RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15407
(604 letters)
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 161 bits (409), Expect = 1e-46
Identities = 80/130 (61%), Positives = 97/130 (74%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
DLSNN+I LSN +FS +++L LILSYN+L+CI GLKSLR++SLHGNDIS++
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Query: 280 PEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTA 339
PEGAF DL A++HLAIG NPLYCDC + WLS+WVK +Y EPGIARC P M DKLLLT
Sbjct: 118 PEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTT 177
Query: 340 PASSFQCKEK 349
P+ F C
Sbjct: 178 PSKKFTCAAA 187
Score = 82.0 bits (203), Expect = 4e-18
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
+ CP+ C+C T V CS +GLK +PK IP TEL L+ N+ + +L +
Sbjct: 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLV--PKELSNYKHLTLI 59
Query: 146 DLRRNQVTGIEDNAF 160
DL N+++ + + +F
Sbjct: 60 DLSNNRISTLSNQSF 74
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 146 bits (372), Expect = 6e-42
Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 3/128 (2%)
Query: 399 ACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYE 458
+ NPC ++G C + G F C+C GYTG RCEI++++C+S+ C+N+ATC+D I ++
Sbjct: 9 SLGANPCEHAGKC-INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ 67
Query: 459 CRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCV 518
C C PG++G C+ T CA +PC + RCLD + + CEC GF+G C V++ +
Sbjct: 68 CICMPGYEGVHCEVNTDECAS--SPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHIL 125
Query: 519 NHMCQNGG 526
+
Sbjct: 126 DAQKMVWN 133
Score = 136 bits (345), Expect = 3e-38
Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRF 419
+ +PC + G C ++C+C GY G CE ++ C NPC+N TC G F
Sbjct: 9 SLGANPCEHAGKCINTLGS-FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI-GEF 66
Query: 420 NCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAG 479
C C PGY G CE+N D+C S C +N C+D I ++C C GF G CQ
Sbjct: 67 QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILD 126
Query: 480 EYNPCRNG 487
N
Sbjct: 127 AQKMVWNH 134
Score = 135 bits (341), Expect = 1e-37
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 435 NIDDC--LSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLD 492
++D+C ++ CE+ C++ + ++EC+C G+ G C+ C NPC+N A CLD
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATCLD 61
Query: 493 HFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
+ C C PG+ GV+C VN D+C + C + G C+D IN++ C+C F G C++
Sbjct: 62 QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 109 bits (276), Expect = 1e-28
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 12/119 (10%)
Query: 477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYT 536
C+ NPC + +C++ + C+C G++G C ++V++CV++ CQN TC+D I ++
Sbjct: 8 CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ 67
Query: 537 CKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQGSNDYLCKCAPGYSGK 594
C C + G CE+ T C C + G C N++ C+C G++G
Sbjct: 68 CICMPGYEGVHCEV---------NTDECASSPCLHNGRCL--DKINEFQCECPTGFTGH 115
Score = 90.0 bits (224), Expect = 1e-21
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
N C +PC N C +QC C PGY G HCE D C +PC ++G C
Sbjct: 46 NECVSNPCQNDATCLDQIGE-FQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDK-INE 103
Query: 419 FNCECAPGYTGDRCEINIDDCLSHKCENN 447
F CEC G+TG C++++ L +
Sbjct: 104 FQCECPTGFTGHLCQVDLHHILDAQKMVW 132
Score = 52.6 bits (127), Expect = 1e-08
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQGSND 59
N TC+D I ++ C C + G CE+ T C C + G C N+
Sbjct: 55 NDATCLDQIGEFQCICMPGYEGVHCEV---------NTDECASSPCLHNGRCL--DKINE 103
Query: 60 YLCKCAPGYSG 70
+ C+C G++G
Sbjct: 104 FQCECPTGFTG 114
Score = 50.7 bits (122), Expect = 7e-08
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNG-ICFQPQGSND 59
+ G C++ + + C+C + G CEI + C + C+N C +
Sbjct: 17 HAGKCINTLGSFECQCLQGYTGPRCEI---------DVNECVSNPCQNDATCL--DQIGE 65
Query: 60 YLCKCAPGYSGV 71
+ C C PGY GV
Sbjct: 66 FQCICMPGYEGV 77
Score = 48.0 bits (115), Expect = 7e-07
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSG 409
+ C SPC + G C +QC C G+ G C+ +
Sbjct: 84 DECASSPCLHNGRCLDKINE-FQCECPTGFTGHLCQVDLHHILDAQKMVWN 133
Score = 39.5 bits (93), Expect = 5e-04
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEI 27
+ G C+D IN++ C+C F G C++
Sbjct: 93 HNGRCLDKINEFQCECPTGFTGHLCQV 119
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 156 bits (395), Expect = 1e-41
Identities = 57/231 (24%), Positives = 88/231 (38%), Gaps = 35/231 (15%)
Query: 87 ACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
CP C C V C ++ +P+ IP T L L N I + D F P+L +
Sbjct: 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDE-FASFPHLEE 60
Query: 145 LDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSR 204
L+L N V+ +E AF +R L L S+R
Sbjct: 61 LELNENIVSAVEPGAFNN----------------LFNLRTL-------------GLRSNR 91
Query: 205 IR-VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGL 263
++ + V + D+S N+I L ++ F L L L + N L I A +GL
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 264 KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC--DCGLAWLSEW 312
SL ++L +++ IP A + LH + L + + D L
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202
Score = 147 bits (372), Expect = 2e-38
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 9/162 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+LS N I + L +L ++ L +L ++ A GL LR++++ GN ++ + E
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAP- 340
F + + L + NPL CDC L W+ R C P ++ K P
Sbjct: 314 SVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPD 373
Query: 341 ---ASSFQCKE-KVSDEILSKCNA----CYKSPCTNQGVCEP 374
+ F C+ ++ D + + C G P
Sbjct: 374 VLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPP 415
Score = 87.5 bits (217), Expect = 2e-18
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++ +N + ++S+ FS L+ L QL L L I +AL+ L L ++ L +I+ I +
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193
Query: 282 GAFADLHAITHLAIGGNPL 300
+F L+ + L I P
Sbjct: 194 YSFKRLYRLKVLEISHWPY 212
Score = 76.7 bits (189), Expect = 5e-15
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNK-LQCIDRDALAGLKSLRIISLHGNDISMIP 280
L + I + +++F L +L L +S+ L + + L GL +L +S+ +++ +P
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVP 240
Query: 281 EGAFADLHAITHLAIGGNPL 300
A L + L + NP+
Sbjct: 241 YLAVRHLVYLRFLNLSYNPI 260
Score = 50.5 bits (121), Expect = 1e-06
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L T L + + + L L L+L N ++ IE +
Sbjct: 224 LNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Score = 48.9 bits (117), Expect = 3e-06
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT---TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
T + + L +P + L L+ N I I + L L ++ L Q+
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI-EGSMLHELLRLQEIQLVGGQLA 285
Query: 154 GIEDNAFEG 162
+E AF G
Sbjct: 286 VVEPYAFRG 294
Score = 44.7 bits (106), Expect = 6e-05
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
E+ L ++ + F L L L++ NQ+T +E++ F
Sbjct: 275 QEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318
Score = 31.2 bits (71), Expect = 1.2
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
L ++ N++ + + +F + NL L L N
Sbjct: 299 RVLNVSGNQLTTL-EESVFHSVGNLETLILDSNP 331
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 147 bits (372), Expect = 3e-40
Identities = 56/279 (20%), Positives = 101/279 (36%), Gaps = 53/279 (18%)
Query: 89 PSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLR 148
P C + +IP ++P T L L+ N + + S F P L LDL
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLS 60
Query: 149 RNQVTGIEDNAFEG--ENDQGCLGDNY-------CPPKCTCTVRVLFYDGRAGECYIAVE 199
R ++ IED A++ L N + +++ + +A
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-----TNLA-- 113
Query: 200 LFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL-SNFTFSPLSKLSQLILSYNKLQCIDRD 258
+ + + + ++++N I FS L+ L L LS NK+Q I
Sbjct: 114 ------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 259 ALAGLKSLRIISL----HGNDISMIPEGAFADLH-----------------------AIT 291
L L + +++L N ++ I GAF ++ ++
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227
Query: 292 HLAIGGNPLYCDC-GLAWLSEWVKR-DYVEPGIARCTEP 328
+ + NP C C + +LS W+ + E G A+C+
Sbjct: 228 KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 266
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 142 bits (360), Expect = 2e-39
Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 11/186 (5%)
Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFN 420
C + C+ + E + D C +PC+N G CK G +
Sbjct: 12 CMEETCSYEEARE------VFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDG-LGEYT 64
Query: 421 CECAPGYTGDRCEINIDD-CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAG 479
C C G+ G CE+ C + + C + + C CA G+
Sbjct: 65 CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFS-GVNCTVNVDDCVNHMCQNGGTCVDGINDYTCK 538
PC S + G + D +N +D +
Sbjct: 125 --YPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPER 182
Query: 539 CEGDFV 544
+ +
Sbjct: 183 GDNNLT 188
Score = 129 bits (327), Expect = 6e-35
Identities = 23/174 (13%), Positives = 41/174 (23%), Gaps = 17/174 (9%)
Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYEC 459
C C + + D C + C+N C D + Y C
Sbjct: 12 CMEETCSYEEAR------EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTC 65
Query: 460 RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN 519
C GF+G+ C+ T + C + + C C G++ +
Sbjct: 66 TCLEGFEGKNCELFTRKLC-SLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124
Query: 520 HMCQNGGTCVDGINDYTCKC-EGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNG 572
+ C + G+ +N
Sbjct: 125 YPCGKQTLERRKRSVAQATSSSGEAPDSITWK---------PYDAADLDPTENP 169
Score = 112 bits (282), Expect = 9e-29
Identities = 30/155 (19%), Positives = 43/155 (27%), Gaps = 6/155 (3%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF-MIDACYGNPCRNSGTCKLLEE 416
+ C SPC NQG C+ Y C C G+ G++CE C + C E+
Sbjct: 42 GDQCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH-EEQ 99
Query: 417 GRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGF-QGEFCQTKTP 475
C CA GYT + C + + G
Sbjct: 100 NSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYD 159
Query: 476 FCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNC 510
+P N LD + +
Sbjct: 160 AADL--DPTENPFDLLDFNQTQPERGDNNLTRIVG 192
Score = 101 bits (254), Expect = 5e-25
Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 13/156 (8%)
Query: 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
L +C + + + C +PC+N +C D YT
Sbjct: 7 HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCET--SPCQNQGKCKDGLGEYT 64
Query: 499 CECTPGFSGVNCTVNVDD-CVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMM 557
C C GF G NC + C C + N C C +
Sbjct: 65 CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK------- 117
Query: 558 YPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
P + C + + + + G +
Sbjct: 118 --ACIPTGPYPCGKQTLER-RKRSVAQATSSSGEAP 150
Score = 76.7 bits (189), Expect = 3e-16
Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
C + + N + D C CQN G C DG+ +YTC C
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 542 DFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
F GK CE+ C N +C CA GY+ +
Sbjct: 70 GFEGKNCEL---FTRKLCSLDNGDCDQFCHEEQ-------NSVVCSCARGYTLAD 114
Score = 47.1 bits (112), Expect = 3e-06
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSND 59
N G C DG+ +YTC C F GK CE+ C N
Sbjct: 52 NQGKCKDGLGEYTCTCLEGFEGKNCEL---FTRKLCSLDNGDCDQFCHEEQ-------NS 101
Query: 60 YLCKCAPGYSG 70
+C CA GY+
Sbjct: 102 VVCSCARGYTL 112
Score = 42.0 bits (99), Expect = 2e-04
Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 10/70 (14%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
C + N C C + P + C + + +
Sbjct: 91 CDQFCHEEQNSVVCSCARGYTLADNGK---------ACIPTGPYPCGKQTLER-RKRSVA 140
Query: 61 LCKCAPGYSG 70
+ G +
Sbjct: 141 QATSSSGEAP 150
Score = 34.0 bits (78), Expect = 0.091
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 12/71 (16%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH-DCKNGICFQPQGSND 59
+ + + +TSPCQ+ CK+G+ +
Sbjct: 14 EETCSYEEAREVFEDSDKTNEFWNKYK----DGDQCETSPCQNQGKCKDGL-------GE 62
Query: 60 YLCKCAPGYSG 70
Y C C G+ G
Sbjct: 63 YTCTCLEGFEG 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 139 bits (353), Expect = 5e-37
Identities = 58/270 (21%), Positives = 100/270 (37%), Gaps = 73/270 (27%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTT------------------------ELI 121
A CP GC C V CS GLK +PK+I TT L+
Sbjct: 25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALV 84
Query: 122 LNDNEIGKIKSDGLFGRLP---------------------NLIKLDLRRNQVTGIEDNAF 160
L +N+I KI + F L +L++L + N++ + F
Sbjct: 85 LVNNKISKI-HEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVF 143
Query: 161 EG----------ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
G N L ++ P +++ L S +++
Sbjct: 144 SGLRNMNCIEMGGN---PLENSGFEPGAFDGLKL-------------NYLRISEAKLTGI 187
Query: 211 VGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIIS 270
+ P + L +N+I + SKL +L L +N+++ I+ +L+ L +LR +
Sbjct: 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247
Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L N +S +P G DL + + + N +
Sbjct: 248 LDNNKLSRVPAG-LPDLKLLQVVYLHTNNI 276
Score = 89.3 bits (222), Expect = 1e-19
Identities = 36/167 (21%), Positives = 54/167 (32%), Gaps = 39/167 (23%)
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
+P+L L + + CP C C +RV+
Sbjct: 8 ETTSGIPDLDSLPPTYSAM---------------------CPFGCHCHLRVVQ------- 39
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
C S + + T DL NN I L F L L L+L NK+
Sbjct: 40 C--------SDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
I A + L+ L+ + + N + IP + L L I N +
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL---VELRIHDNRI 135
Score = 64.7 bits (158), Expect = 2e-11
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 9/85 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK------SLRIISLHGND 275
L NN++ + L L + L N + + + + ISL N
Sbjct: 247 HLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305
Query: 276 ISM--IPEGAFADLHAITHLAIGGN 298
+ + F + + G
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 47.3 bits (113), Expect = 7e-06
Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 50/136 (36%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
EL L++N++ ++ GL L L + L N +T + N F
Sbjct: 244 RELHLDNNKLSRV-PAGLPD-LKLLQVVYLHTNNITKVGVNDF----------------- 284
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGF--LSNFT 235
C + + + L NN + + + T
Sbjct: 285 ----------------CPVGFGVKRAYYN-------------GISLFNNPVPYWEVQPAT 315
Query: 236 FSPLSKLSQLILSYNK 251
F ++ + K
Sbjct: 316 FRCVTDRLAIQFGNYK 331
Score = 39.6 bits (93), Expect = 0.002
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 106 LKEIPKDIPLYT--TELILNDNEIGKIKSD-----GLFGRLPNLIKLDLRRNQVT--GIE 156
L +P +P + L+ N I K+ + G + + L N V ++
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312
Query: 157 DNAFEG 162
F
Sbjct: 313 PATFRC 318
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 131 bits (331), Expect = 4e-36
Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 45/178 (25%)
Query: 398 DACYGNPCRNSGTCK-LLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
D C NPC N G C L +G F+CEC G+T C ++ + +A
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSA-------- 52
Query: 457 YECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCL-------DHFSHYTCECTPGFSGVN 509
C P NPC NG C D F Y C+C GF+G++
Sbjct: 53 --GPCTP------------------NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIH 92
Query: 510 CTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH 567
C N+++C C+NGG C D + +Y+C+C G+F+G+ C+ + HH
Sbjct: 93 CQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQY---------KGGGHHHH 141
Score = 127 bits (322), Expect = 6e-35
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 361 CYKSPCTNQGVC-EPLPERQYQCRCTPGYHGQHCEFMIDA------------CYGNPCRN 407
C +PC N G+C L + + C C G+ +C +++ C NPC N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 408 SGTCKLLEEGR------FNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRC 461
GTC++ E R + C+C G+ G C+ NI++C C+N C DL+ Y C C
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122
Query: 462 APGFQGEFCQTKTPFCAGEYN 482
F G CQ K ++
Sbjct: 123 PGEFMGRNCQYKGGGHHHHHH 143
Score = 86.7 bits (215), Expect = 2e-20
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 348 EKVSDEILSKCNACYKSPCTNQGVCEPLPERQ------YQCRCTPGYHGQHCEFMIDACY 401
+E + C +PC N G CE + Y C+C G++G HC+ I+ C
Sbjct: 42 VASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECE 101
Query: 402 GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSH 442
PC+N G C L ++CEC + G C+ H
Sbjct: 102 VEPCKNGGICTDL-VANYSCECPGEFMGRNCQYKGGGHHHH 141
Score = 60.1 bits (146), Expect = 4e-11
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 515 DDCVNHMCQNGGTCVDGI--NDYTCKCEGDFVGKFCEI---APFVAMMYPQTSPCQHHDC 569
