ...+...|.
T Consensus 460 ~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~ 537 (549)
T 2z81_A 460 RNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 537 (549)
T ss_dssp SSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBT
T ss_pred CCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCCeEC
Confidence 999999865 3568999999999999999999999999999999999999999999 688888986543 344567888
Q ss_pred CC
Q psy15407 327 EP 328 (604)
Q Consensus 327 ~P 328 (604)
.|
T Consensus 538 ~~ 539 (549)
T 2z81_A 538 GS 539 (549)
T ss_dssp TT
T ss_pred CC
Confidence 87
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=210.90 Aligned_cols=216 Identities=16% Similarity=0.221 Sum_probs=147.0
Q ss_pred CeEEcCCCCCCcCCC-CCC-----ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407 97 TRVDCSQRGLKEIPK-DIP-----LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG 170 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~-~l~-----~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 170 (604)
+.++++++.+ .+|. .+. ..++.|+|++|.|..++. +..+++|++|+|++|+|+.+.+..|..+++|+.|+
T Consensus 279 ~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 279 SIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp EEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred Eeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 3556666666 5552 111 235666666666654421 25566666666666666665556666666666666
Q ss_pred CCCCCCCcc----------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCC
Q psy15407 171 DNYCPPKCT----------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLS 240 (604)
Q Consensus 171 l~~~~~~~~----------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~ 240 (604)
+++|.+..+ ..++.+.+..+.....++. ..+ .. ..+|++|+|++|+|+...+..+. +
T Consensus 355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~---------~~~-~~-l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK---------GDC-SW-TKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG---------CSC-CC-CTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred ccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc---------chh-cc-CccCCEEECcCCCCCcchhhhhc--c
Confidence 666654432 1223333322221110110 001 11 23899999999999766554443 7
Q ss_pred CCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCcc-ccccccccc-
Q psy15407 241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWL-SEWVKRDYV- 318 (604)
Q Consensus 241 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l-~~~~~~~~~- 318 (604)
+|++|+|++|+|+.++...+ .+++|++|+|++|+|+.+|...|..+++|+.|+|++|||.|+|.+.|| ..|+++...
T Consensus 422 ~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~ 500 (520)
T 2z7x_B 422 RIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 500 (520)
T ss_dssp TCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT
T ss_pred cCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhcccc
Confidence 99999999999999966555 899999999999999999998899999999999999999999999999 999876443
Q ss_pred cCCccccCCCCc
Q psy15407 319 EPGIARCTEPAS 330 (604)
Q Consensus 319 ~~~~~~C~~P~~ 330 (604)
.....+|+.|..
T Consensus 501 ~~~~~~C~~p~~ 512 (520)
T 2z7x_B 501 EQGSAKCSGSGK 512 (520)
T ss_dssp EESCCBBTTTCC
T ss_pred CCCCCCcCCccc
Confidence 445678999843
No 43
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=99.84 E-value=4.9e-22 Score=184.49 Aligned_cols=145 Identities=21% Similarity=0.538 Sum_probs=116.5
Q ss_pred CCCCCCCCCeeeeCCCCceEeeCCCCCcCC---CCCcCCCcCC----CCCCCCCcEEEeCC-----CCeEEecCCCCCCC
Q psy15407 401 YGNPCRNSGTCKLLEEGRFNCECAPGYTGD---RCEINIDDCL----SHKCENNATCVDLI-----QAYECRCAPGFQGE 468 (604)
Q Consensus 401 ~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~---~C~~~~~~C~----~~~C~~~~~C~~~~-----~~~~C~C~~g~~g~ 468 (604)
..+||.+ |+|++ ..++|+|.|++||+|. .|+ ++++|. ..+|.++++|+++. ++|+|.|++||+|.
T Consensus 9 ~~~pC~n-g~C~~-~~g~~~C~C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~ 85 (186)
T 1z1y_A 9 VDTICXN-GQLVQ-MSNHFXCMCNEGLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLX 85 (186)
T ss_dssp TTCCCBT-EEEEE-CSSCEEEEECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEE
T ss_pred CCCCCCC-CEeEC-CCCCeEeECCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccC
Confidence 4567774 48876 3577888888888876 676 778888 67788888898887 78899999999887
Q ss_pred CcccCCCcCCCCCCCCCCCCcee----ecCCCeEEecCCCCcC-----CcCccc-CCCCCCCCC-CCCCEEeeCCCCeEe
Q psy15407 469 FCQTKTPFCAGEYNPCRNGARCL----DHFSHYTCECTPGFSG-----VNCTVN-VDDCVNHMC-QNGGTCVDGINDYTC 537 (604)
Q Consensus 469 ~C~~~~~~C~~~~~~C~~~~~C~----~~~~~~~C~C~~g~~g-----~~c~~~-~~~C~~~~C-~~~~~C~~~~~~y~C 537 (604)
.+...+++|.. .+|.++++|+ +..++|+|.|++||+| ..|+.. +++|.. +| .++++|++..++|+|
T Consensus 86 ~~~C~~d~C~~--~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~-~C~~~~~~C~n~~g~y~C 162 (186)
T 1z1y_A 86 EDTCVLDVCQY--XNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQL-XCNTDNEVCXNVEGVYXC 162 (186)
T ss_dssp TTEEEEGGGTT--CCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCCC-CCCTTTEEEEEETTEEEE
T ss_pred CCCCCCCcCcC--CCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCcccc-cccccCcceecCCCCeee
Confidence 55444677865 3688888888 7777899999999988 777642 588974 89 889999999999999
Q ss_pred eeCCCCccCCCCcC
Q psy15407 538 KCEGDFVGKFCEIA 551 (604)
Q Consensus 538 ~C~~G~~G~~C~~~ 551 (604)
.|++||+|..|+..
T Consensus 163 ~C~~G~~g~~~~~~ 176 (186)
T 1z1y_A 163 QCMEGFTFDXEXNV 176 (186)
T ss_dssp EECTTCEEETTTTE
T ss_pred ECCCCCccCccccc
Confidence 99999999998764
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=1.7e-20 Score=207.58 Aligned_cols=200 Identities=25% Similarity=0.294 Sum_probs=147.9
Q ss_pred CCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCC
Q psy15407 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQG 167 (604)
Q Consensus 88 CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 167 (604)
+|-.|......|+|++++|++||..+|..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++.+|+
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 3433334578999999999999999999999999999999999874 499999999999999999999999999999999
Q ss_pred cCCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeecc-CCCCCC
Q psy15407 168 CLGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS-NFTFSP 238 (604)
Q Consensus 168 ~L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~-~~~f~~ 238 (604)
.|+|++|.+..+ ..++.+.+..+. +...... ..+.. .+|++|+|++|.|+.+. +..|.+
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~---------l~~~~~~--~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETK---------LASLESF--PIGQL-ITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSC---------CCCSSSS--CCTTC-TTCCEEECCSSCCCCCCCCGGGGT
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCc---------ccccccc--ccCCC-CCCCEEeCCCCcccceechHhHhh
Confidence 999999864432 233333333322 1111100 01111 27777888888777643 556777
Q ss_pred CCCCCeEEecCCcceeeeccccCCCCccc----EEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 239 LSKLSQLILSYNKLQCIDRDALAGLKSLR----IISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 239 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~----~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+++|++|+|++|+|+.+++..|..+.+|+ +|+|++|.|+.+++..|... +|+.|+|++|.+.
T Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS 217 (606)
T ss_dssp CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccc
Confidence 78888888888888877777776666554 67888888887777776655 7888888888764
No 45
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=99.83 E-value=4.5e-21 Score=192.36 Aligned_cols=162 Identities=35% Similarity=0.917 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcC
Q psy15407 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFC 477 (604)
Q Consensus 398 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C 477 (604)
..|. ++|.++|+|.. .+.|.|++||+|..|+. +.|. .+|.++|+|++ .+.|.|++||+|..|+. +.|
T Consensus 149 ~~C~-~~C~~~G~C~~----~~~C~C~~G~~G~~C~~--~~C~-~~C~~~G~C~~---~~~C~C~~G~~G~~C~~--~~C 215 (324)
T 2ygq_A 149 AECP-GGCRNGGFCNE----RRICECPDGFHGPHCEK--ALCT-PRCMNGGLCVT---PGFCICPPGFYGVNCDK--ANC 215 (324)
T ss_dssp CCCS-SCCCSSCEECT----TSCEECCTTEESSSSCE--ESSS-SCCCTTCEECS---SCCEECCTTCBTTTTCB--CCC
T ss_pred CCCC-CCCCCCCEECC----CCeEECCCCCcCCCCCC--CCCC-CCCCCCCEEcC---CCEEeCCCCccCCCccc--CcC
Confidence 3553 67999999953 47899999999999985 4575 47999999975 47899999999999975 346
Q ss_pred CCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccC
Q psy15407 478 AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMM 557 (604)
Q Consensus 478 ~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~ 557 (604)
. .+|.++|+|+. .++|.|++||+|..|+ +++|. .+|.++|+|+. .|+|.|++||+|..|+..
T Consensus 216 ~---~~C~~~G~C~~---~~~C~C~~G~~G~~C~--~~~C~-~~C~~~g~C~~---~~~C~C~~G~~G~~C~~~------ 277 (324)
T 2ygq_A 216 S---TTCFNGGTCFY---PGKCICPPGLEGEQCE--ISKCP-QPCRNGGKCIG---KSKCKCSKGYQGDLCSKP------ 277 (324)
T ss_dssp S---SCCCSSCCBSC---SSCBCCCTTCCTTTTC----------------------------------------------
T ss_pred C---CCCCCCCeeCC---CCeeeCCCCccCCCCC--cCcCC-CcCCCCCEECC---CCEEECCCCCcCCCCcCC------
Confidence 5 48999999976 3689999999999997 35675 68999999984 579999999999999842
Q ss_pred CCCCCCCCCCCCCC-CceeCCCCCCCeeeecCCCCcCCCCCCCcc
Q psy15407 558 YPQTSPCQHHDCKN-GICFQPQGSNDYLCKCAPGYSGKESLLQQT 601 (604)
Q Consensus 558 ~~~~~~C~~~~C~~-g~C~~~~g~~~~~C~C~~G~~G~~C~~~~~ 601 (604)
.|. ..|.+ |.|++ .++|.|++||+|++|+....
T Consensus 278 -----~C~-~~C~~~g~C~~-----~~~C~C~~G~~G~~C~~~~~ 311 (324)
T 2ygq_A 278 -----VCE-PGCGAHGTCHE-----PNKCQCQEGWHGRHCNKRYE 311 (324)
T ss_dssp ---------------------------------------------
T ss_pred -----CCC-CCCCCCCEECC-----CCEeECCCCCcCCCCCCCCc
Confidence 343 34644 45875 36899999999999987643
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=207.75 Aligned_cols=221 Identities=20% Similarity=0.216 Sum_probs=148.6
Q ss_pred CCCeEEcCCCCCCcCCCCCCccC----------------------cEEecCCCcceeec--CCCccCCCCCCcEEeCCCC
Q psy15407 95 DGTRVDCSQRGLKEIPKDIPLYT----------------------TELILNDNEIGKIK--SDGLFGRLPNLIKLDLRRN 150 (604)
Q Consensus 95 ~~~~l~cs~~~L~~iP~~l~~~~----------------------~~L~L~~N~i~~i~--~~~~f~~l~~L~~L~Ls~N 150 (604)
.-+.|+++++.++.+|......+ ++|+|++|.|+.+. + ..|..+++|++|+|++|
T Consensus 305 ~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS-QSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEE-HHHHTCSCCCEEECCSC
T ss_pred CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccc-ccccccCccCEEECCCC
Confidence 44667777777777766433344 45555555554432 1 11445555555555555
Q ss_pred cceecCCCcCCCcccCCcCCCCCCCCC---------ccccccEEEccCCccccccccccceeeeeeccccCCccccceee
Q psy15407 151 QVTGIEDNAFEGENDQGCLGDNYCPPK---------CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR 221 (604)
Q Consensus 151 ~i~~i~~~~f~~l~~L~~L~l~~~~~~---------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 221 (604)
.|+.+++. |..+++|+.|++++|... ....++.+.+..+. +... ........ .+|++|
T Consensus 384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---------l~~~--~~~~~~~l-~~L~~L 450 (570)
T 2z63_A 384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---------TRVA--FNGIFNGL-SSLEVL 450 (570)
T ss_dssp SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC---------CEEC--CTTTTTTC-TTCCEE
T ss_pred cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc---------cccc--chhhhhcC-CcCcEE
Confidence 55555544 555555555555554211 11222222222221 1111 01111222 389999
Q ss_pred cCCCCcee-eccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407 222 DLSNNQIG-FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300 (604)
Q Consensus 222 ~Ls~N~i~-~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl 300 (604)
+|++|+|+ ...+..|..+++|++|+|++|+|+.+.+..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 99999997 34457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccc-cccccccc-cCCccccCCCC
Q psy15407 301 YCDCGLAWLS-EWVKRDYV-EPGIARCTEPA 329 (604)
Q Consensus 301 ~CdC~l~~l~-~~~~~~~~-~~~~~~C~~P~ 329 (604)
.|+|...|+. .|++.... ..+..+|.+|.
T Consensus 531 ~~~~~~~~~~~~wl~~~~~~~~~~~~C~~~~ 561 (570)
T 2z63_A 531 DCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 561 (570)
T ss_dssp CCCTTTTHHHHHHHHHTGGGEESCCBBTTTC
T ss_pred cCCCcchHHHHHHHHhccccCCCchhhCCCC
Confidence 9999998887 99876432 22334888873
No 47
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.82 E-value=4.1e-20 Score=189.88 Aligned_cols=143 Identities=22% Similarity=0.468 Sum_probs=111.4
Q ss_pred CCCCC-eeCCCeEEcCCC-CCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCC-CcceecCCCcCCCcc
Q psy15407 88 CPSGC-SCDGTRVDCSQR-GLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRR-NQVTGIEDNAFEGEN 164 (604)
Q Consensus 88 CP~~C-~C~~~~l~cs~~-~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~ 164 (604)
||..| .|.+..|+|+++ +|+.||. | ..+++|++|+|++ |+|+.+++.+|
T Consensus 1 cp~~c~~C~~~~v~~~~~n~l~~ip~-l-----------------------~~~~~L~~L~l~~~n~l~~~~~~~~---- 52 (347)
T 2ifg_A 1 CPDACCPHGSSGLRCTRDGALDSLHH-L-----------------------PGAENLTELYIENQQHLQHLELRDL---- 52 (347)
T ss_dssp CCSSSCCSSSSCEECCSSCCCTTTTT-S-----------------------CSCSCCSEEECCSCSSCCEECGGGS----
T ss_pred CCCcCccccCCEEEcCCCCCCCccCC-C-----------------------CCCCCeeEEEccCCCCCCCcChhHh----
Confidence 89999 999999999998 8999885 4 3345666777764 66666554444
Q ss_pred cCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCe
Q psy15407 165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQ 244 (604)
Q Consensus 165 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~ 244 (604)
.+|++|++
T Consensus 53 ------------------------------------------------------------------------~~l~~L~~ 60 (347)
T 2ifg_A 53 ------------------------------------------------------------------------RGLGELRN 60 (347)
T ss_dssp ------------------------------------------------------------------------CSCCCCSE
T ss_pred ------------------------------------------------------------------------ccccCCCE
Confidence 34556677
Q ss_pred EEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccc--cCCc
Q psy15407 245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV--EPGI 322 (604)
Q Consensus 245 L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~--~~~~ 322 (604)
|+|++|+|+.+++.+|..|++|+.|+|++|+|+.+|+..|..++ |+.|+|.+|+|.|+|.+.||..|++.... ..+.
T Consensus 61 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~ 139 (347)
T 2ifg_A 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139 (347)
T ss_dssp EECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGC
T ss_pred EECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccC
Confidence 77777777777777777888888888888888888888887776 99999999999999999999999876543 3456
Q ss_pred cccCCCCcc
Q psy15407 323 ARCTEPASM 331 (604)
Q Consensus 323 ~~C~~P~~l 331 (604)
.+|..|..+
T Consensus 140 ~~C~~~~~l 148 (347)
T 2ifg_A 140 LQCHGQGPL 148 (347)
T ss_dssp CCCSSSSCS
T ss_pred CCCCCChHH
Confidence 889998733
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=9.9e-20 Score=199.85 Aligned_cols=194 Identities=25% Similarity=0.315 Sum_probs=126.8
Q ss_pred CCee--CCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCc
Q psy15407 91 GCSC--DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC 168 (604)
Q Consensus 91 ~C~C--~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 168 (604)
.|+| ....++|++.+|++||..+|..++.|+|++|.|+.+++. .|.++++|++|+|++|+|+.+++.+|.++++|++
T Consensus 2 ~c~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 80 (570)
T 2z63_A 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80 (570)
T ss_dssp CSEEEETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CccccCCCcEEEeCCCCccccCCCccccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCE
Confidence 4655 356899999999999999999999999999999999874 4999999999999999999999999999999999
Q ss_pred CCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeecc-CCCCCCC
Q psy15407 169 LGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS-NFTFSPL 239 (604)
Q Consensus 169 L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~-~~~f~~l 239 (604)
|+|++|.+..+ ..++.+.+..+.. ...... ..+.. .+|++|+|++|.|+.+. +..|..+
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---------~~l~~~--~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l 148 (570)
T 2z63_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNL---------ASLENF--PIGHL-KTLKELNVAHNLIQSFKLPEYFSNL 148 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCC---------CCSTTC--SCTTC-TTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred EeCcCCcCCccCHhhhcCcccccccccccccc---------ccCCCc--ccccc-ccccEEecCCCccceecChhhhccc
Confidence 99998864322 2222222222211 000000 00111 25555555555555432 3445555
Q ss_pred CCCCeEEecCCcceeeeccccCCCCcc----cEEEccCCccccCCcccccCcccceeeeccCC
Q psy15407 240 SKLSQLILSYNKLQCIDRDALAGLKSL----RIISLHGNDISMIPEGAFADLHAITHLAIGGN 298 (604)
Q Consensus 240 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L----~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 298 (604)
++|++|+|++|+|+.+++..|..+++| +.|+|++|.|+.+++..|..+ +|+.|+|++|
T Consensus 149 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence 555555555555555555555555555 555555555555555555444 4555555555
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.2e-19 Score=184.99 Aligned_cols=185 Identities=21% Similarity=0.292 Sum_probs=108.2
Q ss_pred CeEEcCCCCCCcC-CCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 97 TRVDCSQRGLKEI-PKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 97 ~~l~cs~~~L~~i-P~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
+.|++++|.|+.+ |..+ ...+++|+|++|.|+.++.. ++ ++|++|+|++|+|+.+.+..|.++++|+.|++++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-MP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-hc---ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 4555555555554 3333 23445555555555555432 11 4555555555555555555555555555555555
Q ss_pred CCCCc----------cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCC
Q psy15407 174 CPPKC----------TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLS 243 (604)
Q Consensus 174 ~~~~~----------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~ 243 (604)
|.... ...++.+.+..+. +. .+......+|++|+|++|+|+.+.+..|..+++|+
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~---------l~------~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADTN---------IT------TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSC---------CC------SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred CcCCccCcChhhccCCCCcCEEECCCCc---------cc------cCCccccccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 54321 1122222222111 11 11111123677777777777777777777777777
Q ss_pred eEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 244 QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 244 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+|+|++|+|+.+++..|..+++|++|+|++|+|+.+|.. +..+++|+.|+|++|++.
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCC
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCC
Confidence 777777777777777777777777777777777777663 566777777777777775
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.3e-19 Score=184.94 Aligned_cols=197 Identities=24% Similarity=0.288 Sum_probs=154.4
Q ss_pred CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCccee--cCCCcCCCcccCCcCCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG--IEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~l~~ 173 (604)
-+.|++++|.|+.+|..++..+++|+|++|.|+.+++ ..|.++++|++|+|++|.|+. +.+.+|..+ +|+.|++++
T Consensus 104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCEEECCCCcCCccCccccccCCEEECCCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 3789999999999998888888999999999998876 358899999999999999864 778888888 899999988
Q ss_pred CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcce
Q psy15407 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253 (604)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~ 253 (604)
|.+..++... ......+.+..+.+..... ...... .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+
T Consensus 182 n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~--~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 182 AKLTGIPKDL----PETLNELHLDHNKIQAIEL--EDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp SBCSSCCSSS----CSSCSCCBCCSSCCCCCCT--TSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccCccc----cCCCCEEECCCCcCCccCH--HHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 8655433211 1223333333332222110 011122 38999999999999999999999999999999999999
Q ss_pred eeeccccCCCCcccEEEccCCccccCCcccccCc------ccceeeeccCCCccc
Q psy15407 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADL------HAITHLAIGGNPLYC 302 (604)
Q Consensus 254 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l------~~L~~L~L~~Npl~C 302 (604)
.++. .|..+++|++|+|++|+|+.++...|..+ ..|+.|+|++||+..
T Consensus 255 ~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 255 RVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp BCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred ecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 8854 58899999999999999999998888653 578999999999974
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=6.3e-20 Score=185.53 Aligned_cols=199 Identities=18% Similarity=0.170 Sum_probs=110.5
Q ss_pred CeEEcCCCCCC---cCCCCC--CccCcEEecCC-CcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407 97 TRVDCSQRGLK---EIPKDI--PLYTTELILND-NEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG 170 (604)
Q Consensus 97 ~~l~cs~~~L~---~iP~~l--~~~~~~L~L~~-N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 170 (604)
+.|++++++|+ .+|..+ ...+++|+|++ |.|....+. .|.++++|++|+|++|+|+...+..|..+++|++|+
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 34556666665 355444 23445566653 555422221 155556666666666655555555555555555555
Q ss_pred CCCCCCC--------ccccccEEEccCCccc----------------cccccccceeeeeeccccCCccccceeecCCCC
Q psy15407 171 DNYCPPK--------CTCTVRVLFYDGRAGE----------------CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNN 226 (604)
Q Consensus 171 l~~~~~~--------~~~~l~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 226 (604)
+++|.+. .+..++.+.+..+... +.+..+.+... ....... ..|++|+|++|
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~--~~~~~~~--l~L~~L~Ls~N 207 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK--IPPTFAN--LNLAFVDLSRN 207 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE--CCGGGGG--CCCSEEECCSS
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc--CChHHhC--CcccEEECcCC
Confidence 5555321 1233444444333222 11111111100 0001111 13777777777
Q ss_pred ceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 227 QIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 227 ~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+|+.+.+..|..+++|+.|+|++|+|+...+. |..+++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 77777777777777777777777777766444 666777777777777777555556777777777777777765
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=4.2e-20 Score=179.23 Aligned_cols=197 Identities=17% Similarity=0.224 Sum_probs=151.2
Q ss_pred CCCeEEcCCCCCCcCCCCC---CccCcEEecCCCc-ceeecCCCccCCCCCCcEEeCCC-CcceecCCCcCCCcccCCcC
Q psy15407 95 DGTRVDCSQRGLKEIPKDI---PLYTTELILNDNE-IGKIKSDGLFGRLPNLIKLDLRR-NQVTGIEDNAFEGENDQGCL 169 (604)
Q Consensus 95 ~~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~-i~~i~~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L 169 (604)
.-+.|++++++|+.+|... ...+++|+|++|. |+.|++. .|.++++|++|+|++ |+|+.+++.+|.++++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3578999999999998843 4567999999997 9999874 499999999999999 99999999999999999999
Q ss_pred CCCCCCCCccccccEEEccCCccccccccc-cceeeeeeccccCCccccce-eecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407 170 GDNYCPPKCTCTVRVLFYDGRAGECYIAVE-LFSSRIRVSYYVGNYPVSTM-YRDLSNNQIGFLSNFTFSPLSKLSQLIL 247 (604)
Q Consensus 170 ~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~i~~l~~~~f~~l~~L~~L~L 247 (604)
++++|.+..++.+..+.-......+.+..+ .+.... ...+ .. ..+|+ .|+|++|+|+.++...|.. ++|+.|+|
T Consensus 111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~-~~-l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-VNAF-QG-LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-TTTT-TT-TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCccccccccccccccccEEECCCCcchhhcC-cccc-cc-hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 999987655432110000000012222222 111111 0111 11 23889 9999999999999988887 89999999
Q ss_pred cCCc-ceeeeccccCCC-CcccEEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407 248 SYNK-LQCIDRDALAGL-KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNP 299 (604)
Q Consensus 248 s~N~-l~~i~~~~f~~l-~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np 299 (604)
++|+ |+.+++.+|..+ ++|+.|+|++|+|+.+|+. .+++|+.|++.++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9995 999999999999 9999999999999999986 46678888888763
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=2.1e-19 Score=179.54 Aligned_cols=176 Identities=17% Similarity=0.143 Sum_probs=143.1
Q ss_pred ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC 194 (604)
Q Consensus 115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~ 194 (604)
..+++|++++|.|+.||.. +. ++|+.|+|++|+|+.+.+.+|.++++|+.|+|++|.+..+... .....+..+
T Consensus 10 ~~l~~l~~~~~~l~~ip~~--~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L~~L 82 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPD--LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTL 82 (290)
T ss_dssp TTCCEEECTTSCCSSCCSC--CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTCCEE
T ss_pred CCccEEECCCCCCCcCCCC--CC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcCCEE
Confidence 3578999999999999864 33 7899999999999999999999999999999999976543321 111122223
Q ss_pred ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCC
Q psy15407 195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274 (604)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 274 (604)
.+..+.+.. +......+ .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus 83 ~Ls~N~l~~---l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 83 DLSHNQLQS---LPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp ECCSSCCSS---CCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCcCCc---CchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 333332221 11112223 38999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccCcccceeeeccCCCcc
Q psy15407 275 DISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 275 ~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+|+.+++.+|..+++|+.|+|++|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 999999999999999999999999987
No 54
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=188.56 Aligned_cols=158 Identities=35% Similarity=0.945 Sum_probs=77.8
Q ss_pred CCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCC
Q psy15407 363 KSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSH 442 (604)
Q Consensus 363 ~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~ 442 (604)
+++|.++|+|.. .+.|.|++||+|..|+. +.|. .+|.++|+|.. .+.|.|++||+|..|+. +.|. .
T Consensus 152 ~~~C~~~G~C~~----~~~C~C~~G~~G~~C~~--~~C~-~~C~~~G~C~~----~~~C~C~~G~~G~~C~~--~~C~-~ 217 (324)
T 2ygq_A 152 PGGCRNGGFCNE----RRICECPDGFHGPHCEK--ALCT-PRCMNGGLCVT----PGFCICPPGFYGVNCDK--ANCS-T 217 (324)
T ss_dssp SSCCCSSCEECT----TSCEECCTTEESSSSCE--ESSS-SCCCTTCEECS----SCCEECCTTCBTTTTCB--CCCS-S
T ss_pred CCCCCCCCEECC----CCeEECCCCCcCCCCCC--CCCC-CCCCCCCEEcC----CCEEeCCCCccCCCccc--CcCC-C
Confidence 368999999984 37999999999999985 4576 47999999964 46899999999999984 4575 6
Q ss_pred CCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCC
Q psy15407 443 KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMC 522 (604)
Q Consensus 443 ~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C 522 (604)
+|.++|+|++ .+.|.|++||+|..|+. +.|. .+|.++|+|+. .++|.|++||+|..|+. +.|. .+|
T Consensus 218 ~C~~~G~C~~---~~~C~C~~G~~G~~C~~--~~C~---~~C~~~g~C~~---~~~C~C~~G~~G~~C~~--~~C~-~~C 283 (324)
T 2ygq_A 218 TCFNGGTCFY---PGKCICPPGLEGEQCEI--SKCP---QPCRNGGKCIG---KSKCKCSKGYQGDLCSK--PVCE-PGC 283 (324)
T ss_dssp CCCSSCCBSC---SSCBCCCTTCCTTTTC---------------------------------------------------
T ss_pred CCCCCCeeCC---CCeeeCCCCccCCCCCc--CcCC---CcCCCCCEECC---CCEEECCCCCcCCCCcC--CCCC-CCC
Confidence 8999999976 37899999999999974 4575 58999999974 57999999999999974 5675 579
Q ss_pred CCCCEEeeCCCCeEeeeCCCCccCCCCcC
Q psy15407 523 QNGGTCVDGINDYTCKCEGDFVGKFCEIA 551 (604)
Q Consensus 523 ~~~~~C~~~~~~y~C~C~~G~~G~~C~~~ 551 (604)
.++|+|++ .++|.|++||+|..|+..
T Consensus 284 ~~~g~C~~---~~~C~C~~G~~G~~C~~~ 309 (324)
T 2ygq_A 284 GAHGTCHE---PNKCQCQEGWHGRHCNKR 309 (324)
T ss_dssp -----------------------------
T ss_pred CCCCEECC---CCEeECCCCCcCCCCCCC
Confidence 99999986 469999999999999875
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=205.15 Aligned_cols=210 Identities=23% Similarity=0.273 Sum_probs=140.0
Q ss_pred CCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCC------------------------CccCCCCCCcEEe
Q psy15407 91 GCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD------------------------GLFGRLPNLIKLD 146 (604)
Q Consensus 91 ~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~------------------------~~f~~l~~L~~L~ 146 (604)
.|++.+..++|++++|+.||. +|..+++|+|++|.|+.+.+. ..|.+|++|++|+
T Consensus 1 ~C~~~~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 1 SCSFDGRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp CCBTTTEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred CceEeceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 367777788888888888888 888888888888888766431 2377778888888
Q ss_pred CCCCcceecCCCcCCCcccCCcCCCCCCCCC----------ccccccEEEccCCcccc----------------cccccc
Q psy15407 147 LRRNQVTGIEDNAFEGENDQGCLGDNYCPPK----------CTCTVRVLFYDGRAGEC----------------YIAVEL 200 (604)
Q Consensus 147 Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~----------~~~~l~~l~~~~~~~~~----------------~~~~~~ 200 (604)
|++|+|+.+.+.+|.++.+|+.|+|++|.+. .+..|+.+.+..+.... .+..+.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 8888888888888888888888887776432 23345555544332110 000000
Q ss_pred ceee--------------------------ee--------------ecc-------------------------------
Q psy15407 201 FSSR--------------------------IR--------------VSY------------------------------- 209 (604)
Q Consensus 201 ~~~~--------------------------~~--------------~~~------------------------------- 209 (604)
+... .. +..
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 0000 00 000
Q ss_pred --------------------ccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEE
Q psy15407 210 --------------------YVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRII 269 (604)
Q Consensus 210 --------------------~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 269 (604)
+.+....+|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.+.+.+|.++++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 000001357777777777777777778888888888888888888877788888888888
Q ss_pred EccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 270 SLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 270 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence 88888887777777777777777777777663
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=4.6e-20 Score=187.73 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=140.7
Q ss_pred CCeEEcCCCCCCcCCCCCC--ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDIP--LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l~--~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
.+.|++++++|+.||..+. ..+++|+|++|.|+.||.. |..+++|++|+|++|+|+.|+ ..|..+++|+.|++++
T Consensus 83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH--HhccCCCCEEECCCCccccCc-HHHhcCcCCCEEECCC
Confidence 3689999999999998874 5779999999999988764 899999999999999999874 5689999999999988
Q ss_pred CCCCc-ccc-ccE------EEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeE
Q psy15407 174 CPPKC-TCT-VRV------LFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQL 245 (604)
Q Consensus 174 ~~~~~-~~~-l~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L 245 (604)
|.... ++. +.. +.-...+..+.+..+.+. .+......++ +|++|+|++|+|+.+++ .|..+++|++|
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~-~L~~L~L~~N~l~~l~~-~l~~l~~L~~L 234 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQ-NLKSLKIRNSPLSALGP-AIHHLPKLEEL 234 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCT-TCCEEEEESSCCCCCCG-GGGGCTTCCEE
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---cchHhhcCCC-CCCEEEccCCCCCcCch-hhccCCCCCEE
Confidence 64221 111 000 001112222222222222 1111112222 78888888888887766 47778888888
Q ss_pred EecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 246 ILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 246 ~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+|++|++....+..|..+++|++|+|++|++....+..|..+++|+.|+|++|++.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 88888877777778888888888888887766555556778888888888887764
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=7.4e-20 Score=205.31 Aligned_cols=182 Identities=21% Similarity=0.247 Sum_probs=158.4
Q ss_pred CCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407 91 GCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG 170 (604)
Q Consensus 91 ~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 170 (604)
.|.|.++.|+|++++|++||..+|..+++|+|++|.|+.+++. .|.++++|++|+|++|.|+.+.+.+|.++++|+.|+
T Consensus 1 ~C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 1 KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79 (680)
T ss_dssp ---CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred CceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence 3788889999999999999999999999999999999999874 499999999999999999999999999999999999
Q ss_pred CCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCC
Q psy15407 171 DNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYN 250 (604)
Q Consensus 171 l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N 250 (604)
|++|.+..+.. ..... ..+|++|+|++|+|+.+++..|..+++|++|+|++|
T Consensus 80 L~~n~l~~l~~---------------------------~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 80 LQHNELSQLSD---------------------------KTFAF-CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp CCSSCCCCCCT---------------------------TTTTT-CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred CCCCccCccCh---------------------------hhhcc-CCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 99875432110 00111 238999999999999999999999999999999999
Q ss_pred cceeeeccccCCCCcccEEEccCCccccCCccccc--CcccceeeeccCCCcc
Q psy15407 251 KLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA--DLHAITHLAIGGNPLY 301 (604)
Q Consensus 251 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~--~l~~L~~L~L~~Npl~ 301 (604)
+|+.+.+..|..+++|++|+|++|+|+.+++..|. .+++|+.|+|++|.+.
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999999999999999999999999999887665 4588999999999875
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=8.3e-20 Score=199.58 Aligned_cols=198 Identities=19% Similarity=0.226 Sum_probs=141.2
Q ss_pred CCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ 166 (604)
Q Consensus 87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 166 (604)
.||..|.| ++++++|++||..++..+++|+|++|+|+.+++. .|.++++|++|+|++|+|+.+++.+|.++.+|
T Consensus 3 ~C~~~~~c-----~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 3 SCDASGVC-----DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSL 76 (549)
T ss_dssp EECTTSEE-----ECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCCceE-----ECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccC
Confidence 46777665 7889999999999999999999999999999764 49999999999999999999999999999999
Q ss_pred CcCCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCc-eeeccCCCCC
Q psy15407 167 GCLGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ-IGFLSNFTFS 237 (604)
Q Consensus 167 ~~L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-i~~l~~~~f~ 237 (604)
+.|++++|.+... ..++.+.+..+... .. ......... .+|++|+|++|. +..+++..|.
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~-~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~ 145 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ---------TL-GVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFA 145 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS---------SS-CSSCSCTTC-TTCCEEEEEESSSCCEECTTTTT
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCccc---------cc-chhhhhhcc-CCccEEECCCCccccccCHhhhh
Confidence 9999999865432 23344444333211 10 000011111 266677777776 5666666677
Q ss_pred CCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 238 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
.+++|++|+|++|+|+.+.+..|..+++|++|+|+.|.+..++...+..+++|+.|+|++|.+.
T Consensus 146 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred cccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 7777777777777777766666666666666666666666666555555666777777776654
No 59
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.8e-19 Score=193.77 Aligned_cols=181 Identities=18% Similarity=0.219 Sum_probs=134.9
Q ss_pred CCee-CCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcC
Q psy15407 91 GCSC-DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCL 169 (604)
Q Consensus 91 ~C~C-~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 169 (604)
.|.+ ..+.|++++++|+.||..++..+++|+|++|.|+.|| . .+++|++|+|++|+|+.|+. |.. +|+.|
T Consensus 55 ~C~~~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L 125 (571)
T 3cvr_A 55 ECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E----LPASLEYLDACDNRLSTLPE--LPA--SLKHL 125 (571)
T ss_dssp HHHHTTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCC--CCT--TCCEE
T ss_pred ccccCCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c----ccCCCCEEEccCCCCCCcch--hhc--CCCEE
Confidence 3444 3578999999999999988888999999999999887 2 36899999999999999877 554 89999
Q ss_pred CCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecC
Q psy15407 170 GDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSY 249 (604)
Q Consensus 170 ~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~ 249 (604)
+|++|.+..++. ....+..+.+..+.+.... . ...+|++|+|++|+|+.++. |. ++|+.|+|++
T Consensus 126 ~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp------~-~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 126 DVDNNQLTMLPE-----LPALLEYINADNNQLTMLP------E-LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVST 189 (571)
T ss_dssp ECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCC------C-CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCS
T ss_pred ECCCCcCCCCCC-----cCccccEEeCCCCccCcCC------C-cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcC
Confidence 999987665443 1122333333333332211 1 23488899999999988776 55 8899999999
Q ss_pred CcceeeeccccCCCCcc-------cEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 250 NKLQCIDRDALAGLKSL-------RIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 250 N~l~~i~~~~f~~l~~L-------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
|+|+.|+. |.. +| +.|+|++|+|+.||..++. +++|+.|+|++|+|.
T Consensus 190 N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 190 NLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLS 243 (571)
T ss_dssp SCCSSCCC--CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCC
T ss_pred CCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCC
Confidence 99998865 443 66 8999999999998886555 888999999888885
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=2.8e-20 Score=188.08 Aligned_cols=189 Identities=17% Similarity=0.156 Sum_probs=145.9
Q ss_pred CCeEEcCCCCCC-cCCCCC----CccCcEEecCCCcceeecCCCccCCC-----CCCcEEeCCCCcceecCCCcCCCccc
Q psy15407 96 GTRVDCSQRGLK-EIPKDI----PLYTTELILNDNEIGKIKSDGLFGRL-----PNLIKLDLRRNQVTGIEDNAFEGEND 165 (604)
Q Consensus 96 ~~~l~cs~~~L~-~iP~~l----~~~~~~L~L~~N~i~~i~~~~~f~~l-----~~L~~L~Ls~N~i~~i~~~~f~~l~~ 165 (604)
-+.|++++|+|+ .+|..+ ...+++|+|++|+|+.++. .|..+ ++|++|+|++|+|+.+++..|..+++
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA--WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSS--HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhH--HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 378999999998 688765 4567999999999998843 37776 99999999999999999999999999
Q ss_pred CCcCCCCCCCCC------------ccccccEEEccCCccccccccccceeeeeec-cccCCccccceeecCCCCceeecc
Q psy15407 166 QGCLGDNYCPPK------------CTCTVRVLFYDGRAGECYIAVELFSSRIRVS-YYVGNYPVSTMYRDLSNNQIGFLS 232 (604)
Q Consensus 166 L~~L~l~~~~~~------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~i~~l~ 232 (604)
|+.|++++|.+. .+..++.+.+..+. +.....+. .+.... .+|++|+|++|+|+.+.
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~---------l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG---------METPSGVCSALAAAR-VQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC---------CCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc---------CcchHHHHHHHHhcC-CCCCEEECCCCcCCccc
Confidence 999999998742 22334444444332 22111111 011111 38999999999999876
Q ss_pred C-CCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 233 N-FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 233 ~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+ ..+..+++|++|+|++|+|+.++...+ ++|++|+|++|+|+.+|. |..+++|+.|+|++|+|.
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred chhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence 3 567788999999999999998865444 899999999999999965 889999999999999985
No 61
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=159.20 Aligned_cols=126 Identities=40% Similarity=0.970 Sum_probs=88.0
Q ss_pred CCCCCCCCCCCCeeeeCCC-CceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCc
Q psy15407 398 DACYGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPF 476 (604)
Q Consensus 398 ~~C~~~~C~~~~~C~~~~~-~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~ 476 (604)
|+|..+||.++++|..... ++|.|.|++||+|..|+. +.++... +..| ..+++
T Consensus 1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~-~~~~~~~------------------------~~~c-~~~~~ 54 (143)
T 4d90_A 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSS-VVEVASD------------------------EEEP-TSAGP 54 (143)
T ss_dssp --CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCS-CCCCTTT------------------------TTSC-CCCCT
T ss_pred CcCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCcc-Ccccccc------------------------cccc-ccCCc
Confidence 3555666666666654322 456666666666666652 1111110 0011 13455
Q ss_pred CCCCCCCCCCCCcee-------ecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407 477 CAGEYNPCRNGARCL-------DHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549 (604)
Q Consensus 477 C~~~~~~C~~~~~C~-------~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~ 549 (604)
|.. ++|.++++|+ +..++|+|.|++||+|..|+.++++|..++|.++++|++..++|+|.|++||+|+.|+
T Consensus 55 C~~--~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~c~ 132 (143)
T 4d90_A 55 CTP--NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132 (143)
T ss_dssp TSS--CCCCTTCEEEECCCEETTEECCEEEECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBSTTSC
T ss_pred CCC--CCCCCCCEecCCCccccCCCCCeEeECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCccCCce
Confidence 653 5788889998 6668999999999999999889999999999999999999999999999999999998
Q ss_pred cC
Q psy15407 550 IA 551 (604)
Q Consensus 550 ~~ 551 (604)
..
T Consensus 133 ~~ 134 (143)
T 4d90_A 133 YK 134 (143)
T ss_dssp BC
T ss_pred ec
Confidence 64
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=9.6e-20 Score=184.58 Aligned_cols=93 Identities=23% Similarity=0.260 Sum_probs=82.4
Q ss_pred ccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeec
Q psy15407 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295 (604)
Q Consensus 216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 295 (604)
.+|++|+|++|.|+.++... .+++|++|+|++|+|+.+++. |..+++|+.|+|++|+|+.+|.. |..+++|+.|+|
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l 244 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDL 244 (317)
T ss_dssp TTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEEC
T ss_pred CcCCEEECCCCcCccccccc--ccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEEEc
Confidence 38999999999999997644 489999999999999999765 88999999999999999999874 788999999999
Q ss_pred cCCCcccccCCCccccc
Q psy15407 296 GGNPLYCDCGLAWLSEW 312 (604)
Q Consensus 296 ~~Npl~CdC~l~~l~~~ 312 (604)
++|+|.|++...|+..+
T Consensus 245 ~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp TTCCCBHHHHHHHHHTC
T ss_pred cCCCccCcCHHHHHhcc
Confidence 99999999776666543
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1.2e-19 Score=183.57 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=147.7
Q ss_pred CeEEcCC-CCCC-cCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 97 TRVDCSQ-RGLK-EIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 97 ~~l~cs~-~~L~-~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
+.|++++ ++++ .+|..+ ...+++|+|++|.|+...+. .|.++++|++|+|++|+|+.+.+..|..+++|+.|+++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 6788884 7776 667665 35668888888888744332 37888888888888888887777778888888888888
Q ss_pred CCCCC--------ccc-cccEEEccCCccccccc--------------cccceeeeeeccccCCccccceeecCCCCcee
Q psy15407 173 YCPPK--------CTC-TVRVLFYDGRAGECYIA--------------VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIG 229 (604)
Q Consensus 173 ~~~~~--------~~~-~l~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~ 229 (604)
+|.+. ... .++.+.+..+.....++ .+.+.. ......... .+|++|+|++|+|+
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~--~~~~~~~~l-~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG--DASVLFGSD-KNTQKIHLAKNSLA 234 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEE--CCGGGCCTT-SCCSEEECCSSEEC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccC--cCCHHHhcC-CCCCEEECCCCcee
Confidence 87643 112 55666666554331111 111111 011112222 38999999999999
Q ss_pred eccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccccc
Q psy15407 230 FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC 304 (604)
Q Consensus 230 ~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC 304 (604)
...+. |..+++|++|+|++|+|+...+..|..+++|++|+|++|+|+...+.. ..+++|+.|+|++||+.|.-
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 77664 888999999999999999888899999999999999999999444433 78999999999999998864
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=1.3e-18 Score=181.66 Aligned_cols=201 Identities=17% Similarity=0.184 Sum_probs=144.8
Q ss_pred CeEEcCCCCCCcCCCC-C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKD-I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~-l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
+.|+++++.|+.+|.. + ...+++|+|++|.|+.+++. +|.++++|++|+|++|+|+.+++..|..+++|+.|++++
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 150 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 150 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCC
Confidence 7899999999988763 3 45679999999999998764 489999999999999999999999999999999999998
Q ss_pred CCCC--------ccccccEEEccCCccccc------------cccccceee-------------eeeccccCCcccccee
Q psy15407 174 CPPK--------CTCTVRVLFYDGRAGECY------------IAVELFSSR-------------IRVSYYVGNYPVSTMY 220 (604)
Q Consensus 174 ~~~~--------~~~~l~~l~~~~~~~~~~------------~~~~~~~~~-------------~~~~~~~~~~~~~L~~ 220 (604)
|.+. ....++.+.+..+..... +..+.+... ..+..+......+|+.
T Consensus 151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 230 (390)
T 3o6n_A 151 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 230 (390)
T ss_dssp SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCE
T ss_pred CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccE
Confidence 8533 345667777765533211 111111000 0011111122235666
Q ss_pred ecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407 221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300 (604)
Q Consensus 221 L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl 300 (604)
|+|++|.|+.++ .|..+++|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.++.. +..+++|+.|+|++|++
T Consensus 231 L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 231 LKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp EECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSCCTTCCEEECCSSCC
T ss_pred EECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCCCCCCCEEECCCCcc
Confidence 666666666652 567778888888888888888888888888888888888888887663 56778888888888877
Q ss_pred c
Q psy15407 301 Y 301 (604)
Q Consensus 301 ~ 301 (604)
.
T Consensus 308 ~ 308 (390)
T 3o6n_A 308 L 308 (390)
T ss_dssp C
T ss_pred e
Confidence 5
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=5.4e-19 Score=178.16 Aligned_cols=186 Identities=20% Similarity=0.238 Sum_probs=137.2
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~ 174 (604)
+.|++++++++.+|. + ...+++|+|++|.|+.+++ |..+++|++|+|++|+|+.++ .|..+++|+.|++++|
T Consensus 44 ~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 44 TTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST 117 (308)
T ss_dssp CEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCC
Confidence 678888888887773 4 4567888888888887764 778888888888888888774 5777888888888877
Q ss_pred CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407 175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC 254 (604)
Q Consensus 175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~ 254 (604)
.+..+..+ ....++..+.+..+.+.....+ ..+ .+|++|+|++|+|+.+++ |..+++|+.|+|++|+|+.
T Consensus 118 ~l~~~~~l---~~l~~L~~L~l~~n~l~~~~~l----~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 118 QITDVTPL---AGLSNLQVLYLDLNQITNISPL----AGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CCCCCGGG---TTCTTCCEEECCSSCCCCCGGG----GGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCchhh---cCCCCCCEEECCCCccCcCccc----cCC-CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 65443221 1111222222222222222111 112 389999999999999876 8899999999999999999
Q ss_pred eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
+++ |..+++|++|+|++|+|+.+++ |..+++|+.|+|++|+|..
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 865 8889999999999999999885 7889999999999999964
No 66
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=99.78 E-value=4.8e-19 Score=192.76 Aligned_cols=166 Identities=28% Similarity=0.687 Sum_probs=78.7
Q ss_pred CCcCCCCCCCCeeecCCCCcee---eeCCCCCcCCCCcccC--------CCCCCCC----CCCCCeeeeCCCCceEeeCC
Q psy15407 360 ACYKSPCTNQGVCEPLPERQYQ---CRCTPGYHGQHCEFMI--------DACYGNP----CRNSGTCKLLEEGRFNCECA 424 (604)
Q Consensus 360 ~C~~~~C~~~g~C~~~~~~~~~---C~C~~g~~G~~c~~~~--------~~C~~~~----C~~~~~C~~~~~~~~~C~C~ 424 (604)
+|...||.++++|.+.. |.+. |.|++||+|..|+.++ ++|...+ |.++|+|. .+.|.|+
T Consensus 436 ~C~~~pc~n~~~C~~g~-G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~-----~g~C~C~ 509 (690)
T 3fcs_B 436 ACQAQAEPNSHRCNNGN-GTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL-----CGQCVCH 509 (690)
T ss_dssp GGGTTCCTTCTTTTTTS-EEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEEC-----SSSEEEC
T ss_pred CCcCCCCCCCCcccCCC-CeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEE-----CCeeEee
Confidence 45555555555554432 4444 5555555555555443 3444432 44455553 1345555
Q ss_pred ----CCCcCCCCCcCCCcCCC---CCCCCCcEEEeCCCCeEEecCCCCCCCCcc--cCCCcCCCCC-CCCCCCCceeecC
Q psy15407 425 ----PGYTGDRCEINIDDCLS---HKCENNATCVDLIQAYECRCAPGFQGEFCQ--TKTPFCAGEY-NPCRNGARCLDHF 494 (604)
Q Consensus 425 ----~g~~g~~C~~~~~~C~~---~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~--~~~~~C~~~~-~~C~~~~~C~~~~ 494 (604)
+||.|..|+.++++|.. .+|.++|+|++ +.|.|.+||+|..|+ ...+.|.... .+|.++|+|++
T Consensus 510 ~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~-- 583 (690)
T 3fcs_B 510 SSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC-- 583 (690)
T ss_dssp CCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET--
T ss_pred cCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC--
Confidence 55555555544445543 24555555543 555555555555554 3344444321 34555555533
Q ss_pred CCeEEec-CCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407 495 SHYTCEC-TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549 (604)
Q Consensus 495 ~~~~C~C-~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~ 549 (604)
.+|.| .+||+|..|+. ...| ..+|.+++.|++ |..||+|..|+
T Consensus 584 --g~C~C~~~Gy~G~~Ce~-C~~C-~~~C~~~g~Cv~--------C~~g~tG~~C~ 627 (690)
T 3fcs_B 584 --GSCVCIQPGSYGDTCEK-CPTC-PDACTFKKECVE--------CKKFDRGALHD 627 (690)
T ss_dssp --TEEECCSTTCBSTTSCB-CTTS-CCTTTSCCGGGT--------TTTTCCSSSSS
T ss_pred --CEEECCCCCccCCCcCc-CCCC-CCCCCCCCCccc--------CCCCCccCCCC
Confidence 14555 55555555542 1223 234555444443 55555555444
No 67
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=156.50 Aligned_cols=114 Identities=34% Similarity=0.910 Sum_probs=80.9
Q ss_pred CCCcCCCCCCCCeeecCCC-CceeeeCCCCCcCCCCcc------------cCCCCCCCCCCCCCeeeeC------CCCce
Q psy15407 359 NACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEF------------MIDACYGNPCRNSGTCKLL------EEGRF 419 (604)
Q Consensus 359 ~~C~~~~C~~~g~C~~~~~-~~~~C~C~~g~~G~~c~~------------~~~~C~~~~C~~~~~C~~~------~~~~~ 419 (604)
++|..+||.++|+|++... +.|+|.|++||+|..|+. ++++|..+||.++++|... ..++|
T Consensus 1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~ 80 (143)
T 4d90_A 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGY 80 (143)
T ss_dssp --CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCE
T ss_pred CcCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCCe
Confidence 4688899999999997653 579999999999999975 3456666677777777631 23567
Q ss_pred EeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCccc
Q psy15407 420 NCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472 (604)
Q Consensus 420 ~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~ 472 (604)
.|.|++||.|..|+.++++|...+|.++++|+++.++|+|.|++||+|+.|+.