D C + C+NGG C+ G+ ++C+C F C PC + C
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 570 KNG-ICFQPQGS-----NDYLCKCAPGYSGK 594
NG C + Y+CKC G++G
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGI 91
Score = 49.7 bits (119), Expect = 2e-07
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 1 NGGTCVDGI--NDYTCKCEGDFVGKFCEI---APFVAMMYPQTSPCQHHDCKNG-ICFQP 54
NGG C+ G+ ++C+C F C PC + C NG C
Sbjct: 10 NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEIS 69
Query: 55 QGS-----NDYLCKCAPGYSGV 71
+ Y+CKC G++G+
Sbjct: 70 EAYRGDTFIGYVCKCPRGFNGI 91
Score = 45.1 bits (107), Expect = 7e-06
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 19/79 (24%)
Query: 1 NGGTCV-------DGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNG-ICF 52
NGGTC D Y CKC F G C+ + C+ CKNG IC
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH---------NINECEVEPCKNGGICT 112
Query: 53 QPQGSNDYLCKCAPGYSGV 71
+Y C+C + G
Sbjct: 113 --DLVANYSCECPGEFMGR 129
Score = 43.6 bits (103), Expect = 2e-05
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH 44
NGG C D + +Y+C+C G+F+G+ C+ + HH
Sbjct: 107 NGGICTDLVANYSCECPGEFMGRNCQY---------KGGGHHHH 141
Score = 32.0 bits (73), Expect = 0.20
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 13/64 (20%)
Query: 39 SPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTR 98
+PC++ GIC + C+C G++ +C S +
Sbjct: 6 NPCEN----GGICLPGLADGSFSCECPDGFTDP---------NCSSVVEVASDEEEPTSA 52
Query: 99 VDCS 102
C+
Sbjct: 53 GPCT 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 135 bits (342), Expect = 6e-36
Identities = 33/125 (26%), Positives = 54/125 (43%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L N+I + F L L +L+L N++ + A L L + L N++S +P
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
A A L A+ +L + NP CDC L W+++ C+ P + + L A
Sbjct: 219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA 278
Query: 342 SSFQC 346
+ Q
Sbjct: 279 NDLQG 283
Score = 88.9 bits (221), Expect = 1e-19
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 88 CPSGCSCDG---TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
CP C C C Q+GL+ +P IP + + L+ N I + F NL
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHV-PAASFRACRNLTI 60
Query: 145 LDLRRNQVTGIEDNAFEG 162
L L N + I+ AF G
Sbjct: 61 LWLHSNVLARIDAAAFTG 78
Score = 85.4 bits (212), Expect = 1e-18
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 222 DLSNN-QIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
DLS+N Q+ + TF L +L L L LQ + GL +L+ + L N + +P
Sbjct: 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 281 EGAFADLHAITHLAIGGNPL 300
+ F DL +THL + GN +
Sbjct: 146 DDTFRDLGNLTHLFLHGNRI 165
Score = 83.9 bits (208), Expect = 4e-18
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYV-GNYPVSTMYRDLSNNQIGFLS 232
CP C C E + ++ V P ++ L N+I +
Sbjct: 2 CPGACVCY----------NEPKVTTSCPQQGLQA---VPVGIPAASQRIFLHGNRISHVP 48
Query: 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN-DISMIPEGAFADLHAIT 291
+F L+ L L N L ID A GL L + L N + + F L +
Sbjct: 49 AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 292 HLAIGGNPL 300
L + L
Sbjct: 109 TLHLDRCGL 117
Score = 48.8 bits (117), Expect = 2e-06
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L L DN + + D F L NL L L N+++ + + AF G
Sbjct: 132 QYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175
Score = 48.5 bits (116), Expect = 3e-06
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
T L L+ N I + + F L +L +L L +N+V + +AF
Sbjct: 156 THLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Score = 46.1 bits (110), Expect = 1e-05
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L L+ + ++ GLF L L L L+ N + + D+ F
Sbjct: 108 HTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Score = 42.7 bits (101), Expect = 2e-04
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L+L+ N + + F L L+ L L N ++ + A
Sbjct: 180 DRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAP 223
Score = 30.3 bits (69), Expect = 1.7
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN 150
L L N + + L L L L N
Sbjct: 204 MTLYLFANNLSAL-PTEALAPLRALQYLRLNDN 235
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 134 bits (340), Expect = 8e-36
Identities = 64/281 (22%), Positives = 106/281 (37%), Gaps = 58/281 (20%)
Query: 86 AACPSGCSCDGT--RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLI 143
CSC+ VDCS + L IP +IP T +L L N++ + F RL L
Sbjct: 6 KKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSL-PSKAFHRLTKLR 64
Query: 144 KLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSS 203
L L N++ + F+ + L + + +
Sbjct: 65 LLYLNDNKLQTLPAGIFKELKN---LET--------------------------LWVTDN 95
Query: 204 RIR-VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAG 262
+++ + V + V+ L NQ+ L F L+KL+ L L YN+LQ + +
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 263 LKSLRIISLHGNDISMIPEGAFADL------------------------HAITHLAIGGN 298
L SL+ + L+ N + +PEGAF L + L + N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 299 PLYCDC-GLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLT 338
P C C G+ ++++W+K+ E T K +L
Sbjct: 216 PWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVLE 256
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 140 bits (356), Expect = 1e-35
Identities = 39/239 (16%), Positives = 62/239 (25%), Gaps = 62/239 (25%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED----------------NAFE 161
L + + ++ F L L+ LD+ D N+F+
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 162 GENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR 221
+ + L
Sbjct: 462 DNTLSNVFANTT-------NLTFL------------------------------------ 478
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS Q+ +S F L +L L +S+N L +D L SL + N I
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV---EPGIARCTEPASMRDKLLL 337
++ + N + C C +WVK C P M L+L
Sbjct: 539 ILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVL 597
Score = 91.2 bits (227), Expect = 2e-19
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
C V + Y C ++S + P ST DLS N + L +
Sbjct: 3 SLNPCIEVVPNITYQ-----C--------MDQKLSKVPDDIPSSTKNIDLSFNPLKILKS 49
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
++FS S+L L LS +++ I+ A GL L + L GN I G+F+ L ++ +L
Sbjct: 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109
Query: 294 AIGGNPL 300
L
Sbjct: 110 VAVETKL 116
Score = 90.9 bits (226), Expect = 2e-19
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
P C + L ++P DIP T + L+ N + +KS F L LDL
Sbjct: 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSY-SFSNFSELQWLDL 63
Query: 148 RRNQVTGIEDNAFEG 162
R ++ IED A+ G
Sbjct: 64 SRCEIETIEDKAWHG 78
Score = 87.0 bits (216), Expect = 4e-18
Identities = 19/79 (24%), Positives = 34/79 (43%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS +I + + + L LS LIL+ N +Q + +GL SL + ++ +
Sbjct: 62 DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121
Query: 282 GAFADLHAITHLAIGGNPL 300
L + L + N +
Sbjct: 122 FPIGQLITLKKLNVAHNFI 140
Score = 87.0 bits (216), Expect = 4e-18
Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 22/192 (11%)
Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN-- 172
+ E L F L N+ + L + +ED + +
Sbjct: 261 VTIDEFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319
Query: 173 -YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
P ++ L L ++ +S+ P S Y DLS N + F
Sbjct: 320 KQFPTLDLPFLKSL-------------TLTMNKGSISFKKVALP-SLSYLDLSRNALSFS 365
Query: 232 SNFTFSPL--SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAFADLH 288
++S L + L L LS+N + GL+ L+ + + + + E AF L
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424
Query: 289 AITHLAIGGNPL 300
+ +L I
Sbjct: 425 KLLYLDISYTNT 436
Score = 79.3 bits (196), Expect = 1e-15
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L+ N I S +FS L+ L L+ KL ++ + L +L+ +++ N I
Sbjct: 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145
Query: 282 GA-FADLHAITHLAIGGNPL 300
A F++L + H+ + N +
Sbjct: 146 PAYFSNLTNLVHVDLSYNYI 165
Score = 76.6 bits (189), Expect = 7e-15
Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 26/197 (13%)
Query: 118 TELILNDNEIGKIKSD---GLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN----DQGCLG 170
+ L+ N I I + L + LD+ N + I+D AF+G L
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT---LR 212
Query: 171 DNY----CPPKCTCTV---RVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL 223
N+ C + V + +E+F S G V+ L
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP----SIMEGLCDVTIDEFRL 268
Query: 224 SNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA 283
+ F L+ +S + L+ ++ + + + + +S+ + P
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFP--- 323
Query: 284 FADLHAITHLAIGGNPL 300
DL + L + N
Sbjct: 324 TLDLPFLKSLTLTMNKG 340
Score = 73.9 bits (182), Expect = 5e-14
Identities = 31/183 (16%), Positives = 50/183 (27%), Gaps = 56/183 (30%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
+L + N I K F L NL+ +DL N + I N +
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF--------------- 175
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
+ P + D+S N I F+ + F
Sbjct: 176 ---------------------------------LRENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 238 PLSKLSQLILSYNKLQC-IDRDALAGLKSLRIISL------HGNDISMIPEGAFADLHAI 290
+ L +L L N I + L L L + L ++ + L +
Sbjct: 203 GIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 291 THL 293
T
Sbjct: 262 TID 264
Score = 70.1 bits (172), Expect = 8e-13
Identities = 35/217 (16%), Positives = 58/217 (26%), Gaps = 43/217 (19%)
Query: 106 LKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG------IED 157
+ I + EL L N L L L + E
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252
Query: 158 NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC-YIAVELFS--SRIRVSYYVGNY 214
+ EG C V + + + F + + G
Sbjct: 253 SIMEG----------------LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296
Query: 215 -----PVSTMYR----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKS 265
V ++ + Q+ F L L L L+ NK L S
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQL---KQFPTLDLPFLKSLTLTMNKGSIS--FKKVALPS 351
Query: 266 LRIISLHGNDISMIPEGAFADL--HAITHLAIGGNPL 300
L + L N +S +++DL +++ HL + N
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388
Score = 68.9 bits (169), Expect = 2e-12
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 222 DLSNNQIGFLS-NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI----ISLHGNDI 276
++++N I FS L+ L + LSYN +Q I + L L+ + + N I
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193
Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
I + AF + + L + GN
Sbjct: 194 DFIQDQAFQGIK-LHELTLRGNFN 216
Score = 49.6 bits (119), Expect = 2e-06
Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 55/207 (26%)
Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
+K + + L + ++ + LP L L L N+ +
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQF----PTLDLPFLKSLTLTMNKGSISFKKVA---- 348
Query: 165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLS 224
P ++ L L + + S Y DL
Sbjct: 349 ---------LP-----SLSYLD-------------LSRNALSFSG-------CCSYSDLG 374
Query: 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCID-----------RDALAGLKSLRIISLHG 273
N + L + +F+ +S + +LQ +D A L+ L + +
Sbjct: 375 TNSLRHL-DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
+ + +G F L ++ L + GN
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Score = 43.5 bits (103), Expect = 2e-04
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 105 GLKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
L++I + L ++ N + + + +L +L LD N++ +
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIETSKGILQH 542
Query: 162 GEN 164
Sbjct: 543 FPK 545
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 130 bits (329), Expect = 2e-35
Identities = 45/192 (23%), Positives = 66/192 (34%), Gaps = 26/192 (13%)
Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFN 420
+ G E + C Y+G C + C + N
Sbjct: 2 RGSHHHHHHGSIE----GRSAVTCDDYYYGFGCN--KFCRPRDDFFGHYAC----DQNGN 51
Query: 421 CECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE 480
C G+ G C I C + +C +CRC G+QG +C P
Sbjct: 52 KTCMEGWMGPECNRAI--CRQGCSPKHGSCKL---PGDCRCQYGWQGLYCDKCIP----- 101
Query: 481 YNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHM-CQNGGTCVD-GINDYTCK 538
+P C + + C C + G C +++ C H C NGGTC + G + Y C
Sbjct: 102 -HPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCS 157
Query: 539 CEGDFVGKFCEI 550
C + G CEI
Sbjct: 158 CPEGYSGPNCEI 169
Score = 86.6 bits (215), Expect = 5e-20
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
C + G C+ CRC G+ G +C D C +P G C
Sbjct: 66 AICRQGCSPKHGSCK----LPGDCRCQYGWQGLYC----DKCIPHPGCVHGICN----EP 113
Query: 419 FNCECAPGYTGDRCEINIDDCLSHK-CENNATCVDLIQ-AYECRCAPGFQGEFCQ 471
+ C C + G C+ +++ C +H+ C N TC + Y+C C G+ G C+
Sbjct: 114 WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 70.1 bits (172), Expect = 2e-14
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACY-GNPCRNSGTCKLLEE 416
C+ C P G+C +QC C + GQ C+ ++ C PC N GTC
Sbjct: 96 CDKCIPHPGCVHGICN----EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGP 151
Query: 417 GRFNCECAPGYTGDRCEI 434
++ C C GY+G CEI
Sbjct: 152 DKYQCSCPEGYSGPNCEI 169
Score = 39.3 bits (92), Expect = 0.001
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
G C + + C CE ++ G+ C+ H C NG G + Y
Sbjct: 106 VHGICNEP---WQCLCETNWGGQLCDK--------DLNYCGTHQPCLNGGTCSNTGPDKY 154
Query: 61 LCKCAPGYSG 70
C C GYSG
Sbjct: 155 QCSCPEGYSG 164
Score = 31.2 bits (71), Expect = 0.55
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 1 NGGTCVD-GINDYTCKCEGDFVGKFCEI 27
NGGTC + G + Y C C + G CEI
Sbjct: 142 NGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 29.3 bits (66), Expect = 2.2
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 17/70 (24%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
G D + C ++G C A + H G C
Sbjct: 41 FGHYACDQ--NGNKTCMEGWMGPECNRAI------CRQGCSPKH----GSC-----KLPG 83
Query: 61 LCKCAPGYSG 70
C+C G+ G
Sbjct: 84 DCRCQYGWQG 93
Score = 28.5 bits (64), Expect = 3.9
Identities = 11/97 (11%), Positives = 19/97 (19%), Gaps = 27/97 (27%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
+ G+ C+ + G C D G+
Sbjct: 9 HHGSIE---GRSAVTCDDYYYGFGCN-----------KFCRPRDDFFGHYACDQNGN--- 51
Query: 61 LCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGT 97
C G+ G +C G+
Sbjct: 52 -KTCMEGWMGP---------ECNRAICRQGCSPKHGS 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 138 bits (351), Expect = 4e-35
Identities = 43/227 (18%), Positives = 74/227 (32%), Gaps = 37/227 (16%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
L L + + F L L L+L + + + F+G
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------------- 447
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR----DLSNNQIGFLSN 233
++ L L + + T+ R LS + +
Sbjct: 448 -LPALQHL-------------NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
F+ L ++ + LS+N+L +AL+ LK + ++L N IS+I L +
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTI 552
Query: 294 AIGGNPLYCDCGLAWLSEWVKR---DYVEPGIARCTEPASMRDKLLL 337
+ NPL C C + EW K + C P +R L
Sbjct: 553 NLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLS 599
Score = 119 bits (301), Expect = 1e-28
Identities = 40/217 (18%), Positives = 63/217 (29%), Gaps = 55/217 (25%)
Query: 86 AACPSGCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLI 143
+ C +C GL EIP +P T L + N + I++ F RL NL
Sbjct: 2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQN-TTFSRLINLT 60
Query: 144 KLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSS 203
LDL R Q+ I ++ F+ + L L ++
Sbjct: 61 FLDLTRCQIYWIHEDTFQS------QHR----------LDTL-------------VLTAN 91
Query: 204 RIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGL 263
+ ++ + L L + ID L
Sbjct: 92 PLIF---------------MAETALSGPKA--------LKHLFFIQTGISSIDFIPLHNQ 128
Query: 264 KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
K+L + L N IS I + L N +
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
Score = 91.2 bits (227), Expect = 2e-19
Identities = 31/194 (15%), Positives = 52/194 (26%), Gaps = 23/194 (11%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG----ENDQGCLGDN- 172
L L N I I L LD + N + + N L N
Sbjct: 132 ESLYLGSNHISSI-KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 173 --YCPPKCTC--TVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
P + L + G + +F + S +
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGG----TQNLLVIFKG------LKNSTIQSLWLGTFEDMDD 240
Query: 229 GFLSNFTFSPLSKLS--QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFAD 286
+S F L ++S + L + I + L+ + L +S +P G
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVG 299
Query: 287 LHAITHLAIGGNPL 300
L + L + N
Sbjct: 300 LSTLKKLVLSANKF 313
Score = 91.2 bits (227), Expect = 2e-19
Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 54/199 (27%)