T Consensus 81 ~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~c~~ 133 (143)
T 4d90_A 81 VCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQY 133 (143)
T ss_dssp EEECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBSTTSCB
T ss_pred EeECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCccCCcee
Confidence 77777777777776667777777777777777777777777777777776653
No 68
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=99.77 E-value=3.8e-19 Score=193.55 Aligned_cols=138 Identities=28% Similarity=0.770 Sum_probs=116.9
Q ss_pred CCCCCCCCCCeeeeCCCCceE---eeCCCCCcCCCCCcCC--------CcCCCC----CCCCCcEEEeCCCCeEEecC--
Q psy15407 400 CYGNPCRNSGTCKLLEEGRFN---CECAPGYTGDRCEINI--------DDCLSH----KCENNATCVDLIQAYECRCA-- 462 (604)
Q Consensus 400 C~~~~C~~~~~C~~~~~~~~~---C~C~~g~~g~~C~~~~--------~~C~~~----~C~~~~~C~~~~~~~~C~C~-- 462 (604)
|...||.+++.|.+ ..|.|. |.|.+||.|..|+.++ ++|... +|.++|+|++ +.|.|.
T Consensus 437 C~~~pc~n~~~C~~-g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----g~C~C~~~ 511 (690)
T 3fcs_B 437 CQAQAEPNSHRCNN-GNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC----GQCVCHSS 511 (690)
T ss_dssp GGTTCCTTCTTTTT-TSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS----SSEEECCC
T ss_pred CcCCCCCCCCcccC-CCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC----CeeEeecC
Confidence 44566777777764 356666 9999999999999776 889863 5999999997 479999
Q ss_pred --CCCCCCCcccCCCcCCCC-CCCCCCCCceeecCCCeEEecCCCCcCCcCc--ccCCCCCC---CCCCCCCEEeeCCCC
Q psy15407 463 --PGFQGEFCQTKTPFCAGE-YNPCRNGARCLDHFSHYTCECTPGFSGVNCT--VNVDDCVN---HMCQNGGTCVDGIND 534 (604)
Q Consensus 463 --~g~~g~~C~~~~~~C~~~-~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~--~~~~~C~~---~~C~~~~~C~~~~~~ 534 (604)
+||.|..|+.+...|... ..+|.++|.|++ ++|.|.+||+|..|+ .+++.|.. .+|.++|+|+..
T Consensus 512 ~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~g--- 584 (690)
T 3fcs_B 512 DFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECG--- 584 (690)
T ss_dssp SSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEETT---
T ss_pred CCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeCC---
Confidence 999999999888889842 368999999988 689999999999999 67888975 579999999863
Q ss_pred eEeee-CCCCccCCCCc
Q psy15407 535 YTCKC-EGDFVGKFCEI 550 (604)
Q Consensus 535 y~C~C-~~G~~G~~C~~ 550 (604)
+|.| ++||+|..|+.
T Consensus 585 -~C~C~~~Gy~G~~Ce~ 600 (690)
T 3fcs_B 585 -SCVCIQPGSYGDTCEK 600 (690)
T ss_dssp -EEECCSTTCBSTTSCB
T ss_pred -EEECCCCCccCCCcCc
Confidence 8999 99999999997
No 69
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=1.8e-18 Score=196.34 Aligned_cols=87 Identities=23% Similarity=0.243 Sum_probs=79.7
Q ss_pred ccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeec
Q psy15407 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295 (604)
Q Consensus 216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 295 (604)
.+|++|||++|+|+...+..|+.+++|+.|+|++|+|++..|..|..+++|+.|||++|+|+...+..|..+++|+.|+|
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 37889999999999888889999999999999999999888999999999999999999999777778999999999999
Q ss_pred cCCCccc
Q psy15407 296 GGNPLYC 302 (604)
Q Consensus 296 ~~Npl~C 302 (604)
++|++.-
T Consensus 712 s~N~l~g 718 (768)
T 3rgz_A 712 SNNNLSG 718 (768)
T ss_dssp CSSEEEE
T ss_pred cCCcccc
Confidence 9999874
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.5e-18 Score=169.92 Aligned_cols=170 Identities=24% Similarity=0.313 Sum_probs=134.1
Q ss_pred cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCc--------cccccEEEc
Q psy15407 116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC--------TCTVRVLFY 187 (604)
Q Consensus 116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~--------~~~l~~l~~ 187 (604)
..+.++++++.|+.||.. +. ++|++|+|++|+|+.+++.+|.++++|+.|++++|.+.. +..++.+.+
T Consensus 17 ~~~~l~~~~~~l~~ip~~--~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN--IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSC--CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCC--CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 457899999999999863 33 789999999999999999999999999999999886432 233444444
Q ss_pred cCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCccc
Q psy15407 188 DGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267 (604)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 267 (604)
..+.. .... . ...... .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+
T Consensus 93 ~~n~l---------~~~~-~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 93 TDNKL---------QALP-I-GVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp CSSCC---------CCCC-T-TTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcC---------CcCC-H-hHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 33321 1110 0 011112 3788899999999998888888999999999999999998888888899999
Q ss_pred EEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 268 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
.|+|++|+|+.+++..|..+++|++|+|++|++.
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 9999999999998888888899999999998875
No 71
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=99.77 E-value=5.8e-20 Score=167.07 Aligned_cols=150 Identities=29% Similarity=0.728 Sum_probs=95.3
Q ss_pred CCceEeeCCCCCcCCCCCcCCCcCCCC-CCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCC-CCCceeec
Q psy15407 416 EGRFNCECAPGYTGDRCEINIDDCLSH-KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCR-NGARCLDH 493 (604)
Q Consensus 416 ~~~~~C~C~~g~~g~~C~~~~~~C~~~-~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~-~~~~C~~~ 493 (604)
...+.|.|++||.|..|+. +|.+. .|.++++|.. ...|.|.+||+|..|+. +.|.. .|. .++.|++
T Consensus 14 ~~~~~c~C~~g~~G~~C~~---~C~~~~~c~~~g~C~~---~g~C~C~~G~~G~~C~~--~~C~~---~C~~~~g~C~~- 81 (169)
T 2vj2_A 14 EGRSAVTCDDYYYGFGCNK---FCRPRDDFFGHYACDQ---NGNKTCMEGWMGPECNR--AICRQ---GCSPKHGSCKL- 81 (169)
T ss_dssp -------CCTTEETTTTCE---ECCCEEETTEEEEECS---SCCEEECTTEESTTSCE--ECCCT---TCCTTTEECSS-
T ss_pred ccCeeeeCCCcCcCCCccc---ccCCCCCcCCCCEeCC---CCeeECCCCCcCCCCCC--CCCCC---CCCCCCcccCC-
Confidence 3456777888888877762 35432 4666677743 34688888888887764 23542 454 4556754
Q ss_pred CCCeEEecCCCCcCCcCcccCCCCCCCC-CCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCC-CCCCC
Q psy15407 494 FSHYTCECTPGFSGVNCTVNVDDCVNHM-CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH-HDCKN 571 (604)
Q Consensus 494 ~~~~~C~C~~g~~g~~c~~~~~~C~~~~-C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~-~~C~~ 571 (604)
.|+|.|++||+|..|+ +|..++ |.+ ++|+ ++|+|.|++||+|..|+.. .++|.. ..|.+
T Consensus 82 --~~~C~C~~G~~G~~C~----~C~~~~~C~~-g~C~---~~~~C~C~~G~~G~~C~~~---------~~~C~~~~~C~~ 142 (169)
T 2vj2_A 82 --PGDCRCQYGWQGLYCD----KCIPHPGCVH-GICN---EPWQCLCETNWGGQLCDKD---------LNYCGTHQPCLN 142 (169)
T ss_dssp --TTCCEECTTEESSSSC----EECCCTTCSS-EECS---STTCCEECTTEETTTTCEE---------SCHHHHTCCCCT
T ss_pred --CCeeECCCCCCCCCcc----cCCCCCCCCC-CCcC---CCCEEeCCCCCCCCcccCC---------CCCCCCCCCCCC
Confidence 4678888888888875 355444 764 4776 4678888888888888742 345542 56666
Q ss_pred Cc-eeCC-CCCCCeeeecCCCCcCCCCCC
Q psy15407 572 GI-CFQP-QGSNDYLCKCAPGYSGKESLL 598 (604)
Q Consensus 572 g~-C~~~-~g~~~~~C~C~~G~~G~~C~~ 598 (604)
++ |+++ . ++|+|+|++||+|++||+
T Consensus 143 ~g~C~~~~~--~~~~C~C~~G~~G~~Ce~ 169 (169)
T 2vj2_A 143 GGTCSNTGP--DKYQCSCPEGYSGPNCEI 169 (169)
T ss_dssp TCEEEECST--TCEEEECCTTCCSTTSCC
T ss_pred CCEEcCCCC--CCcEeECCCCCcCcCcCC
Confidence 54 8875 5 668888888888888874
No 72
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=2.3e-18 Score=168.27 Aligned_cols=154 Identities=23% Similarity=0.322 Sum_probs=135.4
Q ss_pred cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccc
Q psy15407 116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY 195 (604)
Q Consensus 116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~ 195 (604)
..++++++++.|+.||.. +. ++|++|+|++|+|+.+.+.+|.++++|+.|+|++|.+..+..
T Consensus 15 ~~~~l~~~~~~l~~~p~~--~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------- 76 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG--IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-------------- 76 (251)
T ss_dssp GGTEEECTTCCCSSCCSC--CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT--------------
T ss_pred CCeEEecCCCCccccCCC--CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH--------------
Confidence 457899999999999864 43 689999999999999999999999999999999876432110
Q ss_pred cccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCc
Q psy15407 196 IAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND 275 (604)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~ 275 (604)
..... ..+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+
T Consensus 77 -------------~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 77 -------------GVFDD-LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp -------------TTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------hHhcc-CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence 00011 1389999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccCcccceeeeccCCCcc
Q psy15407 276 ISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 276 l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
|+.+++..|..+++|++|+|++|.+.
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999999999999999999999886
No 73
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=99.77 E-value=9.4e-20 Score=165.65 Aligned_cols=151 Identities=28% Similarity=0.717 Sum_probs=117.3
Q ss_pred CceeeeCCCCCcCCCCcccCCCCCCC-CCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCC-CCcEEEeCCC
Q psy15407 378 RQYQCRCTPGYHGQHCEFMIDACYGN-PCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCE-NNATCVDLIQ 455 (604)
Q Consensus 378 ~~~~C~C~~g~~G~~c~~~~~~C~~~-~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~-~~~~C~~~~~ 455 (604)
..+.|.|++||+|..|+. .|... .|.++++|.. ...|.|++||+|..|+. +.|.. .|. .++.|++
T Consensus 15 ~~~~c~C~~g~~G~~C~~---~C~~~~~c~~~g~C~~----~g~C~C~~G~~G~~C~~--~~C~~-~C~~~~g~C~~--- 81 (169)
T 2vj2_A 15 GRSAVTCDDYYYGFGCNK---FCRPRDDFFGHYACDQ----NGNKTCMEGWMGPECNR--AICRQ-GCSPKHGSCKL--- 81 (169)
T ss_dssp ------CCTTEETTTTCE---ECCCEEETTEEEEECS----SCCEEECTTEESTTSCE--ECCCT-TCCTTTEECSS---
T ss_pred cCeeeeCCCcCcCCCccc---ccCCCCCcCCCCEeCC----CCeeECCCCCcCCCCCC--CCCCC-CCCCCCcccCC---
Confidence 467999999999999984 35543 4777888853 34799999999999984 45653 575 6678865
Q ss_pred CeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCC-CCCCCCCEEeeC-CC
Q psy15407 456 AYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN-HMCQNGGTCVDG-IN 533 (604)
Q Consensus 456 ~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~-~~C~~~~~C~~~-~~ 533 (604)
.|.|.|++||+|..|+. |... ..|.++ +|+ ++|+|.|++||+|..|+.++++|.. .+|.++|+|++. .+
T Consensus 82 ~~~C~C~~G~~G~~C~~----C~~~-~~C~~g-~C~---~~~~C~C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~ 152 (169)
T 2vj2_A 82 PGDCRCQYGWQGLYCDK----CIPH-PGCVHG-ICN---EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD 152 (169)
T ss_dssp TTCCEECTTEESSSSCE----ECCC-TTCSSE-ECS---STTCCEECTTEETTTTCEESCHHHHTCCCCTTCEEEECSTT
T ss_pred CCeeECCCCCCCCCccc----CCCC-CCCCCC-CcC---CCCEEeCCCCCCCCcccCCCCCCCCCCCCCCCCEEcCCCCC
Confidence 58899999999999963 4432 237754 887 5789999999999999988999975 799999999996 88
Q ss_pred CeEeeeCCCCccCCCCc
Q psy15407 534 DYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 534 ~y~C~C~~G~~G~~C~~ 550 (604)
+|+|.|++||+|..|++
T Consensus 153 ~~~C~C~~G~~G~~Ce~ 169 (169)
T 2vj2_A 153 KYQCSCPEGYSGPNCEI 169 (169)
T ss_dssp CEEEECCTTCCSTTSCC
T ss_pred CcEeECCCCCcCcCcCC
Confidence 99999999999999973
No 74
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=99.77 E-value=2.1e-22 Score=191.24 Aligned_cols=186 Identities=14% Similarity=0.074 Sum_probs=140.5
Q ss_pred CCceeeeCCCC---CcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCc------CCCCCCCCC
Q psy15407 377 ERQYQCRCTPG---YHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDD------CLSHKCENN 447 (604)
Q Consensus 377 ~~~~~C~C~~g---~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~------C~~~~C~~~ 447 (604)
.|.+++.+.+| +.|.+++..+.++.. +|.++|+|++. .++|.|.|+.||+|..|+.++++ |...||.++
T Consensus 10 ~Gg~s~~~~pgg~~~~g~~~~~n~~~~~~-~c~ngG~C~~g-~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~ng 87 (267)
T 4fbr_A 10 WGGSQATWNPGGLWLIGARDKQNVVALDI-KSDDGGKTLKG-TMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPG 87 (267)
T ss_dssp CSSTTSCCEEEEEEECCCCSSCCEEEEEE-ECSSTTSEEEE-EEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEE
T ss_pred CCcccCCcCCCCceeeccccccccccCCC-CcCCCCeecCC-CCCeEEeCCCCcccccccccccccccccCcCCCcccCC
Confidence 35677788777 678888877766654 78899999884 68999999999999999999999 666777776
Q ss_pred cEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCE
Q psy15407 448 ATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGT 527 (604)
Q Consensus 448 ~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~ 527 (604)
++| |.|..|+.. ++|.. .+|.++++|++...+|+|.|++||+|..|+.++++|...++...+.
T Consensus 88 gtc--------------~~G~~c~~~-~eC~s--~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~p 150 (267)
T 4fbr_A 88 GVW--------------VLGARDKQN-IVAVS--IKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAP 150 (267)
T ss_dssp EEE--------------ECCCCSSCC-EEEEE--EECSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEECSSTTSC
T ss_pred Cee--------------eccCccccc-cccCC--CCCCCCCEEecCCccEEeeCCCCccccCCCCCcccccccCCcCCcc
Confidence 665 356777644 57775 5899999999999999999999999999999888855443333333
Q ss_pred EeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCc-eeCCCCCCCeeeecCCCCcCCCCCCCcc
Q psy15407 528 CVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSGKESLLQQT 601 (604)
Q Consensus 528 C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C~~~~~ 601 (604)
|.+. ..+|.|.+|+.. ..|...+|.+++ |++.. ++|+|.|++||+|..|+...+
T Consensus 151 C~ng--------g~c~~G~~c~~~----------i~c~~~~c~ngg~C~dg~--~~y~C~Cp~Gf~G~~c~~~i~ 205 (267)
T 4fbr_A 151 WHSG--------GVWVLGTRGKQN----------VINVDAKSNDGGKTLSGT--MTYNGEGPIGFRGTLTSPDTY 205 (267)
T ss_dssp CEEE--------EEEECCSSTTSC----------EEEEEEECSSTTSEEEEE--EEETTSCCEEEEEEEEETTEE
T ss_pred ccCC--------cceecccccccc----------cccCCCCCCCCCEeeCCC--CCeEEeCCCCccccccccccc
Confidence 3321 111346667653 223445566666 99988 889999999999999986554
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.7e-18 Score=185.71 Aligned_cols=202 Identities=18% Similarity=0.167 Sum_probs=145.8
Q ss_pred CCeEEcCCCCCCcCCC-CC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 96 GTRVDCSQRGLKEIPK-DI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~-~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
-+.|++++|.|+.+|. .+ ...+++|+|++|.|+.+++ |..+++|++|+|++|.|+.+++. ++|+.|+++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~ 107 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAA 107 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEECC
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC-----CCcCEEECc
Confidence 3789999999998864 34 4567999999999988765 88999999999999999887643 567777777
Q ss_pred CCCCCc-----cccccEEEccCCccccc---------------cccccceeeeeeccccCCccccceeecCCCCceeecc
Q psy15407 173 YCPPKC-----TCTVRVLFYDGRAGECY---------------IAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS 232 (604)
Q Consensus 173 ~~~~~~-----~~~l~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~ 232 (604)
+|.+.. +..+..+.+..+..... +..+.+... ....+...+ .+|++|+|++|.|+.++
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l-~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASS-DTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGT-TTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhC-CcccEEecCCCcccccc
Confidence 765432 23445555554432211 111111111 011111122 37889999999998886
Q ss_pred CCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCcccc
Q psy15407 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSE 311 (604)
Q Consensus 233 ~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~ 311 (604)
+. ..+++|+.|+|++|+|+.+++. |..+++|+.|+|++|.|+.+|.. |..+++|+.|+|++|+|.|++...|+..
T Consensus 186 ~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 186 GQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp CC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--ccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 53 3588999999999999998765 88889999999999999998875 7788999999999999998876555544
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=2.4e-19 Score=181.12 Aligned_cols=200 Identities=17% Similarity=0.112 Sum_probs=139.8
Q ss_pred CCeEEcCCCCCC-cCCCCC----CccCcEEecCCCcceeecCC---CccCCCCCCcEEeCCCCcceecCCCcCCCcccCC
Q psy15407 96 GTRVDCSQRGLK-EIPKDI----PLYTTELILNDNEIGKIKSD---GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQG 167 (604)
Q Consensus 96 ~~~l~cs~~~L~-~iP~~l----~~~~~~L~L~~N~i~~i~~~---~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 167 (604)
-+.|++++|.|+ .+|..+ ...+++|+|++|.|+...+. ..|..+++|++|+|++|+|+.+.+..|..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 478999999988 455554 45679999999999763220 1145789999999999999999999999999999
Q ss_pred cCCCCCCCCCccccc---cEEEccCCccccccccccceeeeeecc-ccCCccccceeecCCCCceeeccCCCCCCC---C
Q psy15407 168 CLGDNYCPPKCTCTV---RVLFYDGRAGECYIAVELFSSRIRVSY-YVGNYPVSTMYRDLSNNQIGFLSNFTFSPL---S 240 (604)
Q Consensus 168 ~L~l~~~~~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l---~ 240 (604)
.|+|++|.+.....+ ..+.-...+..+.+..+.+........ +... ..+|++|+|++|+|+.+.+..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-GVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-TCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-CCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 999999875321110 000001122333333333221111000 1111 1388999999999999865555555 6
Q ss_pred CCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 241 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+|++|+|++|+|+.++...+ ++|++|+|++|+|+.+|. +..+++|+.|+|++|+|.
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCC
Confidence 99999999999998865443 789999999999998865 688899999999999985
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=6.5e-18 Score=186.30 Aligned_cols=202 Identities=17% Similarity=0.177 Sum_probs=151.9
Q ss_pred CCeEEcCCCCCCcCCC-CC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 96 GTRVDCSQRGLKEIPK-DI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~-~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
-+.|+++++.|+.+|. .+ ...+++|+|++|.|+.+++. +|.++++|++|+|++|.|+.+++..|.++++|+.|+|+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 3789999999998875 34 45679999999999998774 48999999999999999999999999999999999999
Q ss_pred CCCC--------CccccccEEEccCCccccc------------cccccceee-------------eeeccccCCccccce
Q psy15407 173 YCPP--------KCTCTVRVLFYDGRAGECY------------IAVELFSSR-------------IRVSYYVGNYPVSTM 219 (604)
Q Consensus 173 ~~~~--------~~~~~l~~l~~~~~~~~~~------------~~~~~~~~~-------------~~~~~~~~~~~~~L~ 219 (604)
+|.+ ..+..|..+.+..+..... +..+.+... ..+..+.+..+.+|+
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~ 235 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence 8853 2345677777766543211 111111110 011112222334577
Q ss_pred eecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNP 299 (604)
Q Consensus 220 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np 299 (604)
.|+|++|.|+.+ ..|..+++|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.++.. +..+++|+.|+|++|+
T Consensus 236 ~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 236 ILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNH 312 (597)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-SSCCTTCCEEECCSSC
T ss_pred EEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-cccCCCCcEEECCCCC
Confidence 777777777764 3577889999999999999999999999999999999999999998764 5678899999999998
Q ss_pred cc
Q psy15407 300 LY 301 (604)
Q Consensus 300 l~ 301 (604)
+.
T Consensus 313 l~ 314 (597)
T 3oja_B 313 LL 314 (597)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=2.6e-18 Score=188.43 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=54.2
Q ss_pred CCCCCCeeC---CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407 87 ACPSGCSCD---GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE 163 (604)
Q Consensus 87 ~CP~~C~C~---~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l 163 (604)
.||..|.|. .+.|+|++++|++||..++..+++|+|++|.|+.|+. .+++|++|+|++|+|+.|+. .+
T Consensus 30 ~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~----~l 100 (622)
T 3g06_A 30 VVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV----LP 100 (622)
T ss_dssp HHHHHHHHHHHCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC----CC
T ss_pred cCcccccccCCCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC----CC
Confidence 356667773 4678888888888888888888888888888887764 35667777777777766654 33
Q ss_pred ccCCcCCCCCC
Q psy15407 164 NDQGCLGDNYC 174 (604)
Q Consensus 164 ~~L~~L~l~~~ 174 (604)
++|+.|++++|
T Consensus 101 ~~L~~L~Ls~N 111 (622)
T 3g06_A 101 PGLLELSIFSN 111 (622)
T ss_dssp TTCCEEEECSC
T ss_pred CCCCEEECcCC
Confidence 44444444444
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=3.3e-18 Score=170.92 Aligned_cols=164 Identities=25% Similarity=0.231 Sum_probs=140.0
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~ 174 (604)
+.|+++++.++.+|. + ...+++|+|++|+|+.+++ |..+++|++|+|++|+|+.++. |..+++|+.|++++|
T Consensus 49 ~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 49 DQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN 122 (291)
T ss_dssp CEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS
T ss_pred cEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC
Confidence 789999999999875 4 4678999999999999875 8899999999999999998764 888999999998887
Q ss_pred CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407 175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC 254 (604)
Q Consensus 175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~ 254 (604)
.+..+.. ... ..+|+.|+|++|+|+.+ ..|..+++|++|+|++|+|+.
T Consensus 123 ~i~~~~~-----------------------------l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 123 GISDING-----------------------------LVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CCCCCGG-----------------------------GGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred cCCCChh-----------------------------hcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 6542210 011 13899999999999998 468899999999999999999
Q ss_pred eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
+++ |..+++|+.|+|++|+|+.++. +..+++|+.|+|++|++..
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred chh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccC
Confidence 976 8999999999999999999874 8899999999999999864
No 80
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=1.9e-18 Score=175.80 Aligned_cols=197 Identities=15% Similarity=0.018 Sum_probs=150.4
Q ss_pred CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcC---------CCcc
Q psy15407 96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF---------EGEN 164 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f---------~~l~ 164 (604)
-+.|++++|.|+.||..+ ...+++|+|++|.|+.|+.. |.++++|++|+|++|++....+..+ .+++
T Consensus 106 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~--l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~ 183 (328)
T 4fcg_A 106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183 (328)
T ss_dssp CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG--GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH--HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence 378999999999999877 45789999999999999764 8999999999999976655444443 4599
Q ss_pred cCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCe
Q psy15407 165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQ 244 (604)
Q Consensus 165 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~ 244 (604)
+|+.|++++|.+..++.. +.-...+..+.+..+.+.... .....+ .+|++|+|++|.+....+..|..+++|++
T Consensus 184 ~L~~L~L~~n~l~~lp~~--l~~l~~L~~L~L~~N~l~~l~---~~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 184 NLQSLRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLSALG---PAIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp TCCEEEEEEECCCCCCGG--GGGCTTCCEEEEESSCCCCCC---GGGGGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCEEECcCCCcCcchHh--hcCCCCCCEEEccCCCCCcCc---hhhccC-CCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 999999998876533211 111122233333333322211 111222 38999999999998888889999999999
Q ss_pred EEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407 245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300 (604)
Q Consensus 245 L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl 300 (604)
|+|++|++....+..|..+++|++|+|++|++....+..|..+++|+.+++..|.+
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999998888888899999999999999887765566799999999999987755
No 81
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=7.2e-18 Score=161.13 Aligned_cols=128 Identities=28% Similarity=0.378 Sum_probs=119.6
Q ss_pred cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccc
Q psy15407 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIA 197 (604)
Q Consensus 118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 197 (604)
+.+++++|.|+.||.. +. ++|+.|+|++|+|+.+++.+|.+++
T Consensus 14 ~~v~c~~~~l~~iP~~--l~--~~l~~L~l~~n~i~~i~~~~~~~l~--------------------------------- 56 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN--LP--ETITEIRLEQNTIKVIPPGAFSPYK--------------------------------- 56 (220)
T ss_dssp TEEECTTSCCSSCCSS--CC--TTCCEEECCSSCCCEECTTSSTTCT---------------------------------
T ss_pred CEEEcCCCCcCcCCCc--cC--cCCCEEECCCCcCCCcCHhHhhCCC---------------------------------
Confidence 6799999999999864 33 7899999999999999999998775
Q ss_pred cccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccc
Q psy15407 198 VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277 (604)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~ 277 (604)
+|++|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+
T Consensus 57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 7888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCcccceeeeccCCCcc
Q psy15407 278 MIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 278 ~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
.+++..|..+++|+.|+|++|.+.
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EeCHHHcCCCCCCCEEECCCCcCC
Confidence 999999999999999999999875
No 82
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.6e-18 Score=170.42 Aligned_cols=163 Identities=19% Similarity=0.239 Sum_probs=139.4
Q ss_pred eEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407 98 RVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP 175 (604)
Q Consensus 98 ~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~ 175 (604)
.++++++.++.++. + ...++.|+|++|.|+.++ . |..+++|++|+|++|+|+.+++ |..+++|+.|++++|.
T Consensus 23 ~l~l~~~~i~~~~~-~~~l~~L~~L~l~~n~i~~l~-~--l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 23 KQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLA-G--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHTCSCTTSEEC-HHHHTTCSEEECTTSCCCCCT-T--GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHhcCCCcccccc-hhhcCcCcEEECcCCCcccch-H--HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 46788888988873 3 467799999999999986 2 8999999999999999999987 8999999999999876
Q ss_pred CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee
Q psy15407 176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255 (604)
Q Consensus 176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i 255 (604)
+..+.. +.. .+|++|+|++|+|+.++ .|..+++|++|+|++|+|+.+
T Consensus 97 l~~l~~----------------------------~~~---~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 97 LKNLNG----------------------------IPS---ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CSCCTT----------------------------CCC---SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC
T ss_pred cCCcCc----------------------------ccc---CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC
Confidence 542211 111 38999999999999986 488999999999999999998
Q ss_pred eccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccc
Q psy15407 256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD 303 (604)
Q Consensus 256 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~Cd 303 (604)
+ .|..+++|+.|+|++|+|+.+ ..|..+++|+.|+|++|++...
T Consensus 144 ~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 4 688999999999999999999 4689999999999999999876
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=7.5e-18 Score=182.79 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=74.6
Q ss_pred CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP 175 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~ 175 (604)
++.|+|++++|+.||..++..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++++|++|+|++|.
T Consensus 2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred cceEecCCCCcccccccccccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 46788999999999988888888899999998888653 38888888888888888888888888888888888888875
Q ss_pred CCcc-----ccccEEEccCC
Q psy15407 176 PKCT-----CTVRVLFYDGR 190 (604)
Q Consensus 176 ~~~~-----~~l~~l~~~~~ 190 (604)
+..+ ..++.+.+..+
T Consensus 81 l~~lp~~~l~~L~~L~L~~N 100 (520)
T 2z7x_B 81 LVKISCHPTVNLKHLDLSFN 100 (520)
T ss_dssp CCEEECCCCCCCSEEECCSS
T ss_pred eeecCccccCCccEEeccCC
Confidence 5433 34555655544
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=6.4e-18 Score=160.09 Aligned_cols=146 Identities=26% Similarity=0.334 Sum_probs=129.5
Q ss_pred CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
-+.|++++++|+.+|..+ ...+++|+|++|+|+.+++. +|..+++|++|+|++|+|+.+++..|..++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------- 100 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPNGVFDKLT-------- 100 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCHhHhcCcc--------
Confidence 478999999999998764 46789999999999999764 589999999999999999999988887764
Q ss_pred CCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcc
Q psy15407 173 YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKL 252 (604)
Q Consensus 173 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l 252 (604)
+|++|+|++|+|+.+++..|..+++|++|+|++|+|
T Consensus 101 --------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 101 --------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 788889999999999998899999999999999999
Q ss_pred eeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 253 QCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 253 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+.+++..|..+++|+.|+|++|.+.. .+++|+.|+++.|.+.
T Consensus 137 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 137 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred ceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 99998889999999999999997753 4557888888888776
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=5.3e-19 Score=179.12 Aligned_cols=187 Identities=20% Similarity=0.211 Sum_probs=125.3
Q ss_pred CeEEcCCCCCCcCCC-CC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 97 TRVDCSQRGLKEIPK-DI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~-~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
+.|++++|+|+.++. .+ ...+++|+|++|.|+.+++ |..+++|++|+|++|+|+.+++. ++|+.|++++
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~~-----~~L~~L~l~~ 108 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAAN 108 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEEC-----TTCCEEECCS
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccCC-----CCcCEEECCC
Confidence 677888888777663 22 3456778888888877654 77778888888888887776532 6777777777
Q ss_pred CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCC-CCCCCCCeEEecCCcc
Q psy15407 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF-SPLSKLSQLILSYNKL 252 (604)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f-~~l~~L~~L~Ls~N~l 252 (604)
|.+....... ......+.+..+.+...... .... ..+|++|+|++|+|+.+++..| ..+++|++|+|++|+|
T Consensus 109 n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~--~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 109 NNISRVSCSR----GQGKKNIYLANNKITMLRDL--DEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp SCCSEEEECC----CSSCEEEECCSSCCCSGGGB--CTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CccCCcCccc----cCCCCEEECCCCCCCCccch--hhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 6543322100 01122222222222211100 0111 2378888999999888876665 4688899999999999
Q ss_pred eeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 253 QCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 253 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+.++... .+++|++|+|++|+|+.+++. |..+++|+.|+|++|.+.
T Consensus 182 ~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 182 YDVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CEEECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC
T ss_pred ccccccc--ccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc
Confidence 8885443 478899999999999988876 778888999999998886
No 86
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=7.1e-18 Score=187.18 Aligned_cols=82 Identities=22% Similarity=0.125 Sum_probs=44.9
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEe------cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLIL------SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAI 290 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L------s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 290 (604)
+|++|+|++|+|+.++. .+..+++|++|+| ++|++....|..|..+++|++|+|++|+|+.||...+ ++|
T Consensus 514 ~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L 589 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNI 589 (636)
T ss_dssp TCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---TTC
T ss_pred CcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh---CcC
Confidence 55555666666555432 3445556666655 3344444445555555666666666666655555432 455
Q ss_pred eeeeccCCCccc
Q psy15407 291 THLAIGGNPLYC 302 (604)
Q Consensus 291 ~~L~L~~Npl~C 302 (604)
+.|+|++|+|.+
T Consensus 590 ~~L~Ls~N~l~~ 601 (636)
T 4eco_A 590 SVLDIKDNPNIS 601 (636)
T ss_dssp CEEECCSCTTCE
T ss_pred CEEECcCCCCcc
Confidence 566666666554
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.4e-17 Score=164.72 Aligned_cols=170 Identities=21% Similarity=0.255 Sum_probs=141.5
Q ss_pred EEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCC
Q psy15407 99 VDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177 (604)
Q Consensus 99 l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~ 177 (604)
+++..+.+..+.. .-...++.|++++|.|+.++. |..+++|++|+|++|+|+.++ .|..+++|++|++++|.+.
T Consensus 24 l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~---l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT---GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCC
T ss_pred HHhcCcccccccccccccceeeeeeCCCCcccccc---cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccC
Confidence 3455555554422 124567999999999998853 889999999999999999874 7889999999999887543
Q ss_pred ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec
Q psy15407 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR 257 (604)
Q Consensus 178 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~ 257 (604)
.+.. ..... ..+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++
T Consensus 99 ~~~~---------------------------~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 99 SLPN---------------------------GVFDK-LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp CCCT---------------------------TTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCh---------------------------hHhcC-CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 1110 00011 2389999999999999999999999999999999999999999
Q ss_pred cccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 258 DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 258 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99999999999999999999999999999999999999999886
No 88
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=7.3e-18 Score=167.97 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=75.6
Q ss_pred ccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeec
Q psy15407 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295 (604)
Q Consensus 216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 295 (604)
.+|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|++....+. ...+..|+.+.+
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~ 255 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRG 255 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCS
T ss_pred cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhccc
Confidence 4899999999999999999999999999999999999999988999999999999999999854331 122345677778
Q ss_pred cCCCcccccC
Q psy15407 296 GGNPLYCDCG 305 (604)
Q Consensus 296 ~~Npl~CdC~ 305 (604)
..|.+.|.=.
T Consensus 256 ~~~~~~c~~p 265 (285)
T 1ozn_A 256 SSSEVPCSLP 265 (285)
T ss_dssp EECCCBEEES
T ss_pred ccCccccCCc
Confidence 8899988744
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=5.6e-18 Score=159.00 Aligned_cols=145 Identities=18% Similarity=0.208 Sum_probs=110.1
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~ 174 (604)
+.|+++++.|+.+| .+ ...+++|+|++|.++.++. |..+++|++|+|++|+|+...+..|..++
T Consensus 47 ~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---------- 112 (197)
T 4ezg_A 47 TYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKDVTSDKIPNLSGLT---------- 112 (197)
T ss_dssp CEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGG---GTTCTTCCEEEEECTTCBGGGSCCCTTCT----------
T ss_pred cEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchh---hhcCCCCCEEEeECCccCcccChhhcCCC----------
Confidence 56666667666666 33 3455667777776665542 66667777777777766665555555443
Q ss_pred CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCc-ce
Q psy15407 175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK-LQ 253 (604)
Q Consensus 175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~-l~ 253 (604)
+|++|+|++|+|+...+..|..+++|++|+|++|+ ++
T Consensus 113 ------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~ 150 (197)
T 4ezg_A 113 ------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150 (197)
T ss_dssp ------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC
T ss_pred ------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc
Confidence 78889999999998666788999999999999998 88
Q ss_pred eeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 254 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
.++ .|..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|++.
T Consensus 151 ~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 151 DIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 885 6889999999999999999987 5888999999999999863
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=2.1e-19 Score=181.70 Aligned_cols=192 Identities=14% Similarity=0.016 Sum_probs=108.0
Q ss_pred CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccC-------CCCCCcEEeCCCCcceecCCCcC--CCcccCC
Q psy15407 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFG-------RLPNLIKLDLRRNQVTGIEDNAF--EGENDQG 167 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~-------~l~~L~~L~Ls~N~i~~i~~~~f--~~l~~L~ 167 (604)
+.|+++++.+ .+|..++..++.|+|++|.|+.+.....+. ++++|++|+|++|+|+...+..+ ..+++|+
T Consensus 46 ~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 124 (312)
T 1wwl_A 46 EYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124 (312)
T ss_dssp TTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCS
T ss_pred eeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCcc
Confidence 5677778888 778878777888899998886643222233 68888888888888886544443 7888888
Q ss_pred cCCCCCCCCCcc------------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeec----
Q psy15407 168 CLGDNYCPPKCT------------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL---- 231 (604)
Q Consensus 168 ~L~l~~~~~~~~------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l---- 231 (604)
.|+|++|.+... ..++.+.+..+......... ...+ .+|++|+|++|++...
T Consensus 125 ~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-----------~~~l-~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-----------VRVF-PALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp EEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-----------CCCC-SSCCEEECCSCTTCHHHHHH
T ss_pred EEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-----------hccC-CCCCEEECCCCCcCcchHHH
Confidence 888888876543 44555555544322111000 0111 1455555555554321
Q ss_pred cCCCCCCCCCCCeEEecCCccee---eeccccCCCCcccEEEccCCccccCCc-ccccCcccceeeeccCCCcc
Q psy15407 232 SNFTFSPLSKLSQLILSYNKLQC---IDRDALAGLKSLRIISLHGNDISMIPE-GAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 232 ~~~~f~~l~~L~~L~Ls~N~l~~---i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~Npl~ 301 (604)
....|..+++|++|+|++|+|+. ++...|..+++|++|+|++|+|+.+++ ..+..+++|+.|+|++|.+.
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 11223445555555555555552 222333444555555555555554332 33444455555555555544
No 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.3e-17 Score=170.10 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=131.5
Q ss_pred CcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCC-CcccCCcCCCCCCCCCccccccEEEccCCccccc
Q psy15407 117 TTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE-GENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY 195 (604)
Q Consensus 117 ~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~ 195 (604)
.+.+++++|.|+.||.. +. +.|+.|+|++|+|+.+.+..|. ++.+|+.|+|++|.+..+..
T Consensus 20 ~~~l~c~~~~l~~iP~~--~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-------------- 81 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS--LP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-------------- 81 (361)
T ss_dssp TTEEECCSSCCSSCCSS--CC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT--------------
T ss_pred CCEEEeCCCCcCccCcc--CC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh--------------
Confidence 36899999999999863 32 5689999999999999999998 99999999999876432110
Q ss_pred cccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCc
Q psy15407 196 IAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND 275 (604)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~ 275 (604)
.....+ .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+.+.+|..+++|+.|+|++|+
T Consensus 82 -------------~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 82 -------------EAFVPV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp -------------TTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -------------hhccCC-CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 001111 389999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccc---cCcccceeeeccCCCcc
Q psy15407 276 ISMIPEGAF---ADLHAITHLAIGGNPLY 301 (604)
Q Consensus 276 l~~i~~~~f---~~l~~L~~L~L~~Npl~ 301 (604)
|+.++...| ..+++|+.|+|++|.+.
T Consensus 148 l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999999888 56999999999999986
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=157.99 Aligned_cols=130 Identities=20% Similarity=0.263 Sum_probs=118.6
Q ss_pred CeEEcCCCCCCcCC-CCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 97 TRVDCSQRGLKEIP-KDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 97 ~~l~cs~~~L~~iP-~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
+.|++++|+|+.++ ..+ ...+++|+|++|+|+.+++. .|.++++|++|+|++|+|+.+++.+|.+++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------- 105 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-AFEGASGVNEILLTSNRLENVQHKMFKGLE-------- 105 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCGGGGTTCS--------
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH-HhCCCCCCCEEECCCCccCccCHhHhcCCc--------
Confidence 68999999999884 333 45789999999999999874 499999999999999999999999998775
Q ss_pred CCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcc
Q psy15407 173 YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKL 252 (604)
Q Consensus 173 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l 252 (604)
+|++|+|++|+|+.+++..|..+++|++|+|++|+|
T Consensus 106 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 106 --------------------------------------------SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp --------------------------------------------SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred --------------------------------------------CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 788899999999999999999999999999999999
Q ss_pred eeeeccccCCCCcccEEEccCCccccC
Q psy15407 253 QCIDRDALAGLKSLRIISLHGNDISMI 279 (604)
Q Consensus 253 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i 279 (604)
+.+.+.+|..+++|+.|+|++|.|+..
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 142 TTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999999999999999999999999843
No 93
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=99.72 E-value=3e-17 Score=175.88 Aligned_cols=114 Identities=27% Similarity=0.686 Sum_probs=62.1
Q ss_pred CCcCCCCCCCCCcEEEeCCCC-eEE-ecCCCCCC--CCcccCCCcCCCCCCCCCCCC---ceeecCCCeEEe-cCCCCcC
Q psy15407 436 IDDCLSHKCENNATCVDLIQA-YEC-RCAPGFQG--EFCQTKTPFCAGEYNPCRNGA---RCLDHFSHYTCE-CTPGFSG 507 (604)
Q Consensus 436 ~~~C~~~~C~~~~~C~~~~~~-~~C-~C~~g~~g--~~C~~~~~~C~~~~~~C~~~~---~C~~~~~~~~C~-C~~g~~g 507 (604)
+++|..+||.++++|+++.++ |+| .|++||+| ..|+ ++++|...++.|.+++ +|+++.++|+|. |++||+|
T Consensus 3 IDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G 81 (634)
T 1yo8_A 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRG 81 (634)
T ss_dssp -CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEE
T ss_pred ccccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCCCccc
Confidence 344444444444444444422 444 44444444 3443 3444443333344444 444444445554 5555544
Q ss_pred CcCc--------------ccCCCCCC--CCCCCCCEEeeCC----CCeEeeeCCCCcc--CCCCc
Q psy15407 508 VNCT--------------VNVDDCVN--HMCQNGGTCVDGI----NDYTCKCEGDFVG--KFCEI 550 (604)
Q Consensus 508 ~~c~--------------~~~~~C~~--~~C~~~~~C~~~~----~~y~C~C~~G~~G--~~C~~ 550 (604)
..|+ .++++|.. ++|.++++|++.. ++|+|.|++||+| ..|+.
T Consensus 82 ~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~ 146 (634)
T 1yo8_A 82 NQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGE 146 (634)
T ss_dssp CCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSSEEE
T ss_pred CccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCccccc
Confidence 4432 35677764 4788888888877 7888888888876 56763
No 94
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=9.3e-18 Score=186.24 Aligned_cols=203 Identities=19% Similarity=0.153 Sum_probs=121.5
Q ss_pred CCeEEcCCCC-CC--cCCCCCC--------ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcce-ecCCCcCCCc
Q psy15407 96 GTRVDCSQRG-LK--EIPKDIP--------LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT-GIEDNAFEGE 163 (604)
Q Consensus 96 ~~~l~cs~~~-L~--~iP~~l~--------~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~l 163 (604)
-+.|++++|+ |+ .+|..+. ..+++|+|++|+|+.||..+.|.++++|++|+|++|+|+ .|+ .|..+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCC
Confidence 3678888887 77 3776552 567888888888887765113778888888888888887 555 77777
Q ss_pred ccCCcCCCCCCCCCc-------ccc-ccEEEccCCccccccccccce----ee----eeeccccC----C---------c
Q psy15407 164 NDQGCLGDNYCPPKC-------TCT-VRVLFYDGRAGECYIAVELFS----SR----IRVSYYVG----N---------Y 214 (604)
Q Consensus 164 ~~L~~L~l~~~~~~~-------~~~-l~~l~~~~~~~~~~~~~~~~~----~~----~~~~~~~~----~---------~ 214 (604)
++|+.|++++|.+.. ... ++.+.+..+... .++..+.. .+ .....+.+ . .
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 778888777764322 223 555555544322 11111000 00 00000000 0 1
Q ss_pred cccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCC-------cccEEEccCCccccCCcccc-cC
Q psy15407 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK-------SLRIISLHGNDISMIPEGAF-AD 286 (604)
Q Consensus 215 ~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-------~L~~L~Ls~N~l~~i~~~~f-~~ 286 (604)
..+|++|+|++|+|+.++...|..+++|++|+|++|+|+.++...|..+. +|+.|+|++|+|+.||...+ ..
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 12566677777777666666666666777777777777766665555443 66777777777776665443 36
Q ss_pred cccceeeeccCCCcc
Q psy15407 287 LHAITHLAIGGNPLY 301 (604)
Q Consensus 287 l~~L~~L~L~~Npl~ 301 (604)
+++|+.|+|++|++.
T Consensus 512 l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 512 LPYLVGIDLSYNSFS 526 (636)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CCCcCEEECCCCCCC
Confidence 666777777777665
No 95
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=9.4e-18 Score=190.15 Aligned_cols=203 Identities=18% Similarity=0.158 Sum_probs=122.8
Q ss_pred CCeEEcCCCC-CCc--CCCCCC---------ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407 96 GTRVDCSQRG-LKE--IPKDIP---------LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE 163 (604)
Q Consensus 96 ~~~l~cs~~~-L~~--iP~~l~---------~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l 163 (604)
-+.|++++|. |+. +|..+. ..++.|+|++|.|+.||..+.|.++++|++|+|++|+|+.|+ .|..+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L 594 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN 594 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC
Confidence 3667777776 663 665431 256777777777776654112677777777777777777665 67777
Q ss_pred ccCCcCCCCCCCCCcc-------cc-ccEEEccCCcccccccccc-------cee----eeeeccccC--------Cccc
Q psy15407 164 NDQGCLGDNYCPPKCT-------CT-VRVLFYDGRAGECYIAVEL-------FSS----RIRVSYYVG--------NYPV 216 (604)
Q Consensus 164 ~~L~~L~l~~~~~~~~-------~~-l~~l~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~--------~~~~ 216 (604)
++|+.|+|++|.+..+ .. |+.+.+..+... .++..+ +.. ...+..... ....
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 7777777777654322 23 555555544322 111100 000 000000000 0112
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCC-------cccEEEccCCccccCCcccc-cCcc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK-------SLRIISLHGNDISMIPEGAF-ADLH 288 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-------~L~~L~Ls~N~l~~i~~~~f-~~l~ 288 (604)
+|+.|+|++|+|+.++...|..+++|+.|+|++|+|+.++...|..+. +|+.|+|++|+|+.||...+ ..++
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 677777777777777776666777777777777777777666665443 77777777777777776543 3677
Q ss_pred cceeeeccCCCcc
Q psy15407 289 AITHLAIGGNPLY 301 (604)
Q Consensus 289 ~L~~L~L~~Npl~ 301 (604)
+|+.|+|++|.+.
T Consensus 754 ~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 754 YLSNMDVSYNCFS 766 (876)
T ss_dssp TCCEEECCSSCCS
T ss_pred CcCEEEeCCCCCC
Confidence 7777777777765
No 96
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=8.1e-18 Score=169.45 Aligned_cols=205 Identities=16% Similarity=0.138 Sum_probs=116.3
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~ 174 (604)
+.|++++|.++.+|..+ ...+++|+|++|.|+.++....|..+++|++|+|++|.|+.+.+.+|.++++|+.|++++|
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 34444444444444332 2334445555555544433222444555555555555555554445555555555555444
Q ss_pred CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407 175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC 254 (604)
Q Consensus 175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~ 254 (604)
.+........+....++..+.+..+.+.... ....... .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 3211000000000011111222222111110 1111222 389999999999999999899999999999999999999
Q ss_pred eeccccCCCC-cccEEEccCCccccCCc--ccccCcccceeeeccCCCccccc
Q psy15407 255 IDRDALAGLK-SLRIISLHGNDISMIPE--GAFADLHAITHLAIGGNPLYCDC 304 (604)
Q Consensus 255 i~~~~f~~l~-~L~~L~Ls~N~l~~i~~--~~f~~l~~L~~L~L~~Npl~CdC 304 (604)
+.+..|..++ +|+.|+|++|+|+.... ....-+..++.+.+..+.+.|.-
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCC
Confidence 9999999984 99999999999986432 11233445566677788888864
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=2.1e-17 Score=180.99 Aligned_cols=164 Identities=25% Similarity=0.233 Sum_probs=135.3
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~ 174 (604)
+.|+++++.|+.+|. + ...++.|+|++|.|+.+++ |..|++|+.|+|++|+|+.++ .|..+++|+.|+|++|
T Consensus 46 ~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 46 DQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp CCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTS
T ss_pred CEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCC
Confidence 678888999988874 4 5678999999999988875 888999999999999998875 5888888888888887
Q ss_pred CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407 175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC 254 (604)
Q Consensus 175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~ 254 (604)
.+..+.. ... ..+|+.|+|++|+|+.+ ..|..+++|+.|+|++|+|+.
T Consensus 120 ~l~~l~~-----------------------------l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 120 GISDING-----------------------------LVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCCCCGG-----------------------------GGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CCCCCcc-----------------------------ccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 6542211 011 13899999999999988 468889999999999999999
Q ss_pred eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
+++ |..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|++.-
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEEC
T ss_pred chh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcC
Confidence 876 889999999999999999985 48889999999999998864
No 98
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=169.93 Aligned_cols=178 Identities=21% Similarity=0.151 Sum_probs=118.0
Q ss_pred CeEEcCCCCCCcCCCC-C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKD-I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~-l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
+.|++++|.|+.++.. + ...+++|+|++|+|+.+++. .|..+++|++|+|++|+|+.+++.+|..+++|+.|+|++
T Consensus 91 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG-AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT-TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh-HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 5666666666665532 2 24456666666666666542 366666666666666666666666666666666666665
Q ss_pred CC---------CCccccccEEEccCCcc-------------ccccccccceeeeeeccccCCccccceeecCCCCceeec
Q psy15407 174 CP---------PKCTCTVRVLFYDGRAG-------------ECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231 (604)
Q Consensus 174 ~~---------~~~~~~l~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l 231 (604)
+. +..+..|+.+.+..+.. .+.+..+.+.... ......+ .+|+.|+|++|+|+.+
T Consensus 170 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l-~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR--PGSFQGL-MHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC--TTTTTTC-TTCCEEECTTCCCCEE
T ss_pred CCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC--hhhhccC-ccCCEEECCCCceeEE
Confidence 31 22334455555543322 2222222221110 0111122 3899999999999999
Q ss_pred cCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCcccc
Q psy15407 232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISM 278 (604)
Q Consensus 232 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~ 278 (604)
++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|.+.-
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 99999999999999999999999999999999999999999999863
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=8.3e-18 Score=180.41 Aligned_cols=180 Identities=18% Similarity=0.200 Sum_probs=114.0
Q ss_pred ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCcc---ccccEEEccCCc
Q psy15407 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCT---CTVRVLFYDGRA 191 (604)
Q Consensus 115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~---~~l~~l~~~~~~ 191 (604)
..+++|+|++|.|+.+++. .|..+++|++|+|++|.|+.+.+ |..+++|+.|+|++|.+..+ ..+..+.+..+.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 3789999999999999764 49999999999999999998876 99999999999999865433 344555554433
Q ss_pred ccccccccc------ceeeeeeccc----cCCccccceeecCCCCceeeccCCCCC-CCCCCCeEEecCCcceeeecccc
Q psy15407 192 GECYIAVEL------FSSRIRVSYY----VGNYPVSTMYRDLSNNQIGFLSNFTFS-PLSKLSQLILSYNKLQCIDRDAL 260 (604)
Q Consensus 192 ~~~~~~~~~------~~~~~~~~~~----~~~~~~~L~~L~Ls~N~i~~l~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f 260 (604)
........+ ......+... .+. ..+|++|+|++|.|+.+++..|. .+++|+.|+|++|.|+.+++..
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~- 188 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV- 188 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-
Confidence 221111000 0000000000 011 12566666666666665554543 5666666666666666664322
Q ss_pred CCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 261 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
.+++|+.|+|++|.|+.+++. |..+++|+.|+|++|.+.
T Consensus 189 -~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 189 -VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp -CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC
T ss_pred -cCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc
Confidence 366666666666666666654 556666666666666655
No 100
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=171.44 Aligned_cols=231 Identities=18% Similarity=0.145 Sum_probs=155.7
Q ss_pred CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
-+.|++++|.|+.+|..+ ...+++|+|++|.|+.+.+. .|..+++|++|+|++|.|+.+.+.+|.++++|+.|+|+
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 378899999999888754 35678899999998888664 48888888888888888888888888888888888777
Q ss_pred CCCCCcc--------ccccEE------------------------EccCC---------------cccccccccccee--
Q psy15407 173 YCPPKCT--------CTVRVL------------------------FYDGR---------------AGECYIAVELFSS-- 203 (604)
Q Consensus 173 ~~~~~~~--------~~l~~l------------------------~~~~~---------------~~~~~~~~~~~~~-- 203 (604)
+|.+..+ ..++.+ .+..+ +..+.+..+.+..
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 7643221 122222 22211 1111111111100
Q ss_pred ----------------eeeeccc----cCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCC
Q psy15407 204 ----------------RIRVSYY----VGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGL 263 (604)
Q Consensus 204 ----------------~~~~~~~----~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 263 (604)
...+..+ .... .+|+.|+|++|+|+.+.+..|..+++|++|+|++|+|+.+++..|..+
T Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEECTTSCTTC-TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred HHHhcCccccCeeECCCCcCCccChhhcccc-ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 0111111 1122 489999999999999999999999999999999999999999999999
Q ss_pred CcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccc--cCCccccCCCC
Q psy15407 264 KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV--EPGIARCTEPA 329 (604)
Q Consensus 264 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~--~~~~~~C~~P~ 329 (604)
++|+.|+|++|.++..... ..-+..+..+.+.++.+.|.....+-...+..... ......|..|.
T Consensus 320 ~~L~~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~ 386 (477)
T 2id5_A 320 GNLETLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAR 386 (477)
T ss_dssp GGCCEEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEE
T ss_pred cccCEEEccCCCccCccch-HhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEecccc
Confidence 9999999999999854321 11122344567788999998875544443332111 12335666553
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=9.6e-18 Score=153.10 Aligned_cols=138 Identities=23% Similarity=0.221 Sum_probs=107.5
Q ss_pred cCCCCCCccCcEEecCCCcce--eecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEE
Q psy15407 108 EIPKDIPLYTTELILNDNEIG--KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVL 185 (604)
Q Consensus 108 ~iP~~l~~~~~~L~L~~N~i~--~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l 185 (604)
.++...+..+++|+|++|.|+ .|+.. |..+++|++|+|++|.|+.+ ..|..++
T Consensus 17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~--------------------- 71 (168)
T 2ell_A 17 ELRNRTPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVGLISV--SNLPKLP--------------------- 71 (168)
T ss_dssp HHTTSCTTSCSEEECCSCBCBTTBCSSC--CGGGGGCCEEEEESSCCCCC--SSCCCCS---------------------
T ss_pred hhccCCcccCCEEECCCCCCChhhHHHH--HHhCCCCCEEeCcCCCCCCh--hhhccCC---------------------
Confidence 345566788899999999998 78653 78899999999999999888 5565554
Q ss_pred EccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCC
Q psy15407 186 FYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLK 264 (604)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~ 264 (604)
+|++|+|++|+|+.+.+..+..+++|++|+|++|+|+.++. ..|..++
T Consensus 72 -------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 72 -------------------------------KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp -------------------------------SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred -------------------------------CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 67777788888877555566668888888888888888753 6777888
Q ss_pred cccEEEccCCccccCCc---ccccCcccceeeeccCCCcc
Q psy15407 265 SLRIISLHGNDISMIPE---GAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 265 ~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~L~~Npl~ 301 (604)
+|++|+|++|+|+.+++ ..|..+++|+.|++++|++.
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888888888888776 56777888888888887753
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=7.2e-17 Score=155.23 Aligned_cols=127 Identities=26% Similarity=0.331 Sum_probs=117.5
Q ss_pred cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccc
Q psy15407 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIA 197 (604)
Q Consensus 118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 197 (604)
+.++.+++.|+.||.. + .++|++|+|++|+|+.+.+.+|.+++
T Consensus 22 ~~v~c~~~~l~~ip~~--~--~~~L~~L~Ls~n~i~~~~~~~~~~l~--------------------------------- 64 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAG--I--PTNAQILYLHDNQITKLEPGVFDSLI--------------------------------- 64 (229)
T ss_dssp TEEECTTSCCSSCCSC--C--CTTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred CEeEccCCCcCccCCC--C--CCCCCEEEcCCCccCccCHHHhhCcc---------------------------------
Confidence 7899999999999863 3 38999999999999999999888765
Q ss_pred cccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccc
Q psy15407 198 VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277 (604)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~ 277 (604)
+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+|+
T Consensus 65 -------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 65 -------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp -------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence 7888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCcccceeeeccCCCcc
Q psy15407 278 MIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 278 ~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
.||.. +..+++|+.|+|++|.+.
T Consensus 126 ~lp~~-~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 126 ELPRG-IERLTHLTHLALDQNQLK 148 (229)
T ss_dssp SCCTT-GGGCTTCSEEECCSSCCC
T ss_pred ccCcc-cccCCCCCEEECCCCcCC
Confidence 99875 688999999999999987
No 103
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=2.6e-17 Score=168.80 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=125.5
Q ss_pred CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
-+.|+++++.....+..+ ...+++|+|++|.+..++. |..+++|++|+|++|.|+.+++ |..+++|+.|++++
T Consensus 134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208 (347)
T ss_dssp CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred eeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCccccccc--ccCCCccceeeccc
Confidence 367888888444333223 4567888888888888764 7888888888888888888766 77788888888887
Q ss_pred CCCCccc------cccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407 174 CPPKCTC------TVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLIL 247 (604)
Q Consensus 174 ~~~~~~~------~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L 247 (604)
|...... .++.+.+..+ .+..... .... .+|++|+|++|.|+.++ .|..+++|++|+|
T Consensus 209 n~l~~~~~~~~~~~L~~L~l~~n---------~l~~~~~----~~~l-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l 272 (347)
T 4fmz_A 209 NQITDITPVANMTRLNSLKIGNN---------KITDLSP----LANL-SQLTWLEIGTNQISDIN--AVKDLTKLKMLNV 272 (347)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSS---------CCCCCGG----GTTC-TTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred CCCCCCchhhcCCcCCEEEccCC---------ccCCCcc----hhcC-CCCCEEECCCCccCCCh--hHhcCCCcCEEEc
Confidence 7654332 2333333332 2211111 1111 36777777777777763 4677777777777
Q ss_pred cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccccc
Q psy15407 248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC 304 (604)
Q Consensus 248 s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC 304 (604)
++|+|+.+ ..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|++.-.-
T Consensus 273 ~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred cCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 77777776 34677777777777777777777767777777777777777776443
No 104
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=99.69 E-value=5.5e-17 Score=173.86 Aligned_cols=121 Identities=28% Similarity=0.776 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCeeeeCCCCceEe-eCCCCCcC--CCCCcCCCcCCCCC--CCCCc---EEEeCCCCeEEe-cCCCCCC
Q psy15407 397 IDACYGNPCRNSGTCKLLEEGRFNC-ECAPGYTG--DRCEINIDDCLSHK--CENNA---TCVDLIQAYECR-CAPGFQG 467 (604)
Q Consensus 397 ~~~C~~~~C~~~~~C~~~~~~~~~C-~C~~g~~g--~~C~~~~~~C~~~~--C~~~~---~C~~~~~~~~C~-C~~g~~g 467 (604)
+++|..+||.++++|++...++|+| .|++||+| ..|+ ++++|...+ |.+++ +|+++.++|+|. |++||+|
T Consensus 3 IDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G 81 (634)
T 1yo8_A 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRG 81 (634)
T ss_dssp -CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEE
T ss_pred ccccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCCCccc
Confidence 3444444454444554432233455 45555544 3443 444554444 54444 455555555554 5555544
Q ss_pred CCcc--------------cCCCcCCCCCCCCCCCCceeecC----CCeEEecCCCCcC--CcCcc--cCCCCC
Q psy15407 468 EFCQ--------------TKTPFCAGEYNPCRNGARCLDHF----SHYTCECTPGFSG--VNCTV--NVDDCV 518 (604)
Q Consensus 468 ~~C~--------------~~~~~C~~~~~~C~~~~~C~~~~----~~~~C~C~~g~~g--~~c~~--~~~~C~ 518 (604)
..|+ ..+++|....++|.++++|++.. ++|+|.|++||+| ..|+. ++++|.
T Consensus 82 ~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~d~DiDeC~ 154 (634)
T 1yo8_A 82 NQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWP 154 (634)
T ss_dssp CCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSSEEECTTSSSSC
T ss_pred CccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCcccccccCccccc
Confidence 4332 23455554445566666666655 5666666666655 45542 455553
No 105
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=1.8e-16 Score=168.70 Aligned_cols=179 Identities=20% Similarity=0.140 Sum_probs=130.5
Q ss_pred CeEEcCCCCCCcCCCC-C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKD-I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~-l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
+.|++++|.|+.++.. + ...+++|+|++|+|+.+++. +|..+++|++|+|++|+|+.+++.+|..+++|+.|++++
T Consensus 102 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG-AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT-TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh-hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 6788888888877643 3 34567888888888877663 477788888888888888888777777777777777776
Q ss_pred CC---------CCccccccEEEccCCccc-------------cccccccceeeeeeccccCCccccceeecCCCCceeec
Q psy15407 174 CP---------PKCTCTVRVLFYDGRAGE-------------CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231 (604)
Q Consensus 174 ~~---------~~~~~~l~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l 231 (604)
+. +..+..|+.+.+..+... +.+..+.+.... ......+ .+|+.|+|++|+|+.+
T Consensus 181 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l-~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR--PGSFHGL-SSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC--GGGGTTC-TTCCEEECTTSCCCEE
T ss_pred CCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC--cccccCc-cCCCEEEeCCCcCceE
Confidence 42 333445666666544322 222222221111 1111222 3899999999999999
Q ss_pred cCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407 232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279 (604)
Q Consensus 232 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i 279 (604)
.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.--
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 999999999999999999999999999999999999999999998743
No 106
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=2.7e-16 Score=167.14 Aligned_cols=176 Identities=18% Similarity=0.144 Sum_probs=118.6
Q ss_pred CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~ 176 (604)
+.|++++|.|+.+|-.-...+++|+|++|.|+.++ |..+++|++|+|++|+|+.++ |..+++|+.|++++|.+
T Consensus 67 ~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 67 TKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTL 139 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCC
T ss_pred CEEEccCCcCCeEccccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcc
Confidence 67777777777776433556677777777777762 677777777777777777763 67777777777777654
Q ss_pred Ccc-----ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCc
Q psy15407 177 KCT-----CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK 251 (604)
Q Consensus 177 ~~~-----~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~ 251 (604)
..+ ..++.+.+..+. ...... ... ..+|++|+|++|+|+.++ +..+++|+.|+|++|+
T Consensus 140 ~~l~l~~l~~L~~L~l~~n~---------~~~~~~----~~~-l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 140 TEIDVSHNTQLTELDCHLNK---------KITKLD----VTP-QTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCS---------CCCCCC----CTT-CTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred ceeccccCCcCCEEECCCCC---------cccccc----ccc-CCcCCEEECCCCccceec---cccCCCCCEEECcCCc
Confidence 432 223333332221 111111 111 237888888888888775 6777888888888888
Q ss_pred ceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 252 LQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 252 l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
|+.+ .|..+++|+.|+|++|+|+.+| +..+++|+.|+|++|++.-
T Consensus 203 l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 203 ITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC
T ss_pred CCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCC
Confidence 8877 3777788888888888888876 6677788888888887753
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=1.9e-16 Score=168.29 Aligned_cols=174 Identities=21% Similarity=0.227 Sum_probs=141.6
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~ 174 (604)
+.|+++++.|+.+| .+ ...+++|+|++|+|+.++ |..+++|++|+|++|+|+.++ |..+++|+.|++++|
T Consensus 45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN 116 (457)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS
T ss_pred CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC
Confidence 78999999999998 45 467899999999999983 789999999999999999984 889999999999998
Q ss_pred CCCcc-----ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCC-ceeeccCCCCCCCCCCCeEEec
Q psy15407 175 PPKCT-----CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNN-QIGFLSNFTFSPLSKLSQLILS 248 (604)
Q Consensus 175 ~~~~~-----~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~Ls 248 (604)
.+..+ ..++.+.+..+ .+... . .+. ..+|++|+|++| .+..+ .|..+++|++|+|+
T Consensus 117 ~l~~l~~~~l~~L~~L~l~~N---------~l~~l-~----l~~-l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 117 KLTKLDVSQNPLLTYLNCARN---------TLTEI-D----VSH-NTQLTELDCHLNKKITKL---DVTPQTQLTTLDCS 178 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTS---------CCSCC-C----CTT-CTTCCEEECTTCSCCCCC---CCTTCTTCCEEECC
T ss_pred cCCeecCCCCCcCCEEECCCC---------cccee-c----ccc-CCcCCEEECCCCCccccc---ccccCCcCCEEECC
Confidence 65543 23333433333 22221 1 112 238999999999 45555 48889999999999
Q ss_pred CCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 249 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
+|+|+.++ +..+++|+.|+|++|+|+.++ |..+++|+.|+|++|.+.-
T Consensus 179 ~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 179 FNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp SSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC
T ss_pred CCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccc
Confidence 99999985 888999999999999999984 7889999999999998874
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=4.9e-17 Score=163.83 Aligned_cols=183 Identities=19% Similarity=0.155 Sum_probs=138.2
Q ss_pred cCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCcc
Q psy15407 101 CSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCT 179 (604)
Q Consensus 101 cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~ 179 (604)
+..+.++.+.. .-...+++|+|++|.|+.++. |..+++|++|+|++|+|+.+++ |..+++|+.|++++|.+..+
T Consensus 26 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~---~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 26 AGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV 100 (308)
T ss_dssp TTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC
T ss_pred hCCCCcCceecHHHcCCcCEEEeeCCCccCchh---hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc
Confidence 34445554321 224578999999999999863 8999999999999999999987 99999999999999976544
Q ss_pred ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccc
Q psy15407 180 CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA 259 (604)
Q Consensus 180 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~ 259 (604)
..+ .....+..+.+..+.+..... ...+ .+|++|+|++|+|+.+++ |..+++|+.|+|++|+|+.+++
T Consensus 101 ~~~---~~l~~L~~L~l~~n~l~~~~~----l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 101 SAI---AGLQSIKTLDLTSTQITDVTP----LAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp GGG---TTCTTCCEEECTTSCCCCCGG----GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred hhh---cCCCCCCEEECCCCCCCCchh----hcCC-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--
Confidence 311 111222333333333222211 1222 389999999999998876 8889999999999999998865
Q ss_pred cCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 260 LAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 260 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
|..+++|+.|+|++|+|+.+++ |..+++|++|+|++|++.-
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 8889999999999999998886 7889999999999998863
No 109
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=6.2e-17 Score=183.47 Aligned_cols=196 Identities=17% Similarity=0.141 Sum_probs=91.1
Q ss_pred CeEEcCCCCCCcCCCCCC--cc-CcEEecCCCcceeecCCCccCCCCC--CcEEeCCCCcceecCCCcC---C--CcccC
Q psy15407 97 TRVDCSQRGLKEIPKDIP--LY-TTELILNDNEIGKIKSDGLFGRLPN--LIKLDLRRNQVTGIEDNAF---E--GENDQ 166 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l~--~~-~~~L~L~~N~i~~i~~~~~f~~l~~--L~~L~Ls~N~i~~i~~~~f---~--~l~~L 166 (604)
+.|++++|.|+.||..+. .. ++.|+|++|.|+.||.. |..++. |+.|+|++|+|+...+... . .+.+|
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~--~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI--FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSC--CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchh--hhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 567777777777776552 23 67777777777766542 554433 6666666666655433221 1 22356
Q ss_pred CcCCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCC-C
Q psy15407 167 GCLGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF-S 237 (604)
Q Consensus 167 ~~L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f-~ 237 (604)
+.|+|++|.+..+ ..++.+.+..+... .++...+.... ...... .+|+.|+|++|+|+.++...+ .
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~---~~l~nl-~~L~~L~Ls~N~L~~lp~~l~~~ 750 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD---GNYKNT-YLLTTIDLRFNKLTSLSDDFRAT 750 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT---SCCTTG-GGCCEEECCSSCCCCCCGGGSTT
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc---cccccc-CCccEEECCCCCCccchHHhhhc
Confidence 6666666654422 12333333332211 11110000000 000000 145555555555554443222 2
Q ss_pred CCCCCCeEEecCCcceeeeccccCCCCcccEEEccC------CccccCCcccccCcccceeeeccCCCc
Q psy15407 238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG------NDISMIPEGAFADLHAITHLAIGGNPL 300 (604)
Q Consensus 238 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~------N~l~~i~~~~f~~l~~L~~L~L~~Npl 300 (604)
.+++|+.|+|++|+|+.+ |..+..+++|+.|+|++ |+|....+..|..+++|+.|+|++|++
T Consensus 751 ~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 455555555555555554 33344455555555543 334433333444555555555555554
No 110
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=4.8e-17 Score=184.64 Aligned_cols=85 Identities=22% Similarity=0.183 Sum_probs=47.1
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 296 (604)
+|++|+|++|+|+.+.+..|..+++|++|+|++|+|+...+..|..+++|++|+|++|+|+.+.+..|..+++|+.|+|+
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 45555555555555444455555555555555555555445555555555555555555554444445555556666666
Q ss_pred CCCcc
Q psy15407 297 GNPLY 301 (604)
Q Consensus 297 ~Npl~ 301 (604)
+|++.
T Consensus 499 ~N~l~ 503 (768)
T 3rgz_A 499 NNRLT 503 (768)
T ss_dssp SSCCC
T ss_pred CCccC
Confidence 55553
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=1.8e-16 Score=162.48 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=94.2
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~ 174 (604)
+.|+++++.|+.+|. + ...+++|+|++|.|+.++. |..+++|++|+|++|+|+.+++ |..+++|+.|++++|
T Consensus 69 ~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 69 EYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA---LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN 142 (347)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTC
T ss_pred cEEEccCCccccchh-hhcCCcCCEEEccCCcccCchH---HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCC
Confidence 667777777777664 3 3456777777777777642 6777777777777777777655 667777777777766
Q ss_pred CC-------CccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407 175 PP-------KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLIL 247 (604)
Q Consensus 175 ~~-------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L 247 (604)
.. .....++.+.+..+..... .. ... ..+|+.|+|++|.|+.+++ +..+++|+.|++
T Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------~~----~~~-l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 143 HNLSDLSPLSNMTGLNYLTVTESKVKDV---------TP----IAN-LTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206 (347)
T ss_dssp TTCCCCGGGTTCTTCCEEECCSSCCCCC---------GG----GGG-CTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred CCcccccchhhCCCCcEEEecCCCcCCc---------hh----hcc-CCCCCEEEccCCccccccc--ccCCCccceeec
Confidence 32 1222333343332221110 00 001 1245555555555554443 444444444444
Q ss_pred cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407 248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300 (604)
Q Consensus 248 s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl 300 (604)
++|.+..+.+ +..+++|++|+|++|+|+.+++ +..+++|+.|+|++|.+
T Consensus 207 ~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 4444444432 4444444455555554444443 44444444444444443
No 112
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=2.2e-16 Score=156.46 Aligned_cols=179 Identities=21% Similarity=0.159 Sum_probs=115.8
Q ss_pred CCeEEcCCCCCCcCCCC-C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKD-I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~-l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
-+.|++++++|+.+|.. + ...+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++++|+.|+++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 35666777776666542 2 23456677777776666553 36666677777777777766666666666666666666
Q ss_pred CCCC--------CccccccEEEccCCcccc----------------ccccccceeeeeeccccCCccccce----eecCC
Q psy15407 173 YCPP--------KCTCTVRVLFYDGRAGEC----------------YIAVELFSSRIRVSYYVGNYPVSTM----YRDLS 224 (604)
Q Consensus 173 ~~~~--------~~~~~l~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~L~----~L~Ls 224 (604)
+|.+ .....++.+.+..+.... .+..+.+..... ..+ ... .+|+ .|+|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~-~~l-~~L~~l~l~L~ls 185 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDL-RVL-HQMPLLNLSLDLS 185 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGG-HHH-HTCTTCCEEEECC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-HHh-hhh-hhccccceeeecC
Confidence 6532 233445555555443221 111111111100 000 000 1333 79999
Q ss_pred CCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279 (604)
Q Consensus 225 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i 279 (604)
+|+|+.+++..|... +|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.-
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 186 LNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SSCCCEECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCcccccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 999999999887754 899999999999999999999999999999999999854
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=1.7e-17 Score=152.78 Aligned_cols=131 Identities=22% Similarity=0.234 Sum_probs=106.6
Q ss_pred CccCcEEecCCCcceeecCCCccCCCC-CCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcc
Q psy15407 114 PLYTTELILNDNEIGKIKSDGLFGRLP-NLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAG 192 (604)
Q Consensus 114 ~~~~~~L~L~~N~i~~i~~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~ 192 (604)
+..+++|+|++|.|+.++. +..+. +|++|+|++|.|+.+ ..|..++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~---~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~---------------------------- 64 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIRKL--DGFPLLR---------------------------- 64 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC---GGGGTTCCSEEECCSSCCCEE--CCCCCCS----------------------------
T ss_pred cCCceEEEeeCCCCchhHH---hhhcCCCCCEEECCCCCCCcc--cccccCC----------------------------
Confidence 4567888888888887742 44444 888888888888887 3455443
Q ss_pred ccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEc
Q psy15407 193 ECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISL 271 (604)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L 271 (604)
+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.++. ..|..+++|+.|+|
T Consensus 65 ------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 65 ------------------------RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp ------------------------SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred ------------------------CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 78888999999999988778889999999999999988865 47888999999999
Q ss_pred cCCccccCCcc---cccCcccceeeeccCCCcc
Q psy15407 272 HGNDISMIPEG---AFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 272 s~N~l~~i~~~---~f~~l~~L~~L~L~~Npl~ 301 (604)
++|.|+.++.. ++..+++|+.|++++|+..
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999988875 5788999999999998765
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=2.1e-16 Score=157.85 Aligned_cols=161 Identities=24% Similarity=0.284 Sum_probs=133.8
Q ss_pred EcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCc
Q psy15407 100 DCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC 178 (604)
Q Consensus 100 ~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~ 178 (604)
.+....++.+.. .-...++.|+|++|.|+.++. |..+++|++|+|++|+|+.+++ |..+++|+.|++++|.+..
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcccChh---HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC
Confidence 344555554322 124567999999999999953 8999999999999999999987 8999999999999876543
Q ss_pred cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeecc
Q psy15407 179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD 258 (604)
Q Consensus 179 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 258 (604)
+.. ... ..+|++|+|++|+|+.++ .|..+++|+.|+|++|+|+.+ .
T Consensus 105 ~~~-----------------------------l~~-l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~ 150 (291)
T 1h6t_A 105 LSS-----------------------------LKD-LKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--T 150 (291)
T ss_dssp GGG-----------------------------GTT-CTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--G
T ss_pred Chh-----------------------------hcc-CCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--h
Confidence 211 111 138999999999999984 588999999999999999998 5
Q ss_pred ccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 259 ALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 259 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
.|..+++|++|+|++|+|+.+++ +..+++|+.|+|++|.+.
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 78999999999999999999987 889999999999999886
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.64 E-value=3.8e-16 Score=166.85 Aligned_cols=179 Identities=23% Similarity=0.283 Sum_probs=91.7
Q ss_pred CeEEcCCCCCCcCCCCC-CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI-PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP 175 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l-~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~ 175 (604)
+.|+++++.++.++.-- ...+++|+|++|.|+.+++ +..+++|++|+|++|+|+.++ .|..+++|+.|++++|.
T Consensus 180 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQ 254 (466)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSC
T ss_pred CEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCc
Confidence 56777777777665311 3456777777777766654 556677777777777766653 46666666777666665
Q ss_pred CCcc------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecC
Q psy15407 176 PKCT------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSY 249 (604)
Q Consensus 176 ~~~~------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~ 249 (604)
+... ..++.+.+..+. +..... .... .+|+.|+|++|+|+.+++ +..+++|+.|+|++
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~---------l~~~~~----~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 255 ISNLAPLSGLTKLTELKLGANQ---------ISNISP----LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318 (466)
T ss_dssp CCCCGGGTTCTTCSEEECCSSC---------CCCCGG----GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred cccchhhhcCCCCCEEECCCCc---------cCcccc----ccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence 4332 223333332221 111100 0111 244555555555544443 44445555555555
Q ss_pred CcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407 250 NKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300 (604)
Q Consensus 250 N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl 300 (604)
|+|+.+.+ +..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|++
T Consensus 319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp SCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred CcCCCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCcc
Confidence 55544433 344445555555555554442 244444555555555444
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=7.4e-17 Score=144.01 Aligned_cols=129 Identities=21% Similarity=0.219 Sum_probs=110.7
Q ss_pred CCccCcEEecCCCcce--eecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCC
Q psy15407 113 IPLYTTELILNDNEIG--KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGR 190 (604)
Q Consensus 113 l~~~~~~L~L~~N~i~--~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~ 190 (604)
.+..++.|+|++|.|+ .++.. |..+++|++|+|++|+|+.+ ..|..++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~-------------------------- 64 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL--TDEFEELEFLSTINVGLTSI--ANLPKLN-------------------------- 64 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC--CTTCTTCCEEECTTSCCCCC--TTCCCCT--------------------------
T ss_pred CCccCeEEEccCCcCChhHHHHH--HhhcCCCcEEECcCCCCCCc--hhhhcCC--------------------------
Confidence 4577899999999998 77653 89999999999999999988 4555543
Q ss_pred ccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeee-ccccCCCCcccEE
Q psy15407 191 AGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRII 269 (604)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L 269 (604)
+|++|+|++|+|+...+..+..+++|++|+|++|+|+.++ +..|..+++|++|
T Consensus 65 --------------------------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 65 --------------------------KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp --------------------------TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred --------------------------CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 7888899999999855557778999999999999999974 3788999999999
Q ss_pred EccCCccccCCc---ccccCcccceeeeccC
Q psy15407 270 SLHGNDISMIPE---GAFADLHAITHLAIGG 297 (604)
Q Consensus 270 ~Ls~N~l~~i~~---~~f~~l~~L~~L~L~~ 297 (604)
+|++|+|+.+++ ..|..+++|+.|++++
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999987 6788999999999864
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=3.9e-16 Score=153.38 Aligned_cols=149 Identities=19% Similarity=0.181 Sum_probs=125.3
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~ 174 (604)
+.|++++++|+.+| .+ ...+++|+|++|+|+.+++ |..+++|++|+|++|+|+.+++..+ .+|+.|++++|
T Consensus 44 ~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~---~~L~~L~L~~N 116 (263)
T 1xeu_A 44 QNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNN 116 (263)
T ss_dssp SEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC---SSCCEEECCSS
T ss_pred cEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc---CcccEEEccCC
Confidence 78999999999998 34 5678999999999999975 8999999999999999999876544 78888888887
Q ss_pred CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407 175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC 254 (604)
Q Consensus 175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~ 254 (604)
.+..+.. ... ..+|++|+|++|+|+.++ .|..+++|++|+|++|+|+.
T Consensus 117 ~l~~~~~-----------------------------l~~-l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 117 ELRDTDS-----------------------------LIH-LKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSBSGG-----------------------------GTT-CTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred ccCCChh-----------------------------hcC-cccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 6442210 111 138999999999999996 68899999999999999999
Q ss_pred eeccccCCCCcccEEEccCCccccCCcccccC
Q psy15407 255 IDRDALAGLKSLRIISLHGNDISMIPEGAFAD 286 (604)
Q Consensus 255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~ 286 (604)
+ ..|..+++|+.|+|++|+|+..+...+..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~~~~~~~~ 194 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNEPVKYQPE 194 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECCCEECCSE
T ss_pred h--HHhccCCCCCEEeCCCCcccCCccccccc
Confidence 8 67899999999999999999887654443
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=2.5e-15 Score=159.50 Aligned_cols=180 Identities=18% Similarity=0.172 Sum_probs=101.5
Q ss_pred CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
-+.|++++|.|+.+|. + ...+++|+|++|+|+.++.. .++|++|+|++|+|+.++ .|..+++|+.|++++
T Consensus 175 L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 175 LEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADN 246 (454)
T ss_dssp CCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred ccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCC
Confidence 4567777777777663 3 33456666666666655431 145666666666666554 255666666666665
Q ss_pred CCCCcc----ccccEEEccCCccc-----------cccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCC
Q psy15407 174 CPPKCT----CTVRVLFYDGRAGE-----------CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSP 238 (604)
Q Consensus 174 ~~~~~~----~~l~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~ 238 (604)
|.+..+ ..++.+.+..+... +.+..+.+.. +. ..+.+|++|+|++|+|+.++..
T Consensus 247 N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~------l~-~~~~~L~~L~l~~N~l~~i~~~---- 315 (454)
T 1jl5_A 247 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG------LS-ELPPNLYYLNASSNEIRSLCDL---- 315 (454)
T ss_dssp SCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE------ES-CCCTTCCEEECCSSCCSEECCC----
T ss_pred CcCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCc------cc-CcCCcCCEEECcCCcCCcccCC----
Confidence 544322 23344444332211 1111111111 10 1234667777777777665421
Q ss_pred CCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 239 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
.++|++|+|++|+|+.++.. +++|++|+|++|+|+.+|. .+++|+.|+|++|++..
T Consensus 316 ~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 316 PPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred cCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCc
Confidence 24677777777777776432 4677777777777777766 35677777777777765
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=2.5e-15 Score=159.53 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=38.9
Q ss_pred CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~ 176 (604)
+.|++++|.|+.||. .+..+++|+|++|+|+.++. + .++|++|+|++|+|+.|+ .|..+.+|+.|++++|.+
T Consensus 94 ~~L~l~~n~l~~lp~-~~~~L~~L~l~~n~l~~l~~---~--~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 94 ESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALSD---L--PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp SEEECCSSCCSSCCC-CCTTCCEEECCSSCCSCCCS---C--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCC
T ss_pred CEEEccCCcCCcccc-ccCCCcEEECCCCccCcccC---C--CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcC
Confidence 445555555555553 23445555555555554432 1 145666666666666654 366666666666665544
Q ss_pred C
Q psy15407 177 K 177 (604)
Q Consensus 177 ~ 177 (604)
.
T Consensus 166 ~ 166 (454)
T 1jl5_A 166 K 166 (454)
T ss_dssp S
T ss_pred c
Confidence 3
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=2.1e-16 Score=173.14 Aligned_cols=163 Identities=23% Similarity=0.266 Sum_probs=136.2
Q ss_pred EEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCC
Q psy15407 99 VDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177 (604)
Q Consensus 99 l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~ 177 (604)
+.++.+.++.++. .-...++.|+|++|.|..++. |..|++|+.|+|++|+|+.+++ |..+++|+.|+|++|.+.
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT---GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCCCCCChH---HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence 4556666665543 124567999999999999963 8999999999999999999987 889999999999987654
Q ss_pred ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec
Q psy15407 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR 257 (604)
Q Consensus 178 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~ 257 (604)
.+.. ... ..+|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+
T Consensus 101 ~l~~-----------------------------l~~-l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 101 DLSS-----------------------------LKD-LKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp CCTT-----------------------------STT-CTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred CChh-----------------------------hcc-CCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--
Confidence 2110 111 238999999999999985 488999999999999999998
Q ss_pred cccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 258 DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 258 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
..|..+++|+.|+|++|+|+.+++ |..+++|+.|+|++|++.-
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 578999999999999999999987 8899999999999998863
No 121
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.4e-16 Score=160.76 Aligned_cols=192 Identities=14% Similarity=0.046 Sum_probs=133.8
Q ss_pred CeEEcCCCCCCc-----CCCCC-CccCcEEecCCCcceeecCCCcc-CCCCCCcEEeCCCCcceecCC----CcCCCccc
Q psy15407 97 TRVDCSQRGLKE-----IPKDI-PLYTTELILNDNEIGKIKSDGLF-GRLPNLIKLDLRRNQVTGIED----NAFEGEND 165 (604)
Q Consensus 97 ~~l~cs~~~L~~-----iP~~l-~~~~~~L~L~~N~i~~i~~~~~f-~~l~~L~~L~Ls~N~i~~i~~----~~f~~l~~ 165 (604)
+.+.+++..++. ++..+ ...+++|+|++|.|+.+.+..+| ..+++|++|+|++|+|+...+ ..|..+++
T Consensus 67 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 146 (310)
T 4glp_A 67 RRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPG 146 (310)
T ss_dssp CEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSC
T ss_pred eEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccC
Confidence 566777766642 11111 23489999999999877665433 899999999999999987433 45567889
Q ss_pred CCcCCCCCCCCCc--------cccccEEEccCCccccccccccceee--eeeccccCCccccceeecCCCCceeeccCC-
Q psy15407 166 QGCLGDNYCPPKC--------TCTVRVLFYDGRAGECYIAVELFSSR--IRVSYYVGNYPVSTMYRDLSNNQIGFLSNF- 234 (604)
Q Consensus 166 L~~L~l~~~~~~~--------~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~- 234 (604)
|+.|+|++|.+.. +..++.+.++.+. +... .......+.++ +|++|+|++|+|+.++..
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~ 216 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP---------GLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVC 216 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT---------TCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHH
T ss_pred CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC---------CccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHH
Confidence 9999999886532 2334444444432 1111 00011112233 788999999999876543
Q ss_pred --CCCCCCCCCeEEecCCcceeeeccccCCC---CcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407 235 --TFSPLSKLSQLILSYNKLQCIDRDALAGL---KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 235 --~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l---~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
.|..+++|++|+|++|+|+.+.|..+..+ ++|++|+|++|+|+.||...+ ++|+.|+|++|.+.
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLN 285 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCC
Confidence 35678899999999999998866566555 699999999999998887654 68899999999886
No 122
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=155.88 Aligned_cols=167 Identities=18% Similarity=0.173 Sum_probs=131.3
Q ss_pred cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCcc--------ccccEEEccC
Q psy15407 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCT--------CTVRVLFYDG 189 (604)
Q Consensus 118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~--------~~l~~l~~~~ 189 (604)
...++++|.|+.||.. +. ++|++|+|++|+|+.+++.+|.++++|+.|++++|.+..+ ..++.+.+..
T Consensus 34 ~~c~~~~~~l~~iP~~--~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 34 GICKGSSGSLNSIPSG--LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp SEEECCSTTCSSCCTT--CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeeCCCCCccccccc--cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 4589999999999863 33 5899999999999999999999999999999999864432 3344444443
Q ss_pred CccccccccccceeeeeeccccCCccccceeecCCCCceeeccC-CCCCCCCCCCeEEecCC-cceeeeccccCCCCccc
Q psy15407 190 RAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYN-KLQCIDRDALAGLKSLR 267 (604)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~ 267 (604)
+. +..... ...... .+|++|+|++|+|+.++. ..|..+++|++|+|++| .+..+++..|..+++|+
T Consensus 110 n~---------l~~~~~--~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 110 NY---------LSNLSS--SWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp SC---------CSSCCH--HHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred Cc---------CCcCCH--hHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 32 211110 001122 388899999999998887 78889999999999998 58888888899999999
Q ss_pred EEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300 (604)
Q Consensus 268 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl 300 (604)
+|+|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 999999999988887888899999999998876
No 123
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=99.61 E-value=3.2e-16 Score=170.04 Aligned_cols=134 Identities=27% Similarity=0.700 Sum_probs=101.9
Q ss_pred CCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCC---------cCCCC----CCCCCcEEEeCCCCeEEecC-----
Q psy15407 401 YGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINID---------DCLSH----KCENNATCVDLIQAYECRCA----- 462 (604)
Q Consensus 401 ~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~---------~C~~~----~C~~~~~C~~~~~~~~C~C~----- 462 (604)
.+.+|.++|+|.. ..|.|.+||+|..|+.+++ .|... +|.++|+|+. ..|.|.
T Consensus 433 ~s~~Cs~~G~C~~-----g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----G~C~C~~~~~~ 503 (687)
T 3k6s_B 433 DRSLCHGKGFLEC-----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVP 503 (687)
T ss_dssp CSSTGGGSEEESS-----SSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET----TEEEECCCCST
T ss_pred CCCCCCCCCEEeC-----CEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC----CEEEcCCCCCC
Confidence 4567888888852 3699999999999985443 47643 4888899983 279999
Q ss_pred -CCCCCCCcccCCCcCCCC-CCCCCC--CCceeecCCCeEEecCCCCcCCcCcc--cCCCCCCC---CCCCCCEEeeCCC
Q psy15407 463 -PGFQGEFCQTKTPFCAGE-YNPCRN--GARCLDHFSHYTCECTPGFSGVNCTV--NVDDCVNH---MCQNGGTCVDGIN 533 (604)
Q Consensus 463 -~g~~g~~C~~~~~~C~~~-~~~C~~--~~~C~~~~~~~~C~C~~g~~g~~c~~--~~~~C~~~---~C~~~~~C~~~~~ 533 (604)
+||.|..|+.+...|... ...|.+ +|+|+. .+|.|.+||+|..|+. +.+.|... +|.++|+|+.
T Consensus 504 ~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~----g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~--- 576 (687)
T 3k6s_B 504 GKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC--- 576 (687)
T ss_dssp TCCEESTTSCEESSCSCEETTEETSHHHHEEEET----TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS---
T ss_pred CCCccccccccccccccCCCCcCcCCCCCCeEEC----CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC---
Confidence 999999998767777632 235887 788874 3799999999999873 35678654 7988899976
Q ss_pred CeEeeeCCCCccCCCCcC
Q psy15407 534 DYTCKCEGDFVGKFCEIA 551 (604)
Q Consensus 534 ~y~C~C~~G~~G~~C~~~ 551 (604)
++|.|++||+|..|+.+
T Consensus 577 -g~C~C~~Gy~G~~Ce~c 593 (687)
T 3k6s_B 577 -NVCECHSGYQLPLCQEC 593 (687)
T ss_dssp -SCBCCSTTCCTTTTCCC
T ss_pred -CEEECCCCCcCCCCCCC
Confidence 37999999999999863
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=2.2e-15 Score=153.28 Aligned_cols=200 Identities=16% Similarity=0.156 Sum_probs=131.9
Q ss_pred CeEEcCCCCCC--------------------cCCCCCC-----------ccCcEEecCCCcceeecCCCccCCCCCCcEE
Q psy15407 97 TRVDCSQRGLK--------------------EIPKDIP-----------LYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145 (604)
Q Consensus 97 ~~l~cs~~~L~--------------------~iP~~l~-----------~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L 145 (604)
+.||+++|+|. .||...+ ..++.|+|.. .|+.|+. .+|.++++|+.|
T Consensus 52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~-~aF~~~~~L~~l 129 (329)
T 3sb4_A 52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED-AAFKGCDNLKIC 129 (329)
T ss_dssp CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT-TTTTTCTTCCEE
T ss_pred eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhH-HHhhcCcccceE
Confidence 68888888888 4444432 3346677776 6777765 347777777777
Q ss_pred eCCCCcceecCCCcCCCcccCCcCCCCCCC----CCccccccEEEccCCcccccc---------------ccccceee--
Q psy15407 146 DLRRNQVTGIEDNAFEGENDQGCLGDNYCP----PKCTCTVRVLFYDGRAGECYI---------------AVELFSSR-- 204 (604)
Q Consensus 146 ~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~----~~~~~~l~~l~~~~~~~~~~~---------------~~~~~~~~-- 204 (604)
+|++|.++.|.+.+|.+..++..|.+.... ...+..............+.+ ....+...
T Consensus 130 ~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~ 209 (329)
T 3sb4_A 130 QIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTI 209 (329)
T ss_dssp EBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEE
T ss_pred EcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEE
Confidence 777777777777777766655555544310 000000011100000000000 00000000
Q ss_pred -e-----eeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCccc-EEEccCCccc
Q psy15407 205 -I-----RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR-IISLHGNDIS 277 (604)
Q Consensus 205 -~-----~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~-~L~Ls~N~l~ 277 (604)
. ....+. ....+|+.|+|++|+|+.|+..+|.++.+|+.|+|.+| |+.|+..+|.++.+|+ .|+|.+ .|+
T Consensus 210 ~~~l~~~~~~~l~-~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 210 EGKLDNADFKLIR-DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp EECCCHHHHHHHH-HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred eeeecHHHHHHHH-HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence 0 000000 01248999999999999999999999999999999998 9999999999999999 999998 899
Q ss_pred cCCcccccCcccceeeeccCCCcc
Q psy15407 278 MIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 278 ~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
.|++.+|..+++|+.|+|.+|.+.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCC
T ss_pred EEchhhhhCCccCCEEEeCCCccC
Confidence 999999999999999999988774
No 125
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.60 E-value=2.5e-16 Score=136.31 Aligned_cols=106 Identities=22% Similarity=0.398 Sum_probs=89.4
Q ss_pred CeEEecCCcce--eeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCcccccccccc--c
Q psy15407 243 SQLILSYNKLQ--CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDY--V 318 (604)
Q Consensus 243 ~~L~Ls~N~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~--~ 318 (604)
..++.+++.|+ .|+.. + -.+|++|+|++|+|+.|++++|..+++|+.|+|++|||.|||.+.||..|++... .
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~ 87 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred CEEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence 36777788877 77543 2 1468999999999999999999999999999999999999999999999998653 2
Q ss_pred cCCccccCCCCcccccccccCCCCceeecCccc
Q psy15407 319 EPGIARCTEPASMRDKLLLTAPASSFQCKEKVS 351 (604)
Q Consensus 319 ~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~~~~ 351 (604)
....++|++|..++|+.+.++...+|.|.+...
T Consensus 88 ~~~~~~C~~P~~l~g~~l~~l~~~~l~c~C~~~ 120 (130)
T 3rfe_A 88 PYRDLRCVAPPALRGRLLPYLAEDELRAACAPG 120 (130)
T ss_dssp GGTTCBCCBSTTTTTCBGGGCCHHHHHHTTCC-
T ss_pred cccCcEeCcChHHcCCCcccCCHHHhhCcCCCC
Confidence 345689999999999999999999999876543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=5.5e-16 Score=141.33 Aligned_cols=132 Identities=19% Similarity=0.120 Sum_probs=115.1
Q ss_pred CCeEEcCCCCCC--cCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCC
Q psy15407 96 GTRVDCSQRGLK--EIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD 171 (604)
Q Consensus 96 ~~~l~cs~~~L~--~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l 171 (604)
-+.|+++++.|+ .+|..+ ...+++|+|++|.|+.+ . .|..+++|++|+|++|+|+.+.+..|..++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------- 95 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S--NLPKLPKLKKLELSENRIFGGLDMLAEKLP------- 95 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S--SCCCCSSCCEEEEESCCCCSCCCHHHHHCT-------
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h--hhccCCCCCEEECcCCcCchHHHHHHhhCC-------
Confidence 478999999999 899875 46789999999999998 3 399999999999999999986555554443
Q ss_pred CCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccC-CCCCCCCCCCeEEecCC
Q psy15407 172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYN 250 (604)
Q Consensus 172 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N 250 (604)
+|++|+|++|+|+.++. ..|..+++|+.|+|++|
T Consensus 96 ---------------------------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 96 ---------------------------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp ---------------------------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred ---------------------------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 78899999999999864 68899999999999999
Q ss_pred cceeeec---cccCCCCcccEEEccCCccccCCcc
Q psy15407 251 KLQCIDR---DALAGLKSLRIISLHGNDISMIPEG 282 (604)
Q Consensus 251 ~l~~i~~---~~f~~l~~L~~L~Ls~N~l~~i~~~ 282 (604)
+|+.+++ ..|..+++|+.|++++|.+..+|..
T Consensus 131 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 131 EVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp GGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9999976 6899999999999999999998864
No 127
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=2.1e-15 Score=161.10 Aligned_cols=186 Identities=21% Similarity=0.184 Sum_probs=115.3
Q ss_pred CeEEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407 97 TRVDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP 175 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~ 175 (604)
+.|+++ +.+..++. .-...+++|+|++|.|+.++. |..+++|++|+|++|.|+.+.+ +..+++|+.|++++|.
T Consensus 159 ~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 159 QQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232 (466)
T ss_dssp SEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred cEeecC-CcccCchhhccCCCCCEEECcCCcCCCChh---hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC
Confidence 455554 34444432 113456777788777777643 6777778888888777777665 6667777777777776
Q ss_pred CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee
Q psy15407 176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255 (604)
Q Consensus 176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i 255 (604)
+..+..+. ....+..+.+..+.+..... .... .+|+.|+|++|.|+.+++ +..+++|+.|+|++|+|+.+
T Consensus 233 l~~~~~l~---~l~~L~~L~l~~n~l~~~~~----~~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 302 (466)
T 1o6v_A 233 LKDIGTLA---SLTNLTDLDLANNQISNLAP----LSGL-TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302 (466)
T ss_dssp CCCCGGGG---GCTTCSEEECCSSCCCCCGG----GTTC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC
T ss_pred cccchhhh---cCCCCCEEECCCCccccchh----hhcC-CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc
Confidence 54332111 11122222222222221111 1111 367777777777777765 66777778888888777777
Q ss_pred eccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407 256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 256 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C 302 (604)
++ +..+++|+.|+|++|+|+.+++ +..+++|+.|+|++|++.-
T Consensus 303 ~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 303 SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp GG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred hh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 54 6677777788888887777765 5677777777777777654
No 128
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=99.60 E-value=3.6e-17 Score=147.88 Aligned_cols=137 Identities=26% Similarity=0.680 Sum_probs=97.2
Q ss_pred CCCcCC-CCCCCCCcEEEeCCCCeEEecCCCCC----CCCcccCCCc--CCCCCCCCC--CCCceeecCC----CeEEec
Q psy15407 435 NIDDCL-SHKCENNATCVDLIQAYECRCAPGFQ----GEFCQTKTPF--CAGEYNPCR--NGARCLDHFS----HYTCEC 501 (604)
Q Consensus 435 ~~~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~C~~~~~~--C~~~~~~C~--~~~~C~~~~~----~~~C~C 501 (604)
+|++|. ..+|. +++|+++.++|+|.|++||+ |..|+ ++++ |.....+|. +++.|++..+ +|+|.|
T Consensus 2 dideC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C 79 (162)
T 1uzk_A 2 DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC 79 (162)
T ss_dssp CCCGGGSTTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHHHT
T ss_pred ccccCCCCCCCC-CCEeECCCCCEEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeC
Confidence 688888 47886 68999999999999999998 78886 5554 654434442 4678988776 799999
Q ss_pred CCCCc-CCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCC--CCccCCCCcCcccccCCCCCCCCCC--CCCCCCceeC
Q psy15407 502 TPGFS-GVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG--DFVGKFCEIAPFVAMMYPQTSPCQH--HDCKNGICFQ 576 (604)
Q Consensus 502 ~~g~~-g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~--G~~G~~C~~~~~~~~~~~~~~~C~~--~~C~~g~C~~ 576 (604)
++||. |..|+. |.. ...++|+|.|++ ||+|..-... ...+++|.. +.|.++.|++
T Consensus 80 ~~G~~~~~~C~~---------C~~-----~~~~~y~C~C~~g~G~~~~~~~~~------c~dideC~~~~~~C~~g~C~n 139 (162)
T 1uzk_A 80 SLGKAWGTPCEM---------CPA-----VNTSEYKILCPGGEGFRPNPITVI------LEDIDECQELPGLCQGGKCIN 139 (162)
T ss_dssp TTCCEETTTTEE---------CCC-----TTSHHHHHHCTTCTTEEECTTTCC------EEECCHHHHCGGGGBTSEEEE
T ss_pred CCCCCcCCCccc---------CCC-----CCCCCceeECCCCCCcccCCCCCc------cCccccccCCCCCcCCCEeEc
Confidence 99998 666641 222 246789999998 9998631110 012677864 4588877999
Q ss_pred CCCCCCeeeecCCCCcCCC
Q psy15407 577 PQGSNDYLCKCAPGYSGKE 595 (604)
Q Consensus 577 ~~g~~~~~C~C~~G~~G~~ 595 (604)
+. ++|+|.|++||+|..
T Consensus 140 ~~--gsy~C~C~~Gy~g~~ 156 (162)
T 1uzk_A 140 TF--GSFQCRCPTGYYLNE 156 (162)
T ss_dssp CS--SCEEEECCTTCCBCT
T ss_pred CC--CCEEeeCCCCccCCC
Confidence 99 789999999999865
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1.1e-15 Score=165.68 Aligned_cols=192 Identities=18% Similarity=0.166 Sum_probs=139.5
Q ss_pred CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP 175 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~ 175 (604)
-+.|++++|.|+.|| .++..++.|+|++|.|+.|+. |.+ +|++|+|++|+|+.|+. .+++|+.|+|++|.
T Consensus 82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~---l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 82 ITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE---LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQ 151 (571)
T ss_dssp CSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC---CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSC
T ss_pred CCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch---hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCc
Confidence 579999999999999 788899999999999999865 554 99999999999999877 57899999999997
Q ss_pred CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCC-------CeEEec
Q psy15407 176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKL-------SQLILS 248 (604)
Q Consensus 176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L-------~~L~Ls 248 (604)
+..++. ....+..+.+..+.+..... + ..+|++|+|++|+|+.++. |.. +| +.|+|+
T Consensus 152 l~~lp~-----~l~~L~~L~Ls~N~L~~lp~---l----~~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 152 LTMLPE-----LPTSLEVLSVRNNQLTFLPE---L----PESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CSCCCC-----CCTTCCEEECCSSCCSCCCC---C----CTTCCEEECCSSCCSSCCC--CC----------CCEEEECC
T ss_pred cCcCCC-----cCCCcCEEECCCCCCCCcch---h----hCCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecC
Confidence 765443 12233334444443333211 1 2599999999999999887 543 67 999999
Q ss_pred CCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccc-------eeeeccC-------CCcccccCCCccccccc
Q psy15407 249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAI-------THLAIGG-------NPLYCDCGLAWLSEWVK 314 (604)
Q Consensus 249 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L-------~~L~L~~-------Npl~CdC~l~~l~~~~~ 314 (604)
+|+|+.|+...+ .+++|+.|+|++|+|+...+..|..+..+ ..+++++ || .|+|.+.||..+.+
T Consensus 216 ~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~Wl~~~~~ 293 (571)
T 3cvr_A 216 ENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP-LADAVTAWFPENKQ 293 (571)
T ss_dssp SSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC----------C-CSHHHHTTCC----
T ss_pred CCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeeccccccccccc-chhhHHHHhhhhcc
Confidence 999999966555 49999999999999997666555554321 2234444 55 79999999987764
Q ss_pred c
Q psy15407 315 R 315 (604)
Q Consensus 315 ~ 315 (604)
.