Query: 106 LKEIPKDI--PLYTTELILNDNEIGKIKSDGL-FGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+ I L + + GL + +L I FEG
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRD 222
C +V + +
Sbjct: 251 L--------------CEMSVESI------------------------------------N 260
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
L + +S+ TF S L +L L+ L + L GL +L+ + L N + +
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQI 319
Query: 283 AFADLHAITHLAIGGNPLY 301
+ ++ ++THL+I GN
Sbjct: 320 SASNFPSLTHLSIKGNTKR 338
Score = 87.0 bits (216), Expect = 4e-18
Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 57/200 (28%)
Query: 106 LKEIPKDI-PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE 163
L E+P + L T +L+L+ N+ + P+L L ++ N E
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKG--------NTKRLE 340
Query: 164 NDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL 223
GCL + +R L DL
Sbjct: 341 LGTGCLENLE-------NLREL------------------------------------DL 357
Query: 224 SNNQIGFL--SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI-P 280
S++ I N LS L L LSYN+ + +A L ++ L + +
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417
Query: 281 EGAFADLHAITHLAIGGNPL 300
+ F +LH + L + + L
Sbjct: 418 QSPFQNLHLLKVLNLSHSLL 437
Score = 83.9 bits (208), Expect = 4e-17
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
I + L L L N + I + L+++ N I + +
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170
Query: 282 GAFADLHAITH--LAIGGNPL 300
+ L T+ L + GN +
Sbjct: 171 EDMSSLQQATNLSLNLNGNDI 191
Score = 38.8 bits (91), Expect = 0.005
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 105 GLKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
L I + L + L+ N + S L + L+L N ++ I +
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSS-SIEALSHLKGIY-LNLASNHISIILPSLLP 544
Query: 162 G 162
Sbjct: 545 I 545
Score = 31.5 bits (72), Expect = 0.83
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 106 LKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
L + L L L N I I L L ++LR+N
Sbjct: 512 LTSSSIEALSHLKGIYLNLASNHISII-LPSLLPILSQQRTINLRQNP 558
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 136 bits (343), Expect = 1e-34
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++S N + +F LS L +L + +++ I+R+A GL SL ++L N++S +P
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKR--DYVEPGIARCTEPASMRDKLLLTA 339
F L + L + NP CDC + WL+ W++ RC P MR + L+
Sbjct: 284 DLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEV 343
Query: 340 PASSFQCKE 348
+SFQC
Sbjct: 344 DQASFQCSA 352
Score = 91.7 bits (228), Expect = 7e-20
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 87 ACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
CPS CSC ++V C++RGL E+P+ IP T L L +N I I++ F L +L
Sbjct: 45 NCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQA-DTFRHLHHLEV 103
Query: 145 LDLRRNQVTGIEDNAFEG 162
L L RN + IE AF G
Sbjct: 104 LQLGRNSIRQIEVGAFNG 121
Score = 89.4 bits (222), Expect = 4e-19
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYV-GNYPVSTMYRDLSNNQIGFLS 232
CP C+C+ + V + V P +T Y +L N I +
Sbjct: 46 CPSVCSCSNQFS-----------KVVCTRRGLS---EVPQGIPSNTRYLNLMENNIQMIQ 91
Query: 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITH 292
TF L L L L N ++ I+ A GL SL + L N +++IP GAF L +
Sbjct: 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151
Query: 293 LAIGGNPL 300
L + NP+
Sbjct: 152 LWLRNNPI 159
Score = 85.2 bits (211), Expect = 8e-18
Identities = 24/77 (31%), Positives = 33/77 (42%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L N I + F+ L+ L+ L L N L I A L LR + L N I IP
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164
Query: 282 GAFADLHAITHLAIGGN 298
AF + ++ L +G
Sbjct: 165 YAFNRVPSLMRLDLGEL 181
Score = 49.7 bits (119), Expect = 2e-06
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+K++P PL EL ++ N +I G F L +L KL + +QV+ IE NAF+G
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264
Score = 47.8 bits (114), Expect = 8e-06
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 106 LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRR-NQVTGIEDNAFE 161
L IP Y + EL L +N I I F R+P+L++LDL ++ I + AFE
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193
Query: 162 G 162
G
Sbjct: 194 G 194
Score = 43.6 bits (103), Expect = 1e-04
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+L + ++++ I F L +L++L+L N ++ + + F
Sbjct: 245 KKLWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288
Score = 43.2 bits (102), Expect = 2e-04
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L L I + + L L +L++ N I +F G
Sbjct: 199 KYLNLGMCNIKDMPN---LTPLVGLEELEMSGNHFPEIRPGSFHG 240
Score = 30.1 bits (68), Expect = 2.6
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN 150
EL L N + + LF L L++L L N
Sbjct: 269 VELNLAHNNLSSL-PHDLFTPLRYLVELHLHHN 300
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 131 bits (331), Expect = 5e-34
Identities = 58/267 (21%), Positives = 88/267 (32%), Gaps = 89/267 (33%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTT------------------------ELI 121
CP C C V CS GL+++PKD+P T LI
Sbjct: 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 122 LNDNEIGKIKSDGLFGRL---------------------PNLIKLDLRRNQVTGIEDNAF 160
L +N+I KI S G F L L +L + N++T + + F
Sbjct: 83 LINNKISKI-SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 141
Query: 161 EG-------ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGN 213
G E LG N I F ++
Sbjct: 142 NGLNQMIVVE-----LGTN-----------------PLKSSGIENGAFQGMKKL------ 173
Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
Y +++ I + L++L L NK+ +D +L GL +L + L
Sbjct: 174 -----SYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
N IS + G+ A+ + L + N L
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 85.4 bits (212), Expect = 2e-18
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L N+I + + L+ L++L LS+N + +D +LA LR + L+ N + +P
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP- 256
Query: 282 GAFADLHAITHLAIGGNPL 300
G AD I + + N +
Sbjct: 257 GGLADHKYIQVVYLHNNNI 275
Score = 80.8 bits (200), Expect = 9e-17
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
LS N I + N + + L +L L+ NKL + LA K ++++ LH N+IS I
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGS 280
Query: 282 GAFA------DLHAITHLAIGGNPL 300
F + + +++ NP+
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPV 305
Score = 66.6 bits (163), Expect = 5e-12
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA------GLKSLRIISLHGND 275
L+NN++ + + + + L N + I + S +SL N
Sbjct: 246 HLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
Query: 276 ISM--IPEGAFADLHAITHLAIGGN 298
+ I F ++ + +G
Sbjct: 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 47.7 bits (114), Expect = 5e-06
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 50/136 (36%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
EL LN+N++ K+ GL + + L N ++ I N F CPP
Sbjct: 243 RELHLNNNKLVKV-PGGLAD-HKYIQVVYLHNNNISAIGSNDF-------------CPPG 287
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGF--LSNFT 235
+ L +N + + + T
Sbjct: 288 YNTKKASY------------SGV---------------------SLFSNPVQYWEIQPST 314
Query: 236 FSPLSKLSQLILSYNK 251
F + + + L K
Sbjct: 315 FRCVYVRAAVQLGNYK 330
Score = 41.9 bits (99), Expect = 4e-04
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 106 LKEIPKDIPLYT--TELILNDNEIGKIKSD-----GLFGRLPNLIKLDLRRNQV--TGIE 156
L ++P + + + L++N I I S+ G + + + L N V I+
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311
Query: 157 DNAFEG 162
+ F
Sbjct: 312 PSTFRC 317
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 127 bits (322), Expect = 7e-34
Identities = 42/126 (33%), Positives = 67/126 (53%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L N+I L F L L L+L+ NK+ C+ DA L +L ++SL+ N + I +
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
G F+ L AI + + NP CDC L WL++++ + +E ARCT P + +K + +
Sbjct: 146 GTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKS 205
Query: 342 SSFQCK 347
F+C
Sbjct: 206 KKFRCS 211
Score = 92.4 bits (230), Expect = 1e-21
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 85 DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
CP+ C+C VDC +GL EIP ++P TE+ L N I I G F L +
Sbjct: 2 SLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVI-PPGAFSPYKKLRR 60
Query: 145 LDLRRNQVTGIEDNAFEG 162
+DL NQ++ + +AF+G
Sbjct: 61 IDLSNNQISELAPDAFQG 78
Score = 38.5 bits (90), Expect = 0.003