T Consensus 294 ~ 294 (571)
T 3cvr_A 294 S 294 (571)
T ss_dssp -
T ss_pred c
Confidence 3
No 130
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.1e-15 Score=143.35 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=106.1
Q ss_pred ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC 194 (604)
Q Consensus 115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~ 194 (604)
..++.|+|++|.|+.++ . +..+++|++|+|++|.++.++ .|..++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~------------------------------ 88 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-G--IEYAHNIKDLTINNIHATNYN--PISGLS------------------------------ 88 (197)
T ss_dssp HTCCEEEEESSCCSCCT-T--GGGCTTCSEEEEESCCCSCCG--GGTTCT------------------------------
T ss_pred CCccEEeccCCCccChH-H--HhcCCCCCEEEccCCCCCcch--hhhcCC------------------------------
Confidence 45677777777777775 2 677777788888777665543 333332
Q ss_pred ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCC
Q psy15407 195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274 (604)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 274 (604)
+|++|+|++|+|+...+..|..+++|++|+|++|+|+...+..|..+++|++|+|++|
T Consensus 89 ----------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 89 ----------------------NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp ----------------------TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred ----------------------CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 7889999999999877778999999999999999999877788999999999999999
Q ss_pred c-cccCCcccccCcccceeeeccCCCcc
Q psy15407 275 D-ISMIPEGAFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 275 ~-l~~i~~~~f~~l~~L~~L~L~~Npl~ 301 (604)
+ |+.++ .|..+++|+.|+|++|++.
T Consensus 147 ~~i~~~~--~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 147 GAITDIM--PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp TBCCCCG--GGGGCSSCCEEECTTBCCC
T ss_pred CCccccH--hhcCCCCCCEEECCCCCCc
Confidence 8 98887 4889999999999999875
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.4e-15 Score=156.19 Aligned_cols=210 Identities=19% Similarity=0.160 Sum_probs=153.0
Q ss_pred CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcc-eeecCCCccCCCCCCcE-EeCCCCcceecCCCcCCCcccCCcCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEI-GKIKSDGLFGRLPNLIK-LDLRRNQVTGIEDNAFEGENDQGCLG 170 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i-~~i~~~~~f~~l~~L~~-L~Ls~N~i~~i~~~~f~~l~~L~~L~ 170 (604)
.+.|++++|+|++||... ...+++|+|++|+| +.|+. ++|.+|++|++ ++++.|+|+.|++++|.++++|+.|+
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 478999999999999864 35679999999998 45655 56999999875 67778999999999999999999999
Q ss_pred CCCCCCCccc--------cccEEEccCCcccccccccc-----------ceeeeeeccccC--CccccceeecCC-CCce
Q psy15407 171 DNYCPPKCTC--------TVRVLFYDGRAGECYIAVEL-----------FSSRIRVSYYVG--NYPVSTMYRDLS-NNQI 228 (604)
Q Consensus 171 l~~~~~~~~~--------~l~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~L~~L~Ls-~N~i 228 (604)
+++|.+..+. .+..+.+........+.... ......+..+.. ....+|+.|+|+ +|.|
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTC
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcc
Confidence 9887554332 22233332221111111110 001111111111 112478899997 5899
Q ss_pred eeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCc
Q psy15407 229 GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAW 308 (604)
Q Consensus 229 ~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~ 308 (604)
+.|++++|..+++|++|+|++|+|+.|++..|.+|++|+.+++ +.++.+|. +..+++|+.+++. |+++|.|-..|
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~lP~--l~~l~~L~~l~l~-~~~~c~~~~~~ 265 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALMEASLT-YPSHCCAFANW 265 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCCCCC--TTTCCSCCEEECS-CHHHHHHHHHS
T ss_pred cCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCcCCC--chhCcChhhCcCC-CCccccchhhh
Confidence 9999999999999999999999999999988887777766544 56888885 7889999999996 88999876555
Q ss_pred ccc
Q psy15407 309 LSE 311 (604)
Q Consensus 309 l~~ 311 (604)
..+
T Consensus 266 ~~~ 268 (350)
T 4ay9_X 266 RRQ 268 (350)
T ss_dssp CCC
T ss_pred hhh
Confidence 543
No 132
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=99.58 E-value=9.8e-16 Score=135.40 Aligned_cols=114 Identities=24% Similarity=0.740 Sum_probs=72.0
Q ss_pred CCCCCCCeeeeCCCCceEeeCCCCCcC---------CCCCcCCCcCCCC---CCCCCcEEEeCCCCeEEecCCCCCCCCc
Q psy15407 403 NPCRNSGTCKLLEEGRFNCECAPGYTG---------DRCEINIDDCLSH---KCENNATCVDLIQAYECRCAPGFQGEFC 470 (604)
Q Consensus 403 ~~C~~~~~C~~~~~~~~~C~C~~g~~g---------~~C~~~~~~C~~~---~C~~~~~C~~~~~~~~C~C~~g~~g~~C 470 (604)
.+|.++++|++ .|.|.|++||+| ..|+ ++++|... +|.++++|+++.++|+|.|++||+|..+
T Consensus 7 ~~C~~~~~C~~----~~~C~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~ 81 (143)
T 2bou_A 7 RWCPQDSSCVN----ATACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSG 81 (143)
T ss_dssp TTCCTTEEESS----SSCEEECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTC
T ss_pred CcCCCCCEEcC----CCEEeCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcC
Confidence 45666666643 266666666665 3453 55666554 5655566666666666666666665544
Q ss_pred ccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCC--CCCCCCCEEeeCCCCeEeeeCCCCccCCC
Q psy15407 471 QTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN--HMCQNGGTCVDGINDYTCKCEGDFVGKFC 548 (604)
Q Consensus 471 ~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~G~~C 548 (604)
+... . ...+..|. ++++|.. ++|.++++|+++.++|+|.|++||+|...
T Consensus 82 ~~~~----------~------------------~~~~~~C~-dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~ 132 (143)
T 2bou_A 82 AKTF----------K------------------NESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHG 132 (143)
T ss_dssp CSCB----------S------------------SGGGCCEE-ECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTT
T ss_pred cccc----------c------------------cCCCCCcC-CccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCC
Confidence 3110 0 01122454 6788873 78999999999999999999999998876
Q ss_pred Cc
Q psy15407 549 EI 550 (604)
Q Consensus 549 ~~ 550 (604)
..
T Consensus 133 ~~ 134 (143)
T 2bou_A 133 IP 134 (143)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 133
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=99.57 E-value=1e-16 Score=144.86 Aligned_cols=132 Identities=24% Similarity=0.675 Sum_probs=98.2
Q ss_pred cCCCCC-CCCCCCCCeeeeCCCCceEeeCCCCCc----CCCCCcCCCc--CCCC--CC--CCCcEEEeCCC----CeEEe
Q psy15407 396 MIDACY-GNPCRNSGTCKLLEEGRFNCECAPGYT----GDRCEINIDD--CLSH--KC--ENNATCVDLIQ----AYECR 460 (604)
Q Consensus 396 ~~~~C~-~~~C~~~~~C~~~~~~~~~C~C~~g~~----g~~C~~~~~~--C~~~--~C--~~~~~C~~~~~----~~~C~ 460 (604)
+||+|. .+||. +++|++ ..++|+|.|++||+ |..|+ ++++ |... +| .++++|++..+ +|.|.
T Consensus 2 dideC~~~~~C~-~~~C~n-~~gsy~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~ 78 (162)
T 1uzk_A 2 DVNECLDPTTCI-SGNCVN-TPGSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78 (162)
T ss_dssp CCCGGGSTTSSB-TSEEEE-ETTEEEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHHH
T ss_pred ccccCCCCCCCC-CCEeEC-CCCCEEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCceee
Confidence 578887 47886 689987 47889999999998 77887 6665 7642 34 35788998776 79999
Q ss_pred cCCCCC-CCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCC--CCcCC---cCcccCCCCCC--CCCCCCCEEeeCC
Q psy15407 461 CAPGFQ-GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTP--GFSGV---NCTVNVDDCVN--HMCQNGGTCVDGI 532 (604)
Q Consensus 461 C~~g~~-g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~--g~~g~---~c~~~~~~C~~--~~C~~~~~C~~~~ 532 (604)
|++||. |..|+. |.. +..++|+|.|++ ||+|. .+.+++|+|.. ++|.+ ++|+++.
T Consensus 79 C~~G~~~~~~C~~-----------C~~-----~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~-g~C~n~~ 141 (162)
T 1uzk_A 79 CSLGKAWGTPCEM-----------CPA-----VNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GKCINTF 141 (162)
T ss_dssp TTTCCEETTTTEE-----------CCC-----TTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBT-SEEEECS
T ss_pred CCCCCCcCCCccc-----------CCC-----CCCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCC-CEeEcCC
Confidence 999998 666641 221 234679999998 99986 34468999974 46985 7999999
Q ss_pred CCeEeeeCCCCccCC
Q psy15407 533 NDYTCKCEGDFVGKF 547 (604)
Q Consensus 533 ~~y~C~C~~G~~G~~ 547 (604)
|+|+|.|++||+|..
T Consensus 142 gsy~C~C~~Gy~g~~ 156 (162)
T 1uzk_A 142 GSFQCRCPTGYYLNE 156 (162)
T ss_dssp SCEEEECCTTCCBCT
T ss_pred CCEEeeCCCCccCCC
Confidence 999999999999864
No 134
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=99.57 E-value=1.6e-15 Score=134.01 Aligned_cols=65 Identities=29% Similarity=0.790 Sum_probs=55.8
Q ss_pred CCCCCCCCeeecCCCCceeeeCCCCCcC---------CCCcccCCCCCCC---CCCCCCeeeeCCCCceEeeCCCCCcCC
Q psy15407 363 KSPCTNQGVCEPLPERQYQCRCTPGYHG---------QHCEFMIDACYGN---PCRNSGTCKLLEEGRFNCECAPGYTGD 430 (604)
Q Consensus 363 ~~~C~~~g~C~~~~~~~~~C~C~~g~~G---------~~c~~~~~~C~~~---~C~~~~~C~~~~~~~~~C~C~~g~~g~ 430 (604)
+.+|.++++|++ .|+|.|++||+| ..|+ ++++|... +|.++++|++ ..++|.|.|++||+|.
T Consensus 6 ~~~C~~~~~C~~----~~~C~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n-~~g~y~C~C~~Gy~g~ 79 (143)
T 2bou_A 6 ARWCPQDSSCVN----ATACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWN-TEGSYDCVCSPGYEPV 79 (143)
T ss_dssp CTTCCTTEEESS----SSCEEECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEE-CSSCEEEEECTTEEET
T ss_pred cCcCCCCCEEcC----CCEEeCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEc-CCCCeEeECCCCcccC
Confidence 368999999985 399999999998 4785 89999986 8999999988 4789999999999998
Q ss_pred CCC
Q psy15407 431 RCE 433 (604)
Q Consensus 431 ~C~ 433 (604)
.++
T Consensus 80 ~~~ 82 (143)
T 2bou_A 80 SGA 82 (143)
T ss_dssp TCC
T ss_pred cCc
Confidence 554
No 135
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=99.57 E-value=2e-15 Score=156.59 Aligned_cols=190 Identities=22% Similarity=0.440 Sum_probs=124.7
Q ss_pred CCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeee--eC--------CCCceEeeCCCCCcCCCCCcCCCcCCCCCCC
Q psy15407 376 PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCK--LL--------EEGRFNCECAPGYTGDRCEINIDDCLSHKCE 445 (604)
Q Consensus 376 ~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~--~~--------~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~ 445 (604)
..|+|.|.|+.+|.+..++..+..+. +...+.+. .. ....+.|.|++||.|+.|+. .| .+|.
T Consensus 135 ~nGs~~~~~p~~~~~~~~~~~~~~~~---~~d~g~y~~~~~~g~~~~~~~~~~~~c~C~~g~~G~~C~~---~C--~~C~ 206 (423)
T 2gy5_A 135 KNGSFIHSVPRHEVPDILEVHLPHAQ---PQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNH---LC--TACM 206 (423)
T ss_dssp ETTEEEEEECGGGCCSEEEEEETTCC---GGGCEEEEEEETTCCGGGCEEEEEEECSSCTTEESTTSCE---EC--CCCC
T ss_pred cCCeEeeccCccccCCeEEeccCcCC---CCCCCeEeeEECCCcEeccccccccCCcCCCCCCCCCCCC---CC--CCCC
Confidence 34678899988888876653322111 11112111 00 11244689999999999973 45 3788
Q ss_pred CCcEEEeCCCCeEEecCCCCCCCCcccCC----------CcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCccc--
Q psy15407 446 NNATCVDLIQAYECRCAPGFQGEFCQTKT----------PFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVN-- 513 (604)
Q Consensus 446 ~~~~C~~~~~~~~C~C~~g~~g~~C~~~~----------~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~-- 513 (604)
++|+|.+ +.+.|.|++||.|..|+... +.|. ..+.|.+++.|. .++|+|.|++||+|..|+..
T Consensus 207 ~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~-~~~~C~~~g~C~--~~~~~C~C~~G~~G~~C~~~C~ 281 (423)
T 2gy5_A 207 NNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCS-GQEGCKSYVFCL--PDPYGCSCATGWKGLQCNEACH 281 (423)
T ss_dssp TTCEECT--TTCCEECCTTEESTTSCEECCTTEESTTSCEECC-STTTTTTCCEEE--TTTTEEECCBTCBSGGGCBCCC
T ss_pred CCCEEEC--CCCcEeCCCCccCCCcccccCCCCCCCCcCccCC-CCCCCCCCCEEC--CCCCeEEeCCCcccccccCccC
Confidence 9999976 45789999999999997531 1333 234677777784 46789999999999998741
Q ss_pred ----CCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCceeCCCCCCCeeeecC
Q psy15407 514 ----VDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCA 588 (604)
Q Consensus 514 ----~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~C~~~~g~~~~~C~C~ 588 (604)
-+.|. .-+|.++|+|.+.. .|.|++||+|.+|+.... ... ........ -.|.|.
T Consensus 282 ~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~~G~~Ce~~~~---------~~~-----~~~~~~~~----~~~~c~ 340 (423)
T 2gy5_A 282 PGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQGLQCEREGI---------PRM-----TPKIVDLP----DHIEVN 340 (423)
T ss_dssp TTBCSBTTCCBCCCTTCCEEETTT---EEECCTTCBSTTSCBCSS---------CCC-----CCEECSCC----SBCCEE
T ss_pred CCCcCCcccccccCCCCCEecCCC---ceECCCCCcCCCCccCcc---------CCc-----CcceecCC----CeEEeC
Confidence 12232 22788999998764 499999999999996411 000 11122222 258999
Q ss_pred CCCcCCCCCCC
Q psy15407 589 PGYSGKESLLQ 599 (604)
Q Consensus 589 ~G~~G~~C~~~ 599 (604)
+||.|..|+..
T Consensus 341 ~g~~g~~C~~~ 351 (423)
T 2gy5_A 341 SGKFNPICKAS 351 (423)
T ss_dssp SEEECCEEEEE
T ss_pred CCccCCccccc
Confidence 99999888754
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=3e-15 Score=164.15 Aligned_cols=78 Identities=26% Similarity=0.294 Sum_probs=69.2
Q ss_pred ccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeec
Q psy15407 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295 (604)
Q Consensus 216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 295 (604)
.+|+.|+|++|+|+.++ ..+++|+.|+|++|+|+.|+. .+++|+.|+|++|+|+.||. .|..+++|+.|+|
T Consensus 221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEe
Confidence 47899999999999887 356899999999999999866 56899999999999999986 4889999999999
Q ss_pred cCCCccc
Q psy15407 296 GGNPLYC 302 (604)
Q Consensus 296 ~~Npl~C 302 (604)
++|+|.-
T Consensus 292 ~~N~l~~ 298 (622)
T 3g06_A 292 EGNPLSE 298 (622)
T ss_dssp CSCCCCH
T ss_pred cCCCCCC
Confidence 9999974
No 137
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.57 E-value=8.6e-15 Score=160.22 Aligned_cols=189 Identities=18% Similarity=0.193 Sum_probs=134.7
Q ss_pred CeEEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCC--CcCCCcccCCcCCCCC
Q psy15407 97 TRVDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED--NAFEGENDQGCLGDNY 173 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~--~~f~~l~~L~~L~l~~ 173 (604)
+.|+++++.+..++. .-...+++|+|++|+|+.+.+. .|.++++|++|+|++|+|+.++. ..|..+++|+.|++++
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 455666666655442 2344566677777766664332 26666777777777776666543 4566666666666666
Q ss_pred CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcce
Q psy15407 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253 (604)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~ 253 (604)
|.+.. .++. ..+ .. ..+|++|+|++|+|+...+..+. ++|++|+|++|+|+
T Consensus 413 N~l~~----------------~~~~---------~~~-~~-l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 413 NSLNS----------------HAYD---------RTC-AW-AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp SCCBS----------------CCSS---------CCC-CC-CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred CcCCC----------------ccCh---------hhh-cC-cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 54321 0000 000 11 23899999999999865544433 69999999999999
Q ss_pred eeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCcccc-ccccc
Q psy15407 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSE-WVKRD 316 (604)
Q Consensus 254 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~-~~~~~ 316 (604)
.|++..+ .+++|++|+|++|+|+.||+..|..+++|+.|+|++|||.|+|.+.|+.+ |++..
T Consensus 464 ~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~ 526 (562)
T 3a79_B 464 SIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH 526 (562)
T ss_dssp CCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHT
T ss_pred ccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhc
Confidence 9977766 89999999999999999999889999999999999999999999999965 87543
No 138
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=99.56 E-value=7.1e-15 Score=152.54 Aligned_cols=180 Identities=24% Similarity=0.592 Sum_probs=122.2
Q ss_pred ceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCC----------cCC-CCCCCCC
Q psy15407 379 QYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINID----------DCL-SHKCENN 447 (604)
Q Consensus 379 ~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~----------~C~-~~~C~~~ 447 (604)
.+.|.|+.||.|..|+. .| .||.++|+|.. +.+.|.|++||+|..|+...+ +|. ..+|.++
T Consensus 184 ~~~c~C~~g~~G~~C~~---~C--~~C~~~G~C~~---~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~ 255 (423)
T 2gy5_A 184 LIVRRCEAQKWGPECNH---LC--TACMNNGVCHE---DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSY 255 (423)
T ss_dssp EEECSSCTTEESTTSCE---EC--CCCCTTCEECT---TTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTC
T ss_pred ccCCcCCCCCCCCCCCC---CC--CCCCCCCEEEC---CCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCC
Confidence 45799999999999985 35 37999999964 467899999999999985322 344 4568888
Q ss_pred cEEEeCCCCeEEecCCCCCCCCcccC------CCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCC
Q psy15407 448 ATCVDLIQAYECRCAPGFQGEFCQTK------TPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHM 521 (604)
Q Consensus 448 ~~C~~~~~~~~C~C~~g~~g~~C~~~------~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~ 521 (604)
+.|. .++|.|.|++||.|..|+.. .+.|.. .-+|.+++.|.+.. .|.|++||+|..|+.......
T Consensus 256 g~C~--~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~-~C~C~ngg~C~~~~---~C~C~~G~~G~~Ce~~~~~~~--- 326 (423)
T 2gy5_A 256 VFCL--PDPYGCSCATGWKGLQCNEACHPGFYGPDCKL-RCSCNNGEMCDRFQ---GCLCSPGWQGLQCEREGIPRM--- 326 (423)
T ss_dssp CEEE--TTTTEEECCBTCBSGGGCBCCCTTBCSBTTCC-BCCCTTCCEEETTT---EEECCTTCBSTTSCBCSSCCC---
T ss_pred CEEC--CCCCeEEeCCCcccccccCccCCCCcCCcccc-cccCCCCCEecCCC---ceECCCCCcCCCCccCccCCc---
Confidence 8995 56789999999999999741 122321 12688899998654 399999999999985432211
Q ss_pred CCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCce-eCCCCCCCeeeecCCCCcCCCC
Q psy15407 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGIC-FQPQGSNDYLCKCAPGYSGKES 596 (604)
Q Consensus 522 C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~C-~~~~g~~~~~C~C~~G~~G~~C 596 (604)
.....+.. + .|.|..||.|..|+.. .|... -..... ....| .|.++.+|.+...
T Consensus 327 ---~~~~~~~~-~-~~~c~~g~~g~~C~~~-----------~~~~~-~~~~~~~~~~~G----~cl~~~~~~~~d~ 381 (423)
T 2gy5_A 327 ---TPKIVDLP-D-HIEVNSGKFNPICKAS-----------GWPLP-TNEEMTLVKPDG----TVLHPKDFNHTDH 381 (423)
T ss_dssp ---CCEECSCC-S-BCCEESEEECCEEEEE-----------CTTCC-CGGGEEEECTTS----CEECCSEEEECSS
T ss_pred ---CcceecCC-C-eEEeCCCccCCccccc-----------CCcCC-CCceEEEECCCe----EEEeCCCcCcccc
Confidence 11222222 2 4899999999888742 12110 011122 33343 5889998877654
No 139
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=99.56 E-value=2.8e-15 Score=162.71 Aligned_cols=163 Identities=32% Similarity=0.708 Sum_probs=126.3
Q ss_pred cCCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCC---------CCCCC----CCCCCCeeeeCCCCceEeeCC----
Q psy15407 362 YKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID---------ACYGN----PCRNSGTCKLLEEGRFNCECA---- 424 (604)
Q Consensus 362 ~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~---------~C~~~----~C~~~~~C~~~~~~~~~C~C~---- 424 (604)
.+.+|.++|+|.. ..|.|++||+|..|+.+++ .|... +|.++|+|.. + .|.|.
T Consensus 433 ~s~~Cs~~G~C~~-----g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~---G--~C~C~~~~~ 502 (687)
T 3k6s_B 433 DRSLCHGKGFLEC-----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC---G--QCLCHTSDV 502 (687)
T ss_dssp CSSTGGGSEEESS-----SSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET---T--EEEECCCCS
T ss_pred CCCCCCCCCEEeC-----CEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC---C--EEEcCCCCC
Confidence 4567999999972 3899999999999996554 57654 4999999973 2 79999
Q ss_pred --CCCcCCCCCcCCCcCCC---CCCCC--CcEEEeCCCCeEEecCCCCCCCCccc--CCCcCCCC-CCCCCCCCceeecC
Q psy15407 425 --PGYTGDRCEINIDDCLS---HKCEN--NATCVDLIQAYECRCAPGFQGEFCQT--KTPFCAGE-YNPCRNGARCLDHF 494 (604)
Q Consensus 425 --~g~~g~~C~~~~~~C~~---~~C~~--~~~C~~~~~~~~C~C~~g~~g~~C~~--~~~~C~~~-~~~C~~~~~C~~~~ 494 (604)
+||.|..|+.+...|.. .+|.+ +|+|+. ..|.|.+||+|..|+. ..+.|... ...|.++|.|+.
T Consensus 503 ~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~----g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~-- 576 (687)
T 3k6s_B 503 PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC-- 576 (687)
T ss_dssp TTCCEESTTSCEESSCSCEETTEETSHHHHEEEET----TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS--
T ss_pred CCCCccccccccccccccCCCCcCcCCCCCCeEEC----CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC--
Confidence 99999999988888974 46988 899985 3799999999999983 34677642 347999999976
Q ss_pred CCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeee-CCCCccCCCCc
Q psy15407 495 SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC-EGDFVGKFCEI 550 (604)
Q Consensus 495 ~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C-~~G~~G~~C~~ 550 (604)
++|.|.+||+|..|+.. ..|. .+|.+++.|+ .|.| ..|..+..|+.
T Consensus 577 --g~C~C~~Gy~G~~Ce~c-~~C~-~~C~~~g~Cv------~C~~~~~G~~~~~C~~ 623 (687)
T 3k6s_B 577 --NVCECHSGYQLPLCQEC-PGCP-SPCGKYISCA------ECLKFEKGPFGKNCSA 623 (687)
T ss_dssp --SCBCCSTTCCTTTTCCC-TTSC-CCCTTTHHHH------TTTTSCSCCCSSCSSS
T ss_pred --CEEECCCCCcCCCCCCC-CCCC-cccCCCCCCC------cccCCCCCCCCccccc
Confidence 47999999999999852 3574 5899998887 2444 33555566653
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=2.3e-15 Score=168.96 Aligned_cols=173 Identities=15% Similarity=0.024 Sum_probs=106.0
Q ss_pred CCeEEcCCCCCCcCCCCCCcc-------CcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCc
Q psy15407 96 GTRVDCSQRGLKEIPKDIPLY-------TTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC 168 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l~~~-------~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 168 (604)
.+.|++.++++..+|..+... +..+++..|.+..+ + ..|..+++|+.|+|++|+|..|++..| .+.+|+.
T Consensus 175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~-~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~ 251 (727)
T 4b8c_D 175 TPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMP-K-DSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSC
T ss_pred cceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecC-h-hhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCE
Confidence 367888889988877654221 13334444444433 3 348999999999999999999988877 7899999
Q ss_pred CCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEec
Q psy15407 169 LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILS 248 (604)
Q Consensus 169 L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls 248 (604)
|+|++|.+..++. ....+ .+|++|+|++|+|+.|+ ..|..|++|++|+|+
T Consensus 252 L~Ls~N~l~~lp~----------------------------~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 252 LYLNGNSLTELPA----------------------------EIKNL-SNLRVLDLSHNRLTSLP-AELGSCFQLKYFYFF 301 (727)
T ss_dssp CBCTTSCCSCCCG----------------------------GGGGG-TTCCEEECTTSCCSSCC-SSGGGGTTCSEEECC
T ss_pred EEeeCCcCcccCh----------------------------hhhCC-CCCCEEeCcCCcCCccC-hhhcCCCCCCEEECC
Confidence 9999876432110 01111 38999999999999884 468899999999999
Q ss_pred CCcceeeeccccCCCCcccEEEccCCccccCCcccccCccc-ceeeeccCCCccc
Q psy15407 249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHA-ITHLAIGGNPLYC 302 (604)
Q Consensus 249 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~-L~~L~L~~Npl~C 302 (604)
+|.|+.|+. .|..|++|++|+|++|+|+.+++..|..+.. +..|+|++|.+.-
T Consensus 302 ~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 302 DNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp SSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 999998855 4999999999999999999877776655432 3347888998863
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=2.9e-15 Score=137.73 Aligned_cols=129 Identities=17% Similarity=0.142 Sum_probs=110.9
Q ss_pred CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
-+.|++++|+|+.+|.-. ...++.|+|++|.|+.+ .. |..+++|++|+|++|+|+.+++..|..++
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------- 88 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG--FPLLRRLKTLLVNNNRICRIGEGLDQALP--------- 88 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CC--CCCCSSCCEEECCSSCCCEECSCHHHHCT---------
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cc--cccCCCCCEEECCCCcccccCcchhhcCC---------
Confidence 368999999999997522 34789999999999999 32 99999999999999999999887776654
Q ss_pred CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccC-CCCCCCCCCCeEEecCCcc
Q psy15407 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYNKL 252 (604)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N~l 252 (604)
+|++|+|++|+|+.++. ..|..+++|+.|+|++|.|
T Consensus 89 -------------------------------------------~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 89 -------------------------------------------DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp -------------------------------------------TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred -------------------------------------------CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 78888999999988875 4788999999999999999
Q ss_pred eeeecc---ccCCCCcccEEEccCCccccC
Q psy15407 253 QCIDRD---ALAGLKSLRIISLHGNDISMI 279 (604)
Q Consensus 253 ~~i~~~---~f~~l~~L~~L~Ls~N~l~~i 279 (604)
..++.. .|..+++|+.|+++.|.+...
T Consensus 126 ~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 126 TNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp GGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 988554 588899999999999998753
No 142
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=99.55 E-value=9.4e-16 Score=130.22 Aligned_cols=102 Identities=30% Similarity=0.728 Sum_probs=82.0
Q ss_pred CCCcCCCCCCCCCcEEEeC-CCCeEEecCCCCCCCCcccCCCcCCC--CCCCCCCCCceeecCCCeEEecCCCCc---CC
Q psy15407 435 NIDDCLSHKCENNATCVDL-IQAYECRCAPGFQGEFCQTKTPFCAG--EYNPCRNGARCLDHFSHYTCECTPGFS---GV 508 (604)
Q Consensus 435 ~~~~C~~~~C~~~~~C~~~-~~~~~C~C~~g~~g~~C~~~~~~C~~--~~~~C~~~~~C~~~~~~~~C~C~~g~~---g~ 508 (604)
++++|...||.+ +|+++ .++|+|.|++||+|..+ ++++|.. ..++|. +.|++ .++|+|.|++||+ |.
T Consensus 3 dideC~~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~--~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g~ 75 (118)
T 1dx5_I 3 PVDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPH--EPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDDGF 75 (118)
T ss_dssp CCCGGGGCCCSS--EEEECSSSCEEEECCTTEEEETT--EEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEETTT
T ss_pred ccccCCCCCCCC--CCCCCCCCCEEeECCCCccccCC--CCCccccccCCCCCC--CcccC-CCCeEeECCCCccCCCCC
Confidence 678888888874 89998 88999999999988754 2333432 123454 67887 5889999999999 88
Q ss_pred cCcccCCCCCC-CCCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407 509 NCTVNVDDCVN-HMCQNGGTCVDGINDYTCKCEGDFVGK 546 (604)
Q Consensus 509 ~c~~~~~~C~~-~~C~~~~~C~~~~~~y~C~C~~G~~G~ 546 (604)
.| .++++|.. ++| +++|+++.++|+|.|++||+|.
T Consensus 76 ~C-~dideC~~~~~C--~~~C~n~~g~y~C~C~~G~~g~ 111 (118)
T 1dx5_I 76 IC-TDIDECENGGFC--SGVCHNLPGTFECICGPDSALA 111 (118)
T ss_dssp EE-EECCHHHHCSSC--SSEEEECSSSEEEEECSSSSCE
T ss_pred cc-ccccccCCCCCC--cCeEEeCCCCEEEECCCCCccC
Confidence 89 48999987 899 6899999999999999999865
No 143
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=2.3e-14 Score=152.50 Aligned_cols=138 Identities=26% Similarity=0.232 Sum_probs=118.8
Q ss_pred ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC 194 (604)
Q Consensus 115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~ 194 (604)
..+++|+|++|.|+.+.+. .|..+++|++|+|++|+|+.+.+.+|.++++|+.|+|++|.+..+.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------- 339 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-------------- 339 (455)
T ss_dssp SCCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------
T ss_pred cCceEEEecCccccccchh-hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--------------
Confidence 4679999999999998764 4999999999999999999999999999999999999987542110
Q ss_pred ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCC
Q psy15407 195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274 (604)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 274 (604)
....... .+|++|+|++|+|+.+.+..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus 340 -------------~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 340 -------------SRMFENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp -------------GGGGTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -------------hhHhcCc-ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 0001112 38999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCc
Q psy15407 275 DISMIPE 281 (604)
Q Consensus 275 ~l~~i~~ 281 (604)
+|+.-.+
T Consensus 406 ~l~~~~~ 412 (455)
T 3v47_A 406 PWDCSCP 412 (455)
T ss_dssp CBCCCTT
T ss_pred CcccCCC
Confidence 9986544
No 144
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=2.2e-15 Score=155.40 Aligned_cols=205 Identities=21% Similarity=0.236 Sum_probs=107.8
Q ss_pred CeEEcCCCCCCcCCC--------CCCccCcEEecCCCcceeecCCCccCCC-----CCCcEEeCCCCcceecCCCcCC--
Q psy15407 97 TRVDCSQRGLKEIPK--------DIPLYTTELILNDNEIGKIKSDGLFGRL-----PNLIKLDLRRNQVTGIEDNAFE-- 161 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~--------~l~~~~~~L~L~~N~i~~i~~~~~f~~l-----~~L~~L~Ls~N~i~~i~~~~f~-- 161 (604)
+.|++++|.|+.++. .++..+++|+|++|.|+.+... .|..+ ++|++|+|++|+|+...+..|.
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 566666666666553 1223566666666666554332 13332 6666666666666655544322
Q ss_pred --Cc-ccCCcCCCCCCCCCcc-------------ccccEEEccCCccc--------------------cccccccceeee
Q psy15407 162 --GE-NDQGCLGDNYCPPKCT-------------CTVRVLFYDGRAGE--------------------CYIAVELFSSRI 205 (604)
Q Consensus 162 --~l-~~L~~L~l~~~~~~~~-------------~~l~~l~~~~~~~~--------------------~~~~~~~~~~~~ 205 (604)
.+ .+|+.|+|++|.+... ..++.+.+..+... +.+..+.+....
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 22 5666666666643221 23444444433222 111111110000
Q ss_pred --eeccccCCccccceeecCCCCceee-----ccCCCCCC-CCCCCeEEecCCcceeeec----cccCCCCcccEEEccC
Q psy15407 206 --RVSYYVGNYPVSTMYRDLSNNQIGF-----LSNFTFSP-LSKLSQLILSYNKLQCIDR----DALAGLKSLRIISLHG 273 (604)
Q Consensus 206 --~~~~~~~~~~~~L~~L~Ls~N~i~~-----l~~~~f~~-l~~L~~L~Ls~N~l~~i~~----~~f~~l~~L~~L~Ls~ 273 (604)
.+.......+.+|++|+|++|.|+. ++. .|.. .++|++|+|++|+|+.+.. ..+..+++|++|+|++
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 0000011111367777777777766 332 2322 3477777777777776544 3356667777777777
Q ss_pred CccccCCcc-------cccCcccceeeeccCCCcccc
Q psy15407 274 NDISMIPEG-------AFADLHAITHLAIGGNPLYCD 303 (604)
Q Consensus 274 N~l~~i~~~-------~f~~l~~L~~L~L~~Npl~Cd 303 (604)
|.|..+.+. .|..+++|+.|+|++|++.-.
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 775555432 456677788888888877644
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=1.9e-14 Score=134.24 Aligned_cols=107 Identities=24% Similarity=0.340 Sum_probs=87.3
Q ss_pred CCCeEEcCCCCCCcCCCC--C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407 95 DGTRVDCSQRGLKEIPKD--I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG 170 (604)
Q Consensus 95 ~~~~l~cs~~~L~~iP~~--l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 170 (604)
.-+.|++++|.|+.+|.. + ...+++|+|++|+|+.+.+. .|.++++|++|+|++|+|+.+++.+|.+++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 102 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNKMFLGLH------ 102 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcCCccCHHHhcCCC------
Confidence 357899999999999864 3 46789999999999999764 499999999999999999999888887654
Q ss_pred CCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCC
Q psy15407 171 DNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYN 250 (604)
Q Consensus 171 l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N 250 (604)
+|++|+|++|+|+.+.+..|..+++|++|+|++|
T Consensus 103 ----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 103 ----------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ----------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred ----------------------------------------------CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 6667777777777777777777777777777777
Q ss_pred ccee
Q psy15407 251 KLQC 254 (604)
Q Consensus 251 ~l~~ 254 (604)
.+..
T Consensus 137 ~l~c 140 (192)
T 1w8a_A 137 PFNC 140 (192)
T ss_dssp CBCC
T ss_pred CccC
Confidence 7664
No 146
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=2.8e-16 Score=163.59 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=66.7
Q ss_pred cceeecCCCCcee----eccCCCCCCCCCCCeEEecCCcceee----ecccc--CCCCcccEEEccCCcccc-----CCc
Q psy15407 217 STMYRDLSNNQIG----FLSNFTFSPLSKLSQLILSYNKLQCI----DRDAL--AGLKSLRIISLHGNDISM-----IPE 281 (604)
Q Consensus 217 ~L~~L~Ls~N~i~----~l~~~~f~~l~~L~~L~Ls~N~l~~i----~~~~f--~~l~~L~~L~Ls~N~l~~-----i~~ 281 (604)
+|++|+|++|.|+ ...+..|..+++|++|+|++|+|+.. .+.++ ..+++|+.|+|++|.|+. ++.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 7888899999884 22233677888899999999988775 23444 337889999999999887 766
Q ss_pred ccccCcccceeeeccCCCccccc
Q psy15407 282 GAFADLHAITHLAIGGNPLYCDC 304 (604)
Q Consensus 282 ~~f~~l~~L~~L~L~~Npl~CdC 304 (604)
..+..+++|+.|+|++|++.-..
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhcCCCceEEEccCCcCCcch
Confidence 55567888999999999887554
No 147
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=9.5e-15 Score=130.20 Aligned_cols=123 Identities=19% Similarity=0.083 Sum_probs=105.0
Q ss_pred CCeEEcCCCCCC--cCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCC
Q psy15407 96 GTRVDCSQRGLK--EIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD 171 (604)
Q Consensus 96 ~~~l~cs~~~L~--~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l 171 (604)
-+.|+++++.++ .+|..+ ...+++|+|++|.|+.+ . .|..+++|++|+|++|+|+.+.+..|..++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------- 88 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-A--NLPKLNKLKKLELSDNRVSGGLEVLAEKCP------- 88 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-T--TCCCCTTCCEEECCSSCCCSCTHHHHHHCT-------
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-h--hhhcCCCCCEEECCCCcccchHHHHhhhCC-------
Confidence 478999999999 888765 35789999999999998 3 399999999999999999985555554443
Q ss_pred CCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeecc-CCCCCCCCCCCeEEecCC
Q psy15407 172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS-NFTFSPLSKLSQLILSYN 250 (604)
Q Consensus 172 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~Ls~N 250 (604)
+|++|+|++|+|+.++ +..|..+++|++|+|++|
T Consensus 89 ---------------------------------------------~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 89 ---------------------------------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp ---------------------------------------------TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred ---------------------------------------------CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 7889999999999875 367899999999999999
Q ss_pred cceeeec---cccCCCCcccEEEccC
Q psy15407 251 KLQCIDR---DALAGLKSLRIISLHG 273 (604)
Q Consensus 251 ~l~~i~~---~~f~~l~~L~~L~Ls~ 273 (604)
+|+.+++ ..|..+++|+.|++++
T Consensus 124 ~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 124 EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cccchHHHHHHHHHHCCCcccccCCC
Confidence 9999977 6789999999999874
No 148
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=99.49 E-value=2.3e-14 Score=115.20 Aligned_cols=86 Identities=24% Similarity=0.599 Sum_probs=64.1
Q ss_pred ceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCC-cCCCcCCCCCCCCCcEEEeCC--C
Q psy15407 379 QYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE-INIDDCLSHKCENNATCVDLI--Q 455 (604)
Q Consensus 379 ~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~-~~~~~C~~~~C~~~~~C~~~~--~ 455 (604)
+|+|.|.+||+|..|+ +++|...||.+. .+.|.|.|++||+ .|+ .++++|...||.++|+|++.. +
T Consensus 1 sy~C~C~~g~~g~~c~--~~~c~~~pC~n~-------~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~ 69 (91)
T 1tpg_A 1 SYQVICRDEKTQMIYQ--QHQSWLRPVLRS-------NRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFS 69 (91)
T ss_dssp CCCCCCBCSSSCCBCC--SSCEEEEECSSS-------SCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSS
T ss_pred CeeeECCCCCcCCeEC--CCcccCCccccC-------CCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCC
Confidence 3678888888888774 567766666542 4677888888887 776 567888888888888888766 7
Q ss_pred CeEEecCCCCCCCCcccCCC
Q psy15407 456 AYECRCAPGFQGEFCQTKTP 475 (604)
Q Consensus 456 ~~~C~C~~g~~g~~C~~~~~ 475 (604)
+|.|.|++||+|..|+.+++
T Consensus 70 ~~~C~C~~G~~G~~Ce~~id 89 (91)
T 1tpg_A 70 DFVCQCPEGFAGKSCEIDTR 89 (91)
T ss_dssp CEEEECCTTCBSSSCCBCSS
T ss_pred CeEeECCCCCcCCcCCcCCC
Confidence 78888888888888876554
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=7.6e-14 Score=130.14 Aligned_cols=106 Identities=26% Similarity=0.370 Sum_probs=87.7
Q ss_pred CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~ 173 (604)
-+.|++++|.|+.||..+ ...+++|+|++|.|+.+++. .|.+|++|++|+|++|+|+.+++.+|.+++
T Consensus 33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~--------- 102 (193)
T 2wfh_A 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLK--------- 102 (193)
T ss_dssp CCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCT---------
T ss_pred CCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccCEeCHHHhCCCC---------
Confidence 478999999999999766 35789999999999999874 599999999999999999999988887764
Q ss_pred CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcce
Q psy15407 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253 (604)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~ 253 (604)
+|++|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus 103 -------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 103 -------------------------------------------SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -------------------------------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -------------------------------------------CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6667777777777777777777777777777777665
Q ss_pred e
Q psy15407 254 C 254 (604)
Q Consensus 254 ~ 254 (604)
.
T Consensus 140 C 140 (193)
T 2wfh_A 140 C 140 (193)
T ss_dssp C
T ss_pred c
Confidence 4
No 150
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=1.4e-16 Score=173.46 Aligned_cols=177 Identities=16% Similarity=0.091 Sum_probs=126.4
Q ss_pred CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCc-------------ceecCCCcCCCcccCCcCC-CCCCCCCcc
Q psy15407 114 PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ-------------VTGIEDNAFEGENDQGCLG-DNYCPPKCT 179 (604)
Q Consensus 114 ~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~-------------i~~i~~~~f~~l~~L~~L~-l~~~~~~~~ 179 (604)
...++.|+|++|+|+.||.. ++.+++|+.|+|++|. +....+..|..+.+|+.|+ ++.+.+..+
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~--i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSE--LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHH--HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred CccceeccCChhhHHhhHHH--HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34567899999999999865 8899999999998775 4445566777777887777 443311111
Q ss_pred ccccEEEcc---------CCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCC
Q psy15407 180 CTVRVLFYD---------GRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYN 250 (604)
Q Consensus 180 ~~l~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N 250 (604)
. .+.+. ..+..+.+..+.+.... . .+.+ .+|+.|+|++|+|+.++. .|..+++|+.|+|++|
T Consensus 426 ~---~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp---~-~~~l-~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 426 R---SKFLLENSVLKMEYADVRVLHLAHKDLTVLC---H-LEQL-LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN 496 (567)
T ss_dssp H---HHHHHHHHHHHHHHTTCSEEECTTSCCSSCC---C-GGGG-TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSS
T ss_pred h---hhhhhcccccccCccCceEEEecCCCCCCCc---C-cccc-ccCcEeecCcccccccch-hhhcCCCCCEEECCCC
Confidence 1 00000 01112222222222211 1 1222 389999999999998865 7899999999999999
Q ss_pred cceeeeccccCCCCcccEEEccCCccccCC-cccccCcccceeeeccCCCcccc
Q psy15407 251 KLQCIDRDALAGLKSLRIISLHGNDISMIP-EGAFADLHAITHLAIGGNPLYCD 303 (604)
Q Consensus 251 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~Npl~Cd 303 (604)
+|+.|+ .|..+++|+.|+|++|+|+.++ +..|..+++|+.|+|++|++.-.
T Consensus 497 ~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 497 ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 999985 7899999999999999999996 66789999999999999998643
No 151
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=5.5e-16 Score=159.91 Aligned_cols=195 Identities=18% Similarity=0.148 Sum_probs=120.3
Q ss_pred EEcCCCCCCc-CCCC--CCccCcEEecCCCcceeecCC---CccCCCC-CCcEEeCCCCcceecCCCcCCCc-----ccC
Q psy15407 99 VDCSQRGLKE-IPKD--IPLYTTELILNDNEIGKIKSD---GLFGRLP-NLIKLDLRRNQVTGIEDNAFEGE-----NDQ 166 (604)
Q Consensus 99 l~cs~~~L~~-iP~~--l~~~~~~L~L~~N~i~~i~~~---~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~l-----~~L 166 (604)
++++.++++. +|.. .+..+++|+|++|.|+.++.. ..|..++ +|++|+|++|+|+.+.+..|..+ .+|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5678888884 4432 366799999999999988641 2378898 99999999999999888777776 899
Q ss_pred CcCCCCCCCCCcc-------------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccC
Q psy15407 167 GCLGDNYCPPKCT-------------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233 (604)
Q Consensus 167 ~~L~l~~~~~~~~-------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~ 233 (604)
+.|+|++|.+... ..++.+.+..+........ .+.......+.+|++|+|++|+|+....
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-------EFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-------HHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-------HHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 9999999975421 3455555544432111100 0000011112366777777777663222
Q ss_pred C----CCCCCC-CCCeEEecCCcceeeecccc----CCC-CcccEEEccCCcccc-----CCcccccC-cccceeeeccC
Q psy15407 234 F----TFSPLS-KLSQLILSYNKLQCIDRDAL----AGL-KSLRIISLHGNDISM-----IPEGAFAD-LHAITHLAIGG 297 (604)
Q Consensus 234 ~----~f~~l~-~L~~L~Ls~N~l~~i~~~~f----~~l-~~L~~L~Ls~N~l~~-----i~~~~f~~-l~~L~~L~L~~ 297 (604)
. .+..++ +|++|+|++|+|+...+..| ..+ ++|++|+|++|.|+. ++.. |.. .++|++|+|++
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-FSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHHSCTTCCEEECCS
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH-HhcCCCCceEEECcC
Confidence 1 223333 67777777777766554332 333 467777777777765 3322 222 34677777777
Q ss_pred CCcc
Q psy15407 298 NPLY 301 (604)
Q Consensus 298 Npl~ 301 (604)
|++.
T Consensus 235 N~l~ 238 (362)
T 3goz_A 235 NCLH 238 (362)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=5.9e-15 Score=165.56 Aligned_cols=159 Identities=16% Similarity=0.047 Sum_probs=106.0
Q ss_pred cCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCc
Q psy15407 101 CSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC 178 (604)
Q Consensus 101 cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~ 178 (604)
.+.+.+...|..+ ...++.|+|++|.|..|+.. +..|++|++|+|++|+|+.|+ ..|..|.+|+.|+|++|.+..
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN--IFKYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCSCCCGG--GGGCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSS
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCCCCChh--hcCCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCc
Confidence 3334444334433 35678999999999988764 458999999999999999775 568889999999888876432
Q ss_pred cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeecc
Q psy15407 179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD 258 (604)
Q Consensus 179 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 258 (604)
++. ..+.+ .+|++|+|++|.|+.|+.. |..|++|++|+|++|+|+.+.+.
T Consensus 285 lp~----------------------------~~~~l-~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 285 LPA----------------------------ELGSC-FQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CCS----------------------------SGGGG-TTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHH
T ss_pred cCh----------------------------hhcCC-CCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChH
Confidence 111 00111 3899999999999999775 99999999999999999998888
Q ss_pred ccCCCCc-ccEEEccCCccccCCcccccCcccceeeeccCC
Q psy15407 259 ALAGLKS-LRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298 (604)
Q Consensus 259 ~f~~l~~-L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 298 (604)
.|..+.. +..|+|++|.++...+. .|..|+|+.|
T Consensus 335 ~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 335 ILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred HHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 7765432 34578999999865543 3555666666
No 153
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=3.8e-14 Score=154.24 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=99.4
Q ss_pred CCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCcccccee
Q psy15407 141 NLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220 (604)
Q Consensus 141 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 220 (604)
.|+.|+|++|+|+.|+. |..+.+|+.|+|++|.+..++. ..+.+ .+|+.
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~----------------------------~~~~l-~~L~~ 490 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP----------------------------ALAAL-RCLEV 490 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG----------------------------GGGGC-TTCCE
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch----------------------------hhhcC-CCCCE
Confidence 48889999999998864 8888888888888776432110 01111 38999
Q ss_pred ecCCCCceeeccCCCCCCCCCCCeEEecCCcceeee-ccccCCCCcccEEEccCCccccCCccc---ccCcccceeeec
Q psy15407 221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRIISLHGNDISMIPEGA---FADLHAITHLAI 295 (604)
Q Consensus 221 L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~---f~~l~~L~~L~L 295 (604)
|+|++|+|+.++ .|..+++|+.|+|++|+|+.+. |..|..+++|+.|+|++|+|+.+++.. +..+++|+.|+|
T Consensus 491 L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 491 LQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999987 7999999999999999999997 889999999999999999999998743 344788888864
No 154
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=99.47 E-value=1.4e-14 Score=156.22 Aligned_cols=212 Identities=21% Similarity=0.431 Sum_probs=86.4
Q ss_pred CceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCC--
Q psy15407 378 RQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQ-- 455 (604)
Q Consensus 378 ~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~-- 455 (604)
..+.|.|+.||+|..|+..++.+...|+.. ++|.. ....+.|.|.. .+..|+.+...+...++.+++.|.+-..
T Consensus 277 ~~g~C~C~~G~~G~~Ce~C~~g~~~~p~~~-~~c~~-~~~~~~C~C~~--~~~~C~~d~~~c~~~~~~~gg~C~~C~~g~ 352 (525)
T 4aqs_A 277 VHGHCMCRHNTKGLNCELCMDFYHDLPWRP-AEGRN-SNACKKCNCNE--HSSSCHFDMAVFLATGNVSGGVCDNCQHNT 352 (525)
T ss_dssp CCCEECCCTTEESSSSCEECTTCCSSCCCC-CBTTB-CCCCCCCCCTT--SCSEEEECHHHHHHTTSSCCEEEESCCTTE
T ss_pred cCccccCcCCCcCCCCcCCCCccCCCccCC-CcccC-CCcccccccCC--CCCCCCCCcccccccCccCCCcccCCCCCC
Confidence 357999999999999998888888777643 23322 12233344432 2334443333333333334444421111
Q ss_pred -------------------------CeEEecCCCCC--CCCcccCCCcCCCCCCCCCCCCceeecCCCeEE-ecCCCCcC
Q psy15407 456 -------------------------AYECRCAPGFQ--GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTC-ECTPGFSG 507 (604)
Q Consensus 456 -------------------------~~~C~C~~g~~--g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C-~C~~g~~g 507 (604)
...|.|...+. +..|........ ..+.....|.....+++| .|.+||.|
T Consensus 353 ~G~~Ce~C~~g~~~~~~~~~~~~~~~~~C~C~~~~~~~~~~C~~~~~~~~---~~~~~~C~C~~g~~G~~C~~C~~Gy~G 429 (525)
T 4aqs_A 353 MGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSV---GLIAGQCRCKLHVEGERCDVCKEGFYD 429 (525)
T ss_dssp ESTTSCEECTTEEECSSSCTTCTTCEEECCCCTTTBSGGGCCCCSCBGGG---TBCSSCCCBCTTEETTTTCEECTTEEC
T ss_pred CCCCcccccCcccccCCCCCCCCCCCcCCCCCCCCCCCCccccCCCCCCc---CCCCCccCCCCCCCCCcccCCCCCCcC
Confidence 11223322221 111211100000 001111133333344556 58888887
Q ss_pred CcCcccCCCCCCCCCCCCCEEeeC----CCCeEeeeCCCCccCCCCcCcccccCC-CCCCCCCCCCCCCCc-eeCCCCCC
Q psy15407 508 VNCTVNVDDCVNHMCQNGGTCVDG----INDYTCKCEGDFVGKFCEIAPFVAMMY-PQTSPCQHHDCKNGI-CFQPQGSN 581 (604)
Q Consensus 508 ~~c~~~~~~C~~~~C~~~~~C~~~----~~~y~C~C~~G~~G~~C~~~~~~~~~~-~~~~~C~~~~C~~g~-C~~~~g~~ 581 (604)
..|. ..+.|...+|..+++|.+. ..+++|.|++||.|..|+.+..+.... ...+.|....|.+++ |...-...
T Consensus 430 ~~c~-~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~ 508 (525)
T 4aqs_A 430 LSAE-DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSED 508 (525)
T ss_dssp CCTT-STTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC---------------------------------
T ss_pred CCCC-CCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCC
Confidence 7775 4556766677776666442 235689999999999998754332211 224568777787765 44332123
Q ss_pred CeeeecCCCCcCCCCC
Q psy15407 582 DYLCKCAPGYSGKESL 597 (604)
Q Consensus 582 ~~~C~C~~G~~G~~C~ 597 (604)
+++|.|++||+|++||
T Consensus 509 tG~C~C~~G~~G~~Ce 524 (525)
T 4aqs_A 509 SGQCSCLPHMIGRQCN 524 (525)
T ss_dssp ----------------
T ss_pred CCeeECCCCCcCCCCC
Confidence 4579999999999997
No 155
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=4.1e-15 Score=151.57 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=43.0
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCccee--ecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGK--IKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~--i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
+.++++++.++.++..+ ...+++|+|++|.|+. ++. +|..+++|++|+|++|.|+...+..|..+++|+.|+++
T Consensus 73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH--HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 45566666655544433 2445666666666543 322 25666666666666666655445555556666666666
Q ss_pred CC
Q psy15407 173 YC 174 (604)
Q Consensus 173 ~~ 174 (604)
+|
T Consensus 151 ~~ 152 (336)
T 2ast_B 151 GC 152 (336)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=7.1e-13 Score=134.61 Aligned_cols=183 Identities=15% Similarity=0.084 Sum_probs=130.8
Q ss_pred CeEEcCCCCCCcCCCCCC---ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCc----ceecCCCcCCCcccCC-c
Q psy15407 97 TRVDCSQRGLKEIPKDIP---LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ----VTGIEDNAFEGENDQG-C 168 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l~---~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~----i~~i~~~~f~~l~~L~-~ 168 (604)
+.|++.+ +++.|+...+ ..+++|+|++|.|..|++ .+|....+|..|.+..+. +..+...+|.+...|+ .
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP-EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECT-TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccch-hhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 7889988 8999988754 467999999999999987 458888888888777643 3446666665544444 1
Q ss_pred CC-------------------------CCCCC----CC----ccccccEEEccCCccccccccccceeeeeeccccCCcc
Q psy15407 169 LG-------------------------DNYCP----PK----CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYP 215 (604)
Q Consensus 169 L~-------------------------l~~~~----~~----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (604)
+. +...- +. ....++.+.+..+. +.. +....|.+ .
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~---------i~~-I~~~aF~~--~ 249 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN---------ATT-IPDFTFAQ--K 249 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC---------CCE-ECTTTTTT--C
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC---------cce-ecHhhhhC--C
Confidence 11 11000 00 01233333333221 111 11111111 2
Q ss_pred ccceeecCCCCceeeccCCCCCCCCCCC-eEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeee
Q psy15407 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLS-QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLA 294 (604)
Q Consensus 216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~-~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 294 (604)
.+|+.|+|++| |+.|+..+|.++.+|+ .|+|.+ +|+.|.+.+|.++++|+.|+|+.|+|+.|+..+|..+++|+.|+
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 38999999998 9999999999999999 999999 89999999999999999999999999999999999999999886
Q ss_pred c
Q psy15407 295 I 295 (604)
Q Consensus 295 L 295 (604)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 157
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=99.43 E-value=1e-13 Score=111.40 Aligned_cols=56 Identities=39% Similarity=0.900 Sum_probs=31.2
Q ss_pred cCCCeEEecCCCCcCCcCc-ccCCCCCCCCCCCCCEEeeCC--CCeEeeeCCCCccCCCCc
Q psy15407 493 HFSHYTCECTPGFSGVNCT-VNVDDCVNHMCQNGGTCVDGI--NDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 493 ~~~~~~C~C~~g~~g~~c~-~~~~~C~~~~C~~~~~C~~~~--~~y~C~C~~G~~G~~C~~ 550 (604)
..++|+|.|++||+ .|+ .++++|..+||.++|+|++.. ++|+|.|++||+|.+|+.
T Consensus 28 ~~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~ 86 (91)
T 1tpg_A 28 SNRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86 (91)
T ss_dssp SSCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCB
T ss_pred CCCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECCCCCcCCcCCc
Confidence 34455555555555 554 455555555555555555544 555555555555555553
No 158
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=99.43 E-value=5.1e-15 Score=131.37 Aligned_cols=131 Identities=27% Similarity=0.604 Sum_probs=92.4
Q ss_pred cccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccC
Q psy15407 394 EFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTK 473 (604)
Q Consensus 394 ~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~ 473 (604)
+.++|+|..+||.+ ++|++ ..++|.|.|++||+|..+. .+|++... ..|..+|.|..|+..
T Consensus 1 ~~dideC~~~pC~n-g~C~n-~~g~y~C~C~~G~~g~~~~--------------~~C~~~~~---~~C~~~~~g~~C~~~ 61 (147)
T 2w86_A 1 SADIDECESSPCIN-GVCKN-SPGSFICECSSESTLDPTK--------------TICIETIK---GTCWQTVIDGRCEIN 61 (147)
T ss_dssp CCCCCGGGGCCSBT-SEEEE-ETTEEEEECCTTEEECTTS--------------SBEEECCC---EEEEEEEETTEEEEE
T ss_pred CCcCccCcCCCCCC-CEeEC-CCCCEEeECCCCcccCCCC--------------CeecCCCC---CcccCCCCCCccccC
Confidence 35789999999985 79987 4789999999999987653 34544322 356667777777765
Q ss_pred CCcCCCCC-----CCCCCCCceeecCCCeEEecCCCCc---CCcCcccCCCCCC--CCCCCCCEEeeCCCCeEeeeCCCC
Q psy15407 474 TPFCAGEY-----NPCRNGARCLDHFSHYTCECTPGFS---GVNCTVNVDDCVN--HMCQNGGTCVDGINDYTCKCEGDF 543 (604)
Q Consensus 474 ~~~C~~~~-----~~C~~~~~C~~~~~~~~C~C~~g~~---g~~c~~~~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~ 543 (604)
++.|.... .....++.|.. -.|.|.|++||+ |..|+ ++++|.. ++|.+ ++|+++.++|+|.|++||
T Consensus 62 ~~~c~~~~~C~~~~g~~~g~~C~~--c~~~C~C~~Gy~~~~g~~C~-dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy 137 (147)
T 2w86_A 62 INGATLKSQCCSSLGAAWGSPCTL--CQVDPICGKGYSRIKGTQCE-DIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGM 137 (147)
T ss_dssp EEEEECHHHHHTTTCSEETTTTEE--CCCCTTTCTTEEEEETTEEE-ECCHHHHSTTCSSS-SEEEEETTEEEEECCTTC
T ss_pred CCccccCCccccCcCcccCCCccc--CCCcccCCCccccCCCCccC-ccccccCCCCCCCC-CEEECCCCCEEeeCCCCC
Confidence 55443110 00001122321 237889999995 89997 8999974 45986 599999999999999999
Q ss_pred ccCC
Q psy15407 544 VGKF 547 (604)
Q Consensus 544 ~G~~ 547 (604)
+|..
T Consensus 138 ~g~~ 141 (147)
T 2w86_A 138 TLDA 141 (147)
T ss_dssp CBCT
T ss_pred ccCC
Confidence 9764
No 159
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=3.6e-13 Score=123.67 Aligned_cols=85 Identities=31% Similarity=0.493 Sum_probs=79.1
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 296 (604)
+|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 67778888888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q psy15407 297 GNPLY 301 (604)
Q Consensus 297 ~Npl~ 301 (604)
+|.+.
T Consensus 109 ~N~l~ 113 (177)
T 2o6r_A 109 TNQLK 113 (177)
T ss_dssp SSCCS
T ss_pred CCcce
Confidence 99986
No 160
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=99.42 E-value=2.2e-14 Score=121.77 Aligned_cols=102 Identities=22% Similarity=0.610 Sum_probs=79.7
Q ss_pred CCCcCCCCCCCCCCCCceeec-CCCeEEecCCCCcCCcCccc--CCCCCCCCCCCCCEEeeCCCCeEeeeCCCCc---cC
Q psy15407 473 KTPFCAGEYNPCRNGARCLDH-FSHYTCECTPGFSGVNCTVN--VDDCVNHMCQNGGTCVDGINDYTCKCEGDFV---GK 546 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~-~~~~~C~C~~g~~g~~c~~~--~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~---G~ 546 (604)
++++|. .++|.+ +|++. .++|+|.|++||+|..+..+ .++|..++|. +.|++ .++|+|.|++||+ |.
T Consensus 3 dideC~--~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g~ 75 (118)
T 1dx5_I 3 PVDPCF--RANCEY--QCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDDGF 75 (118)
T ss_dssp CCCGGG--GCCCSS--EEEECSSSCEEEECCTTEEEETTEEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEETTT
T ss_pred ccccCC--CCCCCC--CCCCCCCCCEEeECCCCccccCCCCCccccccCCCCCC--CcccC-CCCeEeECCCCccCCCCC
Confidence 567885 368974 99999 89999999999998854211 1234455665 68988 5899999999999 77
Q ss_pred CCCcCcccccCCCCCCCCCC-CCCCCCceeCCCCCCCeeeecCCCCcCC
Q psy15407 547 FCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSNDYLCKCAPGYSGK 594 (604)
Q Consensus 547 ~C~~~~~~~~~~~~~~~C~~-~~C~~g~C~~~~g~~~~~C~C~~G~~G~ 594 (604)
.|+. +++|.. +.| ++.|+++. ++|+|.|++||+|.
T Consensus 76 ~C~d----------ideC~~~~~C-~~~C~n~~--g~y~C~C~~G~~g~ 111 (118)
T 1dx5_I 76 ICTD----------IDECENGGFC-SGVCHNLP--GTFECICGPDSALA 111 (118)
T ss_dssp EEEE----------CCHHHHCSSC-SSEEEECS--SSEEEEECSSSSCE
T ss_pred cccc----------ccccCCCCCC-cCeEEeCC--CCEEEECCCCCccC
Confidence 7853 567765 678 66699998 78999999999875
No 161
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.2e-15 Score=143.23 Aligned_cols=61 Identities=33% Similarity=0.276 Sum_probs=31.5
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEccCCccccC
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMI 279 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i 279 (604)
+|++|+|++|+|+.++ .|..+++|++|+|++|+|+.++. ..|..+++|++|+|++|.|+..
T Consensus 94 ~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 94 TLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 4555555555555544 24445555555555555555433 3445555555555555555433
No 162
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=1.2e-14 Score=151.15 Aligned_cols=198 Identities=15% Similarity=0.018 Sum_probs=132.2
Q ss_pred CeEEcCCCCCCc-----CCCCC--CccCcEEecCCCcceeecC---CC------ccCCCCCCcEEeCCCCccee----cC
Q psy15407 97 TRVDCSQRGLKE-----IPKDI--PLYTTELILNDNEIGKIKS---DG------LFGRLPNLIKLDLRRNQVTG----IE 156 (604)
Q Consensus 97 ~~l~cs~~~L~~-----iP~~l--~~~~~~L~L~~N~i~~i~~---~~------~f~~l~~L~~L~Ls~N~i~~----i~ 156 (604)
+.|+++++.|+. |+..+ ...+++|+|++|.+..+.. .+ .|..+++|++|+|++|.|+. ..
T Consensus 35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 114 (386)
T 2ca6_A 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114 (386)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence 788999988875 22223 3567899999876654421 11 14688999999999999887 23
Q ss_pred CCcCCCcccCCcCCCCCCCCCcc---------------------ccccEEEccCCccccccccccceeeeeeccccCCcc
Q psy15407 157 DNAFEGENDQGCLGDNYCPPKCT---------------------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYP 215 (604)
Q Consensus 157 ~~~f~~l~~L~~L~l~~~~~~~~---------------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (604)
+..|..+++|+.|+|++|.+... ..++.+.+..+...-. ....+.......
T Consensus 115 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~~- 186 (386)
T 2ca6_A 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-------SMKEWAKTFQSH- 186 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-------GHHHHHHHHHHC-
T ss_pred HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-------HHHHHHHHHHhC-
Confidence 44677788899999998875311 2344444433321100 000000111111
Q ss_pred ccceeecCCCCceee-----ccCCCCCCCCCCCeEEecCCcce----eeeccccCCCCcccEEEccCCccccCC----cc
Q psy15407 216 VSTMYRDLSNNQIGF-----LSNFTFSPLSKLSQLILSYNKLQ----CIDRDALAGLKSLRIISLHGNDISMIP----EG 282 (604)
Q Consensus 216 ~~L~~L~Ls~N~i~~-----l~~~~f~~l~~L~~L~Ls~N~l~----~i~~~~f~~l~~L~~L~Ls~N~l~~i~----~~ 282 (604)
.+|++|+|++|+|+. +.+..|..+++|+.|+|++|+|+ ...+..|..+++|+.|+|++|+|+... +.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 289999999999983 34447788999999999999994 323557888999999999999998652 22
Q ss_pred cc--cCcccceeeeccCCCccc
Q psy15407 283 AF--ADLHAITHLAIGGNPLYC 302 (604)
Q Consensus 283 ~f--~~l~~L~~L~L~~Npl~C 302 (604)
.+ ..+++|+.|+|++|++.-
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBH
T ss_pred HHhhccCCCeEEEECcCCcCCH
Confidence 34 338889999999998764
No 163
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=3e-15 Score=140.40 Aligned_cols=122 Identities=26% Similarity=0.400 Sum_probs=103.5
Q ss_pred cceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceeee
Q psy15407 126 EIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI 205 (604)
Q Consensus 126 ~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 205 (604)
.|+.|+. .|..+++|++|+|++|+|+.++ .|..++
T Consensus 36 ~l~~l~~--~~~~l~~L~~L~ls~n~l~~l~--~~~~l~----------------------------------------- 70 (198)
T 1ds9_A 36 PIEKMDA--TLSTLKACKHLALSTNNIEKIS--SLSGME----------------------------------------- 70 (198)
T ss_dssp TCCCCHH--HHHHTTTCSEEECSEEEESCCC--CHHHHT-----------------------------------------
T ss_pred cHhhhhH--HHhcCCCCCEEECCCCCCcccc--ccccCC-----------------------------------------
Confidence 5556654 3889999999999999999876 555543
Q ss_pred eeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCc-ccc
Q psy15407 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAF 284 (604)
Q Consensus 206 ~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f 284 (604)
+|++|+|++|+|+.++. .+..+++|++|+|++|+|+.++ .|..+++|++|+|++|+|+.++. ..|
T Consensus 71 -----------~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l 136 (198)
T 1ds9_A 71 -----------NLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKL 136 (198)
T ss_dssp -----------TCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHH
T ss_pred -----------CCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHH
Confidence 78888999999998765 5667789999999999999985 58889999999999999998875 568
Q ss_pred cCcccceeeeccCCCcccccCC
Q psy15407 285 ADLHAITHLAIGGNPLYCDCGL 306 (604)
Q Consensus 285 ~~l~~L~~L~L~~Npl~CdC~l 306 (604)
..+++|+.|+|++|++.+.+..
T Consensus 137 ~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp TTTTTCSEEEECSCHHHHHHHT
T ss_pred hcCCCCCEEEecCCcccccccc
Confidence 8999999999999999988654
No 164
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=2.1e-14 Score=146.27 Aligned_cols=189 Identities=13% Similarity=0.038 Sum_probs=130.8
Q ss_pred CCeEEcCCCCCCcCCCCC----CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceec-CCCcCCCcccCCcCC
Q psy15407 96 GTRVDCSQRGLKEIPKDI----PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI-EDNAFEGENDQGCLG 170 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l----~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ 170 (604)
++.|+++++.+. |..+ ...++.|+|++|.|..+.+. +..+++|++|+|++|.|+.. .+..|..+++|+.|+
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 678999998877 2222 35789999999999988764 56799999999999998864 556788999999999
Q ss_pred CCCCCCCc--------cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCC-ceeec-cCCCCCCCC
Q psy15407 171 DNYCPPKC--------TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNN-QIGFL-SNFTFSPLS 240 (604)
Q Consensus 171 l~~~~~~~--------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~i~~l-~~~~f~~l~ 240 (604)
+++|.+.. ...++.+.+..+. .+.. ..+....... .+|++|+|++| .|+.. .+..+..++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~--------~l~~-~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCS--------GFSE-FALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCB--------SCCH-HHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCC--------CCCH-HHHHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 99986431 2344455544431 0110 0011111112 27888888888 77753 233566777
Q ss_pred -CCCeEEecCCc--ce--eeeccccCCCCcccEEEccCCc-cccCCcccccCcccceeeeccCCC
Q psy15407 241 -KLSQLILSYNK--LQ--CIDRDALAGLKSLRIISLHGND-ISMIPEGAFADLHAITHLAIGGNP 299 (604)
Q Consensus 241 -~L~~L~Ls~N~--l~--~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~Np 299 (604)
+|++|+|++|+ ++ .+ +..+..+++|+.|+|++|. |+......|..+++|++|+|++|+
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred cCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 88888888884 43 33 3456677888888888888 664444467778888888888886
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=1.7e-11 Score=127.48 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=44.2
Q ss_pred CCeEEcCCCCCCcCCCCCC--ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407 96 GTRVDCSQRGLKEIPKDIP--LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172 (604)
Q Consensus 96 ~~~l~cs~~~L~~iP~~l~--~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~ 172 (604)
-+.|++.++ |+.|+...+ ..++.|.|.. .|+.|.. .+|.++++|+.|+|++|+|+.|+..+|.. .+|+.|.|.
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF~~-~~L~~l~lp 211 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKE-DIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLP 211 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECS-STTTTCTTCCEEECTTSCCSEECTTTTTT-CCCSEEECC
T ss_pred ccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehH-HHhhCcccCCeeecCCCcceEechhhEee-cccCEEEeC
Confidence 456666544 666665432 2456666664 6666655 34677777777777777666666666663 556555554
No 166
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.4e-13 Score=122.10 Aligned_cols=130 Identities=24% Similarity=0.553 Sum_probs=94.4
Q ss_pred ccCCCCcCCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcC
Q psy15407 356 SKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435 (604)
Q Consensus 356 ~~c~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~ 435 (604)
.+.++|..+||.+ |+|++.+ ++|+|.|++||+|..+. .+|.... ...|..+|.|..|+.+
T Consensus 2 ~dideC~~~pC~n-g~C~n~~-g~y~C~C~~G~~g~~~~--------------~~C~~~~----~~~C~~~~~g~~C~~~ 61 (147)
T 2w86_A 2 ADIDECESSPCIN-GVCKNSP-GSFICECSSESTLDPTK--------------TICIETI----KGTCWQTVIDGRCEIN 61 (147)
T ss_dssp CCCCGGGGCCSBT-SEEEEET-TEEEEECCTTEEECTTS--------------SBEEECC----CEEEEEEEETTEEEEE
T ss_pred CcCccCcCCCCCC-CEeECCC-CCEEeECCCCcccCCCC--------------CeecCCC----CCcccCCCCCCccccC
Confidence 3568999999985 7999876 78999999999987653 2343321 2356667778888766
Q ss_pred CCcCCCC-------CCCCCcEEEeCCCCeEEecCCCCC---CCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCC
Q psy15407 436 IDDCLSH-------KCENNATCVDLIQAYECRCAPGFQ---GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGF 505 (604)
Q Consensus 436 ~~~C~~~-------~C~~~~~C~~~~~~~~C~C~~g~~---g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~ 505 (604)
+++|... ....++.|.. -.|.|.|++||+ |..|+ ++++|...+++|.+ ++|+++.++|+|.|++||
T Consensus 62 ~~~c~~~~~C~~~~g~~~g~~C~~--c~~~C~C~~Gy~~~~g~~C~-dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy 137 (147)
T 2w86_A 62 INGATLKSQCCSSLGAAWGSPCTL--CQVDPICGKGYSRIKGTQCE-DIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGM 137 (147)
T ss_dssp EEEEECHHHHHTTTCSEETTTTEE--CCCCTTTCTTEEEEETTEEE-ECCHHHHSTTCSSS-SEEEEETTEEEEECCTTC
T ss_pred CCccccCCccccCcCcccCCCccc--CCCcccCCCccccCCCCccC-ccccccCCCCCCCC-CEEECCCCCEEeeCCCCC
Confidence 6665321 1101111211 137789999995 89997 89999876677986 599999999999999999
Q ss_pred cCCc
Q psy15407 506 SGVN 509 (604)
Q Consensus 506 ~g~~ 509 (604)
+|..
T Consensus 138 ~g~~ 141 (147)
T 2w86_A 138 TLDA 141 (147)
T ss_dssp CBCT
T ss_pred ccCC
Confidence 9764
No 167
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.28 E-value=6.5e-14 Score=149.20 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=62.0
Q ss_pred cceeecCCCCceeecc----CCCCCCCCCCCeEEecCCcceeee-----ccccCCCCcccEEEccCCcccc-----CCcc
Q psy15407 217 STMYRDLSNNQIGFLS----NFTFSPLSKLSQLILSYNKLQCID-----RDALAGLKSLRIISLHGNDISM-----IPEG 282 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~-----~~~f~~l~~L~~L~Ls~N~l~~-----i~~~ 282 (604)
+|++|+|++|.|+... +..|..+++|++|+|++|+|+... +..+..+++|++|+|++|.|+. ++.
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~- 278 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR- 278 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH-
Confidence 7888888888887632 335566788888888888877642 3334467888899999888886 333
Q ss_pred cccCcccceeeeccCCCcc
Q psy15407 283 AFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 283 ~f~~l~~L~~L~L~~Npl~ 301 (604)
.+..+++|++|+|++|.+.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHCTTCCEEECTTCCCH
T ss_pred HHhhCCCcceEECCCCCCc
Confidence 4666788889999988764
No 168
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.28 E-value=4.2e-11 Score=124.49 Aligned_cols=187 Identities=12% Similarity=0.152 Sum_probs=94.0
Q ss_pred CCCeEEcCCCCCCcCCCCCC---ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCC
Q psy15407 95 DGTRVDCSQRGLKEIPKDIP---LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD 171 (604)
Q Consensus 95 ~~~~l~cs~~~L~~iP~~l~---~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l 171 (604)
.-+.|.+.+ .|+.|+...+ ..++.|+|..|.|+.|+.. +|. ..+|+.|.|.+ .|+.|...+|.++.+|+.|.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~-aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS-TFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT-TTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh-hEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEec
Confidence 345666654 5666665443 3456777777777777653 355 46777777763 377777777777777776666
Q ss_pred CCCCCCccccccEEEcc----CCccccccccccceeeeeeccccCCccccceeecCCCCcee-----eccCCCCCCCCCC
Q psy15407 172 NYCPPKCTCTVRVLFYD----GRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIG-----FLSNFTFSPLSKL 242 (604)
Q Consensus 172 ~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~-----~l~~~~f~~l~~L 242 (604)
..+- ..+... ..+..+.++.+ ...+.......-.+|+.|+|.+|.+. .|+..+|.++++|
T Consensus 234 ~~~l-------~~I~~~aF~~~~L~~i~lp~~----i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 234 PENV-------STIGQEAFRESGITTVKLPNG----VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp CTTC-------CEECTTTTTTCCCSEEEEETT----CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred CCCc-------cCccccccccCCccEEEeCCC----ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 5420 000000 00011111000 00000000001124555555554443 4555555555555
Q ss_pred CeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407 243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNP 299 (604)
Q Consensus 243 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np 299 (604)
+.|.|. +.|+.|...+|.++.+|+.|.|..| ++.|...+|... +|+.|.|.+|.
T Consensus 303 ~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 303 ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 555555 3355555555555555555555332 555555555555 55555555553
No 169
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=99.25 E-value=3.9e-12 Score=107.10 Aligned_cols=91 Identities=29% Similarity=0.752 Sum_probs=63.1
Q ss_pred CCCcCCCCC--------CCCCcEEEeCCCCeEEecCCCCCCCCcccCC--CcCCCCCCCCCCCCceeecCCCeEEecCCC
Q psy15407 435 NIDDCLSHK--------CENNATCVDLIQAYECRCAPGFQGEFCQTKT--PFCAGEYNPCRNGARCLDHFSHYTCECTPG 504 (604)
Q Consensus 435 ~~~~C~~~~--------C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~--~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g 504 (604)
++++|...| |.++++|+++.++|+|.|++||+|..|+..+ ++|......|.. +|+++.++|+|.|++|
T Consensus 5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~g~y~C~C~~G 82 (114)
T 1aut_L 5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSCAPG 82 (114)
T ss_dssp ---CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECSSSEEEECCTT
T ss_pred ecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCCCCEEeECCCC
Confidence 567777777 8888999998899999999999999987543 357654445553 8999999999999999
Q ss_pred CcC----CcCcccCCCCCCCCCCCCCEEeeC
Q psy15407 505 FSG----VNCTVNVDDCVNHMCQNGGTCVDG 531 (604)
Q Consensus 505 ~~g----~~c~~~~~~C~~~~C~~~~~C~~~ 531 (604)
|+| ..|.. ....||..++.|+..
T Consensus 83 ~~~~~~g~~C~~----~~~~pC~~~~~~i~~ 109 (114)
T 1aut_L 83 YKLGDDLLQCHP----AVKFPCGRPWKRMEK 109 (114)
T ss_dssp EEECTTSSCEEE----CSSSCTTCCC-----
T ss_pred eeECCCCCccCc----CcccCCCCCCccCCC
Confidence 984 44432 234578887777654
No 170
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.25 E-value=7.8e-14 Score=148.60 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=59.5
Q ss_pred cceeecCCCCceeecc----CCCCCCCCCCCeEEecCCcceeeeccccCC-----CCcccEEEccCCccc-----cCCcc
Q psy15407 217 STMYRDLSNNQIGFLS----NFTFSPLSKLSQLILSYNKLQCIDRDALAG-----LKSLRIISLHGNDIS-----MIPEG 282 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~-----l~~L~~L~Ls~N~l~-----~i~~~ 282 (604)
+|++|+|++|.|+... +..|..+++|++|+|++|+|+...+..+.. .++|++|+|++|+|+ .++.
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~- 392 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA- 392 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-
Confidence 7788888888877542 234556688888888888887654433321 568888888888887 3443
Q ss_pred cccCcccceeeeccCCCcc
Q psy15407 283 AFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 283 ~f~~l~~L~~L~L~~Npl~ 301 (604)
.+..+++|++|+|++|++.
T Consensus 393 ~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHCCCCCEEECCSSSCC
T ss_pred HHHhCCCccEEECCCCCCC
Confidence 4666788888888888875
No 171
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=99.23 E-value=5.9e-12 Score=99.04 Aligned_cols=68 Identities=28% Similarity=0.860 Sum_probs=31.4
Q ss_pred cCCCCCC-CCCCCCCEEeeCCCCeEeeeCCCCc--cCCCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeecC
Q psy15407 513 NVDDCVN-HMCQNGGTCVDGINDYTCKCEGDFV--GKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKCA 588 (604)
Q Consensus 513 ~~~~C~~-~~C~~~~~C~~~~~~y~C~C~~G~~--G~~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C~ 588 (604)
++++|.. ++|.+ ++|++..++|+|.|++||+ |..|+. +++|. .+.|.++.|+++. ++|+|.|+
T Consensus 4 dideC~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~d----------ideC~~~~~C~~~~C~n~~--g~y~C~C~ 70 (82)
T 1emn_A 4 DMDECKEPDVCKH-GQCINTDGSYRCECPFGYILAGNECVD----------TDECSVGNPCGNGTCKNVI--GGFECTCE 70 (82)
T ss_dssp CCCSSSSTTSCSS-SEECCCSSCCCEECCTTEEEETTEEEE----------CCGGGTCCTTSSSCEEECS--SSEEECCS
T ss_pred ccccCCCCCCcCC-CEEEecCCCEEEECCCCeECCCCccCC----------cccccCCCCCCCCEeECCC--CCEEeECC
Confidence 3444442 44543 4555555555555555554 444432 33443 3344444455544 44555555
Q ss_pred CCCcC
Q psy15407 589 PGYSG 593 (604)
Q Consensus 589 ~G~~G 593 (604)
+||.|
T Consensus 71 ~G~~g 75 (82)
T 1emn_A 71 EGFEP 75 (82)
T ss_dssp SSSCC
T ss_pred CCeEe
Confidence 55544
No 172
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=99.19 E-value=1.5e-11 Score=96.76 Aligned_cols=70 Identities=31% Similarity=0.851 Sum_probs=52.6
Q ss_pred CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc--CCcCcccCCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407 473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS--GVNCTVNVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVGK 546 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~--g~~c~~~~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~G~ 546 (604)
++++|.. .++|.+ ++|+++.++|+|.|++||+ |..|. ++++|. .++|.+ ++|++..++|+|.|++||+|.
T Consensus 4 dideC~~-~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~-dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g~ 76 (82)
T 1emn_A 4 DMDECKE-PDVCKH-GQCINTDGSYRCECPFGYILAGNECV-DTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEPG 76 (82)
T ss_dssp CCCSSSS-TTSCSS-SEECCCSSCCCEECCTTEEEETTEEE-ECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCCC
T ss_pred ccccCCC-CCCcCC-CEEEecCCCEEEECCCCeECCCCccC-CcccccCCCCCCC-CEeECCCCCEEeECCCCeEeC
Confidence 5667764 457764 6788888888888888886 77774 778886 567875 588888888888888888765
No 173
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=99.18 E-value=1.1e-11 Score=98.65 Aligned_cols=71 Identities=24% Similarity=0.722 Sum_probs=55.5
Q ss_pred CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc-----CCcCcccCCCCCCCC--CCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407 473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS-----GVNCTVNVDDCVNHM--CQNGGTCVDGINDYTCKCEGDFVG 545 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~-----g~~c~~~~~~C~~~~--C~~~~~C~~~~~~y~C~C~~G~~G 545 (604)
++++|...++.|.+ ++|+++.++|+|.|++||+ |..|. ++++|...+ |. +++|+++.|+|+|.|++||+|
T Consensus 2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~ 78 (86)
T 1lmj_A 2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL 78 (86)
T ss_dssp CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCCCCEEEECcCCccc
Confidence 46777766666864 4888888888888888887 66775 788887655 65 578999999999999999986
Q ss_pred C
Q psy15407 546 K 546 (604)
Q Consensus 546 ~ 546 (604)
.
T Consensus 79 ~ 79 (86)
T 1lmj_A 79 S 79 (86)
T ss_dssp C
T ss_pred C
Confidence 5
No 174
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=99.16 E-value=1.9e-11 Score=107.43 Aligned_cols=74 Identities=38% Similarity=0.862 Sum_probs=58.4
Q ss_pred cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCC--CCCCCCce-eCCCCCCCeeeecCC
Q psy15407 513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH--HDCKNGIC-FQPQGSNDYLCKCAP 589 (604)
Q Consensus 513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~--~~C~~g~C-~~~~g~~~~~C~C~~ 589 (604)
++++|..+||.++|+|++..++|+|.|++||+|..|+. .++|.. ..|.+ .| +++. ++|+|.|++
T Consensus 47 dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~----------~deC~~~~~~C~~-~C~~n~~--g~y~C~C~~ 113 (146)
T 1x7a_L 47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL----------DATCNIKNGRCKQ-FCKTGAD--SKVLCSCTT 113 (146)
T ss_dssp ---CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTCE----------ECCTTSGGGSCSS-BCCCCSS--SCCCCBCCT
T ss_pred CcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCCC----------CccccCCCCCCcC-CCCCCCC--CCEEeEcCC
Confidence 78889888999999999999999999999999999985 356654 34655 68 8888 779999999
Q ss_pred CCc----CCCCCCC
Q psy15407 590 GYS----GKESLLQ 599 (604)
Q Consensus 590 G~~----G~~C~~~ 599 (604)
||+ |..|+..
T Consensus 114 Gy~l~~dG~~C~~~ 127 (146)
T 1x7a_L 114 GYRLAPDQKSCKPA 127 (146)
T ss_dssp TEEECTTSSSEEEC
T ss_pred CcEeCCCCCcCCCC
Confidence 998 8888643
No 175
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=4.2e-11 Score=108.97 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=76.3
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 296 (604)
+.+.|++++|+|+.++...+ ++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++.+|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 45678999999999987553 789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q psy15407 297 GNPLY 301 (604)
Q Consensus 297 ~Npl~ 301 (604)
+|.+.
T Consensus 87 ~N~l~ 91 (170)
T 3g39_A 87 DNQLK 91 (170)
T ss_dssp SSCCC
T ss_pred CCccC
Confidence 99986
No 176
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.15 E-value=5.1e-11 Score=102.72 Aligned_cols=66 Identities=42% Similarity=0.818 Sum_probs=58.9
Q ss_pred CCCCCCeeCCCeEEcCCCCCC--cCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcce
Q psy15407 87 ACPSGCSCDGTRVDCSQRGLK--EIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153 (604)
Q Consensus 87 ~CP~~C~C~~~~l~cs~~~L~--~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~ 153 (604)
+||..|.|.+++|+|++++|+ +||..+|..+++|+|++|+|+.|+. ++|..|++|++|+|++|.+.
T Consensus 1 ~CP~~C~C~~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 1 PCPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CCCTTCEEETTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred CcCCCCEEcCCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 499999999999999999999 9999999999999999999999976 45888888888888888653
No 177
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=99.14 E-value=2.9e-11 Score=106.26 Aligned_cols=74 Identities=32% Similarity=0.776 Sum_probs=60.1
Q ss_pred CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCce-eecCCCeEEecCCCCc----CCc
Q psy15407 435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARC-LDHFSHYTCECTPGFS----GVN 509 (604)
Q Consensus 435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C-~~~~~~~~C~C~~g~~----g~~ 509 (604)
++++|...||.++++|++..++|.|.|++||+|..|+. +++|......|.+ +| ++..++|+|.|++||+ |..
T Consensus 47 dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~-~deC~~~~~~C~~--~C~~n~~g~y~C~C~~Gy~l~~dG~~ 123 (146)
T 1x7a_L 47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL-DATCNIKNGRCKQ--FCKTGADSKVLCSCTTGYRLAPDQKS 123 (146)
T ss_dssp ---CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTCE-ECCTTSGGGSCSS--BCCCCSSSCCCCBCCTTEEECTTSSS
T ss_pred CcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCCC-CccccCCCCCCcC--CCCCCCCCCEEeEcCCCcEeCCCCCc
Confidence 78889889999999999999999999999999999974 4788765556765 79 8888999999999998 777
Q ss_pred Cc
Q psy15407 510 CT 511 (604)
Q Consensus 510 c~ 511 (604)
|.
T Consensus 124 C~ 125 (146)
T 1x7a_L 124 CK 125 (146)
T ss_dssp EE
T ss_pred CC
Confidence 76
No 178
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=99.13 E-value=1.2e-11 Score=113.23 Aligned_cols=85 Identities=27% Similarity=0.720 Sum_probs=32.7
Q ss_pred CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCC-CcCCCCCCCCCCCCceeecCCCeEEecCCCCc----CCc
Q psy15407 435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFSHYTCECTPGFS----GVN 509 (604)
Q Consensus 435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~-~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~ 509 (604)
++++|...||.++|+|++..++|.|.|++||+|..|+..+ ++|.....+|.+ .|++..++|+|.|++||+ |..
T Consensus 41 dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~l~~dG~~ 118 (195)
T 1nfu_B 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKA 118 (195)
T ss_dssp ----------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSC
T ss_pred CCcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccccccccCCCCCCCC--EeECCCCCeEEECCCCceeCCCCCc
Confidence 7888888889888899888888999999999998887656 778765566765 898888889999999998 888
Q ss_pred CcccCCCCCCCCCCCC
Q psy15407 510 CTVNVDDCVNHMCQNG 525 (604)
Q Consensus 510 c~~~~~~C~~~~C~~~ 525 (604)
|...+ ..||.+.
T Consensus 119 C~~~~----~~PC~~~ 130 (195)
T 1nfu_B 119 CIPTG----PYPCGKQ 130 (195)
T ss_dssp EEESS----SSCTTCC
T ss_pred cccCC----CCCCCCC
Confidence 86322 3466654
No 179
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=99.13 E-value=2.7e-11 Score=96.50 Aligned_cols=73 Identities=27% Similarity=0.671 Sum_probs=60.4
Q ss_pred CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc----CCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCC
Q psy15407 473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS----GVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFC 548 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C 548 (604)
++++|...+..| ++++|++..++|+|.|++||+ |..|+ ++++|..++|. ++|+++.|+|+|.|+ ||.|..+
T Consensus 2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~g~y~C~C~-g~~G~~~ 76 (87)
T 1z6c_A 2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYCD-GKKGFKL 76 (87)
T ss_dssp CSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCSSSCCEECC-SSSCCBC
T ss_pred ccccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccCCCEEEECC-CCcCCcc
Confidence 467787665568 678899999999999999998 77885 88999888897 699999999999998 7777766
Q ss_pred Cc
Q psy15407 549 EI 550 (604)
Q Consensus 549 ~~ 550 (604)
+.
T Consensus 77 ~~ 78 (87)
T 1z6c_A 77 AQ 78 (87)
T ss_dssp CT
T ss_pred cC
Confidence 64
No 180
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=7.8e-11 Score=107.58 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=75.3
Q ss_pred ceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccC
Q psy15407 218 TMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGG 297 (604)
Q Consensus 218 L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 297 (604)
...+++++|+|+.++...+ ++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++.+|..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3578999999999987543 7899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q psy15407 298 NPLY 301 (604)
Q Consensus 298 Npl~ 301 (604)
|.+.
T Consensus 91 N~l~ 94 (174)
T 2r9u_A 91 NHLK 94 (174)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 9887
No 181
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=4.4e-11 Score=122.29 Aligned_cols=85 Identities=27% Similarity=0.293 Sum_probs=68.3
Q ss_pred cCcEEecCC-CcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407 116 YTTELILND-NEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC 194 (604)
Q Consensus 116 ~~~~L~L~~-N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~ 194 (604)
.+++|+|++ |+|+.|++. .|.+|++|++|+|++|+|+.+++.+|.+|+
T Consensus 32 ~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~------------------------------ 80 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTP------------------------------ 80 (347)
T ss_dssp CCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEECTTGGGSCS------------------------------
T ss_pred CeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeCHHHhcCCc------------------------------
Confidence 578999996 999999864 499999999999999999999998887764
Q ss_pred ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407 195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC 254 (604)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~ 254 (604)
+|++|+|++|+|+.+++..|..++ |+.|+|++|.|..
T Consensus 81 ----------------------~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 81 ----------------------RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ----------------------CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ----------------------CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 666777777777777776666655 7777777776654
No 182
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=99.09 E-value=4e-11 Score=95.30 Aligned_cols=72 Identities=31% Similarity=0.773 Sum_probs=52.8
Q ss_pred CCCcCCCCC--CCCCcEEEeCCCCeEEecCCCCC-----CCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcC
Q psy15407 435 NIDDCLSHK--CENNATCVDLIQAYECRCAPGFQ-----GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG 507 (604)
Q Consensus 435 ~~~~C~~~~--C~~~~~C~~~~~~~~C~C~~g~~-----g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 507 (604)
++++|...+ |.+ ++|+++.++|+|.|++||+ |..|+ ++++|...+..|. +++|+++.++|+|.|++||++
T Consensus 2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~ 78 (86)
T 1lmj_A 2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL 78 (86)
T ss_dssp CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCCCCEEEECcCCccc
Confidence 567777654 754 4888888888888888886 66775 6777876555575 468888888888888888876
Q ss_pred Cc
Q psy15407 508 VN 509 (604)
Q Consensus 508 ~~ 509 (604)
..
T Consensus 79 ~~ 80 (86)
T 1lmj_A 79 SP 80 (86)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 183
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=99.08 E-value=8.8e-11 Score=102.94 Aligned_cols=75 Identities=39% Similarity=0.824 Sum_probs=51.6
Q ss_pred CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCC---ceeecCC-CeEEecCCCCc----
Q psy15407 435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGA---RCLDHFS-HYTCECTPGFS---- 506 (604)
Q Consensus 435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~---~C~~~~~-~~~C~C~~g~~---- 506 (604)
++++|...||.++++|+++.++|.|.|++||+|..|+..+++|.. .+|.+++ +|++..+ +|+|.|++||+
T Consensus 46 did~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~--c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~d 123 (142)
T 2c4f_L 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLI--CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLAD 123 (142)
T ss_dssp TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCS--TTTGGGGCSSEEECCTTSCCEEECCTTEEECTT
T ss_pred ccCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccccCcccccc--ccCCCCCccCEeECCCCCCEEEECCCCceECCC
Confidence 667777777877778887777788888888888777654444321 1222333 6777777 78888888887
Q ss_pred CCcCc
Q psy15407 507 GVNCT 511 (604)
Q Consensus 507 g~~c~ 511 (604)
|..|.
T Consensus 124 G~~C~ 128 (142)
T 2c4f_L 124 GVSCT 128 (142)
T ss_dssp SSCEE
T ss_pred CCCCC
Confidence 66775
No 184
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=99.06 E-value=3.7e-11 Score=104.14 Aligned_cols=75 Identities=29% Similarity=0.815 Sum_probs=26.2
Q ss_pred CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCC-CcCCCCCCCCCCCCceeecCCCeEEecCCCCc----CCc
Q psy15407 435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFSHYTCECTPGFS----GVN 509 (604)
Q Consensus 435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~-~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~ 509 (604)
++++|...||.++|+|++..++|.|.|++||+|..|+..+ ++|.....+|.+ +|++..++|+|.|++||+ |..
T Consensus 41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~l~~~g~~ 118 (134)
T 2vh0_B 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKA 118 (134)
T ss_dssp ----------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSC
T ss_pred CcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccCCCCccccCCCCCCC--EeECCCCCEEEECCCCcEECCCCCc
Confidence 6788888888888888888888888888888888887655 677654456764 788888888888888888 777
Q ss_pred Cc
Q psy15407 510 CT 511 (604)
Q Consensus 510 c~ 511 (604)
|.
T Consensus 119 C~ 120 (134)
T 2vh0_B 119 CI 120 (134)
T ss_dssp EE
T ss_pred cC
Confidence 75
No 185
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=1.8e-12 Score=133.50 Aligned_cols=40 Identities=18% Similarity=0.085 Sum_probs=19.4
Q ss_pred cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceec
Q psy15407 116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155 (604)
Q Consensus 116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i 155 (604)
.+++|+|++|.|+......++..+++|++|+|++|.|+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 4555666666554322112233345555666666655443
No 186
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=99.05 E-value=1.5e-10 Score=101.45 Aligned_cols=76 Identities=36% Similarity=0.855 Sum_probs=65.4
Q ss_pred CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCC---EEeeCCC-CeEeeeCCCCc----
Q psy15407 473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG---TCVDGIN-DYTCKCEGDFV---- 544 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~---~C~~~~~-~y~C~C~~G~~---- 544 (604)
++++|.. ++|.++++|++..++|+|.|++||+|..|+.++++|...+|.+++ +|++..+ +|+|.|++||+
T Consensus 46 did~C~~--~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~d 123 (142)
T 2c4f_L 46 DGDQCAS--SPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLAD 123 (142)
T ss_dssp TCCGGGG--CCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTT
T ss_pred ccCcCcC--CCcCCCCEEeCCCCCEEeeCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCC
Confidence 6778874 689999999999999999999999999998766776555565555 9999999 99999999999
Q ss_pred cCCCCc
Q psy15407 545 GKFCEI 550 (604)
Q Consensus 545 G~~C~~ 550 (604)
|..|+.
T Consensus 124 G~~C~~ 129 (142)
T 2c4f_L 124 GVSCTP 129 (142)
T ss_dssp SSCEEE
T ss_pred CCCCCC
Confidence 888875
No 187
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=99.05 E-value=5.1e-11 Score=98.55 Aligned_cols=79 Identities=27% Similarity=0.578 Sum_probs=33.8
Q ss_pred cCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcC---CcCcccCCCCCC-CCCCCCCEEeeCCCCeE
Q psy15407 461 CAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG---VNCTVNVDDCVN-HMCQNGGTCVDGINDYT 536 (604)
Q Consensus 461 C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g---~~c~~~~~~C~~-~~C~~~~~C~~~~~~y~ 536 (604)
...||.|+.| ++++|......|. +.|++..++|+|.|++||+| ..|+ ++++|.. ++|. ++|+++.++|+
T Consensus 18 ~~~~~~~~~C--d~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gsy~ 90 (107)
T 2w2n_E 18 TENLYFQGAM--GTNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYK 90 (107)
T ss_dssp --CCCCSCCB--SCCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEE-C------------------------
T ss_pred cCCCcCCCCC--cCccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCccc-cccccCCCCCcC--CeeecCCCCEE
Confidence 4567777777 4567765445564 47888888888888888887 6776 7888874 6786 58988888999
Q ss_pred eeeCCCCccC
Q psy15407 537 CKCEGDFVGK 546 (604)
Q Consensus 537 C~C~~G~~G~ 546 (604)
|.|++||.|.
T Consensus 91 C~C~~Gy~~~ 100 (107)
T 2w2n_E 91 CQCEEGFQLD 100 (107)
T ss_dssp ----------
T ss_pred EECCCCceEC
Confidence 9999999865
No 188
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=99.04 E-value=7.5e-11 Score=93.89 Aligned_cols=76 Identities=36% Similarity=0.868 Sum_probs=50.4
Q ss_pred cCCCCCCCC--CCCCCeeeeCCCCceEeeCCCCCc----CCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCC
Q psy15407 396 MIDACYGNP--CRNSGTCKLLEEGRFNCECAPGYT----GDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEF 469 (604)
Q Consensus 396 ~~~~C~~~~--C~~~~~C~~~~~~~~~C~C~~g~~----g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~ 469 (604)
++++|..+| | ++++|.+ ..++|.|.|++||+ |..|+ ++++|...+|. ++|+++.++|.|.|+ ||.|..
T Consensus 2 dideC~~~~~~C-~~~~C~n-~~g~y~C~C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~g~y~C~C~-g~~G~~ 75 (87)
T 1z6c_A 2 DVDECSLKPSIC-GTAVCKN-IPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYCD-GKKGFK 75 (87)
T ss_dssp CSCSSSSSSSSB-TTSSCCC-BTTBCCCSSSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCSSSCCEECC-SSSCCB
T ss_pred ccccccCCCCCC-CCCEeEC-CCCCEEEECCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccCCCEEEECC-CCcCCc
Confidence 456676666 6 5667765 35677777777777 56675 67777767775 577777777777776 666665
Q ss_pred cccCCCcC
Q psy15407 470 CQTKTPFC 477 (604)
Q Consensus 470 C~~~~~~C 477 (604)
++.+...|
T Consensus 76 ~~~~~~~C 83 (87)
T 1z6c_A 76 LAQDQKSC 83 (87)
T ss_dssp CCTTSSSC
T ss_pred ccCCCCcc
Confidence 55444433
No 189
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=99.04 E-value=2.1e-11 Score=111.65 Aligned_cols=76 Identities=41% Similarity=0.945 Sum_probs=26.5
Q ss_pred cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCC--CCCCCCceeCCCCCCCeeeecCCC
Q psy15407 513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH--HDCKNGICFQPQGSNDYLCKCAPG 590 (604)
Q Consensus 513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~--~~C~~g~C~~~~g~~~~~C~C~~G 590 (604)
++++|..+||.++|+|++..++|+|.|++||+|..|+... .+.|.. ..|.+ .|++.. ++|+|.|++|
T Consensus 41 dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i--------~deC~~~~~~C~~-~C~n~~--gsy~C~C~~G 109 (195)
T 1nfu_B 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFT--------RKLCSLDNGDCDQ-FCHEEQ--NSVVCSCARG 109 (195)
T ss_dssp ------------------------------------------------CCGGGTGGGGCSS-EEEEET--TEEEEECCTT
T ss_pred CCcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccc--------cccccCCCCCCCC-EeECCC--CCeEEECCCC
Confidence 7788988899999999999899999999999999988521 145654 34665 788888 7899999999
Q ss_pred Cc----CCCCCCC
Q psy15407 591 YS----GKESLLQ 599 (604)
Q Consensus 591 ~~----G~~C~~~ 599 (604)
|+ |..|+..
T Consensus 110 y~l~~dG~~C~~~ 122 (195)
T 1nfu_B 110 YTLADNGKACIPT 122 (195)
T ss_dssp EEECTTSSCEEES
T ss_pred ceeCCCCCccccC
Confidence 99 8888654
No 190
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=99.02 E-value=2.7e-10 Score=95.76 Aligned_cols=89 Identities=28% Similarity=0.696 Sum_probs=60.6
Q ss_pred cCCCCCCCC--------CCCCCeeeeCCCCceEeeCCCCCcCCCCCcCC--CcCCCC--CCCCCcEEEeCCCCeEEecCC
Q psy15407 396 MIDACYGNP--------CRNSGTCKLLEEGRFNCECAPGYTGDRCEINI--DDCLSH--KCENNATCVDLIQAYECRCAP 463 (604)
Q Consensus 396 ~~~~C~~~~--------C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~--~~C~~~--~C~~~~~C~~~~~~~~C~C~~ 463 (604)
++++|..+| |.++++|++ ..++|.|.|++||+|..|+..+ ++|... .|.. +|+++.++|+|.|++
T Consensus 5 d~d~C~~~p~~~~C~~~C~~~g~C~~-~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~g~y~C~C~~ 81 (114)
T 1aut_L 5 DGDQCLVLPLEHPCASLCCGHGTCID-GIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSCAP 81 (114)
T ss_dssp ---CCCCCSSCCSSSSTTTTSEEECC-CSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECSSSEEEECCT
T ss_pred ecccccCCCccccccccCCCcCCCCC-CCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCCCCEEeECCC
Confidence 567777777 888899976 4678999999999999998443 467643 3443 899999999999999
Q ss_pred CCCC----CCcccCCCcCCCCCCCCCCCCceeec
Q psy15407 464 GFQG----EFCQTKTPFCAGEYNPCRNGARCLDH 493 (604)
Q Consensus 464 g~~g----~~C~~~~~~C~~~~~~C~~~~~C~~~ 493 (604)
||+| ..|+.. ...+|.+.+.|+..