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L+LN N+I ++ F L NL L L N++ I F
Sbjct: 107 QLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 127 bits (321), Expect = 7e-34
Identities = 40/127 (31%), Positives = 72/127 (56%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L++N++ + + F L L L+L N++ C+ D+ GL S+R++SL+ N I+ +
Sbjct: 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
GAF LH+++ L + NP C+C LAWL EW+++ + G RC +P +++ +
Sbjct: 147 GAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAI 206
Query: 342 SSFQCKE 348
F C +
Sbjct: 207 QDFTCDD 213
Score = 106 bits (266), Expect = 2e-26
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
ACP C C+GT VDCS + L +IP+ IP YT EL LN+NE +++ G+F +LP L K+
Sbjct: 3 LACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKI 62
Query: 146 DLRRNQVTGIEDNAFEG 162
+ N++T IE+ AFEG
Sbjct: 63 NFSNNKITDIEEGAFEG 79
Score = 38.9 bits (91), Expect = 0.002
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L+L N I + + F L ++ L L NQ+T + AF+
Sbjct: 108 KTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 130 bits (328), Expect = 8e-34
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 50/225 (22%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CPS CSC GT + C+ +GL +P IP T L L N++ + G+F +L L KL L
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSL 59
Query: 148 RRNQVT--GIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI 205
N ++ G + G T +++ L +L + +
Sbjct: 60 SSNGLSFKGCCSQSDFG----------------TTSLKYL-------------DLSFNGV 90
Query: 206 RVSYYVGNYPVSTMYRDLSN--------NQIGFLSNF-TFSPLSKLSQLILSYNKLQCID 256
+S+ + L + + +S F F L L L +S+ +
Sbjct: 91 IT--------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142
Query: 257 RDALAGLKSLRIISLHGN-DISMIPEGAFADLHAITHLAIGGNPL 300
GL SL ++ + GN F +L +T L + L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Score = 105 bits (263), Expect = 4e-25
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 29/145 (20%)
Query: 222 DLSNNQ-IGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
++ N F+ L L+ L LS +L+ + A L SL+++++ N+ +
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 281 EGAFADLH-------------------------AITHLAIGGNPLYCDCGLAWLSEWVKR 315
+ L+ ++ L + N C C +W+K
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275
Query: 316 ---DYVEPGIARCTEPASMRDKLLL 337
VE C P+ + +L
Sbjct: 276 QRQLLVEVERMECATPSDKQGMPVL 300
Score = 47.7 bits (114), Expect = 5e-06
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
T L L+ ++ ++ S F L +L L++ N ++ ++
Sbjct: 178 TFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Score = 44.6 bits (106), Expect = 5e-05
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L + N + +F L NL LDL + Q+ + AF
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Score = 43.8 bits (104), Expect = 9e-05
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L ++ N + + L +L LD N + + +
Sbjct: 202 QVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245
Score = 37.3 bits (87), Expect = 0.009
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301
+++ + L + + L L N + +P G F L +T L++ N L
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 132 bits (335), Expect = 8e-34
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS N + + +F L L +L + +++Q I+R+A L+SL I+L N+++++P
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVK--RDYVEPGIARCTEPASMRDKLLLTA 339
F LH + + + NP C+C + WLS W+K ARC P +++ + +
Sbjct: 273 DLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGEL 332
Query: 340 PASSFQCKE 348
+ F C
Sbjct: 333 DQNYFTCYA 341
Score = 89.4 bits (222), Expect = 3e-19
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 86 AACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLI 143
CPS CSC ++V C ++ L+E+P I T L L++N+I IK F L +L
Sbjct: 33 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV-NSFKHLRHLE 91
Query: 144 KLDLRRNQVTGIEDNAFEG 162
L L RN + IE AF G
Sbjct: 92 ILQLSRNHIRTIEIGAFNG 110
Score = 89.0 bits (221), Expect = 5e-19
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYV-GNYPVSTMYRDLSNNQIGFLS 232
CP C+C+ + V +R V +T +L NQI +
Sbjct: 35 CPSVCSCSNQFS-----------KVICVRKNLRE---VPDGISTNTRLLNLHENQIQIIK 80
Query: 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITH 292
+F L L L LS N ++ I+ A GL +L + L N ++ IP GAF L +
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140
Query: 293 LAIGGNPL 300
L + NP+
Sbjct: 141 LWLRNNPI 148
Score = 84.4 bits (209), Expect = 1e-17
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
LS N I + F+ L+ L+ L L N+L I A L L+ + L N I IP
Sbjct: 94 QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153
Query: 282 GAFADLHAITHLAIGGNP 299
AF + ++ L +G
Sbjct: 154 YAFNRIPSLRRLDLGELK 171
Score = 83.3 bits (206), Expect = 4e-17
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISL-HGNDISMIP 280
+L +N++ + N F LSKL +L L N ++ I A + SLR + L +S I
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177
Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLS 310
EGAF L + +L + L L L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLI 207
Score = 47.8 bits (114), Expect = 6e-06
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L+EIP PL EL L+ N + I G F L +L KL + ++Q+ IE NAF+
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253
Score = 46.7 bits (111), Expect = 2e-05
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDL-RRNQVTGIEDNAFEG 162
EL L +N I I F R+P+L +LDL +++ I + AFEG
Sbjct: 139 KELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Score = 43.6 bits (103), Expect = 1e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L L + +I + L L +LDL N ++ I +F+G
Sbjct: 188 RYLNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRPGSFQG 229
Score = 43.2 bits (102), Expect = 2e-04
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+L + ++I I F L +L++++L N +T + + F
Sbjct: 234 QKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277
Score = 29.3 bits (66), Expect = 4.3
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN 150
E+ L N + + LF L +L ++ L N
Sbjct: 258 VEINLAHNNLTLL-PHDLFTPLHHLERIHLHHN 289
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 129 bits (326), Expect = 2e-33
Identities = 59/211 (27%), Positives = 78/211 (36%), Gaps = 35/211 (16%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
A C N G C + C C G+HG HCE C C N G C
Sbjct: 148 QAECPGGCRNGGFCN----ERRICECPDGFHGPHCE--KALCT-PRCMNGGLC----VTP 196
Query: 419 FNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCA 478
C C PG+ G C+ S C N TC +C C PG +GE C+ C
Sbjct: 197 GFCICPPGFYGVNCDK---ANCSTTCFNGGTCFY---PGKCICPPGLEGEQCEISK--CP 248
Query: 479 GEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCK 538
PCRNG +C+ C+C+ G+ G C+ V + C GTC + C+
Sbjct: 249 ---QPCRNGGKCIG---KSKCKCSKGYQGDLCSKPVCEPG---CGAHGTCHEP---NKCQ 296
Query: 539 CEGDFVGKFCEIAPFVAMMYPQTSPCQHHDC 569
C+ + G+ C HH
Sbjct: 297 CQEGWHGRHCNK----RYEASLIGTKHHHHH 323
Score = 125 bits (315), Expect = 6e-32
Identities = 57/237 (24%), Positives = 72/237 (30%), Gaps = 50/237 (21%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
++G + C+ A CRN G C
Sbjct: 118 AFEVDVIVMNSEGNT-------ILKTPQNAIFFKTCQ---QAECPGGCRNGGFC----NE 163
Query: 418 RFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFC 477
R CEC G+ G CE + +C N CV C C PGF G C C
Sbjct: 164 RRICECPDGFHGPHCEK---ALCTPRCMNGGLCVT---PGFCICPPGFYGVNCDKAN--C 215
Query: 478 AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTC 537
+ C NG C C C PG G C + C C+NGG C+ C
Sbjct: 216 S---TTCFNGGTCFY---PGKCICPPGLEGEQC--EISKCPQP-CRNGGKCI---GKSKC 263
Query: 538 KCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK 594
KC + G C C H G C C+C G+ G+
Sbjct: 264 KCSKGYQGDLCSK-------PVCEPGCGAH----GTC-----HEPNKCQCQEGWHGR 304
Score = 89.1 bits (221), Expect = 2e-19
Identities = 40/180 (22%), Positives = 51/180 (28%), Gaps = 33/180 (18%)
Query: 416 EGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP 475
G + + G C D + + + + CQ
Sbjct: 93 LGTVPHKASVVQVGFPCLGKQDGVAAFEV-DVIVMNSEGNTILKTPQNAIFFKTCQ--QA 149
Query: 476 FCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDY 535
C CRNG C + CEC GF G +C + C NGG CV
Sbjct: 150 EC---PGGCRNGGFCNE---RRICECPDGFHGPHCEKALCTPR---CMNGGLCV---TPG 197
Query: 536 TCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQGSNDYLCKCAPGYSGK 594
C C F G C+ C N G CF C C PG G+
Sbjct: 198 FCICPPGFYGVNCDK------------ANCSTTCFNGGTCF-----YPGKCICPPGLEGE 240
Score = 42.1 bits (99), Expect = 3e-04
Identities = 15/113 (13%), Positives = 24/113 (21%), Gaps = 26/113 (23%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
P C GV + N +
Sbjct: 90 VPLLGTVPHKASVVQVGFPCLGKQDGVAA----------FEVDVIVMNSEGNTILKTPQN 139
Query: 542 DFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK 594
K C+ A C++ G C + +C+C G+ G
Sbjct: 140 AIFFKTCQQA-------ECPGGCRNG----GFCNER-----RICECPDGFHGP 176
Score = 39.1 bits (91), Expect = 0.003
Identities = 26/101 (25%), Positives = 28/101 (27%), Gaps = 31/101 (30%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQGSND 59
NGG CV C C F G C+ C N G CF
Sbjct: 189 NGGLCV---TPGFCICPPGFYGVNCDK------------ANCSTTCFNGGTCF-----YP 228
Query: 60 YLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVD 100
C C PG G C I CP C G +
Sbjct: 229 GKCICPPGLEGE---------QCEIS-KCPQPCRNGGKCIG 259
Score = 38.7 bits (90), Expect = 0.004
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 19/70 (27%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
NGGTC C C G+ CEI PC++ G C
Sbjct: 221 NGGTCF---YPGKCICPPGLEGEQCEI-------SKCPQPCRNG----GKC-----IGKS 261
Query: 61 LCKCAPGYSG 70
CKC+ GY G
Sbjct: 262 KCKCSKGYQG 271
Score = 37.1 bits (86), Expect = 0.011
Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 19/70 (27%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
NGG C+ CKC + G C C H G C
Sbjct: 253 NGGKCI---GKSKCKCSKGYQGDLCSK-------PVCEPGCGAH----GTC-----HEPN 293
Query: 61 LCKCAPGYSG 70
C+C G+ G
Sbjct: 294 KCQCQEGWHG 303
Score = 34.8 bits (80), Expect = 0.062
Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 26/97 (26%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
+ N + K C+ A C++ G C +
Sbjct: 122 DVIVMNSEGNTILKTPQNAIFFKTCQQA-------ECPGGCRNG----GFCNER-----R 165
Query: 61 LCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGT 97
+C+C G+ G C C C G
Sbjct: 166 ICECPDGFHGP---------HCEKA-LCTPRCMNGGL 192
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 123 bits (310), Expect = 3e-33
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 2/126 (1%)
Query: 403 NPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCA 462
C E + + D C + C+N C D + Y C C
Sbjct: 10 RECMEETCSYE-EAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68
Query: 463 PGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMC 522
GF+G+ C+ T + C + + C C G++ + + C
Sbjct: 69 EGFEGKNCELFTRKLC-SLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC 127
Query: 523 QNGGTC 528
Sbjct: 128 GKQTLE 133
Score = 107 bits (270), Expect = 8e-28
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFN 420
C + C+ + E + D C +PC+N G CK G +
Sbjct: 12 CMEETCSYEEARE------VFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDG-LGEYT 64
Query: 421 CECAPGYTGDRCEINIDD-CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAG 479
C C G+ G CE+ C + + C + + C CA G+
Sbjct: 65 CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124
Query: 480 EYNPCRNGARC 490
PC
Sbjct: 125 --YPCGKQTLE 133
Score = 104 bits (262), Expect = 9e-27
Identities = 24/135 (17%), Positives = 35/135 (25%), Gaps = 12/135 (8%)
Query: 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
L +C + + + C +PC+N +C D YT
Sbjct: 7 HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCET--SPCQNQGKCKDGLGEYT 64
Query: 499 CECTPGFSGVNCTVNVDD-CVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMM 557
C C GF G NC + C C + N C C +
Sbjct: 65 CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK------- 117
Query: 558 YPQTSPCQHHDCKNG 572
P + C
Sbjct: 118 --ACIPTGPYPCGKQ 130
Score = 87.7 bits (218), Expect = 7e-21
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID-ACYGNPCRNSGTCKLLEE 416
+ C SPC NQG C+ +Y C C G+ G++CE C + C E+
Sbjct: 42 GDQCETSPCQNQGKCKDGL-GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH-EEQ 99
Query: 417 GRFNCECAPGYTGDRCEINIDDCLSHKCENNATC 450
C CA GYT + C
Sbjct: 100 NSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 86.6 bits (215), Expect = 2e-20
Identities = 27/114 (23%), Positives = 35/114 (30%), Gaps = 11/114 (9%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
C + + N + D C CQN G C DG+ +YTC C
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 542 DFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSNDYLCKCAPGYSGK 594
F GK CE+ C N +C CA GY+
Sbjct: 70 GFEGKNCELFTRK---LCSLDNGDCDQFCHEEQ-------NSVVCSCARGYTLA 113
Score = 53.1 bits (128), Expect = 1e-08
Identities = 8/52 (15%), Positives = 9/52 (17%), Gaps = 1/52 (1%)
Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCK 412
C C C C GY PC +
Sbjct: 84 CSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134
Score = 50.8 bits (122), Expect = 6e-08
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSND 59
N G C DG+ +YTC C F GK CE+ C N
Sbjct: 52 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRK---LCSLDNGDCDQFCHEEQ-------NS 101
Query: 60 YLCKCAPGYSG 70
+C CA GY+
Sbjct: 102 VVCSCARGYTL 112
Score = 40.0 bits (94), Expect = 3e-04
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH-DCKNGICFQPQGSND 59
+ + + +TSPCQ+ CK+G+ +
Sbjct: 14 EETCSYEEAREVFEDSDKTNEFWNKYK----DGDQCETSPCQNQGKCKDGL-------GE 62
Query: 60 YLCKCAPGYSGV 71
Y C C G+ G
Sbjct: 63 YTCTCLEGFEGK 74
Score = 36.9 bits (86), Expect = 0.004
Identities = 6/49 (12%), Positives = 9/49 (18%), Gaps = 9/49 (18%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNG 49
C + N C C + P + C
Sbjct: 91 CDQFCHEEQNSVVCSCARGYTLADNGK---------ACIPTGPYPCGKQ 130
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 131 bits (331), Expect = 3e-32
Identities = 49/243 (20%), Positives = 76/243 (31%), Gaps = 39/243 (16%)
Query: 118 TELILNDNEIGKI-KSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG-EN----DQGCLGD 171
L+L + + S F L NL LDL N + I D+ EG E D L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD---LQH 513
Query: 172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
N L + + + +L +N +
Sbjct: 514 NN-----------LARLWKHANPGGPIYFLKGLSHLHIL-----------NLESNGFDEI 551
Query: 232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFAD-LHAI 290
F L +L + L N L + SL+ ++L N I+ + + F +
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611
Query: 291 THLAIGGNPLYCDCG-LAWLSEWVKRDYVE----PGIARCTEPASMRDKLLLTAPASSFQ 345
T L + NP C C +AW W+ + C P + SS
Sbjct: 612 TELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS-- 669
Query: 346 CKE 348
CK+
Sbjct: 670 CKD 672
Score = 96.6 bits (241), Expect = 4e-21
Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 28/185 (15%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
T+ ++ + KI D F L L L++ N + GI+ N F G
Sbjct: 308 TKQSISLASLPKI-DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----------LI-- 353
Query: 178 CTCTVRVLFYDG-RAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF 236
++ L + E F S + + P+ + +L+ N+I + + F
Sbjct: 354 ---NLKYLSLSNSFTSLRTLTNETFVS-------LAHSPLHIL--NLTKNKISKIESDAF 401
Query: 237 SPLSKLSQLILSYNKL-QCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
S L L L L N++ Q + GL+++ I L N + +FA + ++ L +
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Query: 296 GGNPL 300
L
Sbjct: 462 RRVAL 466
Score = 91.6 bits (228), Expect = 2e-19
Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 32/192 (16%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
T L L+ N + + + F LP L L N + + ++ G
Sbjct: 251 TMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF------------- 296
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR----DLSNNQIGFLSN 233
VR L + + + + + ++ + ++ +N I + +
Sbjct: 297 ---NVRYLNLKR----SFTKQSISLASLP---KIDDFSFQWLKCLEHLNMEDNDIPGIKS 346
Query: 234 FTFSPLSKLSQLILSYNKLQC--IDRDALAGL--KSLRIISLHGNDISMIPEGAFADLHA 289
F+ L L L LS + + + L L I++L N IS I AF+ L
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406
Query: 290 ITHLAIGGNPLY 301
+ L +G N +
Sbjct: 407 LEVLDLGLNEIG 418
Score = 87.7 bits (218), Expect = 3e-18
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 92 CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
C+ DCS L ++P D+P T L L N++ ++ + F R L LD+ N
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNT 60
Query: 152 VTGIEDNAFEG 162
++ +E +
Sbjct: 61 ISKLEPELCQK 71
Score = 87.4 bits (217), Expect = 3e-18
Identities = 42/196 (21%), Positives = 64/196 (32%), Gaps = 52/196 (26%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
+L L+ N+I + S G F + L L L Q+ C
Sbjct: 174 KKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKL-------------CLEL 219
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
++R L LSN+Q+ SN TF
Sbjct: 220 ANTSIRNL------------------------------------SLSNSQLSTTSNTTFL 243