T Consensus 82 G~~~~~~g~~C~~~------~~~pC~~~~~~i~~ 109 (114)
T 1aut_L 82 GYKLGDDLLQCHPA------VKFPCGRPWKRMEK 109 (114)
T ss_dssp TEEECTTSSCEEEC------SSSCTTCCC-----
T ss_pred CeeECCCCCccCcC------cccCCCCCCccCCC
Confidence 9984 455422 12467777766543
No 191
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=99.01 E-value=1.1e-10 Score=104.58 Aligned_cols=133 Identities=27% Similarity=0.725 Sum_probs=75.5
Q ss_pred CCCCCCeeecCCC-Cceee-eCCCCCcCCCCcccCCCCCCCCCCCC---CeeeeCCCCceEeeCCCCCcCCCCCcCCCcC
Q psy15407 365 PCTNQGVCEPLPE-RQYQC-RCTPGYHGQHCEFMIDACYGNPCRNS---GTCKLLEEGRFNCECAPGYTGDRCEINIDDC 439 (604)
Q Consensus 365 ~C~~~g~C~~~~~-~~~~C-~C~~g~~G~~c~~~~~~C~~~~C~~~---~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C 439 (604)
||.++++|...+. +.++| .|+.+|+|..|+.-.+.-+..|+... ..|. .|.|......
T Consensus 2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~-------~C~C~~~~~~---------- 64 (162)
T 1klo_A 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCR-------PCQCNDNIDP---------- 64 (162)
T ss_dssp CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEE-------ECCSTTCBCT----------
T ss_pred cCcCcCcccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCe-------eCcCCCCCCc----------
Confidence 6888899987653 56889 79999999988841111111122110 1121 2333322110
Q ss_pred CCCCCCCCcEEEeCCCCeEE-ecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCc-ccCCCC
Q psy15407 440 LSHKCENNATCVDLIQAYEC-RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT-VNVDDC 517 (604)
Q Consensus 440 ~~~~C~~~~~C~~~~~~~~C-~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~-~~~~~C 517 (604)
...+.|... ...| .|.++|+|..|+ +|.+||.|..+. ...+.|
T Consensus 65 -----~~~~~C~~~--tG~C~~C~~g~~G~~Ce----------------------------~C~~Gy~g~~~~~~~~~~C 109 (162)
T 1klo_A 65 -----NAVGNCNRL--TGECLKCIYNTAGFYCD----------------------------RCKEGFFGNPLAPNPADKC 109 (162)
T ss_dssp -----TCSCCBCTT--TCCBCCBCTTEETTTTC----------------------------EECTTEEECTTCSSGGGSE
T ss_pred -----ccCCcccCC--CCcccCCCCCCcCCCcC----------------------------cCchhhcCCccccCCCCCC
Confidence 000233211 2357 378888777664 266677776664 223445
Q ss_pred CCCCCCCCC------EEeeCCCCeEeeeCCCCccCCCCcC
Q psy15407 518 VNHMCQNGG------TCVDGINDYTCKCEGDFVGKFCEIA 551 (604)
Q Consensus 518 ~~~~C~~~~------~C~~~~~~y~C~C~~G~~G~~C~~~ 551 (604)
..-.|.+.| .|....| +|.|++||+|.+|+..
T Consensus 110 ~~C~C~~~Gs~~~~~~Cd~~tG--~C~C~~g~~G~~Cd~C 147 (162)
T 1klo_A 110 KACACNPYGTVQQQSSCNPVTG--QCQCLPHVSGRDCGTC 147 (162)
T ss_dssp EECCCCTTTBGGGCCCCCTTTC--CCCBCTTEESTTCCEE
T ss_pred eeccCCCCCccCCCCCCCCCCC--EeECCCCCcCCCCCCC
Confidence 555566544 6765444 8999999999999864
No 192
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=99.00 E-value=4.1e-11 Score=103.90 Aligned_cols=76 Identities=41% Similarity=0.945 Sum_probs=27.2
Q ss_pred cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCC--CCCCCCceeCCCCCCCeeeecCCC
Q psy15407 513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH--HDCKNGICFQPQGSNDYLCKCAPG 590 (604)
Q Consensus 513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~--~~C~~g~C~~~~g~~~~~C~C~~G 590 (604)
++++|..+||.++|+|++..++|+|.|++||+|..|+... .+.|.. ..|.+ .|+++. ++|+|.|++|
T Consensus 41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i--------~d~C~~~~~~C~~-~C~~~~--g~y~C~C~~G 109 (134)
T 2vh0_B 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFT--------RKLCSLDNGDCDQ-FCHEEQ--NSVVCSCARG 109 (134)
T ss_dssp ------------------------------------------------CCGGGTGGGGCSS-EEEEET--TEEEEECCTT
T ss_pred CcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccCC--------CCccccCCCCCCC-EeECCC--CCEEEECCCC
Confidence 7789998999999999999999999999999999998621 145653 34666 799988 7899999999
Q ss_pred Cc----CCCCCCC
Q psy15407 591 YS----GKESLLQ 599 (604)
Q Consensus 591 ~~----G~~C~~~ 599 (604)
|+ |..|+..
T Consensus 110 y~l~~~g~~C~~~ 122 (134)
T 2vh0_B 110 YTLADNGKACIPT 122 (134)
T ss_dssp EEECTTSSCEEES
T ss_pred cEECCCCCccCcC
Confidence 99 9998643
No 193
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=98.97 E-value=3.3e-10 Score=105.74 Aligned_cols=61 Identities=26% Similarity=0.697 Sum_probs=52.1
Q ss_pred CCCCCCCceeecCCCeEEecCCC------CcCCcCcccCCCCCCC---CCCCC--CEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407 482 NPCRNGARCLDHFSHYTCECTPG------FSGVNCTVNVDDCVNH---MCQNG--GTCVDGINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 482 ~~C~~~~~C~~~~~~~~C~C~~g------~~g~~c~~~~~~C~~~---~C~~~--~~C~~~~~~y~C~C~~G~~G~~C~~ 550 (604)
.+|.++|+|+. .+|.|.+| |+|..|+.+.+.|..+ +|..+ |+|+.. +|.|.+||+|..|+.
T Consensus 143 ~~Csg~G~C~~----g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~g----~C~C~~G~~G~~C~~ 214 (217)
T 2p28_B 143 IICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHPGFEGSACQH 214 (217)
T ss_dssp CBGGGTEEEET----TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEETT----EEEECTTEESTTSCE
T ss_pred CCCCCCCEEeC----CceECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeCC----eeECCCCCccCCcCC
Confidence 47888899984 37999999 6999998777889765 79988 999963 899999999999985
No 194
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.94 E-value=6.9e-09 Score=115.71 Aligned_cols=167 Identities=21% Similarity=0.618 Sum_probs=114.3
Q ss_pred CCCCCeeeeCCCCceEe----eCCCCCcCCCCCcCCCcCCCC--CCCCCcEEEeCCCCeEEe----cCCCCCCCCcccCC
Q psy15407 405 CRNSGTCKLLEEGRFNC----ECAPGYTGDRCEINIDDCLSH--KCENNATCVDLIQAYECR----CAPGFQGEFCQTKT 474 (604)
Q Consensus 405 C~~~~~C~~~~~~~~~C----~C~~g~~g~~C~~~~~~C~~~--~C~~~~~C~~~~~~~~C~----C~~g~~g~~C~~~~ 474 (604)
|.+ +.|+. ..+.| .|..|.-...|. ..+|... .|. ++.|+. .++.|. |..|.-+..|.. .
T Consensus 183 C~~-g~Ci~---~~~~CDg~~dC~dgsDE~~C~--~~~C~~~~f~C~-~g~Ci~--~~~~Cdg~~dC~dgsde~~C~~-~ 252 (699)
T 1n7d_A 183 CLS-GECIH---SSWRCDGGPDCKDKSDEENCA--VATCRPDEFQCS-DGNCIH--GSRQCDREYDCKDMSDEVGCVN-V 252 (699)
T ss_dssp CSS-SCCCS---TTCTTSSSCCSTTSCSSCSCC--CCCCCSSEEESS-SSCEEE--TTCCSSSCCCSSSSCSSSSTTC-C
T ss_pred cCC-CceEe---chhccCCCCCCCCCcccccCC--CcccCCCcEecC-CCceee--eecccCCCCCCCCCCccCCCCC-C
Confidence 443 36654 25566 677777666775 3455433 465 467887 356775 888887777853 4
Q ss_pred CcCC-CCCCCCCCCCceeecCC--CeEEecCCCCcCCcCcccCCCCCCC--CCCCCCEEeeCCCCeEeeeCCCCc---cC
Q psy15407 475 PFCA-GEYNPCRNGARCLDHFS--HYTCECTPGFSGVNCTVNVDDCVNH--MCQNGGTCVDGINDYTCKCEGDFV---GK 546 (604)
Q Consensus 475 ~~C~-~~~~~C~~~~~C~~~~~--~~~C~C~~g~~g~~c~~~~~~C~~~--~C~~~~~C~~~~~~y~C~C~~G~~---G~ 546 (604)
..|. .....|.+ +.|++... .+.+.|..|+.+....-++++|... .|. +.|+++.++|+|.|++||. |.
T Consensus 253 ~~C~~~~~~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~~~~~~ 329 (699)
T 1n7d_A 253 TLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQR 329 (699)
T ss_dssp CCCCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSC--TTCCCCTTCCCCCCCSSSCCCSSS
T ss_pred CcccCCCceecCC-CcEeCCcccccccceecCcccccccccccccccccccCcC--CCcccCCCCcEEeCCCCeEcCCCC
Confidence 4563 33456765 57875432 2457788888765444467888654 364 4799999999999999998 77
Q ss_pred CCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeecCCCCcC----CCCC
Q psy15407 547 FCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKCAPGYSG----KESL 597 (604)
Q Consensus 547 ~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C~~G~~G----~~C~ 597 (604)
.|+. +++|. ...|.+ .|+++. ++|+|.|++||.+ +.|.
T Consensus 330 ~C~d----------ideC~~~~~C~~-~C~n~~--g~y~C~C~~G~~~~~~~~~C~ 372 (699)
T 1n7d_A 330 RCED----------IDECQDPDTCSQ-LCVNLE--GGYKCQCEEGFQLDPHTKACK 372 (699)
T ss_dssp CCCC----------CCCCSSSSSCTT-TCCBCS--SCBCCCCCSSCBCCSSCCCCB
T ss_pred cccC----------ccccCCCCcccc-ccccCC--CCeeeeeecccccCCCCCccc
Confidence 7874 56775 455753 699999 7899999999985 5564
No 195
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=98.93 E-value=3.8e-10 Score=100.99 Aligned_cols=32 Identities=28% Similarity=0.667 Sum_probs=22.6
Q ss_pred CCCCCCCCCC-------ceeCCCCCCCeeeecCCCCcCCCCCC
Q psy15407 563 PCQHHDCKNG-------ICFQPQGSNDYLCKCAPGYSGKESLL 598 (604)
Q Consensus 563 ~C~~~~C~~g-------~C~~~~g~~~~~C~C~~G~~G~~C~~ 598 (604)
.|....|.+. .|....| +|.|++||+|++|+.
T Consensus 108 ~C~~C~C~~~Gs~~~~~~Cd~~tG----~C~C~~g~~G~~Cd~ 146 (162)
T 1klo_A 108 KCKACACNPYGTVQQQSSCNPVTG----QCQCLPHVSGRDCGT 146 (162)
T ss_dssp SEEECCCCTTTBGGGCCCCCTTTC----CCCBCTTEESTTCCE
T ss_pred CCeeccCCCCCccCCCCCCCCCCC----EeECCCCCcCCCCCC
Confidence 4555556542 4765554 599999999999985
No 196
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=98.90 E-value=3e-10 Score=93.92 Aligned_cols=79 Identities=23% Similarity=0.577 Sum_probs=36.6
Q ss_pred ecCCCCcCCcCcccCCCCCC--CCCCCCCEEeeCCCCeEeeeCCCCcc---CCCCcCcccccCCCCCCCCCC-CCCCCCc
Q psy15407 500 ECTPGFSGVNCTVNVDDCVN--HMCQNGGTCVDGINDYTCKCEGDFVG---KFCEIAPFVAMMYPQTSPCQH-HDCKNGI 573 (604)
Q Consensus 500 ~C~~g~~g~~c~~~~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~G---~~C~~~~~~~~~~~~~~~C~~-~~C~~g~ 573 (604)
....||.|..| ++++|.. ..|. ++|++..++|+|.|++||+| ..|+. +++|.. ..|. +.
T Consensus 17 ~~~~~~~~~~C--d~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~d----------ideC~~~~~C~-~~ 81 (107)
T 2w2n_E 17 TTENLYFQGAM--GTNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCED----------IDECQDPDTCS-QL 81 (107)
T ss_dssp ---CCCCSCCB--SCCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEEC------------------------
T ss_pred ccCCCcCCCCC--cCccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCcccc----------ccccCCCCCcC-Ce
Confidence 35678999999 5788875 3575 59999999999999999998 67763 577763 5676 56
Q ss_pred eeCCCCCCCeeeecCCCCcCCC
Q psy15407 574 CFQPQGSNDYLCKCAPGYSGKE 595 (604)
Q Consensus 574 C~~~~g~~~~~C~C~~G~~G~~ 595 (604)
|+++. ++|+|.|++||.|..
T Consensus 82 C~n~~--gsy~C~C~~Gy~~~~ 101 (107)
T 2w2n_E 82 CVNLE--GGYKCQCEEGFQLDP 101 (107)
T ss_dssp ----------------------
T ss_pred eecCC--CCEEEECCCCceECC
Confidence 99998 789999999999653
No 197
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=98.89 E-value=6.5e-10 Score=103.76 Aligned_cols=62 Identities=34% Similarity=0.920 Sum_probs=46.3
Q ss_pred CCCCCCCCEEeeCCCCeEeeeCCC------CccCCCCcCcccccCCCCCCCCCCC---CCCC---CceeCCCCCCCeeee
Q psy15407 519 NHMCQNGGTCVDGINDYTCKCEGD------FVGKFCEIAPFVAMMYPQTSPCQHH---DCKN---GICFQPQGSNDYLCK 586 (604)
Q Consensus 519 ~~~C~~~~~C~~~~~~y~C~C~~G------~~G~~C~~~~~~~~~~~~~~~C~~~---~C~~---g~C~~~~g~~~~~C~ 586 (604)
..+|.++|+|+.. +|.|.+| |+|..|+.. ...|... .|.+ |.|... +|.
T Consensus 142 ~~~Csg~G~C~~g----~C~C~~gw~~~~~~~G~~Ce~~---------~~~C~~~~g~~C~~~~~G~C~~g------~C~ 202 (217)
T 2p28_B 142 SIICSGLGDCVCG----QCLCHTSDVPGKLIYGQYCECD---------TINCERYNGQVCGGPGRGLCFCG------KCR 202 (217)
T ss_dssp SCBGGGTEEEETT----EEEECCCCSTTCCEESTTSCEE---------SSCSCEETTEETTCTTTEEEETT------EEE
T ss_pred CCCCCCCCEEeCC----ceECCCCCCCcccEECCCcccC---------CccCCCCCCCCCCCCCCcEEeCC------eeE
Confidence 3579999999953 8999999 689999853 2344432 3554 458842 699
Q ss_pred cCCCCcCCCCCCC
Q psy15407 587 CAPGYSGKESLLQ 599 (604)
Q Consensus 587 C~~G~~G~~C~~~ 599 (604)
|.+||+|..|+..
T Consensus 203 C~~G~~G~~C~~~ 215 (217)
T 2p28_B 203 CHPGFEGSACQHH 215 (217)
T ss_dssp ECTTEESTTSCEE
T ss_pred CCCCCccCCcCCC
Confidence 9999999999864
No 198
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.87 E-value=3.5e-09 Score=118.13 Aligned_cols=164 Identities=26% Similarity=0.648 Sum_probs=118.0
Q ss_pred CCCCCCeeecCCCCceee----eCCCCCcCCCCcccCCCCCCC--CCCCCCeeeeCCCCceEee----CCCCCcCCCCCc
Q psy15407 365 PCTNQGVCEPLPERQYQC----RCTPGYHGQHCEFMIDACYGN--PCRNSGTCKLLEEGRFNCE----CAPGYTGDRCEI 434 (604)
Q Consensus 365 ~C~~~g~C~~~~~~~~~C----~C~~g~~G~~c~~~~~~C~~~--~C~~~~~C~~~~~~~~~C~----C~~g~~g~~C~~ 434 (604)
.|.+ |.|+.. .+.| .|..|..+..|. ...|... .|. ++.|+. +++.|. |..|.-+..|.
T Consensus 182 ~C~~-g~Ci~~---~~~CDg~~dC~dgsDE~~C~--~~~C~~~~f~C~-~g~Ci~---~~~~Cdg~~dC~dgsde~~C~- 250 (699)
T 1n7d_A 182 HCLS-GECIHS---SWRCDGGPDCKDKSDEENCA--VATCRPDEFQCS-DGNCIH---GSRQCDREYDCKDMSDEVGCV- 250 (699)
T ss_dssp CCSS-SCCCST---TCTTSSSCCSTTSCSSCSCC--CCCCCSSEEESS-SSCEEE---TTCCSSSCCCSSSSCSSSSTT-
T ss_pred ecCC-CceEec---hhccCCCCCCCCCcccccCC--CcccCCCcEecC-CCceee---eecccCCCCCCCCCCccCCCC-
Confidence 4654 477753 4677 788888777775 2345433 465 467875 356775 88888777886
Q ss_pred CCCcCC---CCCCCCCcEEEeCCC--CeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc---
Q psy15407 435 NIDDCL---SHKCENNATCVDLIQ--AYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS--- 506 (604)
Q Consensus 435 ~~~~C~---~~~C~~~~~C~~~~~--~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~--- 506 (604)
.+..|. ...|.+ +.|++... .+.+.|..|+.+..++-++++|......|. +.|+++.++|+|.|++||.
T Consensus 251 ~~~~C~~~~~~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~~~~ 327 (699)
T 1n7d_A 251 NVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVA 327 (699)
T ss_dssp CCCCCCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSC--TTCCCCTTCCCCCCCSSSCCCS
T ss_pred CCCcccCCCceecCC-CcEeCCcccccccceecCcccccccccccccccccccCcC--CCcccCCCCcEEeCCCCeEcCC
Confidence 355663 245755 67865422 345778888776544446778876656675 5799999999999999998
Q ss_pred CCcCcccCCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407 507 GVNCTVNVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVG 545 (604)
Q Consensus 507 g~~c~~~~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~G 545 (604)
|..|+ ++++|. ..+|.+ .|+++.|+|+|.|++||.+
T Consensus 328 ~~~C~-dideC~~~~~C~~--~C~n~~g~y~C~C~~G~~~ 364 (699)
T 1n7d_A 328 QRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQL 364 (699)
T ss_dssp SSCCC-CCCCCSSSSSCTT--TCCBCSSCBCCCCCSSCBC
T ss_pred CCccc-CccccCCCCcccc--ccccCCCCeeeeeeccccc
Confidence 77887 899997 567864 8999999999999999984
No 199
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=98.85 E-value=1.8e-09 Score=76.41 Aligned_cols=45 Identities=31% Similarity=0.758 Sum_probs=37.5
Q ss_pred CCcCcccCCCCCCCCCCCCCEE-----eeCCCCeEeeeCCCCccCCCCcC
Q psy15407 507 GVNCTVNVDDCVNHMCQNGGTC-----VDGINDYTCKCEGDFVGKFCEIA 551 (604)
Q Consensus 507 g~~c~~~~~~C~~~~C~~~~~C-----~~~~~~y~C~C~~G~~G~~C~~~ 551 (604)
|..|.+++++|.++||.++|+| ++..++|+|.|++||+|.+||..
T Consensus 1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~ 50 (55)
T 3u7u_G 1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY 50 (55)
T ss_dssp --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence 5678889999999999999999 46778999999999999999864
No 200
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=98.85 E-value=1.2e-09 Score=117.52 Aligned_cols=163 Identities=20% Similarity=0.378 Sum_probs=62.9
Q ss_pred eeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCc--CCCCCcCCCcCCCCCCCCCcEEEeCCCCe
Q psy15407 380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYT--GDRCEINIDDCLSHKCENNATCVDLIQAY 457 (604)
Q Consensus 380 ~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~--g~~C~~~~~~C~~~~C~~~~~C~~~~~~~ 457 (604)
.-+.|..||.|..|+.-.......++.... + ......|.|...+. +..|...... ....+.....|.....++
T Consensus 344 ~C~~C~~g~~G~~Ce~C~~g~~~~~~~~~~-~---~~~~~~C~C~~~~~~~~~~C~~~~~~-~~~~~~~~C~C~~g~~G~ 418 (525)
T 4aqs_A 344 VCDNCQHNTMGRNCEQCKPFYFQHPERDIR-D---PNLCEPCTCDPAGSENGGICDGYTDF-SVGLIAGQCRCKLHVEGE 418 (525)
T ss_dssp EEESCCTTEESTTSCEECTTEEECSSSCTT-C---TTCEEECCCCTTTBSGGGCCCCSCBG-GGTBCSSCCCBCTTEETT
T ss_pred cccCCCCCCCCCCcccccCcccccCCCCCC-C---CCCCcCCCCCCCCCCCCccccCCCCC-CcCCCCCccCCCCCCCCC
Confidence 345788888888887543333333322111 0 12233455554443 3344321111 111111222333333344
Q ss_pred EE-ecCCCCCCCCcccCCCcCCCCCCCCCCCCceeec----CCCeEEecCCCCcCCcCc----------ccCCCCCCCCC
Q psy15407 458 EC-RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDH----FSHYTCECTPGFSGVNCT----------VNVDDCVNHMC 522 (604)
Q Consensus 458 ~C-~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~----~~~~~C~C~~g~~g~~c~----------~~~~~C~~~~C 522 (604)
.| .|.+||.|..|+ ....|.. ..|.+++.|.+. ..++.|.|++||+|..|+ .+++.|...+|
T Consensus 419 ~C~~C~~Gy~G~~c~-~~~~C~~--C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C 495 (525)
T 4aqs_A 419 RCDVCKEGFYDLSAE-DPYGCKS--CACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDC 495 (525)
T ss_dssp TTCEECTTEECCCTT-STTSSEE--CCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC--------------------
T ss_pred cccCCCCCCcCCCCC-CCCCCcc--CCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCC
Confidence 56 688888887775 3334432 245444444322 235689999999999996 24567887788
Q ss_pred CCCCEEeeC--CCCeEeeeCCCCccCCCCc
Q psy15407 523 QNGGTCVDG--INDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 523 ~~~~~C~~~--~~~y~C~C~~G~~G~~C~~ 550 (604)
.++|.|... ..+++|.|++||+|.+|+.
T Consensus 496 ~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq 525 (525)
T 4aqs_A 496 DLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525 (525)
T ss_dssp ------------------------------
T ss_pred CCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence 888776543 2345899999999999973
No 201
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=4.3e-11 Score=123.22 Aligned_cols=170 Identities=14% Similarity=0.013 Sum_probs=115.0
Q ss_pred CCCCCCccCcEEecCCCcceeecCCC---ccC-CCCCCcEEeCCCCcceecCCCcC-CCcccCCcCCCCCCCCCcccccc
Q psy15407 109 IPKDIPLYTTELILNDNEIGKIKSDG---LFG-RLPNLIKLDLRRNQVTGIEDNAF-EGENDQGCLGDNYCPPKCTCTVR 183 (604)
Q Consensus 109 iP~~l~~~~~~L~L~~N~i~~i~~~~---~f~-~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~l~~~~~~~~~~l~ 183 (604)
++..+...++.|+|++|.|+...... ++. ..++|++|+|++|.|+......+ ..+.+|+.|+|++|.+.....
T Consensus 66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-- 143 (372)
T 3un9_A 66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-- 143 (372)
T ss_dssp HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH--
T ss_pred HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH--
Confidence 33344566789999999997654321 122 33799999999999876433333 346677888888765421100
Q ss_pred EEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCC----CCCCCCCCCeEEecCCcceeee---
Q psy15407 184 VLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNF----TFSPLSKLSQLILSYNKLQCID--- 256 (604)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~Ls~N~l~~i~--- 256 (604)
..+.........+|+.|+|++|.|+..... .+..+++|++|+|++|.|+...
T Consensus 144 ---------------------~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 144 ---------------------KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp ---------------------HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred ---------------------HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence 000000000123799999999999764322 3467889999999999998643
Q ss_pred -ccccCCCCcccEEEccCCccccCCcc----cccCcccceeeeccCCCcc
Q psy15407 257 -RDALAGLKSLRIISLHGNDISMIPEG----AFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 257 -~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~Npl~ 301 (604)
..++...++|+.|+|++|.|+..... ++...++|++|+|++|++.
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 45567788999999999999865432 2345688999999999885
No 202
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=98.77 E-value=4.9e-09 Score=105.51 Aligned_cols=71 Identities=30% Similarity=0.760 Sum_probs=35.6
Q ss_pred CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCC-CCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407 473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHM-CQNGGTCVDGINDYTCKCEGDFVG 545 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~-C~~~~~C~~~~~~y~C~C~~G~~G 545 (604)
++++|.. ++|.++++|++..++|+|.|++||+|..|+.++++|...+ -.-...|++..++|+|.|++||.|
T Consensus 4 d~~~C~~--~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~ 75 (317)
T 3h5c_B 4 GGSPCIS--QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRL 75 (317)
T ss_dssp --CCTTS--CCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEEC
T ss_pred cCCcCCC--CCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcCccccCCCeeEEeccccccc
Confidence 3455543 3455555555555555555555555555555555554321 222235555555555555555554
No 203
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=98.74 E-value=4.1e-09 Score=74.53 Aligned_cols=44 Identities=23% Similarity=0.509 Sum_probs=23.1
Q ss_pred CCCCcCCCcCCCCCCCCCcEEE-----eCCCCeEEecCCCCCCCCcccC
Q psy15407 430 DRCEINIDDCLSHKCENNATCV-----DLIQAYECRCAPGFQGEFCQTK 473 (604)
Q Consensus 430 ~~C~~~~~~C~~~~C~~~~~C~-----~~~~~~~C~C~~g~~g~~C~~~ 473 (604)
..|++++++|...||.++|+|. +..++|.|.|++||+|..|+..
T Consensus 2 ~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~ 50 (55)
T 3u7u_G 2 TSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY 50 (55)
T ss_dssp -CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred CCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence 4455555555555565555652 3445555666666666555543
No 204
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=98.74 E-value=8.4e-09 Score=103.78 Aligned_cols=74 Identities=32% Similarity=0.791 Sum_probs=66.0
Q ss_pred cCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCC-CCCCCCCCceeecCCCeEEecCCCCcCCc
Q psy15407 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE-YNPCRNGARCLDHFSHYTCECTPGFSGVN 509 (604)
Q Consensus 434 ~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~-~~~C~~~~~C~~~~~~~~C~C~~g~~g~~ 509 (604)
.++++|...||.++++|++..++|.|.|++||.|..|+.++++|... .++|.+ .|++..++|+|.|++||+|..
T Consensus 3 ~d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~~ 77 (317)
T 3h5c_B 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGE 77 (317)
T ss_dssp ---CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECCT
T ss_pred ccCCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEeccccccccc
Confidence 37899999999999999999999999999999999999999999863 378986 899999999999999999854
No 205
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.63 E-value=5.5e-10 Score=122.70 Aligned_cols=75 Identities=20% Similarity=0.090 Sum_probs=41.9
Q ss_pred CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceec-CCCcCCCcccCCcCCCC
Q psy15407 97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI-EDNAFEGENDQGCLGDN 172 (604)
Q Consensus 97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~l~ 172 (604)
+.+++++.....+|..+ ...+++|+|++|.|+......++..+++|++|+|+ |.+... .+..+..+++|+.|+++
T Consensus 273 ~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 45666665555555543 34567788887776433221225677777777777 333321 12223445667777776
No 206
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=3.2e-07 Score=95.23 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=58.2
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 296 (604)
+|+.+.|..+ ++.|...+|.++.+|+.++|..+ ++.|...+|.++.+|+.++|..| |+.|...+|....+|+.|.|.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 5566666543 77777778888888888887643 77787788888888888888766 777877788877788877776
Q ss_pred CC
Q psy15407 297 GN 298 (604)
Q Consensus 297 ~N 298 (604)
.+
T Consensus 375 ~~ 376 (394)
T 4fs7_A 375 KR 376 (394)
T ss_dssp GG
T ss_pred CC
Confidence 44
No 207
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.62 E-value=3.4e-08 Score=110.86 Aligned_cols=123 Identities=20% Similarity=0.477 Sum_probs=71.2
Q ss_pred ecCCCCCCCCcccCCCcCC-CCCCCCCCCCceeecCC--CeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeE
Q psy15407 460 RCAPGFQGEFCQTKTPFCA-GEYNPCRNGARCLDHFS--HYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYT 536 (604)
Q Consensus 460 ~C~~g~~g~~C~~~~~~C~-~~~~~C~~~~~C~~~~~--~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~ 536 (604)
.|..|..+..|. ....|. .....|.+ +.|++... .+.+.|..|+.+...+-++++|...+..-...|+++.++|+
T Consensus 257 dC~dgsDE~~C~-~~~~C~~~~~~~C~~-G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~~~y~ 334 (791)
T 3m0c_C 257 DCKDMSDEVGCV-NVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 334 (791)
T ss_dssp -----------------CCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECSBSEE
T ss_pred ccccccccCccc-ccccccCCCccccCC-CcccccccccCCccccccccCccccccccccccccccCccccccCCCCCcc
Confidence 466666666664 233453 23346765 57775432 24567888876544322456665432111248999999999
Q ss_pred eeeCCCCc---cCCCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeecCCCCcC----CCCC
Q psy15407 537 CKCEGDFV---GKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKCAPGYSG----KESL 597 (604)
Q Consensus 537 C~C~~G~~---G~~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C~~G~~G----~~C~ 597 (604)
|.|++||. |..|+. +++|. ...|.+ .|+++. ++|+|.|++||.+ +.|.
T Consensus 335 C~C~~Gy~l~~g~~C~d----------ideC~~~~~C~~-~C~n~~--gsy~C~C~~Gy~l~~~~~~C~ 390 (791)
T 3m0c_C 335 CLCPDGFQLVAQRRCED----------IDECQDPDTCSQ-LCVNLE--GGYKCQCEEGFQLDPHTKACK 390 (791)
T ss_dssp EECCTTCEEETTTEEEC----------CCCCSSSSSCTT-TCCBCS--SCBCCCCCSSEECCSSCCCCE
T ss_pred cCCCCCCccCCCCcccc----------CcccCCCCCCCC-eeecCC--CCceeecCCCCEeCCCCceee
Confidence 99999996 777764 56775 334543 599999 7899999999964 5564
No 208
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.61 E-value=2.3e-08 Score=112.27 Aligned_cols=160 Identities=26% Similarity=0.626 Sum_probs=73.9
Q ss_pred CeeecCCCCceee----eCCCCCcCCCCcccCCCCCC--CCCCCCCeeeeCCCCceEe----eCCCCCcCCCCCcCCCcC
Q psy15407 370 GVCEPLPERQYQC----RCTPGYHGQHCEFMIDACYG--NPCRNSGTCKLLEEGRFNC----ECAPGYTGDRCEINIDDC 439 (604)
Q Consensus 370 g~C~~~~~~~~~C----~C~~g~~G~~c~~~~~~C~~--~~C~~~~~C~~~~~~~~~C----~C~~g~~g~~C~~~~~~C 439 (604)
|.|+.. .+.| .|..|..+..|.. ..|.. ..|.+ +.|+. +.+.| .|..|.-+..|. .+.+|
T Consensus 204 g~Ci~~---~~~CDg~~dC~dgsDE~~C~~--~~C~~~~f~C~~-g~Ci~---~~~~Cdg~~dC~dgsDE~~C~-~~~~C 273 (791)
T 3m0c_C 204 GECIHS---SWRCDGGPDCKDKSDEENCAV--ATCRPDEFQCSD-GNCIH---GSRQCDREYDCKDMSDEVGCV-NVTLC 273 (791)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred Cceecc---ccccCCCCCCCCCCCCCCccc--cccCCCcceecC-CceEe---cceecCChhccccccccCccc-ccccc
Confidence 455532 3455 5555555555531 12321 22432 35543 34455 577777777776 34556
Q ss_pred C---CCCCCCCcEEEeCCC--CeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc---CCcCc
Q psy15407 440 L---SHKCENNATCVDLIQ--AYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS---GVNCT 511 (604)
Q Consensus 440 ~---~~~C~~~~~C~~~~~--~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~---g~~c~ 511 (604)
. ..+|.+ |.|++... .+.+.|..|+.+..++-.+++|......|. ..|+++.++|+|.|++||. |..|+
T Consensus 274 ~~~~~~~C~~-G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~--~~C~~~~~~y~C~C~~Gy~l~~g~~C~ 350 (791)
T 3m0c_C 274 EGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQRRCE 350 (791)
T ss_dssp CSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCS--SEEEECSBSEEEECCTTCEEETTTEEE
T ss_pred cCCCccccCC-CcccccccccCCccccccccCccccccccccccccccCcc--ccccCCCCCcccCCCCCCccCCCCccc
Confidence 4 245765 67876432 345678888766543334566765444554 4899999999999999995 78886
Q ss_pred ccCCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407 512 VNVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVG 545 (604)
Q Consensus 512 ~~~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~G 545 (604)
++++|. ..+|. +.|+++.|+|+|.|++||.+
T Consensus 351 -dideC~~~~~C~--~~C~n~~gsy~C~C~~Gy~l 382 (791)
T 3m0c_C 351 -DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQL 382 (791)
T ss_dssp -CCCCCSSSSSCT--TTCCBCSSCBCCCCCSSEEC
T ss_pred -cCcccCCCCCCC--CeeecCCCCceeecCCCCEe
Confidence 899997 34565 48999999999999999974
No 209
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=98.60 E-value=4.1e-08 Score=64.75 Aligned_cols=37 Identities=49% Similarity=1.023 Sum_probs=33.5
Q ss_pred cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407 513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549 (604)
Q Consensus 513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~ 549 (604)
++++|..+||.++|+|++..++|+|.|++||+|..|+
T Consensus 2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38 (39)
T ss_dssp CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence 5788988899999999998999999999999999887
No 210
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.45 E-value=5.4e-09 Score=114.72 Aligned_cols=83 Identities=11% Similarity=-0.052 Sum_probs=48.8
Q ss_pred cceeecCCCCceeeccC-CCCCCCCCCCeEEecCCcceee-eccccCCCCcccEEEcc-----------CCccccCCc-c
Q psy15407 217 STMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYNKLQCI-DRDALAGLKSLRIISLH-----------GNDISMIPE-G 282 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L~~L~Ls-----------~N~l~~i~~-~ 282 (604)
+|++|+|++|.++.... ..+..+++|++|+|+ |.+... .+..+..+++|++|+|+ .|.++.... .
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 78888888887654332 235677888888887 443322 12233456777888887 355553211 1
Q ss_pred cccCcccceeeeccCCCc
Q psy15407 283 AFADLHAITHLAIGGNPL 300 (604)
Q Consensus 283 ~f~~l~~L~~L~L~~Npl 300 (604)
.+..+++|+.|+|+.|.+
T Consensus 373 l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp HHHHCTTCSEEEEEESCC
T ss_pred HHhhCccCeEEEeecCCc
Confidence 234466777777755554
No 211
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=98.43 E-value=2.3e-07 Score=61.04 Aligned_cols=37 Identities=43% Similarity=0.977 Sum_probs=24.7
Q ss_pred CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcc
Q psy15407 435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471 (604)
Q Consensus 435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 471 (604)
++++|...||.++++|++..++|.|.|++||+|..|+
T Consensus 2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38 (39)
T ss_dssp CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence 4566666667666677666666777777777666664
No 212
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.39 E-value=1.5e-06 Score=89.52 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=89.6
Q ss_pred ccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCc
Q psy15407 135 LFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNY 214 (604)
Q Consensus 135 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (604)
.|....+|+.+.+..+ ++.|...+|.+...|+.+.+..+ . ..+.......
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~----------------v-------------~~I~~~aF~~ 261 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN----------------V-------------TSIGSFLLQN 261 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT----------------C-------------CEECTTTTTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC----------------c-------------cEeCccccce
Confidence 3677777887777544 67777777777766655443321 0 0000000000
Q ss_pred cccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeee
Q psy15407 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLA 294 (604)
Q Consensus 215 ~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 294 (604)
..+|+.+.|.. .++.+...+|.++.+|+.+.|.++.|+.|...+|.+..+|+.+.|..+ ++.|...+|....+|+.|.
T Consensus 262 ~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 12455556643 477788888888888888888888888888888888888888888654 8888888888888888887
Q ss_pred ccCC
Q psy15407 295 IGGN 298 (604)
Q Consensus 295 L~~N 298 (604)
|..+
T Consensus 340 ip~~ 343 (379)
T 4h09_A 340 YPKS 343 (379)
T ss_dssp CCTT
T ss_pred ECCc
Confidence 7544
No 213
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.38 E-value=3.3e-09 Score=116.44 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=56.5
Q ss_pred cceeecCCCCceeeccCCCCCC-CCCCCeEEecCCcceeeecccc-CCCCcccEEEccCCccccCCc-ccccCcccceee
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSP-LSKLSQLILSYNKLQCIDRDAL-AGLKSLRIISLHGNDISMIPE-GAFADLHAITHL 293 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~-l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L 293 (604)
+|+.|+|++ .|+......+.. +++|++|+|++|.|+......+ .++++|+.|+|++|.++.... ..+..+++|+.|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 677888866 554433323333 6788888888888765544444 557888888998888854332 234557888888
Q ss_pred eccCCCc
Q psy15407 294 AIGGNPL 300 (604)
Q Consensus 294 ~L~~Npl 300 (604)
+|++|++
T Consensus 512 ~l~~~~~ 518 (594)
T 2p1m_B 512 WMSSCSV 518 (594)
T ss_dssp EEESSCC
T ss_pred eeeCCCC
Confidence 8888887
No 214
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.35 E-value=3e-07 Score=95.56 Aligned_cols=67 Identities=25% Similarity=0.696 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCEEeeCCCCeEeeeCCCCc---cCCCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeecCCC
Q psy15407 515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFV---GKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKCAPG 590 (604)
Q Consensus 515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~---G~~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C~~G 590 (604)
++|...+|..++.|++++++|+|.|++||. |..|+. .++|. ...|.+ .|+++. ++|+|.|.+|
T Consensus 1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~d----------ideC~~~~~C~~-~C~n~~--g~~~C~C~~g 67 (400)
T 3p5b_L 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED----------IDECQDPDTCSQ-LCVNLE--GGYKCQCEEG 67 (400)
T ss_dssp CCTTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCEEE----------CCCCSTTSSCSS-CCBCCS--SSCBCCCCTT
T ss_pred CcccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCcccC----------chhhhccCCCCC-ccCCCc--cceeeecccc
Confidence 467766766677999999999999999998 778864 67776 356765 699998 7899999999
Q ss_pred CcCC
Q psy15407 591 YSGK 594 (604)
Q Consensus 591 ~~G~ 594 (604)
|.+.
T Consensus 68 ~~~~ 71 (400)
T 3p5b_L 68 FQLD 71 (400)
T ss_dssp CCCC
T ss_pred cccc
Confidence 9853
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=7.4e-09 Score=100.33 Aligned_cols=77 Identities=25% Similarity=0.278 Sum_probs=43.7
Q ss_pred cceeecCCCCceeeccC--CCCCCCCCCCeEEecCCcceeee-ccccCCCCcccEEEccCCcccc-CCc------ccccC
Q psy15407 217 STMYRDLSNNQIGFLSN--FTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRIISLHGNDISM-IPE------GAFAD 286 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~--~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~-i~~------~~f~~ 286 (604)
+|+.|+|++|+|+.+.. ..+..+++|+.|+|++|+|+.+. ...+..+ +|++|+|++|.|.. ++. .++..
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHH
Confidence 56666777777766543 34445666777777777766652 1223333 66677777776653 221 23445
Q ss_pred cccceeee
Q psy15407 287 LHAITHLA 294 (604)
Q Consensus 287 l~~L~~L~ 294 (604)
+++|+.||
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 55555554
No 216
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.33 E-value=2.6e-06 Score=88.31 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=70.2
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 296 (604)
.|+.+.|. +.++.|+..+|.++.+|+.+.|..+ ++.|...+|.++.+|+.|.|..+ ++.|...+|....+|+.+++.
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 56677774 6688899999999999999999864 89999999999999999999654 899999999999999999999
Q ss_pred CCCc
Q psy15407 297 GNPL 300 (604)
Q Consensus 297 ~Npl 300 (604)
+|..
T Consensus 366 ~~~~ 369 (394)
T 4gt6_A 366 GSRS 369 (394)
T ss_dssp SCHH
T ss_pred Ccee
Confidence 8754
No 217
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.33 E-value=7.5e-08 Score=99.62 Aligned_cols=74 Identities=19% Similarity=0.539 Sum_probs=20.3
Q ss_pred cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCc----cCCCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeec
Q psy15407 513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFV----GKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKC 587 (604)
Q Consensus 513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~----G~~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C 587 (604)
++++|..+++...+.|.+..|+|+|.|++||+ |..|+. .++|. ...|.++ |+++. ++|+|.|
T Consensus 2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d----------~~eC~~~~~C~~~-C~~~~--g~~~C~C 68 (386)
T 3v65_B 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQD----------VNECAEEGYCSQG-CTNSE--GAFQCWC 68 (386)
T ss_dssp ------------------------------------------------------------CCTTE-EC-------CCEEC
T ss_pred CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCc----------cceeCCcCcccCc-CCCCC--CCCeEEE
Confidence 57888876654445899889999999999998 888864 67785 5678765 99999 7899999
Q ss_pred CCCCc----CCCCCCC
Q psy15407 588 APGYS----GKESLLQ 599 (604)
Q Consensus 588 ~~G~~----G~~C~~~ 599 (604)
++||. |+.|+..
T Consensus 69 ~~g~~l~~d~~~C~~~ 84 (386)
T 3v65_B 69 EAGYELRPDRRSCKAL 84 (386)
T ss_dssp CTTEEECTTSSCEEEC
T ss_pred CCCceEcCCCCeECCc
Confidence 99998 8888753
No 218
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.32 E-value=2.3e-06 Score=88.69 Aligned_cols=72 Identities=15% Similarity=0.300 Sum_probs=58.0
Q ss_pred CceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407 226 NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNP 299 (604)
Q Consensus 226 N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np 299 (604)
+.+..+...+|.++.+|+.+.|..+ +..|...+|.+..+|+.+.|..| ++.|...+|.....|+.+.+..+.
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 4455677788999999999998754 67788889999899999988776 888888888888888888777654
No 219
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.31 E-value=3.4e-07 Score=95.10 Aligned_cols=67 Identities=34% Similarity=0.850 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCeeeeCCCCceEeeCCCCCc---CCCCCcCCCcCC-CCCCCCCcEEEeCCCCeEEecCCCCCCC
Q psy15407 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYT---GDRCEINIDDCL-SHKCENNATCVDLIQAYECRCAPGFQGE 468 (604)
Q Consensus 398 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~---g~~C~~~~~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 468 (604)
++|..++|.+.+.|.+ ..++|.|.|++||+ |..|+ ++++|. +.+|.+ .|+++.++|.|.|.+||.+.
T Consensus 1 ~eC~~~~~~c~~~C~~-~~~~y~C~C~~G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~g~~~C~C~~g~~~~ 71 (400)
T 3p5b_L 1 NECLDNNGGCSHVCND-LKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLD 71 (400)
T ss_dssp CCTTTTGGGCSSEEEE-CSSSEEEECCTTEEECSSSCEE-ECCCCSTTSSCSS--CCBCCSSSCBCCCCTTCCCC
T ss_pred CcccCCCCCCCCEeEC-CCCCeEEECCCCCCcCCCCccc-CchhhhccCCCCC--ccCCCccceeeecccccccc
Confidence 5788888888888887 46788889988887 77886 888887 467764 88888888888888888865
No 220
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=98.31 E-value=7e-08 Score=101.60 Aligned_cols=78 Identities=28% Similarity=0.773 Sum_probs=34.0
Q ss_pred EecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCc-eeCC
Q psy15407 499 CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGI-CFQP 577 (604)
Q Consensus 499 C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~-C~~~ 577 (604)
+.|..+|.|..|+ .++|.. +|.+ |+|+.. ++|.|++||+|..|+. ..|.. .|.|++ |++.
T Consensus 379 ~~C~~~~~g~~c~--~~~C~~-~C~n-G~C~~~---~~C~C~~G~~G~~C~~-----------~~C~~-~C~~~g~C~~~ 439 (463)
T 2wg3_C 379 EECRATVQPAQTL--TSECSR-LCRN-GYCTPT---GKCCCSPGWEGDFCRT-----------AKCEP-ACRHGGVCVRP 439 (463)
T ss_dssp GGGCCCCCCCCCC--CCHHHH-HCCS-EEECTT---SCEEECTTEESTTSCE-----------ECC--------------
T ss_pred ccCCCCCcCCCCc--cccccC-CCCC-CccCCC---CeECCCCCcCCCcCCc-----------CcCCC-CCCCCCEECCC
Confidence 4677888888775 356754 5876 788753 3788888888888873 24554 676654 8753
Q ss_pred CCCCCeeeecCCCCcCCCCCCCc
Q psy15407 578 QGSNDYLCKCAPGYSGKESLLQQ 600 (604)
Q Consensus 578 ~g~~~~~C~C~~G~~G~~C~~~~ 600 (604)
++|.|++||+|..||..+
T Consensus 440 -----~~C~C~~G~~G~~C~~~~ 457 (463)
T 2wg3_C 440 -----NKCLCKKGYLGPQCEQVD 457 (463)
T ss_dssp -----------------------
T ss_pred -----CEEECCCCcccCCCCCCc
Confidence 468888888888888754
No 221
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=9.5e-08 Score=98.85 Aligned_cols=53 Identities=25% Similarity=0.806 Sum_probs=9.7
Q ss_pred ceeecCCCeEEecCCCCc----CCcCcccCCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407 489 RCLDHFSHYTCECTPGFS----GVNCTVNVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFV 544 (604)
Q Consensus 489 ~C~~~~~~~~C~C~~g~~----g~~c~~~~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~ 544 (604)
.|.+..++|+|.|++||+ |..| .++++|. ..+|.+ .|+++.|+|+|.|++||.
T Consensus 16 ~C~~~~g~~~C~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~ 73 (386)
T 3v65_B 16 KCQMIRGAVQCTCHTGYRLTEDGRTC-QDVNECAEEGYCSQ--GCTNSEGAFQCWCEAGYE 73 (386)
T ss_dssp -------------------------------------CCTT--EEC-----CCEECCTTEE
T ss_pred CCcCCCCCcEeECCCCceECCCCCcc-CccceeCCcCcccC--cCCCCCCCCeEEECCCce
Confidence 455555555566666655 5555 3555564 345554 266666666666666665
No 222
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=98.30 E-value=2.8e-07 Score=67.88 Aligned_cols=49 Identities=33% Similarity=0.697 Sum_probs=39.9
Q ss_pred cccCCCCcCCCCCCCCeeecC----CCCceeeeCCCCCcCCCCcccCCCCCCC
Q psy15407 355 LSKCNACYKSPCTNQGVCEPL----PERQYQCRCTPGYHGQHCEFMIDACYGN 403 (604)
Q Consensus 355 ~~~c~~C~~~~C~~~g~C~~~----~~~~~~C~C~~g~~G~~c~~~~~~C~~~ 403 (604)
..+|++|..+||.|+|+|+.. ..+.|.|.|++||+|..|+.++++|...
T Consensus 3 ~~~c~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~~~ 55 (63)
T 1hae_A 3 LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQN 55 (63)
T ss_dssp EEECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSCTT
T ss_pred cCccCCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCccccc
Confidence 356788989999999999862 3467999999999999999888877653
No 223
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.27 E-value=3.2e-06 Score=87.01 Aligned_cols=139 Identities=22% Similarity=0.224 Sum_probs=105.7
Q ss_pred cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccc
Q psy15407 116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY 195 (604)
Q Consensus 116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~ 195 (604)
.++.+.+..+ +..|.. .+|.+..+|+.+.|..+ ++.|...+|.+..+|+.+.+... .
T Consensus 218 ~l~~i~~~~~-~~~i~~-~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~----------------i---- 274 (379)
T 4h09_A 218 NLKKITITSG-VTTLGD-GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK----------------V---- 274 (379)
T ss_dssp SCSEEECCTT-CCEECT-TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC----------------C----
T ss_pred ccceeeeccc-eeEEcc-ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc----------------c----
Confidence 4566666544 677765 45899999999999876 88999999998887765544321 0
Q ss_pred cccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCc
Q psy15407 196 IAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND 275 (604)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~ 275 (604)
..+.......-.+|+.+.|.++.|+.|...+|.++.+|+.+.|..+ ++.|...+|.+..+|+.+.|..+
T Consensus 275 ---------~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 275 ---------KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp ---------SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred ---------eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence 0001000011137889999999999999999999999999999765 99999999999999999999765
Q ss_pred cccCCcccccCcc
Q psy15407 276 ISMIPEGAFADLH 288 (604)
Q Consensus 276 l~~i~~~~f~~l~ 288 (604)
++.|...+|..-.
T Consensus 344 v~~I~~~aF~~c~ 356 (379)
T 4h09_A 344 ITLIESGAFEGSS 356 (379)
T ss_dssp CCEECTTTTTTSS
T ss_pred cCEEchhHhhCCC
Confidence 8899998887653
No 224
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=98.26 E-value=7.3e-07 Score=62.98 Aligned_cols=39 Identities=31% Similarity=0.904 Sum_probs=34.6
Q ss_pred cCCCCCCC---CCCCCCEEe--eCCCCeEeeeCCCCccCCCCcC
Q psy15407 513 NVDDCVNH---MCQNGGTCV--DGINDYTCKCEGDFVGKFCEIA 551 (604)
Q Consensus 513 ~~~~C~~~---~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~~ 551 (604)
++++|... ||.++|+|+ +..++|+|.|++||+|.+|+..
T Consensus 2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ 45 (53)
T 1egf_A 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45 (53)
T ss_dssp EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCcc
Confidence 46788776 999999999 7889999999999999999864
No 225
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.25 E-value=2.8e-08 Score=109.00 Aligned_cols=186 Identities=11% Similarity=0.011 Sum_probs=101.2
Q ss_pred CeEEcCCCCCCc-CCCCC---CccCcEEecCCC-ccee--ecCCCccCCCCCCcEEeCCCCcceecCCCcCC----Cccc
Q psy15407 97 TRVDCSQRGLKE-IPKDI---PLYTTELILNDN-EIGK--IKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE----GEND 165 (604)
Q Consensus 97 ~~l~cs~~~L~~-iP~~l---~~~~~~L~L~~N-~i~~--i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~----~l~~ 165 (604)
+.|+++++.++. .+..+ .+.+++|+|+++ .++. ++ .++..+++|++|+|++|.|+......+. .+++
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~--~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA--AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH--HHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH--HHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 788998888763 22222 357899999988 5655 33 2355789999999999998876554443 5568
Q ss_pred CCcCCCCCCC--CC---------ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecC-------CCCc
Q psy15407 166 QGCLGDNYCP--PK---------CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL-------SNNQ 227 (604)
Q Consensus 166 L~~L~l~~~~--~~---------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L-------s~N~ 227 (604)
|+.|+++++. .. ....++.+.+..+.... .+..+.... .+|+.|++ +.|.
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-----------~l~~~~~~~-~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-----------KLATLLQRA-PQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-----------HHHHHHHHC-TTCSEEECSBCCCCCCHHH
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-----------HHHHHHhcC-CcceEcccccccCccchhh
Confidence 8888888764 10 00122222222110000 000000001 13444442 2222
Q ss_pred eeeccCCCCCCCCCCCeE-EecCCcceeeeccccCCCCcccEEEccCCccccCC-cccccCcccceeeeccCC
Q psy15407 228 IGFLSNFTFSPLSKLSQL-ILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP-EGAFADLHAITHLAIGGN 298 (604)
Q Consensus 228 i~~l~~~~f~~l~~L~~L-~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~N 298 (604)
+..+.. .|.++++|+.| .+.......+ +..+..+++|++|+|++|.|+... ...+..+++|+.|+|++|
T Consensus 254 ~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 254 YSGLSV-ALSGCKELRCLSGFWDAVPAYL-PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHH-HHHTCTTCCEEECCBTCCGGGG-GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHH-HHhcCCCcccccCCcccchhhH-HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 333332 34455555555 3333222222 222335688999999999866322 223557788999999877
No 226
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=98.23 E-value=1.4e-07 Score=99.39 Aligned_cols=79 Identities=32% Similarity=0.756 Sum_probs=38.1
Q ss_pred EEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEe
Q psy15407 458 ECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTC 537 (604)
Q Consensus 458 ~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C 537 (604)
.+.|..+|.|..|+. +.|.. +|.+ ++|++. ++|.|.+||+|..|+ ++.|.. +|.++|+|+.. |+|
T Consensus 378 p~~C~~~~~g~~c~~--~~C~~---~C~n-G~C~~~---~~C~C~~G~~G~~C~--~~~C~~-~C~~~g~C~~~---~~C 442 (463)
T 2wg3_C 378 PEECRATVQPAQTLT--SECSR---LCRN-GYCTPT---GKCCCSPGWEGDFCR--TAKCEP-ACRHGGVCVRP---NKC 442 (463)
T ss_dssp CGGGCCCCCCCCCCC--CHHHH---HCCS-EEECTT---SCEEECTTEESTTSC--EECC--------------------
T ss_pred cccCCCCCcCCCCcc--ccccC---CCCC-CccCCC---CeECCCCCcCCCcCC--cCcCCC-CCCCCCEECCC---CEE
Confidence 367888999998864 56763 5886 789753 479999999999996 467877 89999999865 589
Q ss_pred eeCCCCccCCCCcC
Q psy15407 538 KCEGDFVGKFCEIA 551 (604)
Q Consensus 538 ~C~~G~~G~~C~~~ 551 (604)
.|++||+|..|+..
T Consensus 443 ~C~~G~~G~~C~~~ 456 (463)
T 2wg3_C 443 LCKKGYLGPQCEQV 456 (463)
T ss_dssp --------------
T ss_pred ECCCCcccCCCCCC
Confidence 99999999999863
No 227
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=98.19 E-value=5.7e-07 Score=61.17 Aligned_cols=40 Identities=23% Similarity=0.537 Sum_probs=31.8
Q ss_pred CCCCCC---CCCCCCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407 561 TSPCQH---HDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQ 600 (604)
Q Consensus 561 ~~~C~~---~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~ 600 (604)
+++|.. ++|.||.|....+.++|+|.|++||+|++||...
T Consensus 3 i~~C~~~~~~pC~nG~C~~~~~~~~~~C~C~~GytG~~Ce~~~ 45 (46)
T 1k36_A 3 ITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFF 45 (46)
T ss_dssp EECCCTTCCSSCSSEEEEEETTTTEEEEEECTTCSSTTSCCCC
T ss_pred cccCCCCCCCCCCCCEeeccCCCCCEEEECCCCCccCCCCccc
Confidence 456666 7899977987554468999999999999999753
No 228
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=98.16 E-value=2.2e-06 Score=60.49 Aligned_cols=39 Identities=33% Similarity=0.902 Sum_probs=24.5
Q ss_pred CCcCCCC---CCCCCcEEE--eCCCCeEEecCCCCCCCCcccCC
Q psy15407 436 IDDCLSH---KCENNATCV--DLIQAYECRCAPGFQGEFCQTKT 474 (604)
Q Consensus 436 ~~~C~~~---~C~~~~~C~--~~~~~~~C~C~~g~~g~~C~~~~ 474 (604)
+++|.+. ||.++|+|+ +..++|.|.|++||+|..|+..+
T Consensus 3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~ 46 (53)
T 1egf_A 3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46 (53)
T ss_dssp ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccC
Confidence 4556554 666666666 55666666666666666665443
No 229
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=98.16 E-value=4.3e-07 Score=65.64 Aligned_cols=38 Identities=21% Similarity=0.518 Sum_probs=34.4
Q ss_pred cCCCCCCCCCCCC--CEEeeCCCCeEeeeCCCCc-cCCCCc
Q psy15407 513 NVDDCVNHMCQNG--GTCVDGINDYTCKCEGDFV-GKFCEI 550 (604)
Q Consensus 513 ~~~~C~~~~C~~~--~~C~~~~~~y~C~C~~G~~-G~~C~~ 550 (604)
++++|..+||.++ |+|++..++|+|.|++||+ |..|+.
T Consensus 10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~~ 50 (61)
T 2k2s_B 10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGTG 50 (61)
T ss_dssp SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSSS
T ss_pred CCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCCC
Confidence 5688888999998 8999999999999999999 999975
No 230
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=2.6e-07 Score=89.49 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=62.0
Q ss_pred ecCCCCceeeccC---CCCCCCCCCCeEEecCCcceeeec--cccCCCCcccEEEccCCccccCCcccccCcc--cceee
Q psy15407 221 RDLSNNQIGFLSN---FTFSPLSKLSQLILSYNKLQCIDR--DALAGLKSLRIISLHGNDISMIPEGAFADLH--AITHL 293 (604)
Q Consensus 221 L~Ls~N~i~~l~~---~~f~~l~~L~~L~Ls~N~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~--~L~~L 293 (604)
++++.|++..++. ....++++|+.|+|++|+|+.+.. ..+..+++|+.|+|++|+|+.+.. +..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhhcccCCcceE
Confidence 6778886554432 223568899999999999999864 556789999999999999998832 44444 89999
Q ss_pred eccCCCcc
Q psy15407 294 AIGGNPLY 301 (604)
Q Consensus 294 ~L~~Npl~ 301 (604)
+|++||+.
T Consensus 226 ~L~~Npl~ 233 (267)
T 3rw6_A 226 WLDGNSLC 233 (267)
T ss_dssp ECTTSTTG
T ss_pred EccCCcCc
Confidence 99999984
No 231
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=98.16 E-value=2e-07 Score=65.62 Aligned_cols=42 Identities=31% Similarity=0.775 Sum_probs=34.7
Q ss_pred eEEecCCCCcCCcCcccCCCCCCCCCCCCCEEee----CCCCeEeeeCCCCccCCCCc
Q psy15407 497 YTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVD----GINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 497 ~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~----~~~~y~C~C~~G~~G~~C~~ 550 (604)
++|.|++||+ .+||.++|+|+. ..++|+|.|++||+|.+||.
T Consensus 3 ~~C~C~~g~~------------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~ 48 (52)
T 3ca7_A 3 PTYKCPETFD------------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (52)
T ss_dssp CCBCCCHHHH------------HHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred eeeECCCCCc------------CCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence 3588888887 347889999986 45689999999999999985
No 232
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.15 E-value=9.1e-07 Score=89.87 Aligned_cols=110 Identities=19% Similarity=0.517 Sum_probs=37.1
Q ss_pred CCCC-CeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEe-eCCCCCcCCCCCcCCCcCCCCC
Q psy15407 366 CTNQ-GVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNC-ECAPGYTGDRCEINIDDCLSHK 443 (604)
Q Consensus 366 C~~~-g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C-~C~~g~~g~~C~~~~~~C~~~~ 443 (604)
|..+ ..|.... +.+.|.|+.+++|..|+.-.......|+..++.|.......+.| .|+-++.|..|+... .+
T Consensus 299 CnGHas~C~~~~-g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~t-----~~ 372 (426)
T 3zyj_B 299 CNLHATVCVYDN-SKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL-----LH 372 (426)
T ss_dssp CSSSCSCEEEET-TEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC------------------
T ss_pred CCCchhhcCCCC-CCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccCc-----cc
Confidence 5444 4677654 56899999999999999765556666776544332222334456 345455666775332 46
Q ss_pred CCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeec
Q psy15407 444 CENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDH 493 (604)
Q Consensus 444 C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~ 493 (604)
|.++|+|.+.. .|.|++||.|..|+. -.|.++|+|...
T Consensus 373 C~ngg~C~~~~---~C~C~~G~~G~~Ce~---------c~C~~~g~C~~~ 410 (426)
T 3zyj_B 373 CQNGGTCHNNV---RCLCPAAYTGILCEK---------LRCEEAGSCGSD 410 (426)
T ss_dssp --------------------------------------------------
T ss_pred CCCCCCcCCCC---CCcCCCCCcCCCCcC---------CCCCCCCcccCC
Confidence 77777787654 678888888877753 145555666543
No 233
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.13 E-value=6.9e-07 Score=90.76 Aligned_cols=113 Identities=19% Similarity=0.479 Sum_probs=30.2
Q ss_pred eeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEE-EeCCCCeEEe-cCCCCCCCCcccCCCcCCCCCCCCCCC
Q psy15407 410 TCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATC-VDLIQAYECR-CAPGFQGEFCQTKTPFCAGEYNPCRNG 487 (604)
Q Consensus 410 ~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C-~~~~~~~~C~-C~~g~~g~~C~~~~~~C~~~~~~C~~~ 487 (604)
.|... .+.+.|.|+.+++|..|+.-.+.....|+.+++.| +.....+.|. |.-++.|..|+.. ..+|.++
T Consensus 305 ~C~~~-~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~-------t~~C~ng 376 (426)
T 3zyj_B 305 VCVYD-NSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNE-------LLHCQNG 376 (426)
T ss_dssp CEEEE-TTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC------------------------
T ss_pred hcCCC-CCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccC-------cccCCCC
Confidence 45442 45689999999999999853333334455544322 1222334563 4445556666432 3588888
Q ss_pred CceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCC
Q psy15407 488 ARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGD 542 (604)
Q Consensus 488 ~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G 542 (604)
++|.+.. +|.|++||+|..|+. .+|.++|+|+...| .|.=+.|
T Consensus 377 g~C~~~~---~C~C~~G~~G~~Ce~-------c~C~~~g~C~~~~G--qc~~~~~ 419 (426)
T 3zyj_B 377 GTCHNNV---RCLCPAAYTGILCEK-------LRCEEAGSCGSDSG--QGAPPHG 419 (426)
T ss_dssp -------------------------------------------------------
T ss_pred CCcCCCC---CCcCCCCCcCCCCcC-------CCCCCCCcccCCCC--ccCCCCC
Confidence 8997765 799999999988752 25777888887766 5544443
No 234
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.11 E-value=1.5e-07 Score=86.54 Aligned_cols=85 Identities=9% Similarity=-0.037 Sum_probs=46.4
Q ss_pred cceeecCCCCceeecc----CCCCCCCCCCCeEEecCCcceeee----ccccCCCCcccEEEc--cCCccccCCc----c
Q psy15407 217 STMYRDLSNNQIGFLS----NFTFSPLSKLSQLILSYNKLQCID----RDALAGLKSLRIISL--HGNDISMIPE----G 282 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L--s~N~l~~i~~----~ 282 (604)
+|++|+|++|.|..-. ...+...++|++|+|++|.|.... ..++...++|++|+| ++|.|..... .
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 5556666666654421 112333456666777777665521 234455566777777 6676663211 1
Q ss_pred cccCcccceeeeccCCCcc
Q psy15407 283 AFADLHAITHLAIGGNPLY 301 (604)
Q Consensus 283 ~f~~l~~L~~L~L~~Npl~ 301 (604)
.+...++|++|+|++|.+.
T Consensus 146 ~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEeccCCCCC
Confidence 2334456777777777653
No 235
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=98.11 E-value=2.4e-06 Score=57.99 Aligned_cols=35 Identities=29% Similarity=0.799 Sum_probs=30.5
Q ss_pred CCCCC---CCCCCCEEe--eCCCCeEeeeCCCCccCCCCc
Q psy15407 516 DCVNH---MCQNGGTCV--DGINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 516 ~C~~~---~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~ 550 (604)
+|... ||.++|+|+ +..++|+|.|++||+|.+|+.
T Consensus 2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~ 41 (45)
T 1a3p_A 2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQT 41 (45)
T ss_dssp CCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTTTCE
T ss_pred CcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCcCCc
Confidence 45555 999999998 678899999999999999985
No 236
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.10 E-value=9.5e-06 Score=83.98 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=95.6
Q ss_pred CcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceee
Q psy15407 125 NEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSR 204 (604)
Q Consensus 125 N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 204 (604)
+.++.|.. .+|.+..+|+.+.|.++ +..|...+|.+..+|+.+.+... +..
T Consensus 251 ~~v~~i~~-~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-------i~~-------------------- 301 (394)
T 4gt6_A 251 NGVARIET-HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-------ITE-------------------- 301 (394)
T ss_dssp TTEEEECT-TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-------CCE--------------------
T ss_pred CcceEccc-ceeeecccccEEecccc-cceecCcccccccccccccCCCc-------ccc--------------------
Confidence 45677765 45999999999999754 55788899998887776655421 000
Q ss_pred eeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccc
Q psy15407 205 IRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAF 284 (604)
Q Consensus 205 ~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 284 (604)
+....|.+ -.+|+.++|..+ ++.|...+|.++.+|+.|.|..+ ++.|...+|.+..+|+.++|.+|.... ..|
T Consensus 302 I~~~aF~~--c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~ 374 (394)
T 4gt6_A 302 LPESVFAG--CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAI 374 (394)
T ss_dssp ECTTTTTT--CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTC
T ss_pred cCceeecC--CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhh
Confidence 00011111 137888888754 89999999999999999999754 999999999999999999999987542 346
Q ss_pred cCcccceeeeccCCCc
Q psy15407 285 ADLHAITHLAIGGNPL 300 (604)
Q Consensus 285 ~~l~~L~~L~L~~Npl 300 (604)
....+|+.|.+..|.+
T Consensus 375 ~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 375 STDSGLQNLPVAPGSI 390 (394)
T ss_dssp BCCCCC----------
T ss_pred hccCCCCEEEeCCCCE
Confidence 6667788888876643
No 237
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=98.09 E-value=3e-06 Score=57.53 Aligned_cols=33 Identities=33% Similarity=0.683 Sum_probs=21.4
Q ss_pred CCCCCCeeec-CCCCceeeeCCCCCcCCCCcccC
Q psy15407 365 PCTNQGVCEP-LPERQYQCRCTPGYHGQHCEFMI 397 (604)
Q Consensus 365 ~C~~~g~C~~-~~~~~~~C~C~~g~~G~~c~~~~ 397 (604)
||.|+|+|.. ...+.|+|.|++||+|..|+.++
T Consensus 10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~ 43 (45)
T 1a3p_A 10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD 43 (45)
T ss_dssp CCSSSCEEEECTTTSSEEEECCTTEETTTTCEEC
T ss_pred CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCccc
Confidence 7777777762 23356777777777777776544
No 238
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=98.07 E-value=2.1e-06 Score=58.34 Aligned_cols=37 Identities=27% Similarity=0.782 Sum_probs=31.0
Q ss_pred cCCCCCC---CCCCCCCEEeeCC--CCeEeeeCCCCccCCCCc
Q psy15407 513 NVDDCVN---HMCQNGGTCVDGI--NDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 513 ~~~~C~~---~~C~~~~~C~~~~--~~y~C~C~~G~~G~~C~~ 550 (604)
++++|.. +||.+ |+|++.. ++|.|.|++||+|.+||.
T Consensus 2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence 4567876 89999 8998744 689999999999999985
No 239
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.98 E-value=4e-07 Score=83.60 Aligned_cols=62 Identities=13% Similarity=-0.007 Sum_probs=48.1
Q ss_pred cceeecCCCCceeecc----CCCCCCCCCCCeEEe--cCCcceeee----ccccCCCCcccEEEccCCcccc
Q psy15407 217 STMYRDLSNNQIGFLS----NFTFSPLSKLSQLIL--SYNKLQCID----RDALAGLKSLRIISLHGNDISM 278 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~L--s~N~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~ 278 (604)
+|++|+|++|.|.... ...+...++|++|+| ++|.|.... ..++...++|+.|+|++|.|..
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 7889999999987632 335666788999999 889987642 2345556899999999999863
No 240
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=97.93 E-value=2.8e-06 Score=62.47 Aligned_cols=42 Identities=29% Similarity=0.666 Sum_probs=27.1
Q ss_pred CcCCCCCCCCCcEEEe-----CCCCeEEecCCCCCCCCcccCCCcCC
Q psy15407 437 DDCLSHKCENNATCVD-----LIQAYECRCAPGFQGEFCQTKTPFCA 478 (604)
Q Consensus 437 ~~C~~~~C~~~~~C~~-----~~~~~~C~C~~g~~g~~C~~~~~~C~ 478 (604)
++|...||.++|+|++ ..++|.|.|++||+|..|+.++++|.
T Consensus 7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~ 53 (63)
T 1hae_A 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKV 53 (63)
T ss_dssp CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSC
T ss_pred CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCccc
Confidence 4555667777777765 45667777777777777765555443
No 241
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=97.89 E-value=2.7e-06 Score=61.40 Aligned_cols=37 Identities=27% Similarity=0.621 Sum_probs=29.2
Q ss_pred CCCcCCCCCCCCC--cEEEeCCCCeEEecCCCCC-CCCcc
Q psy15407 435 NIDDCLSHKCENN--ATCVDLIQAYECRCAPGFQ-GEFCQ 471 (604)
Q Consensus 435 ~~~~C~~~~C~~~--~~C~~~~~~~~C~C~~g~~-g~~C~ 471 (604)
++++|.+.||.++ |+|++..++|.|.|++||+ |..|+
T Consensus 10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~ 49 (61)
T 2k2s_B 10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGT 49 (61)
T ss_dssp SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSS
T ss_pred CCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCC
Confidence 5677777888877 7888888888888888888 87775
No 242
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=2.3e-06 Score=87.18 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=34.7
Q ss_pred CCCCCCeEEecCCcceeeecccc---CCCCcccEEEccCCccccCCc----ccccCcccceeeeccCCCc
Q psy15407 238 PLSKLSQLILSYNKLQCIDRDAL---AGLKSLRIISLHGNDISMIPE----GAFADLHAITHLAIGGNPL 300 (604)
Q Consensus 238 ~l~~L~~L~Ls~N~l~~i~~~~f---~~l~~L~~L~Ls~N~l~~i~~----~~f~~l~~L~~L~L~~Npl 300 (604)
.+++|+.|+|++|.|......++ ..+++|++|+|+.|.|+..-. ..+..+++|+.|+|+.|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 35677777777766653211111 235667777777776664211 1123456677777776654
No 243
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=97.83 E-value=1.5e-06 Score=61.11 Aligned_cols=29 Identities=41% Similarity=0.997 Sum_probs=14.9
Q ss_pred CCCCCcEEEe----CCCCeEEecCCCCCCCCcc
Q psy15407 443 KCENNATCVD----LIQAYECRCAPGFQGEFCQ 471 (604)
Q Consensus 443 ~C~~~~~C~~----~~~~~~C~C~~g~~g~~C~ 471 (604)
||.++|+|++ ..++|.|.|++||+|..|+
T Consensus 15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce 47 (52)
T 3ca7_A 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47 (52)
T ss_dssp TSCTTCEEEEEEETTEEEEEEECCTTEESTTSC
T ss_pred cCCCCCEEecCccCCCCCEEEECCCCCcCCCCc
Confidence 4555555553 2334555555555555554
No 244
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=97.68 E-value=3.4e-05 Score=64.93 Aligned_cols=59 Identities=36% Similarity=0.740 Sum_probs=42.7
Q ss_pred CCCCCCEEeeCC--CCe-EeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCceeCCCCCCCeeeecCCCCcCCCCC
Q psy15407 521 MCQNGGTCVDGI--NDY-TCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESL 597 (604)
Q Consensus 521 ~C~~~~~C~~~~--~~y-~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~ 597 (604)
||.++|+|++.. .+| +|.|++||+|..|++.. + .. |....| .+|.+.+..+++|..|+
T Consensus 2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~---------~----~~-----C~~g~G-~~YrG~~~~t~sG~~Cq 62 (122)
T 2fd6_A 2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK---------S----KT-----CYEGNG-HFYRGKASTDTMGRPCL 62 (122)
T ss_dssp CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEES---------S----CC-----SBCSSC-TTCCSCCCBBTTSCBBC
T ss_pred CCCCcCCcCCCcccCCCCCccCCCCCCCccccccC---------c----CC-----Cccccc-ccceeeccccccCCccc
Confidence 688889998874 455 89999999999998631 1 12 322233 46888999999998887
Q ss_pred C
Q psy15407 598 L 598 (604)
Q Consensus 598 ~ 598 (604)
.
T Consensus 63 ~ 63 (122)
T 2fd6_A 63 P 63 (122)
T ss_dssp C
T ss_pred C
Confidence 4
No 245
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=97.65 E-value=2e-05 Score=55.34 Aligned_cols=33 Identities=24% Similarity=0.929 Sum_probs=29.2
Q ss_pred CCCCCCCCEEe--eCCCCeEeeeCCCCccCCCCcC
Q psy15407 519 NHMCQNGGTCV--DGINDYTCKCEGDFVGKFCEIA 551 (604)
Q Consensus 519 ~~~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~~ 551 (604)
.+||.++|+|+ +..++|+|.|++||+|.+|+..
T Consensus 11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~ 45 (53)
T 1nql_B 11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45 (53)
T ss_dssp CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence 46899999998 6788999999999999999864
No 246
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=4.7e-06 Score=84.86 Aligned_cols=160 Identities=13% Similarity=0.050 Sum_probs=93.3
Q ss_pred CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcC--CCcccCCcCCCCCCCCCccccccEEEccCCc
Q psy15407 114 PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF--EGENDQGCLGDNYCPPKCTCTVRVLFYDGRA 191 (604)
Q Consensus 114 ~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f--~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 191 (604)
++.++.|.|++|.-..+++ +. +++|++|+|..+.|..-....+ ..+++|+.|+|+..... .....
T Consensus 171 ~P~L~~L~L~g~~~l~l~~---~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~---------~~~~~ 237 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK---KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED---------YGFDG 237 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS---CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGG---------GTCCS
T ss_pred CCCCcEEEEeCCCCceecc---cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccc---------cccch
Confidence 3478999998874223432 43 8899999998887754222222 25667776655321000 00000
Q ss_pred cccccccccceeeeeec-cccCCccccceeecCCCCceeeccCCCC---CCCCCCCeEEecCCcceeeec----cccCCC
Q psy15407 192 GECYIAVELFSSRIRVS-YYVGNYPVSTMYRDLSNNQIGFLSNFTF---SPLSKLSQLILSYNKLQCIDR----DALAGL 263 (604)
Q Consensus 192 ~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~i~~l~~~~f---~~l~~L~~L~Ls~N~l~~i~~----~~f~~l 263 (604)
. ...+. .+.....++|++|+|++|.|.......+ ..+++|++|+|+.|.|..... ..+..+
T Consensus 238 ~-----------~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 238 D-----------MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306 (362)
T ss_dssp C-----------GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred h-----------HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence 0 00000 0111112389999999998864221111 357899999999999987432 223457
Q ss_pred CcccEEEccCCccccCCcccccC-cccceeeeccCCC
Q psy15407 264 KSLRIISLHGNDISMIPEGAFAD-LHAITHLAIGGNP 299 (604)
Q Consensus 264 ~~L~~L~Ls~N~l~~i~~~~f~~-l~~L~~L~L~~Np 299 (604)
++|+.|+|++|.|+..-...+.. + ...++++.|+
T Consensus 307 ~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 307 KHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 89999999999887433322332 2 3567888877
No 247
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=97.55 E-value=3.9e-05 Score=53.82 Aligned_cols=40 Identities=30% Similarity=0.814 Sum_probs=26.1
Q ss_pred cCCCCcCCCCCCCCeeec-CCCCceeeeCCCCCcCCCCccc
Q psy15407 357 KCNACYKSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCEFM 396 (604)
Q Consensus 357 ~c~~C~~~~C~~~g~C~~-~~~~~~~C~C~~g~~G~~c~~~ 396 (604)
.|.+-..+||.|+|+|.. ...+.|.|.|++||+|..|+..
T Consensus 5 ~C~~~~~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~ 45 (53)
T 1nql_B 5 ECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45 (53)
T ss_dssp ECCSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred ccCCCCCCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence 344445567777788862 2335677888888888877743
No 248
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.40 E-value=2.6e-05 Score=69.96 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=66.1
Q ss_pred cceeecCCCCceeeccCCCCCCCCCCCeEEecCCc-ceeeeccccCCC----CcccEEEccCCc-cccCCcccccCcccc
Q psy15407 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK-LQCIDRDALAGL----KSLRIISLHGND-ISMIPEGAFADLHAI 290 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l----~~L~~L~Ls~N~-l~~i~~~~f~~l~~L 290 (604)
.|+.|||+++.|+...-..+.++++|+.|+|+++. |+.-.-..+..+ ++|++|+|+++. |+.---..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 79999999999988776778899999999999985 665433445554 379999999974 875433446778999
Q ss_pred eeeeccCCCc
Q psy15407 291 THLAIGGNPL 300 (604)
Q Consensus 291 ~~L~L~~Npl 300 (604)
++|+|++-+-
T Consensus 142 ~~L~L~~c~~ 151 (176)
T 3e4g_A 142 KYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTT
T ss_pred CEEECCCCCC
Confidence 9999997653
No 249
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=97.27 E-value=0.00019 Score=60.34 Aligned_cols=60 Identities=28% Similarity=0.623 Sum_probs=42.8
Q ss_pred CCCCCCceeecC--CCe-EEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcC
Q psy15407 483 PCRNGARCLDHF--SHY-TCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA 551 (604)
Q Consensus 483 ~C~~~~~C~~~~--~~~-~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~ 551 (604)
+|.++|+|++.. .+| +|.|++||+|..|+++++ .+|..+ ...+|++.+..++.|..|+.-
T Consensus 2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~----~~C~~g-----~G~~YrG~~~~t~sG~~Cq~W 64 (122)
T 2fd6_A 2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS----KTCYEG-----NGHFYRGKASTDTMGRPCLPW 64 (122)
T ss_dssp CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESS----CCSBCS-----SCTTCCSCCCBBTTSCBBCCT
T ss_pred CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCc----CCCccc-----ccccceeeccccccCCcccCc
Confidence 578888888763 455 889999999988886654 134321 124688888888888888753
No 250
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=97.27 E-value=0.00015 Score=51.84 Aligned_cols=31 Identities=32% Similarity=0.877 Sum_probs=25.5
Q ss_pred CCCCCCEEe--e--CCCCeEeeeCCCCccCCCCcC
Q psy15407 521 MCQNGGTCV--D--GINDYTCKCEGDFVGKFCEIA 551 (604)
Q Consensus 521 ~C~~~~~C~--~--~~~~y~C~C~~G~~G~~C~~~ 551 (604)
+|.++|+|+ + ..++|.|.|++||+|.+||..
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~ 49 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred cCCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence 788999997 3 456789999999999999863
No 251
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=97.08 E-value=0.00032 Score=48.03 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=28.6
Q ss_pred CCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407 566 HHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQ 600 (604)
Q Consensus 566 ~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~ 600 (604)
...|.||.|......+.+.|.|++||+|++||..+
T Consensus 13 ~~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~~d 47 (50)
T 3e50_C 13 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD 47 (50)
T ss_pred cCcccCCEEeeccCCCCeEEECCCCCcccCCCcee
Confidence 45688889986555578999999999999999764
No 252
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=97.03 E-value=0.00018 Score=54.13 Aligned_cols=39 Identities=28% Similarity=0.592 Sum_probs=29.8
Q ss_pred CCCCC---CCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCC
Q psy15407 561 TSPCQ---HHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQ 599 (604)
Q Consensus 561 ~~~C~---~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~ 599 (604)
.++|. .+.|.||.|....+.+.+.|.|.+||+|.+||..
T Consensus 37 ~~pC~~~~~~yClnG~C~~i~~~~~~~C~C~~GYtG~RCE~l 78 (79)
T 1xdt_R 37 RDPCLRKYKDFCIHGECKYVKELRAPSCICHPGYHGERCHGL 78 (79)
T ss_dssp --CTTTTTTTCCSSEEECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred CCCCCccccCcCCCCEeeeecCCCCeEEEcCCCccccccccc
Confidence 45666 6789999996544446789999999999999853
No 253
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=97.01 E-value=0.00013 Score=52.23 Aligned_cols=34 Identities=29% Similarity=0.689 Sum_probs=26.2
Q ss_pred CCCCCc-eeCCC--CCCCeeeecCCCCcCCCCCCCcc
Q psy15407 568 DCKNGI-CFQPQ--GSNDYLCKCAPGYSGKESLLQQT 601 (604)
Q Consensus 568 ~C~~g~-C~~~~--g~~~~~C~C~~G~~G~~C~~~~~ 601 (604)
.|.||+ |+... +.+.|.|.|++||+|++||..+.
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~~~ 51 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEI 51 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEECC
T ss_pred cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcccCC
Confidence 577876 98421 22679999999999999997654
No 254
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=96.99 E-value=0.00029 Score=62.69 Aligned_cols=36 Identities=36% Similarity=0.933 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407 515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~ 550 (604)
++|...+|.++|+|++..++|+|.|++||.|..||.
T Consensus 120 ~~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~ 155 (162)
T 1g1s_A 120 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY 155 (162)
T ss_dssp CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCE
T ss_pred CCCcCCCCCCCCEEecCCCCceEeCCCCCcCccccc
Confidence 346667899999999999999999999999999996
No 255
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=96.95 E-value=0.00047 Score=47.24 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=29.2
Q ss_pred CCCC---CCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCC
Q psy15407 562 SPCQ---HHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQ 599 (604)
Q Consensus 562 ~~C~---~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~ 599 (604)
.+|. ...|.||.|....+.+.+.|.|++||+|.+||..
T Consensus 10 ~~C~~~~~~yC~nG~C~~i~~~~~~~C~C~~gy~G~RCe~k 50 (50)
T 2rnl_A 10 NPCNAEFQNFCIHGECKYIEHLEAVTCKCQQEYFGERCGEK 50 (50)
T ss_dssp CTTTTTGGGTCSSSEEEEETTTTEEEEECCSSCCSSSCCCC
T ss_pred cccCchhhCcCCCCEEEEecCCCCeeEECCCCccccccccC
Confidence 4555 3568898997444447899999999999999863
No 256
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=96.89 E-value=0.00063 Score=47.70 Aligned_cols=32 Identities=25% Similarity=0.755 Sum_probs=26.1
Q ss_pred cCCCCCC----------CCCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407 513 NVDDCVN----------HMCQNGGTCVDGINDYTCKCEGDFVGK 546 (604)
Q Consensus 513 ~~~~C~~----------~~C~~~~~C~~~~~~y~C~C~~G~~G~ 546 (604)
++++|.. ++|. +.|++++|+|+|.|++||++.
T Consensus 3 DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~~ 44 (53)
T 1apq_A 3 DLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYELQ 44 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEEC
T ss_pred ccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeEC
Confidence 5677764 5786 489999999999999999854
No 257
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.81 E-value=0.00018 Score=64.47 Aligned_cols=34 Identities=21% Similarity=0.114 Sum_probs=19.8
Q ss_pred cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCC
Q psy15407 116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN 150 (604)
Q Consensus 116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N 150 (604)
.+++|+|+++.|+...-. .+.++++|++|+|+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCC
Confidence 456667776666543322 2456666666666665
No 258
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=96.81 E-value=0.00045 Score=47.49 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=27.7
Q ss_pred CCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407 566 HHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQ 600 (604)
Q Consensus 566 ~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~ 600 (604)
...|.||.|......+.+.|.|++||+|++||..+
T Consensus 13 ~~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~~~ 47 (50)
T 1iox_A 13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVD 47 (50)
T ss_dssp TTSCTTCCEEEETTTTEEEECCCTTEETTTTCEEC
T ss_pred cCcccCCEEEeEcCCCCeEEECCCCcccCCCCeec
Confidence 45688888964444478999999999999999764
No 259
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=96.77 E-value=0.0017 Score=56.09 Aligned_cols=58 Identities=36% Similarity=0.771 Sum_probs=32.3
Q ss_pred CCCCCCEEeeC--CCCe-EeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCceeCCCCCCCeeeecCCCCcCCCCC
Q psy15407 521 MCQNGGTCVDG--INDY-TCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESL 597 (604)
Q Consensus 521 ~C~~~~~C~~~--~~~y-~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~ 597 (604)
||.++|+|+.. ...| +|.|++||.|.+|++.. + ..|....| .+|.......++|..|+
T Consensus 14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~---------~---------~~C~~g~G-~~YrG~~s~T~sG~~Cq 74 (145)
T 2i9a_A 14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK---------S---------KTCYEGNG-HFYRGKASTDTMGRPCL 74 (145)
T ss_dssp CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES---------S---------CCEECTTC-TTCCSCCCBBTTSCBCC
T ss_pred CCCCCCCcCCCccccCCccccCCCCCCCCceeccc---------c---------ccCCCCCc-cccccceecCCcCCccc
Confidence 67777777654 2344 67777777777776421 0 01333333 35666666666666664
No 260
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Probab=96.71 E-value=0.0019 Score=50.59 Aligned_cols=68 Identities=29% Similarity=0.730 Sum_probs=40.2
Q ss_pred CCCCCCCCCcEEEe-CCCCeEEecCCCCCC--CCcccCC-CcCCCCCCCCCCCCceeecC-----CCeEEecCCCCc
Q psy15407 439 CLSHKCENNATCVD-LIQAYECRCAPGFQG--EFCQTKT-PFCAGEYNPCRNGARCLDHF-----SHYTCECTPGFS 506 (604)
Q Consensus 439 C~~~~C~~~~~C~~-~~~~~~C~C~~g~~g--~~C~~~~-~~C~~~~~~C~~~~~C~~~~-----~~~~C~C~~g~~ 506 (604)
|....|..++.|.. ..+...|+|.+||.| ..|.... ..|......|..++.|.... +...|.|.+||.
T Consensus 7 C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~ 83 (99)
T 1ob1_C 7 CVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS 83 (99)
T ss_dssp CCSCCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred eccCCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence 33445667777876 466677888888874 3454332 45554445566666665443 345666666653
No 261
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.62 E-value=0.00093 Score=61.00 Aligned_cols=83 Identities=13% Similarity=-0.013 Sum_probs=45.8
Q ss_pred cceeecCCCCceeeccCCC----CCCCCCCCeEEecCCcceeee----ccccCCCCcccEEEccCCccccCCc-------
Q psy15407 217 STMYRDLSNNQIGFLSNFT----FSPLSKLSQLILSYNKLQCID----RDALAGLKSLRIISLHGNDISMIPE------- 281 (604)
Q Consensus 217 ~L~~L~Ls~N~i~~l~~~~----f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~i~~------- 281 (604)
.|+.|+|++|+|......+ +..-..|++|+|+.|.|..-. ..++..-+.|+.|+|++|....|..
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 5666777777766543222 223456777777777776421 2345555667777777553322221
Q ss_pred ccccCcccceeeeccCCC
Q psy15407 282 GAFADLHAITHLAIGGNP 299 (604)
Q Consensus 282 ~~f~~l~~L~~L~L~~Np 299 (604)
.++..-+.|+.|+|+.|.
T Consensus 151 ~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 151 MAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHCSSCCEEECCCCC
T ss_pred HHHHhCCCcCeEeccCCC
Confidence 123344567777776554
No 262
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=96.62 E-value=0.00085 Score=71.55 Aligned_cols=38 Identities=37% Similarity=0.961 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCCEEee-CCCCeEeeeC-CCCccCCCCcC
Q psy15407 514 VDDCVNHMCQNGGTCVD-GINDYTCKCE-GDFVGKFCEIA 551 (604)
Q Consensus 514 ~~~C~~~~C~~~~~C~~-~~~~y~C~C~-~G~~G~~C~~~ 551 (604)
+++|..+||.++|+|++ ..++|+|.|+ +||+|..||..
T Consensus 2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~ 41 (553)
T 1q4g_A 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIP 41 (553)
T ss_dssp CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCEE
T ss_pred CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCCC
Confidence 47898999999999999 8999999999 99999999974
No 263
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=96.57 E-value=0.00073 Score=60.06 Aligned_cols=36 Identities=33% Similarity=0.928 Sum_probs=23.4
Q ss_pred cCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccC
Q psy15407 438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTK 473 (604)
Q Consensus 438 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~ 473 (604)
+|...||.++++|++..++|.|.|++||.|..|+..
T Consensus 121 ~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~~ 156 (162)
T 1g1s_A 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYV 156 (162)
T ss_dssp CCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred CCcCCCCCCCCEEecCCCCceEeCCCCCcCcccccC
Confidence 344556666667777666777777777777766643
No 264
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=96.56 E-value=0.0011 Score=46.84 Aligned_cols=40 Identities=20% Similarity=0.648 Sum_probs=25.7
Q ss_pred CcCCCCCCCCCCCCceeecCCCeEEecCCCCc----CCcCcccCCCC
Q psy15407 475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGFS----GVNCTVNVDDC 517 (604)
Q Consensus 475 ~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~c~~~~~~C 517 (604)
++|....+.|. ..|+++.++|+|.|++||. |..|. ++++|
T Consensus 2 dEC~~~~~~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~-didec 45 (55)
T 2jkh_L 2 KLCSLDNGDCD--QFCHEEQNSVVCSCARGYTLADNGKACI-PTGPY 45 (55)
T ss_dssp CCTTTGGGGCS--SEEEEETTEEEEECCTTEEECTTSSCEE-ESSSS
T ss_pred ccccCCCCCcC--cEeEcCCCCeEEeCCCCCEECCCCCeec-cCccc
Confidence 34544444565 3688888888888888885 44554 55655
No 265
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.52 E-value=0.0016 Score=48.65 Aligned_cols=36 Identities=17% Similarity=0.499 Sum_probs=28.9
Q ss_pred CCCcCCCCCCCCCCCCceeecCCCeEEe-cCCCCcCC
Q psy15407 473 KTPFCAGEYNPCRNGARCLDHFSHYTCE-CTPGFSGV 508 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~-C~~g~~g~ 508 (604)
++++|....+.|.++++|+++.++|+|. +..||.+.
T Consensus 2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~ 38 (71)
T 2kl7_A 2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIND 38 (71)
T ss_dssp CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSC
T ss_pred ccccccCCCCCCCCCCEeECCCCCeEecccCCccccc
Confidence 6788988777898888899999999997 56677643
No 266
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=96.38 E-value=0.002 Score=45.04 Aligned_cols=31 Identities=32% Similarity=1.003 Sum_probs=23.0
Q ss_pred CCCcCCC----------CCCCCCcEEEeCCCCeEEecCCCCCC
Q psy15407 435 NIDDCLS----------HKCENNATCVDLIQAYECRCAPGFQG 467 (604)
Q Consensus 435 ~~~~C~~----------~~C~~~~~C~~~~~~~~C~C~~g~~g 467 (604)
++++|.. .+|. ++|+++.|+|.|.|++||.+
T Consensus 3 DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~ 43 (53)
T 1apq_A 3 DLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYEL 43 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEE
T ss_pred ccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeE
Confidence 5667764 4575 48888888888888888874
No 267
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=96.37 E-value=0.0017 Score=69.31 Aligned_cols=38 Identities=34% Similarity=0.987 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCCEEee-CCCCeEeeeC-CCCccCCCCcC
Q psy15407 514 VDDCVNHMCQNGGTCVD-GINDYTCKCE-GDFVGKFCEIA 551 (604)
Q Consensus 514 ~~~C~~~~C~~~~~C~~-~~~~y~C~C~-~G~~G~~C~~~ 551 (604)
+++|..+||.++|+|++ ..++|+|.|+ +||+|..|+..
T Consensus 1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~ 40 (587)
T 3nt1_A 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP 40 (587)
T ss_dssp CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCCc
Confidence 47899999999999995 5589999999 99999999975
No 268
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Probab=96.30 E-value=0.0055 Score=48.00 Aligned_cols=67 Identities=24% Similarity=0.594 Sum_probs=49.5
Q ss_pred CCCCCCCCCCeeeeCCCCceEeeCCCCCcC--CCCCcCC-CcCCC--CCCCCCcEEEeCC-----CCeEEecCCCCC
Q psy15407 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTG--DRCEINI-DDCLS--HKCENNATCVDLI-----QAYECRCAPGFQ 466 (604)
Q Consensus 400 C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g--~~C~~~~-~~C~~--~~C~~~~~C~~~~-----~~~~C~C~~g~~ 466 (604)
|....|..++.|.....+...|.|.+||.| ..|..+. +.|.. .-|..++.|+... +...|.|.+||.
T Consensus 7 C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~ 83 (99)
T 1ob1_C 7 CVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS 83 (99)
T ss_dssp CCSCCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred eccCCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence 444557778888776778889999999985 3565322 56765 3488999998764 578999999976
No 269
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=96.24 E-value=0.0095 Score=46.96 Aligned_cols=68 Identities=29% Similarity=0.563 Sum_probs=44.9
Q ss_pred CCCCCCCCCcEEEe-CCCCeEEecCCCCC--CCCcccCCCcCCCCCCCCCCCCceeecC-CCeEEecCCCCc
Q psy15407 439 CLSHKCENNATCVD-LIQAYECRCAPGFQ--GEFCQTKTPFCAGEYNPCRNGARCLDHF-SHYTCECTPGFS 506 (604)
Q Consensus 439 C~~~~C~~~~~C~~-~~~~~~C~C~~g~~--g~~C~~~~~~C~~~~~~C~~~~~C~~~~-~~~~C~C~~g~~ 506 (604)
|....|..++.|.. ..|..+|.|..||. |..|......|....+.|...+.|.... ..-.|.|.++|.
T Consensus 13 C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~ 84 (105)
T 1n1i_A 13 CIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGS 84 (105)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECTTEEECSSSEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred ecCCCCCCCCCeEECCCCCEeEEEECCeeccCCEEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence 44456777788877 66777888888887 4466555333655555677777776553 456677777753
No 270
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.19 E-value=0.0027 Score=47.41 Aligned_cols=35 Identities=17% Similarity=0.637 Sum_probs=28.9
Q ss_pred cCCCcCCC--CCCCCCcEEEeCCCCeEEec-CCCCCCC
Q psy15407 434 INIDDCLS--HKCENNATCVDLIQAYECRC-APGFQGE 468 (604)
Q Consensus 434 ~~~~~C~~--~~C~~~~~C~~~~~~~~C~C-~~g~~g~ 468 (604)
.+|+||.. .+|.++++|+|+.++|+|.+ ..||.+.
T Consensus 1 ~DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~ 38 (71)
T 2kl7_A 1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIND 38 (71)
T ss_dssp CCSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSC
T ss_pred CccccccCCCCCCCCCCEeECCCCCeEecccCCccccc
Confidence 37899985 57999999999999999994 4677654
No 271
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=96.15 E-value=0.0021 Score=64.81 Aligned_cols=41 Identities=22% Similarity=0.475 Sum_probs=27.6
Q ss_pred CCCCC-eeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCC
Q psy15407 366 CTNQG-VCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCR 406 (604)
Q Consensus 366 C~~~g-~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~ 406 (604)
|..++ .|.....+.+.|.|..+|.|..|+...+...+.|+.
T Consensus 257 Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~ 298 (375)
T 4aqt_A 257 CNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWR 298 (375)
T ss_dssp CTTSCSCEEECTTSCEEECCCTTEESTTSCEECTTCCSSCCC
T ss_pred CCCCCcccCCCCCCCeeeeCcCCCcCCCcccCCCCCcCCCCC
Confidence 44443 344444456789999999999998766656666654
No 272
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=96.14 E-value=0.0014 Score=62.71 Aligned_cols=37 Identities=24% Similarity=0.784 Sum_probs=26.6
Q ss_pred cCCCCC--CCCCCCCCEEeeCCCCeEeeeCCCCc--cCCCC
Q psy15407 513 NVDDCV--NHMCQNGGTCVDGINDYTCKCEGDFV--GKFCE 549 (604)
Q Consensus 513 ~~~~C~--~~~C~~~~~C~~~~~~y~C~C~~G~~--G~~C~ 549 (604)
++|+|. .++|..++.|+++.|+|.|.|++||. |..|.
T Consensus 4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~ 44 (285)
T 1gl4_A 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCV 44 (285)
T ss_dssp ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEE
T ss_pred cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCC
Confidence 677886 56788888888888888888888887 44454
No 273
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=96.08 E-value=0.0024 Score=68.11 Aligned_cols=39 Identities=26% Similarity=0.822 Sum_probs=32.8
Q ss_pred CCcCCCCCCCCCcEEEe-CCCCeEEecC-CCCCCCCcccCC
Q psy15407 436 IDDCLSHKCENNATCVD-LIQAYECRCA-PGFQGEFCQTKT 474 (604)
Q Consensus 436 ~~~C~~~~C~~~~~C~~-~~~~~~C~C~-~g~~g~~C~~~~ 474 (604)
+++|.++||.++|+|++ ..++|.|.|+ +||+|..|+...
T Consensus 2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~~ 42 (553)
T 1q4g_A 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42 (553)
T ss_dssp CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCEEC
T ss_pred CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCCCc
Confidence 57788889999999988 8888999999 999999887543
No 274
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=95.93 E-value=0.003 Score=67.35 Aligned_cols=38 Identities=39% Similarity=0.974 Sum_probs=32.9
Q ss_pred CCCcCCCCCCCCeeecCCCCceeeeCC-CCCcCCCCccc
Q psy15407 359 NACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCEFM 396 (604)
Q Consensus 359 ~~C~~~~C~~~g~C~~~~~~~~~C~C~-~g~~G~~c~~~ 396 (604)
++|.++||.|+|+|.....+.|.|.|+ +||+|..|+..
T Consensus 2 d~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~ 40 (587)
T 3nt1_A 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP 40 (587)
T ss_dssp CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred CCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCCc
Confidence 578999999999999644468999999 99999999864
No 275
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=95.65 E-value=0.0055 Score=45.36 Aligned_cols=42 Identities=33% Similarity=0.804 Sum_probs=26.6
Q ss_pred CCCcCCCCCCCCCCCCceeecCC-CeEEecCCCCc----CCcCcccCCCC
Q psy15407 473 KTPFCAGEYNPCRNGARCLDHFS-HYTCECTPGFS----GVNCTVNVDDC 517 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~~~-~~~C~C~~g~~----g~~c~~~~~~C 517 (604)
++++|....+.|.. .|+++.+ +|+|.|++||. |..|. ++++|
T Consensus 4 d~~eC~~~nggC~h--~C~n~~g~s~~C~C~~Gy~L~~D~~tC~-d~dec 50 (69)
T 1kli_L 4 DQLICVNENGGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY 50 (69)
T ss_dssp CCCCTTSGGGGCSS--EEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred ccccccCCCCCcCC--EeEcCCCCCEEEeCCCCCeECCCCCccc-Ccccc
Confidence 45666554455653 5777777 68888888885 44554 45555
No 276
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=95.65 E-value=0.012 Score=50.74 Aligned_cols=59 Identities=25% Similarity=0.501 Sum_probs=34.2
Q ss_pred CCCCCCeeecCC-CCce-eeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCC
Q psy15407 365 PCTNQGVCEPLP-ERQY-QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433 (604)
Q Consensus 365 ~C~~~g~C~~~~-~~~~-~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~ 433 (604)
||.|+|+|+... ...+ .|.|+.||.|..|+.+.++ .|.......|+........|..|+
T Consensus 14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~~----------~C~~g~G~~YrG~~s~T~sG~~Cq 74 (145)
T 2i9a_A 14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSK----------TCYEGNGHFYRGKASTDTMGRPCL 74 (145)
T ss_dssp CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESSC----------CEECTTCTTCCSCCCBBTTSCBCC
T ss_pred CCCCCCCcCCCccccCCccccCCCCCCCCceeccccc----------cCCCCCccccccceecCCcCCccc
Confidence 788888886531 1233 7888888888888765432 132222334555555555555554
No 277
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=95.60 E-value=0.0021 Score=61.46 Aligned_cols=33 Identities=24% Similarity=0.681 Sum_probs=14.7
Q ss_pred CCcCCCCCCCCCCCCceeecCCCeEEecCCCCc
Q psy15407 474 TPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS 506 (604)
Q Consensus 474 ~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 506 (604)
+++|....+.|..++.|+|+.++|.|.|.+||.
T Consensus 5 iDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~ 37 (285)
T 1gl4_A 5 QQTCANNRHQCSVHAECRDYATGFCCRCVANYT 37 (285)
T ss_dssp --CHHHHGGGSCTTEEEEECSSCEEEEECTTEE
T ss_pred chhccCCCCCCCCCCEeEcCCCCeEEEcCCCCC
Confidence 344433334444444455555555555555554
No 278
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=95.47 E-value=0.006 Score=45.84 Aligned_cols=35 Identities=26% Similarity=0.790 Sum_probs=25.8
Q ss_pred CCCC---CCCCCCCCEEe--eCCCCeEeeeCCCCccCCCCc
Q psy15407 515 DDCV---NHMCQNGGTCV--DGINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 515 ~~C~---~~~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~ 550 (604)
+.|. .+.|.+| +|. ...+.|.|.|.+||+|.+|+.
T Consensus 38 ~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~ 77 (79)
T 1xdt_R 38 DPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCHG 77 (79)
T ss_dssp -CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEESTTCCE
T ss_pred CCCCccccCcCCCC-EeeeecCCCCeEEEcCCCcccccccc
Confidence 4454 4678885 894 344678999999999999984
No 279
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=95.45 E-value=0.0067 Score=41.91 Aligned_cols=33 Identities=21% Similarity=0.657 Sum_probs=24.0
Q ss_pred CCCCCCCceeecCCCeEEecCCCCc----CCcCcccCCCC
Q psy15407 482 NPCRNGARCLDHFSHYTCECTPGFS----GVNCTVNVDDC 517 (604)
Q Consensus 482 ~~C~~~~~C~~~~~~~~C~C~~g~~----g~~c~~~~~~C 517 (604)
+.|.. .|+++.++|+|.|++||. |..|. ++++|
T Consensus 6 g~C~~--~C~n~~gs~~C~C~~Gy~L~~d~~tC~-dide~ 42 (51)
T 1kig_L 6 GGCDQ--FCREERSEVRCSCAHGYVLGDDSKSCV-STERF 42 (51)
T ss_dssp TSSSS--CCCEETTEECCCCCTTEEECTTSSCEE-ECSSS
T ss_pred CCcCC--EeEcCCCCeEEeCCCCcEECCCCCccc-cCCcc
Confidence 45653 588888999999999996 55664 56665
No 280
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=95.45 E-value=0.0058 Score=43.03 Aligned_cols=34 Identities=26% Similarity=0.630 Sum_probs=25.8
Q ss_pred CCCCC--CCCCCCCEEeeCCCCeEeeeCCCCc----cCCCCc
Q psy15407 515 DDCVN--HMCQNGGTCVDGINDYTCKCEGDFV----GKFCEI 550 (604)
Q Consensus 515 ~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~----G~~C~~ 550 (604)
|+|.. +.|.+ .|++++|+|+|.|++||+ |..|+.
T Consensus 2 dEC~~~~~~C~~--~C~nt~Gsy~C~C~~Gy~L~~d~~~C~d 41 (55)
T 2jkh_L 2 KLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKACIP 41 (55)
T ss_dssp CCTTTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred ccccCCCCCcCc--EeEcCCCCeEEeCCCCCEECCCCCeecc
Confidence 45653 45764 899999999999999997 455543
No 281
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=95.44 E-value=0.011 Score=59.63 Aligned_cols=30 Identities=30% Similarity=0.854 Sum_probs=19.1
Q ss_pred CCCCCCc-ee-ecCCCeEEecCCCCcCCcCcc
Q psy15407 483 PCRNGAR-CL-DHFSHYTCECTPGFSGVNCTV 512 (604)
Q Consensus 483 ~C~~~~~-C~-~~~~~~~C~C~~g~~g~~c~~ 512 (604)
.|..++. |. +..+.+.|.|.+||.|..|+.
T Consensus 256 ~Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~ 287 (375)
T 4aqt_A 256 KCNGHASECVKNEFDKLMCNCKHNTYGVDCEK 287 (375)
T ss_dssp CCTTSCSCEEECTTSCEEECCCTTEESTTSCE
T ss_pred cCCCCCcccCCCCCCCeeeeCcCCCcCCCccc
Confidence 4665554 32 334567778888888888763
No 282
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.39 E-value=0.0028 Score=57.77 Aligned_cols=82 Identities=9% Similarity=0.034 Sum_probs=60.1
Q ss_pred cceeecCCCC-ceeec----cCCCCCCCCCCCeEEecCCcceeeecc----ccCCCCcccEEEccCCccccCCc----cc
Q psy15407 217 STMYRDLSNN-QIGFL----SNFTFSPLSKLSQLILSYNKLQCIDRD----ALAGLKSLRIISLHGNDISMIPE----GA 283 (604)
Q Consensus 217 ~L~~L~Ls~N-~i~~l----~~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~----~~ 283 (604)
+|+.|+|++| +|..- ...++..-..|+.|+|++|.|...... ++..-+.|+.|+|+.|.|..--. .+
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 7999999986 77642 123456678899999999999864433 34456889999999999984221 23
Q ss_pred ccCcccceeeeccCC
Q psy15407 284 FADLHAITHLAIGGN 298 (604)
Q Consensus 284 f~~l~~L~~L~L~~N 298 (604)
+..-+.|+.|+|++|
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 555567999999865
No 283
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=95.38 E-value=0.011 Score=52.44 Aligned_cols=34 Identities=38% Similarity=1.003 Sum_probs=30.1
Q ss_pred CCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407 517 CVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 517 C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~ 550 (604)
|...+|..+|+|++..++|.|.|.+||.|..|+.
T Consensus 122 ~~~~~C~~~g~C~~~~~~~~c~C~~g~~g~~C~~ 155 (164)
T 3cfw_A 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155 (164)
T ss_dssp CCTTSSCSSEEEEEETTEEEEEECTTCBSSSSCB
T ss_pred CCCCcCCCCCeecccCCCceeeeCCCcccccccc
Confidence 4456799899999999999999999999999986
No 284
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=95.36 E-value=0.042 Score=43.32 Aligned_cols=67 Identities=19% Similarity=0.459 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCeeeeCCCCceEeeCCCCCcC--CCCCcCCCc-CCC--CCCCCCcEEEeCC-CCeEEecCCCCC
Q psy15407 399 ACYGNPCRNSGTCKLLEEGRFNCECAPGYTG--DRCEINIDD-CLS--HKCENNATCVDLI-QAYECRCAPGFQ 466 (604)
Q Consensus 399 ~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g--~~C~~~~~~-C~~--~~C~~~~~C~~~~-~~~~C~C~~g~~ 466 (604)
.|....|..++.|.....|.-.|.|..||.+ ..|..+ ++ |.. .-|..++.|.... ....|.|.++|.
T Consensus 12 ~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~ 84 (105)
T 1n1i_A 12 KCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKEVECKCTKEGS 84 (105)
T ss_dssp SCCSSCCCTTEEEEECTTSCEEEEECTTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred EecCCCCCCCCCeEECCCCCEeEEEECCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence 3555567778888887788889999999984 467544 55 653 3488999999874 788999999975
No 285
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=95.21 E-value=0.042 Score=55.62 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=14.4
Q ss_pred CeEee-eCCCCccCCCCcCcc
Q psy15407 534 DYTCK-CEGDFVGKFCEIAPF 553 (604)
Q Consensus 534 ~y~C~-C~~G~~G~~C~~~~~ 553 (604)
+.+|. |..++.|.+|+.+..
T Consensus 356 ~G~C~~C~~nt~G~~CErC~~ 376 (403)
T 2y38_A 356 GGVCLDCQHHTTGINCERCLP 376 (403)
T ss_dssp CEEESSCCSSEESTTSCEECT
T ss_pred CCCCCCCcCcCcCCCCCcCCC
Confidence 44774 888888888887543
No 286
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=95.17 E-value=0.016 Score=39.60 Aligned_cols=30 Identities=33% Similarity=0.779 Sum_probs=24.1
Q ss_pred CCCCCCCEEee--CCCCeEeeeCCCCccCCCCc
Q psy15407 520 HMCQNGGTCVD--GINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 520 ~~C~~~~~C~~--~~~~y~C~C~~G~~G~~C~~ 550 (604)
+.|.+| +|.- ..+.+.|.|++||+|.+|+.
T Consensus 14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCEH 45 (50)
T ss_pred CcccCC-EEeeccCCCCeEEECCCCCcccCCCc
Confidence 468775 8964 44678999999999999985
No 287
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=95.07 E-value=0.015 Score=39.82 Aligned_cols=32 Identities=38% Similarity=0.835 Sum_probs=19.6
Q ss_pred CCCCCCCCeeec-CCCCceeeeCCCCCcCCCCcc
Q psy15407 363 KSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCEF 395 (604)
Q Consensus 363 ~~~C~~~g~C~~-~~~~~~~C~C~~g~~G~~c~~ 395 (604)
.+.|.| |+|.. ...+.+.|.|+.||+|.+|+.
T Consensus 13 ~~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 13 KHYCIK-GRCRFVVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp TTSCTT-CCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred cCcccC-CEEEeEcCCCCeEEECCCCcccCCCCe
Confidence 355666 67742 223456777777777777764
No 288
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=95.05 E-value=0.011 Score=56.94 Aligned_cols=59 Identities=31% Similarity=0.786 Sum_probs=41.1
Q ss_pred CCCCCceeecCCCeEEecCCCCcCCcCcccCC---------CCCCC----CCCCCCEEeeCCCCeEeeeCCCC------c
Q psy15407 484 CRNGARCLDHFSHYTCECTPGFSGVNCTVNVD---------DCVNH----MCQNGGTCVDGINDYTCKCEGDF------V 544 (604)
Q Consensus 484 C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~---------~C~~~----~C~~~~~C~~~~~~y~C~C~~G~------~ 544 (604)
|..+|.|.- ..|.|.+||.|..|+-..+ .|... .|+.+|.|+-+ +|.|..+| .
T Consensus 198 C~g~G~~~C----G~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG----~C~C~~~~~~~~~~~ 269 (280)
T 2p26_A 198 CHGKGFLEC----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPGKLIY 269 (280)
T ss_dssp GGGSEEEET----TEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEETT----EEEECCCSSTTCEEE
T ss_pred cCCCCeECC----CceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeCC----eeECcCCCCCCeeEe
Confidence 554555542 3588999999988863322 57532 49999999976 89998776 5
Q ss_pred cCCCCc
Q psy15407 545 GKFCEI 550 (604)
Q Consensus 545 G~~C~~ 550 (604)
|.+|+.
T Consensus 270 G~~~~~ 275 (280)
T 2p26_A 270 GQYCEH 275 (280)
T ss_dssp STTSCE
T ss_pred eEeccc
Confidence 667663
No 289
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.01 E-value=0.02 Score=39.11 Aligned_cols=30 Identities=30% Similarity=0.926 Sum_probs=23.5
Q ss_pred CCCCCCCEEe--eCCCCeEeeeCCCCccCCCCc
Q psy15407 520 HMCQNGGTCV--DGINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 520 ~~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~ 550 (604)
+.|.+ |+|. ...+.+.|.|+.||+|.+|+.
T Consensus 18 ~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 18 NFCIH-GECKYIEHLEAVTCKCQQEYFGERCGE 49 (50)
T ss_dssp GTCSS-SEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred CcCCC-CEEEEecCCCCeeEECCCCcccccccc
Confidence 46776 5896 456678899999999999974
No 290
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=94.96 E-value=0.012 Score=52.05 Aligned_cols=38 Identities=32% Similarity=0.870 Sum_probs=27.1
Q ss_pred CCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcC
Q psy15407 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFC 477 (604)
Q Consensus 439 C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C 477 (604)
|.+.+|.++++|++..++|.|.|.+||.|..|+. ..+|
T Consensus 122 ~~~~~C~~~g~C~~~~~~~~c~C~~g~~g~~C~~-~~~c 159 (164)
T 3cfw_A 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF-VQVD 159 (164)
T ss_dssp CCTTSSCSSEEEEEETTEEEEEECTTCBSSSSCB-C---
T ss_pred CCCCcCCCCCeecccCCCceeeeCCCcccccccc-cccC
Confidence 4456777888888888888888888888888863 3344
No 291
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=94.73 E-value=0.0079 Score=53.76 Aligned_cols=40 Identities=23% Similarity=0.769 Sum_probs=31.2
Q ss_pred CCCcCCcCcccCCCCCCCC-----CCCCCEEeeCCCCeEeeeCCCCc
Q psy15407 503 PGFSGVNCTVNVDDCVNHM-----CQNGGTCVDGINDYTCKCEGDFV 544 (604)
Q Consensus 503 ~g~~g~~c~~~~~~C~~~~-----C~~~~~C~~~~~~y~C~C~~G~~ 544 (604)
.||.+..+..++++|...+ |.+ .|++..|+|+|.|++||+
T Consensus 113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~ 157 (170)
T 1szb_A 113 TGFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYV 157 (170)
T ss_dssp CEEEEEEEEEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEE
T ss_pred cCceeeeeccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcE
Confidence 5676666666778887543 765 799999999999999997
No 292
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=94.70 E-value=0.051 Score=54.98 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=15.9
Q ss_pred CCeeee-cCCCCcCCCCCCC
Q psy15407 581 NDYLCK-CAPGYSGKESLLQ 599 (604)
Q Consensus 581 ~~~~C~-C~~G~~G~~C~~~ 599 (604)
++.+|. |..+++|.+||..
T Consensus 355 ~~G~C~~C~~nt~G~~CErC 374 (403)
T 2y38_A 355 GGGVCLDCQHHTTGINCERC 374 (403)
T ss_dssp CCEEESSCCSSEESTTSCEE
T ss_pred CCCCCCCCcCcCcCCCCCcC
Confidence 457896 9999999999964
No 293
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Probab=94.69 E-value=0.011 Score=51.84 Aligned_cols=36 Identities=47% Similarity=1.062 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407 515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550 (604)
Q Consensus 515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~ 550 (604)
+.|...||.+++.|.+..+.|.|.|.+||.|..||.
T Consensus 120 ~~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~ 155 (157)
T 1g1t_A 120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155 (157)
T ss_dssp CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred CCCCCCCCCCCCEeecCCCCeeEECCCCccCccccc
Confidence 345566888889999988999999999999999985
No 294
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Probab=94.69 E-value=0.0069 Score=53.25 Aligned_cols=35 Identities=37% Similarity=1.077 Sum_probs=23.8
Q ss_pred cCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCccc
Q psy15407 438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472 (604)
Q Consensus 438 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~ 472 (604)
+|...||.+++.|.+..+.|.|.|.+||.|..|+.
T Consensus 121 ~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~ 155 (157)
T 1g1t_A 121 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155 (157)
T ss_dssp CCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred CCCCCCCCCCCEeecCCCCeeEECCCCccCccccc
Confidence 34455666667777777777777777777777764
No 295
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=94.61 E-value=0.02 Score=50.77 Aligned_cols=27 Identities=30% Similarity=0.843 Sum_probs=22.4
Q ss_pred CCCCCc-eeCCCCCCCeeeecCCCCcCCCCCCC
Q psy15407 568 DCKNGI-CFQPQGSNDYLCKCAPGYSGKESLLQ 599 (604)
Q Consensus 568 ~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C~~~ 599 (604)
.|.||+ |+... +|.|++||+|.+|+.-
T Consensus 154 ~C~ngG~Cv~P~-----~C~C~~Gw~G~~C~~~ 181 (188)
T 2ygo_A 154 GCRNGGFCNERR-----ICECPDGFHGPHCEGT 181 (188)
T ss_dssp CCCTTCEECTTS-----CEECCTTCBTTTTCBC
T ss_pred CCCCCCEeCCCC-----cccCcCCCCCCCCcCC
Confidence 577776 98755 6999999999999864
No 296
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=94.44 E-value=0.018 Score=42.52 Aligned_cols=37 Identities=27% Similarity=0.631 Sum_probs=28.4
Q ss_pred ccCCCCCC--CCCCCCCEEeeCCC-CeEeeeCCCCc----cCCCCc
Q psy15407 512 VNVDDCVN--HMCQNGGTCVDGIN-DYTCKCEGDFV----GKFCEI 550 (604)
Q Consensus 512 ~~~~~C~~--~~C~~~~~C~~~~~-~y~C~C~~G~~----G~~C~~ 550 (604)
.++++|.. ..|++ .|+++.| +|+|.|++||. |..|..
T Consensus 3 ~d~~eC~~~nggC~h--~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d 46 (69)
T 1kli_L 3 DDQLICVNENGGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCTP 46 (69)
T ss_dssp SCCCCTTSGGGGCSS--EEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred cccccccCCCCCcCC--EeEcCCCCCEEEeCCCCCeECCCCCcccC
Confidence 46788864 34765 7999998 89999999997 555653
No 297
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=94.24 E-value=0.035 Score=57.24 Aligned_cols=40 Identities=30% Similarity=0.930 Sum_probs=20.3
Q ss_pred cccCCCcCCCCCCCCCCCCceeecCCCeEEecCC-CCcCCcCc
Q psy15407 470 CQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTP-GFSGVNCT 511 (604)
Q Consensus 470 C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~-g~~g~~c~ 511 (604)
|....+.|.. ++|.++++|++..++|+|.|+. ||.|..|+
T Consensus 181 C~~~~~~C~~--~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~ 221 (410)
T 3asi_A 181 CEGPSTTCQE--DSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN 221 (410)
T ss_dssp CCCCSSCCCT--TSSSTTCEEEECSSSEEEECTTTSEESTTSC
T ss_pred CCCCCCCccc--ccCCCCCEecCCCCCceEeccCCcccCCCCC
Confidence 4434444543 3555555555555555555553 55555554
No 298
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=94.03 E-value=0.022 Score=39.67 Aligned_cols=33 Identities=36% Similarity=0.888 Sum_probs=22.9
Q ss_pred CCCCCCCceeecCC-CeEEecCCCCc----CCcCcccCCCC
Q psy15407 482 NPCRNGARCLDHFS-HYTCECTPGFS----GVNCTVNVDDC 517 (604)
Q Consensus 482 ~~C~~~~~C~~~~~-~~~C~C~~g~~----g~~c~~~~~~C 517 (604)
+.|.. .|+++.+ +|+|.|++||. |..|. ++++|
T Consensus 7 ggC~~--~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~-d~dec 44 (53)
T 2bz6_L 7 GGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY 44 (53)
T ss_dssp GGCSS--EEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred CCcCC--EeEcCCCCCEEeeCCCCCEECCCCCccc-CCccc
Confidence 34543 5888887 68888888886 55664 56666
No 299
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=93.41 E-value=0.047 Score=48.40 Aligned_cols=30 Identities=43% Similarity=1.115 Sum_probs=25.2
Q ss_pred CcCCCCCCCCeeecCCCCceeeeCCCCCcCCCCcc
Q psy15407 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395 (604)
Q Consensus 361 C~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~ 395 (604)
|. .+|.|+|.|+. ...|.|+.||.|..|+.
T Consensus 151 C~-~~C~ngG~Cv~----P~~C~C~~Gw~G~~C~~ 180 (188)
T 2ygo_A 151 CP-GGCRNGGFCNE----RRICECPDGFHGPHCEG 180 (188)
T ss_dssp CT-TCCCTTCEECT----TSCEECCTTCBTTTTCB
T ss_pred cC-CCCCCCCEeCC----CCcccCcCCCCCCCCcC
Confidence 44 58999999984 34999999999999984
No 300
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=93.15 E-value=0.049 Score=52.33 Aligned_cols=67 Identities=24% Similarity=0.518 Sum_probs=39.9
Q ss_pred CCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCC----CCC-CCceeCCCCCCCeeeecCCCC-----
Q psy15407 522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH----DCK-NGICFQPQGSNDYLCKCAPGY----- 591 (604)
Q Consensus 522 C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~----~C~-~g~C~~~~g~~~~~C~C~~G~----- 591 (604)
|..+|+|.-+ .|.|.+||.|..|+-.............|... .|. +|.|+-. +|.|..+|
T Consensus 198 C~g~G~~~CG----~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG------~C~C~~~~~~~~~ 267 (280)
T 2p26_A 198 CHGKGFLECG----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG------QCLCHTSDVPGKL 267 (280)
T ss_dssp GGGSEEEETT----EEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEETT------EEEECCCSSTTCE
T ss_pred cCCCCeECCC----ceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeCC------eeECcCCCCCCee
Confidence 7767888764 79999999999998431100000000134321 243 3447643 49997775
Q ss_pred -cCCCCCC
Q psy15407 592 -SGKESLL 598 (604)
Q Consensus 592 -~G~~C~~ 598 (604)
.|++||-
T Consensus 268 ~~G~~~~~ 275 (280)
T 2p26_A 268 IYGQYCEH 275 (280)
T ss_dssp EESTTSCE
T ss_pred EeeEeccc
Confidence 7888873
No 301
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=92.68 E-value=0.028 Score=50.10 Aligned_cols=40 Identities=23% Similarity=0.726 Sum_probs=24.1
Q ss_pred CCCcCCCCCcCCCcCCCCC-----CCCCcEEEeCCCCeEEecCCCCC
Q psy15407 425 PGYTGDRCEINIDDCLSHK-----CENNATCVDLIQAYECRCAPGFQ 466 (604)
Q Consensus 425 ~g~~g~~C~~~~~~C~~~~-----C~~~~~C~~~~~~~~C~C~~g~~ 466 (604)
.||.+..+..++++|...+ |.+ .|+++.++|.|.|.+||.
T Consensus 113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~ 157 (170)
T 1szb_A 113 TGFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYV 157 (170)
T ss_dssp CEEEEEEEEEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEE
T ss_pred cCceeeeeccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcE
Confidence 3444433334555665432 543 677777788888888886
No 302
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=92.53 E-value=0.085 Score=54.32 Aligned_cols=43 Identities=28% Similarity=0.743 Sum_probs=32.9
Q ss_pred CCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCC-CCcCCCCCc
Q psy15407 391 QHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAP-GYTGDRCEI 434 (604)
Q Consensus 391 ~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~-g~~g~~C~~ 434 (604)
..|+...+.|..+||.++|+|.. ..+.|.|.|+. ||.|..|+.
T Consensus 179 ~gC~~~~~~C~~~pC~n~g~C~~-~~~~~~C~C~~~~~~G~~C~~ 222 (410)
T 3asi_A 179 RGCEGPSTTCQEDSCSNQGVCLQ-QWDGFSCDCSMTSFSGPLCND 222 (410)
T ss_dssp ESCCCCSSCCCTTSSSTTCEEEE-CSSSEEEECTTTSEESTTSCE
T ss_pred CCCCCCCCCcccccCCCCCEecC-CCCCceEeccCCcccCCCCCC
Confidence 35765667888888888888876 46778888885 888888874
No 303
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=91.34 E-value=0.054 Score=37.26 Aligned_cols=28 Identities=25% Similarity=0.686 Sum_probs=22.3
Q ss_pred CCCCCCEEeeCCCCeEeeeCCCCc----cCCCCc
Q psy15407 521 MCQNGGTCVDGINDYTCKCEGDFV----GKFCEI 550 (604)
Q Consensus 521 ~C~~~~~C~~~~~~y~C~C~~G~~----G~~C~~ 550 (604)
.|.+ .|++++|+|+|.|++||+ |..|+.
T Consensus 7 ~C~~--~C~n~~gs~~C~C~~Gy~L~~d~~tC~d 38 (51)
T 1kig_L 7 GCDQ--FCREERSEVRCSCAHGYVLGDDSKSCVS 38 (51)
T ss_dssp SSSS--CCCEETTEECCCCCTTEEECTTSSCEEE
T ss_pred CcCC--EeEcCCCCeEEeCCCCcEECCCCCcccc
Confidence 4654 699999999999999997 555653
No 304
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=91.17 E-value=0.1 Score=36.21 Aligned_cols=28 Identities=25% Similarity=0.746 Sum_probs=22.2
Q ss_pred CCCCCCEEeeCCC-CeEeeeCCCCc----cCCCCc
Q psy15407 521 MCQNGGTCVDGIN-DYTCKCEGDFV----GKFCEI 550 (604)
Q Consensus 521 ~C~~~~~C~~~~~-~y~C~C~~G~~----G~~C~~ 550 (604)
.|++ .|+++.+ +|+|.|++||+ |..|+.
T Consensus 8 gC~~--~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d 40 (53)
T 2bz6_L 8 GCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCTP 40 (53)
T ss_dssp GCSS--EEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred CcCC--EeEcCCCCCEEeeCCCCCEECCCCCcccC
Confidence 4654 7999998 79999999997 556653
No 305
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.47 E-value=0.49 Score=37.69 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=41.0
Q ss_pred CCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCc
Q psy15407 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND 275 (604)
Q Consensus 225 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~ 275 (604)
+..++.|...+|.+..+|+.+.|-.+ ++.|...+|.+..+|+.+.|....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 45677888889999999999988764 788888889888888888887654
No 306
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=90.00 E-value=0.19 Score=59.53 Aligned_cols=42 Identities=26% Similarity=0.821 Sum_probs=35.9
Q ss_pred CcccCCCCCCCCCCCCCEEeeCCCCeEeeeC-CCCccCCCCcC
Q psy15407 510 CTVNVDDCVNHMCQNGGTCVDGINDYTCKCE-GDFVGKFCEIA 551 (604)
Q Consensus 510 c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~-~G~~G~~C~~~ 551 (604)
|....+.|...||.++|+|....++|.|.|+ +||.|..|+..
T Consensus 1013 C~~~~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~ 1055 (1245)
T 3qcw_A 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDP 1055 (1245)
T ss_dssp SSCCCCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBC
T ss_pred eecccCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCC
Confidence 3333467888999999999998899999999 69999999864
No 307
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=89.54 E-value=0.11 Score=45.46 Aligned_cols=39 Identities=23% Similarity=0.737 Sum_probs=27.0
Q ss_pred CCcCCcCcccCCCCCC---CCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407 504 GFSGVNCTVNVDDCVN---HMCQNGGTCVDGINDYTCKCEGDFV 544 (604)
Q Consensus 504 g~~g~~c~~~~~~C~~---~~C~~~~~C~~~~~~y~C~C~~G~~ 544 (604)
||.......++++|.. .+|. ..|.+..++|+|.|.+||.
T Consensus 107 GF~~~y~~~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~ 148 (159)
T 1nzi_A 107 GFAAYYVATDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYF 148 (159)
T ss_dssp EEEEEEEEEECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCE
T ss_pred cceeeeecccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcE
Confidence 4443333446677764 3565 4788888999999999997
No 308
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=88.89 E-value=0.095 Score=56.50 Aligned_cols=44 Identities=18% Similarity=0.474 Sum_probs=22.6
Q ss_pred ecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCc
Q psy15407 460 RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT 511 (604)
Q Consensus 460 ~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~ 511 (604)
.|.+||.|+.|. ....|. ..|..+|.|++ ..|.|.+||.|..|.
T Consensus 521 ~C~~gw~g~dc~-i~~~Cp---~~C~ghG~C~~----G~C~Cd~G~~G~~C~ 564 (725)
T 2e26_A 521 DKQQTWAIDNVY-IGDGCL---DMCSGHGRCVQ----GSCVCDEQWGGLYCD 564 (725)
T ss_dssp CTTCCEEEEEEE-EESCSS---GGGGGSEEEET----TEEEECTTEESTTSC
T ss_pred ccCCCccccccc-ccCCCC---cccCCCcEECC----CCEeeCCCccCCCcC
Confidence 455555555552 234443 25555555543 155555555555554
No 309
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=88.89 E-value=0.26 Score=58.36 Aligned_cols=43 Identities=26% Similarity=0.797 Sum_probs=35.4
Q ss_pred CCcCCCcCCCCCCCCCcEEEeCCCCeEEecC-CCCCCCCcccCC
Q psy15407 432 CEINIDDCLSHKCENNATCVDLIQAYECRCA-PGFQGEFCQTKT 474 (604)
Q Consensus 432 C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~-~g~~g~~C~~~~ 474 (604)
|....+.|...||.++|+|+...++|.|.|+ +||.|..|+...
T Consensus 1013 C~~~~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~~ 1056 (1245)
T 3qcw_A 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPG 1056 (1245)
T ss_dssp SSCCCCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBCC
T ss_pred eecccCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCCC
Confidence 4444567888999999999998889999999 699999997544
No 310
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=88.68 E-value=0.34 Score=34.33 Aligned_cols=28 Identities=29% Similarity=0.739 Sum_probs=20.1
Q ss_pred CCCCCCEEeeCC-CCeEeeeCCCCc----cCCCCc
Q psy15407 521 MCQNGGTCVDGI-NDYTCKCEGDFV----GKFCEI 550 (604)
Q Consensus 521 ~C~~~~~C~~~~-~~y~C~C~~G~~----G~~C~~ 550 (604)
.|++ .|++++ |+|+|.|++||. |..|+.
T Consensus 8 gC~~--~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d 40 (59)
T 2wph_E 8 RCEQ--FCKNSADNKVVCSCTEGYRLAENQKSCEP 40 (59)
T ss_dssp GCSS--EEEECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred CcCC--EeEeCCCCCEEeeCCCCcEECCCCCcccC
Confidence 3554 688888 589999999986 455553
No 311
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=88.62 E-value=0.055 Score=58.27 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=34.4
Q ss_pred eeCCCCccCCCCcCcccccCCCCCCCCCCCCCC-CCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407 538 KCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCK-NGICFQPQGSNDYLCKCAPGYSGKESLLQQ 600 (604)
Q Consensus 538 ~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~-~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~ 600 (604)
.|.+||.|+.|.. ...|.. .|. +|.|++.. |+|.+||.|..|+...
T Consensus 521 ~C~~gw~g~dc~i----------~~~Cp~-~C~ghG~C~~G~------C~Cd~G~~G~~C~~~~ 567 (725)
T 2e26_A 521 DKQQTWAIDNVYI----------GDGCLD-MCSGHGRCVQGS------CVCDEQWGGLYCDEPE 567 (725)
T ss_dssp CTTCCEEEEEEEE----------ESCSSG-GGGGSEEEETTE------EEECTTEESTTSCEES
T ss_pred ccCCCcccccccc----------cCCCCc-ccCCCcEECCCC------EeeCCCccCCCcCccC
Confidence 6899999999984 123443 343 46698744 9999999999998654
No 312
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=86.34 E-value=1.7 Score=33.25 Aligned_cols=67 Identities=24% Similarity=0.464 Sum_probs=42.6
Q ss_pred CCCCCCCCCcEEEeC-CCCeEEecCCCCC--CCCcccC-CCcCCCCCCCCCCCCceeecC-CCeEEecCCCC
Q psy15407 439 CLSHKCENNATCVDL-IQAYECRCAPGFQ--GEFCQTK-TPFCAGEYNPCRNGARCLDHF-SHYTCECTPGF 505 (604)
Q Consensus 439 C~~~~C~~~~~C~~~-~~~~~C~C~~g~~--g~~C~~~-~~~C~~~~~~C~~~~~C~~~~-~~~~C~C~~g~ 505 (604)
|....|..++.|... .+.-.|.|..+|. |..|..+ ...|....+.|...+.|.... ..-.|.|...+
T Consensus 7 C~~tkcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~~~~~C~~NNGGCd~nA~C~~~~~~kIvC~C~~~~ 78 (95)
T 1b9w_A 7 CIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEG 78 (95)
T ss_dssp CSSCCCCTTEEEEECTTSCEEEEECTTEEEETTEEEECTTCCTTTGGGGSCTTSEEEECTTSCEEEECCSTT
T ss_pred cccCCCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcCCCCCccccCCCcCCCcceeecCCCcEEEECCCCC
Confidence 444466777888764 4567788888886 5555433 235665566677777776555 45667777664
No 313
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=81.97 E-value=0.59 Score=33.06 Aligned_cols=28 Identities=25% Similarity=0.770 Sum_probs=21.4
Q ss_pred CCCCCCCceeecC-CCeEEecCCCCc----CCcCc
Q psy15407 482 NPCRNGARCLDHF-SHYTCECTPGFS----GVNCT 511 (604)
Q Consensus 482 ~~C~~~~~C~~~~-~~~~C~C~~g~~----g~~c~ 511 (604)
+.|.. .|++.. ++|+|.|++||. |..|.
T Consensus 7 ggC~~--~C~n~~~gs~~C~C~~Gy~L~~D~~tC~ 39 (59)
T 2wph_E 7 GRCEQ--FCKNSADNKVVCSCTEGYRLAENQKSCE 39 (59)
T ss_dssp GGCSS--EEEECSTTCEEEECCTTEEECTTSSCEE
T ss_pred CCcCC--EeEeCCCCCEEeeCCCCcEECCCCCccc
Confidence 45653 699998 599999999996 45564
No 314
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=81.39 E-value=0.48 Score=41.26 Aligned_cols=31 Identities=29% Similarity=0.866 Sum_probs=21.3
Q ss_pred cCCCcCCC---CCCCCCcEEEeCCCCeEEecCCCCC
Q psy15407 434 INIDDCLS---HKCENNATCVDLIQAYECRCAPGFQ 466 (604)
Q Consensus 434 ~~~~~C~~---~~C~~~~~C~~~~~~~~C~C~~g~~ 466 (604)
.++++|.. .+|. ..|.+..++|.|.|.+||.
T Consensus 115 ~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~ 148 (159)
T 1nzi_A 115 TDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYF 148 (159)
T ss_dssp EECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCE
T ss_pred ccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcE
Confidence 34566653 2453 4688888888888888887
No 315
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=80.24 E-value=4.6 Score=30.94 Aligned_cols=67 Identities=16% Similarity=0.374 Sum_probs=47.8
Q ss_pred CCCCCCCCCCeeeeCCCCceEeeCCCCCc--CCCCCcC-CCcCCC--CCCCCCcEEEeCC-CCeEEecCCCCC
Q psy15407 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYT--GDRCEIN-IDDCLS--HKCENNATCVDLI-QAYECRCAPGFQ 466 (604)
Q Consensus 400 C~~~~C~~~~~C~~~~~~~~~C~C~~g~~--g~~C~~~-~~~C~~--~~C~~~~~C~~~~-~~~~C~C~~g~~ 466 (604)
|....|+.++.|.....+.-.|.|..+|. |..|..+ ...|.. +-|..++.|.... ..-.|+|...+.
T Consensus 7 C~~tkcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~~~~~C~~NNGGCd~nA~C~~~~~~kIvC~C~~~~~ 79 (95)
T 1b9w_A 7 CIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEGS 79 (95)
T ss_dssp CSSCCCCTTEEEEECTTSCEEEEECTTEEEETTEEEECTTCCTTTGGGGSCTTSEEEECTTSCEEEECCSTTE
T ss_pred cccCCCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcCCCCCccccCCCcCCCcceeecCCCcEEEECCCCCC
Confidence 44456777888887667778899999986 5566533 235653 4588889998776 678899988753
No 316
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.60 E-value=2.8 Score=33.18 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=45.4
Q ss_pred CCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccC-CCccc
Q psy15407 249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGG-NPLYC 302 (604)
Q Consensus 249 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~-Npl~C 302 (604)
+..++.|...+|.+..+|+.+.|-.+ ++.|...+|....+|+.+.|.+ ||..+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~P~~~ 58 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGEDPSAY 58 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSCGGGC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCCCCeE
Confidence 45678899999999999999999764 8899999999999999999875 56654
No 317
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}
Probab=71.34 E-value=4 Score=42.43 Aligned_cols=26 Identities=23% Similarity=0.588 Sum_probs=16.0
Q ss_pred CCCCCCCEEeeC-CCCeEeeeCCCCcc
Q psy15407 520 HMCQNGGTCVDG-INDYTCKCEGDFVG 545 (604)
Q Consensus 520 ~~C~~~~~C~~~-~~~y~C~C~~G~~G 545 (604)
++|..+++|+.. .+.|.|.|+.||.|
T Consensus 27 ~~c~~~a~C~~~~~~~~~c~C~~G~ag 53 (551)
T 3fby_A 27 SECHEHADCVLERDGSRSCVCAVGWAG 53 (551)
T ss_dssp CCCCTTEEEEECTTSCEEEEECTTEES
T ss_pred CCCCCCCeeEeCCCCCEecCCCCCCCC
Confidence 466666666554 34566777777763
No 318
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=70.09 E-value=1.5 Score=43.63 Aligned_cols=29 Identities=28% Similarity=0.714 Sum_probs=11.8
Q ss_pred CcCCCCCCCCCCCCceeecCCCeEEecCCCCc
Q psy15407 475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGFS 506 (604)
Q Consensus 475 ~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 506 (604)
++|. ....|.+ .|.++.++|+|.|.+||.
T Consensus 2 ~ec~-~~~~C~~--~C~n~~g~~~C~C~~g~~ 30 (349)
T 3v64_C 2 NECA-EEGYCSQ--GCTNSEGAFQCWCEAGYE 30 (349)
T ss_dssp --------CCSS--EECCC---CCEECCTTEE
T ss_pred cccC-CCCCCcC--eeecCCCCeEEECCCCcc
Confidence 4555 3345553 466666666666666665
No 319
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=63.71 E-value=3.1 Score=40.00 Aligned_cols=18 Identities=33% Similarity=0.977 Sum_probs=10.9
Q ss_pred EEEeCCCCeEEecCCCCC
Q psy15407 449 TCVDLIQAYECRCAPGFQ 466 (604)
Q Consensus 449 ~C~~~~~~~~C~C~~g~~ 466 (604)
.|.++.++|+|.|..||.
T Consensus 16 ~C~~~~~~~~C~C~~G~~ 33 (283)
T 3f1s_B 16 FCLPGQESYTCSCAQGYR 33 (283)
T ss_dssp BCCCCTTSCCCBCCTTEE
T ss_pred EeeCCCCCeEecCCCCcc
Confidence 466666666666666664
No 320
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=58.75 E-value=3.1 Score=44.03 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=11.3
Q ss_pred CCeeeecCCCCcC
Q psy15407 581 NDYLCKCAPGYSG 593 (604)
Q Consensus 581 ~~~~C~C~~G~~G 593 (604)
|+|.|.|..||.-
T Consensus 308 Gs~~C~C~ng~~r 320 (536)
T 3fl7_A 308 GATSCECEEGFFR 320 (536)
T ss_dssp TCSSCEECTTCBC
T ss_pred CccEEEEeccccc
Confidence 7899999999974
No 321
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=57.13 E-value=2.9 Score=41.59 Aligned_cols=28 Identities=25% Similarity=0.914 Sum_probs=15.3
Q ss_pred CCcCC-CCCCCCCcEEEeCCCCeEEecCCCC
Q psy15407 436 IDDCL-SHKCENNATCVDLIQAYECRCAPGF 465 (604)
Q Consensus 436 ~~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~ 465 (604)
++||. ...|.+ .|.++.++|.|.|.+||
T Consensus 1 i~ec~~~~~C~~--~C~n~~g~~~C~C~~g~ 29 (349)
T 3v64_C 1 VNECAEEGYCSQ--GCTNSEGAFQCWCEAGY 29 (349)
T ss_dssp --------CCSS--EECCC---CCEECCTTE
T ss_pred CcccCCCCCCcC--eeecCCCCeEEECCCCc
Confidence 47786 345664 89999999999999987
No 322
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=56.67 E-value=3.9 Score=39.25 Aligned_cols=31 Identities=32% Similarity=0.794 Sum_probs=20.4
Q ss_pred CCcCCCC-CCCCCCCCceeecCCCeEEecCCCCc
Q psy15407 474 TPFCAGE-YNPCRNGARCLDHFSHYTCECTPGFS 506 (604)
Q Consensus 474 ~~~C~~~-~~~C~~~~~C~~~~~~~~C~C~~g~~ 506 (604)
.++|... .+.|.+ .|.++.++|+|.|.+||.
T Consensus 2 ~~eC~~~~~~~C~~--~C~~~~~~~~C~C~~G~~ 33 (283)
T 3f1s_B 2 KNECHPERTDGCQH--FCLPGQESYTCSCAQGYR 33 (283)
T ss_dssp -CCCCSSCSSSCSS--BCCCCTTSCCCBCCTTEE
T ss_pred CCccCCCCCCCCCC--EeeCCCCCeEecCCCCcc
Confidence 4567665 556653 477777777777777774
No 323
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=49.42 E-value=12 Score=36.27 Aligned_cols=22 Identities=27% Similarity=0.779 Sum_probs=16.4
Q ss_pred CCCCCCEEeeCC------CCeEeeeCCCCc
Q psy15407 521 MCQNGGTCVDGI------NDYTCKCEGDFV 544 (604)
Q Consensus 521 ~C~~~~~C~~~~------~~y~C~C~~G~~ 544 (604)
.|++ .|...+ ++|+|.|+.||.
T Consensus 279 ~Cs~--~C~~~p~~~~~~~~~~C~C~~g~~ 306 (316)
T 1ijq_A 279 GCQY--LCLPAPQINPHSPKFTCACPDGML 306 (316)
T ss_dssp GCSS--EEEECCCCSTTCCSEEEECCTTCE
T ss_pred CcCc--ccCCCccccCCCCCeEeeCCCCCE
Confidence 4654 787664 578999999986
No 324
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=42.54 E-value=18 Score=40.90 Aligned_cols=38 Identities=29% Similarity=0.635 Sum_probs=29.7
Q ss_pred CCCcCCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccC
Q psy15407 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMI 397 (604)
Q Consensus 359 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~ 397 (604)
++|.-.||.++|++... .+...|.|++||.|..|+...
T Consensus 498 ~~c~C~PC~ngg~~~l~-g~~C~C~C~~g~~G~~Ce~~~ 535 (913)
T 3t5o_A 498 DPCQCAPCPNNGRPTLS-GTECLCVCQSGTYGENCEKQS 535 (913)
T ss_dssp CGGGSCCBTTTBEEEEE-TTEEEEECCTTBCSTTSCCBC
T ss_pred ccccCCCCCCCCEeecC-CCceEEEccCCccccCccCcc
Confidence 34544689999999853 356889999999999998654
No 325
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=42.45 E-value=13 Score=42.22 Aligned_cols=50 Identities=26% Similarity=0.372 Sum_probs=37.0
Q ss_pred CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCC
Q psy15407 473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG 526 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~ 526 (604)
..+.|.- .+|.+++.++.......|.|++||.|..|+... |...++...|
T Consensus 496 e~~~c~C--~PC~ngg~~~l~g~~C~C~C~~g~~G~~Ce~~~--~~~~~~~v~G 545 (913)
T 3t5o_A 496 KFDPCQC--APCPNNGRPTLSGTECLCVCQSGTYGENCEKQS--PDYKSNAVDG 545 (913)
T ss_dssp TTCGGGS--CCBTTTBEEEEETTEEEEECCTTBCSTTSCCBC--SSCCCCCBCC
T ss_pred ccccccC--CCCCCCCEeecCCCceEEEccCCccccCccCcc--ccccccccCC
Confidence 4566743 489999999877777889999999999998655 6555554433
No 326
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}
Probab=39.28 E-value=13 Score=38.66 Aligned_cols=32 Identities=25% Similarity=0.643 Sum_probs=27.0
Q ss_pred CCCCCCCCeeecCCCCceeeeCCCCCcCC--CCc
Q psy15407 363 KSPCTNQGVCEPLPERQYQCRCTPGYHGQ--HCE 394 (604)
Q Consensus 363 ~~~C~~~g~C~~~~~~~~~C~C~~g~~G~--~c~ 394 (604)
.+||..++.|+....+.|.|.|+.||.|. .|.
T Consensus 26 ~~~c~~~a~C~~~~~~~~~c~C~~G~ag~G~~c~ 59 (551)
T 3fby_A 26 PSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59 (551)
T ss_dssp BCCCCTTEEEEECTTSCEEEEECTTEESSSSSCE
T ss_pred CCCCCCCCeeEeCCCCCEecCCCCCCCCCCcccC
Confidence 46899999999988788999999999864 554
No 327
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=33.59 E-value=31 Score=33.46 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=15.7
Q ss_pred CCCCCCEEeeCCC--CeEeeeCCCCc
Q psy15407 521 MCQNGGTCVDGIN--DYTCKCEGDFV 544 (604)
Q Consensus 521 ~C~~~~~C~~~~~--~y~C~C~~G~~ 544 (604)
.|++ .|...++ +|+|.|+.||.
T Consensus 276 ~Cs~--~C~~~~~~~~~~C~C~~g~~ 299 (318)
T 3sov_A 276 GCSH--LCLMSPVKPFYQCACPTGVK 299 (318)
T ss_dssp GCSS--EEEECSSTTSEEEECSTTCC
T ss_pred Ccce--EEecCCCCCCeEEECCCCCE
Confidence 4554 6877655 68888888886
No 328
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=30.07 E-value=20 Score=35.87 Aligned_cols=20 Identities=20% Similarity=0.632 Sum_probs=17.4
Q ss_pred CCeeeecCCCCcCCCCCCCc
Q psy15407 581 NDYLCKCAPGYSGKESLLQQ 600 (604)
Q Consensus 581 ~~~~C~C~~G~~G~~C~~~~ 600 (604)
..|.|+|..||.|+.|+.+.
T Consensus 395 ~~F~C~Cy~gw~G~~C~~~~ 414 (424)
T 2pe4_A 395 VEFKCRCYPGWQAPWCERKS 414 (424)
T ss_dssp HHEEEEECTTBCTTTTCSBC
T ss_pred hCcEeeccCCCCcccccCCC
Confidence 45899999999999999654
No 329
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=27.04 E-value=28 Score=37.48 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=20.0
Q ss_pred CCCcCCCCCCCCCCCCceeecC-CCeEEecCCCCcC
Q psy15407 473 KTPFCAGEYNPCRNGARCLDHF-SHYTCECTPGFSG 507 (604)
Q Consensus 473 ~~~~C~~~~~~C~~~~~C~~~~-~~~~C~C~~g~~g 507 (604)
..++|......|.+ .|.+.+ ++|+|.|++||..
T Consensus 264 ~~n~C~~~ng~C~~--~C~~~~~~~~~C~C~~g~~l 297 (628)
T 4a0p_A 264 GWNECASSNGHCSH--LCLAVPVGGFVCGCPAHYSL 297 (628)
T ss_dssp CCCTTTTTGGGCSS--EEEEETTTEEEEECSTTCEE
T ss_pred cceEeccCCCCcch--hhhcCCCCCeeEEcCCCcEe
Confidence 55666554445542 466666 6677777777653
No 330
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=26.99 E-value=35 Score=35.94 Aligned_cols=56 Identities=30% Similarity=0.664 Sum_probs=29.7
Q ss_pred CCCCCeeecCCCCceeeeCCCCCc--CCCCcccCCCCCC------------CCCCCCCeeeeCCCCceEeeCCCCCcCC
Q psy15407 366 CTNQGVCEPLPERQYQCRCTPGYH--GQHCEFMIDACYG------------NPCRNSGTCKLLEEGRFNCECAPGYTGD 430 (604)
Q Consensus 366 C~~~g~C~~~~~~~~~C~C~~g~~--G~~c~~~~~~C~~------------~~C~~~~~C~~~~~~~~~C~C~~g~~g~ 430 (604)
|...|.... + ...|.|..||. |..|+. |.. .+|..+.. ....|.+.|.|..||...
T Consensus 252 C~~dG~w~~-p--~G~C~C~~G~e~~~~~C~a----C~~g~~k~~~~~~~C~~CP~~S~--s~~~Gs~~C~C~ng~~ra 321 (536)
T 3fl7_A 252 CAVDGEWLV-P--IGQCLCQAGYEKVEDACQA----CSPGFFKFEASESPCLECPEHTL--PSPEGATSCECEEGFFRA 321 (536)
T ss_dssp ECTTSCBCC-C--BCCCEECTTEEEETTEEEE----CCTTEECCSCCSSCCEECCSSEE--CCCTTCSSCEECTTCBCC
T ss_pred EcCCCCEec-c--cCcEeccCccccCCceeee----cCCCCCcccCCCCccccCCCCCC--CCCCCccEEEEecccccc
Confidence 555566653 2 24788888886 333431 211 11322221 224577788888887643
No 331
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=26.14 E-value=17 Score=36.19 Aligned_cols=21 Identities=24% Similarity=0.773 Sum_probs=9.7
Q ss_pred CCCCCCceeecCCCeEEecCCCCcC
Q psy15407 483 PCRNGARCLDHFSHYTCECTPGFSG 507 (604)
Q Consensus 483 ~C~~~~~C~~~~~~~~C~C~~g~~g 507 (604)
.|..+|.|+. .+|.|.+||.|
T Consensus 197 ~CsGhG~C~~----g~C~Cd~G~~g 217 (387)
T 2ddu_A 197 YCSGHGDCIS----GVCFCDLGYTA 217 (387)
T ss_dssp GGGGSEEEET----TEEEECTTEEE
T ss_pred ccCCCceecC----CeEEecCCccc
Confidence 4544455532 24555555544
No 332
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=24.93 E-value=40 Score=32.40 Aligned_cols=12 Identities=33% Similarity=1.030 Sum_probs=9.4
Q ss_pred CCeEEecCCCCc
Q psy15407 495 SHYTCECTPGFS 506 (604)
Q Consensus 495 ~~~~C~C~~g~~ 506 (604)
++|+|.|+.||.
T Consensus 295 ~~~~C~C~~g~~ 306 (316)
T 1ijq_A 295 PKFTCACPDGML 306 (316)
T ss_dssp CSEEEECCTTCE
T ss_pred CCeEeeCCCCCE
Confidence 468888888886
No 333
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=24.13 E-value=35 Score=36.76 Aligned_cols=35 Identities=17% Similarity=0.587 Sum_probs=26.5
Q ss_pred CCcCCCcCCCC--CCCCCcEEEeCC-CCeEEecCCCCCCC
Q psy15407 432 CEINIDDCLSH--KCENNATCVDLI-QAYECRCAPGFQGE 468 (604)
Q Consensus 432 C~~~~~~C~~~--~C~~~~~C~~~~-~~~~C~C~~g~~g~ 468 (604)
.+..+++|... .|. ..|.+.+ ++|.|.|++||...
T Consensus 261 ~q~~~n~C~~~ng~C~--~~C~~~~~~~~~C~C~~g~~l~ 298 (628)
T 4a0p_A 261 RQSGWNECASSNGHCS--HLCLAVPVGGFVCGCPAHYSLN 298 (628)
T ss_dssp GSCCCCTTTTTGGGCS--SEEEEETTTEEEEECSTTCEEC
T ss_pred ccccceEeccCCCCcc--hhhhcCCCCCeeEEcCCCcEec
Confidence 34467788753 454 4899999 99999999999743
No 334
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=23.71 E-value=22 Score=36.45 Aligned_cols=14 Identities=36% Similarity=1.187 Sum_probs=7.2
Q ss_pred eeecCCCCcCCCCC
Q psy15407 584 LCKCAPGYSGKESL 597 (604)
Q Consensus 584 ~C~C~~G~~G~~C~ 597 (604)
.|.|.+||.|+.||
T Consensus 459 ~C~C~~G~~G~~Ce 472 (472)
T 3t3p_B 459 VCRCGPGWLGSQCE 472 (472)
T ss_dssp EEEECTTC------
T ss_pred ceECcCCCCCCCCC
Confidence 48999999999997
No 335
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=23.01 E-value=26 Score=37.75 Aligned_cols=29 Identities=21% Similarity=0.575 Sum_probs=21.9
Q ss_pred CCCCCC--CCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407 514 VDDCVN--HMCQNGGTCVDGINDYTCKCEGDFV 544 (604)
Q Consensus 514 ~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~ 544 (604)
.++|.. ..|++ .|.+.+++|+|.|+.||.
T Consensus 578 ~~~C~~~ng~C~~--~C~~~~~~~~C~C~~g~~ 608 (619)
T 3s94_A 578 SNPCAEENGGCSH--LCLYRPQGLRCACPIGFE 608 (619)
T ss_dssp CCGGGSGGGGCSS--EEEEETTEEEEECCTTCE
T ss_pred cccCCCCCCChhH--hhccCCCCeEEECCCCCE
Confidence 345542 23654 899999999999999997
No 336
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=22.00 E-value=38 Score=34.75 Aligned_cols=14 Identities=36% Similarity=1.142 Sum_probs=6.1
Q ss_pred EeeeCCCCccCCCC
Q psy15407 536 TCKCEGDFVGKFCE 549 (604)
Q Consensus 536 ~C~C~~G~~G~~C~ 549 (604)
.|.|.+||.|..||
T Consensus 459 ~C~C~~G~~G~~Ce 472 (472)
T 3t3p_B 459 VCRCGPGWLGSQCE 472 (472)
T ss_dssp EEEECTTC------
T ss_pred ceECcCCCCCCCCC
Confidence 57788888888775
No 337
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=21.85 E-value=53 Score=31.71 Aligned_cols=18 Identities=33% Similarity=0.796 Sum_probs=11.4
Q ss_pred ceeecCC--CeEEecCCCCc
Q psy15407 489 RCLDHFS--HYTCECTPGFS 506 (604)
Q Consensus 489 ~C~~~~~--~~~C~C~~g~~ 506 (604)
.|...++ +|+|.|+.||.
T Consensus 280 ~C~~~~~~~~~~C~C~~g~~ 299 (318)
T 3sov_A 280 LCLMSPVKPFYQCACPTGVK 299 (318)
T ss_dssp EEEECSSTTSEEEECSTTCC
T ss_pred EEecCCCCCCeEEECCCCCE
Confidence 4655543 57777777775
Done!