Query: 238 PL--SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
L + L+ L LSYN L + D+ A L L L N+I + + L + +L +
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Query: 296 GGNPLYCDCGLAWLSE 311
+ LA L +
Sbjct: 304 KRSFTKQSISLASLPK 319
Score = 87.4 bits (217), Expect = 3e-18
Identities = 20/86 (23%), Positives = 45/86 (52%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
P + +L++NQ+ L F+ S+L+ L + +N + ++ + L L++++L N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
++S + + FA +T L + N +
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSI 109
Score = 87.0 bits (216), Expect = 5e-18
Identities = 20/79 (25%), Positives = 28/79 (35%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D+ N I L L L L L +N+L + A +L + L N I I
Sbjct: 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114
Query: 282 GAFADLHAITHLAIGGNPL 300
F + L + N L
Sbjct: 115 NPFVKQKNLITLDLSHNGL 133
Score = 86.2 bits (214), Expect = 8e-18
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L +N++ LS+ TF+ + L++L L N +Q I + K+L + L N +S
Sbjct: 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138
Query: 282 GAFADLHAITHLAIGGNPL 300
G L + L + N +
Sbjct: 139 GTQVQLENLQELLLSNNKI 157
Score = 85.4 bits (212), Expect = 1e-17
Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 61/194 (31%)
Query: 118 TELILNDNEIGKI--KSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP 175
L LN+ ++G + L ++ L L +Q++ + F G
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF-----LGL------- 245
Query: 176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFT 235
+ +L DLS N + + N +
Sbjct: 246 --KWTNLTML------------------------------------DLSYNNLNVVGNDS 267
Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN---------DISMIPEGAFAD 286
F+ L +L L YN +Q + +L GL ++R ++L + + I + +F
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Query: 287 LHAITHLAIGGNPL 300
L + HL + N +
Sbjct: 328 LKCLEHLNMEDNDI 341
Score = 81.2 bits (201), Expect = 4e-16
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA--GLKSLRIISLHGNDISMI 279
DLS+N + T L L +L+LS NK+Q + + L SL+ + L N I
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186
Query: 280 PEGAFADLHAITHLAIGGNPL 300
G F + + L + L
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQL 207
Score = 80.4 bits (199), Expect = 6e-16
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L +N I + N F L L LS+N L L++L+ + L N I +
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162
Query: 282 GAFADLH--AITHLAIGGNPL 300
++ L + N +
Sbjct: 163 EELDIFANSSLKKLELSSNQI 183
Score = 75.8 bits (187), Expect = 2e-14
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
DL N+I L+ + L + ++ LSYNK + R++ A + SL+ + L + +
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470
Query: 281 E--GAFADLHAITHLAIGGNPL 300
F L +T L + N +
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNI 492
Score = 75.0 bits (185), Expect = 3e-14
Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 52/200 (26%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
L L N+I KI+S F L +L LDL N E
Sbjct: 384 HILNLTKNKISKIES-DAFSWLGHLEVLDLG--------LNEIGQELTGQEWRG--LE-- 430
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR-------DLSNNQIGF 230
+ ++ L ++ ++ L +
Sbjct: 431 ---NIFEIY-------------LSYNKYL------QLTRNSFALVPSLQRLMLRRVALKN 468
Query: 231 LSN--FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA----- 283
+ + F PL L+ L LS N + I+ D L GL+ L I+ L N+++ + + A
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528
Query: 284 ---FADLHAITHLAIGGNPL 300
L + L + N
Sbjct: 529 IYFLKGLSHLHILNLESNGF 548
Score = 75.0 bits (185), Expect = 3e-14
Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 48/196 (24%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
L L+ N + K G +L NL +L L N++ ++ + +
Sbjct: 124 ITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANS----------- 171
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN--------NQIG 229
+++ L EL S++I+ + + Q+G
Sbjct: 172 ---SLKKL-------------ELSSNQIK-------EFSPGCFHAIGRLFGLFLNNVQLG 208
Query: 230 FL---SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK--SLRIISLHGNDISMIPEGAF 284
+ + L LS ++L GLK +L ++ L N+++++ +F
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Query: 285 ADLHAITHLAIGGNPL 300
A L + + + N +
Sbjct: 269 AWLPQLEYFFLEYNNI 284
Score = 60.8 bits (148), Expect = 8e-10
Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 46/185 (24%)
Query: 118 TELILNDNEIGKIKSDGLFG-RLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
L L+++++ + G + NL LDL N + + +++F P
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-----------LP- 272
Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS-NFT 235
+ F L + I+ + S L N + L +FT
Sbjct: 273 ----QLEYFF-------------LEYNNIQHLF-------SHSLHGLFNVRYLNLKRSFT 308
Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
+S L ID + LK L +++ NDI I F L + +L++
Sbjct: 309 KQSIS--------LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360
Query: 296 GGNPL 300
+
Sbjct: 361 SNSFT 365
Score = 47.7 bits (114), Expect = 9e-06
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
TEL L N I KI + F + NLI LDL N ++ +
Sbjct: 100 TELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Score = 47.3 bits (113), Expect = 1e-05
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 100 DCSQRGLKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
+ G EIP ++ L+ + L N + + +F +L L+L++N +T +E
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQKNLITSVE 600
Query: 157 DNAFEGENDQGC---LGDNYCPPKCTC 180
F + N P CTC
Sbjct: 601 KKVFGPAFRNLTELDMRFN--PFDCTC 625
Score = 45.8 bits (109), Expect = 4e-05
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
S+ KL + D + L +L N + +P F +T L +G N
Sbjct: 6 HEVADCSHLKLTQVPDDLPTNITVL---NLTHNQLRRLPAANFTRYSQLTSLDVGFN 59
Score = 29.2 bits (66), Expect = 4.9
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 265 SLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
S + ++ +P+ ++ T L + N L
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNI---TVLNLTHNQL 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 126 bits (318), Expect = 4e-32
Identities = 46/334 (13%), Positives = 87/334 (26%), Gaps = 103/334 (30%)
Query: 86 AACPSGCSCD-GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD----------- 133
++ + SCD S L IP + L L++N I I +
Sbjct: 22 SSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQAL 81
Query: 134 ------------GLFGRLPNLIKLDLRRNQVTGIEDNAFEG----------ENDQGCLGD 171
F L +L LDL N ++ + + F+ N LG+
Sbjct: 82 VLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141
Query: 172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
T +++L I + F+ ++ + +
Sbjct: 142 TSLFSHLT-KLQILRVGNMDTFTKIQRKDFAG-----------LTFLEELEIDASDLQSY 189
Query: 232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP----------- 280
+ + +S LIL + + + S+ + L D+
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249
Query: 281 --------------------EGAFADLHAITHL------------------------AIG 296
+ + L +
Sbjct: 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309
Query: 297 GNPLYCDC-GLAWLSEWVKR-DYVEPGIARCTEP 328
NP C C + +LS W+ + E G A+C+
Sbjct: 310 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 118 bits (299), Expect = 4e-31
Identities = 42/127 (33%), Positives = 69/127 (54%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L NQ+ + F S + +L L NK++ I GL L+ ++L+ N IS +
Sbjct: 60 ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
G+F L+++T L + NP C+C LAW +EW+++ + G ARC P+ +RD + P
Sbjct: 120 GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPH 179
Query: 342 SSFQCKE 348
S F+C
Sbjct: 180 SEFKCSS 186
Score = 102 bits (256), Expect = 3e-25
Identities = 56/75 (74%), Positives = 69/75 (92%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CP+ C C+GT VDC+ RGLKEIP+DIPL+TTEL+LNDNE+G+I SDGLFGRLP+L+KL+L
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 148 RRNQVTGIEDNAFEG 162
+RNQ+TGIE NAFEG
Sbjct: 62 KRNQLTGIEPNAFEG 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 125 bits (317), Expect = 8e-31
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 41/216 (18%)
Query: 118 TELILNDNEIGKI-KSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
L+L+ N + + K+ + L NL LD+ RN + D+ E
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK------------ 411
Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF 236
+R L I + + P + D+SNN + S F
Sbjct: 412 -----MRFL----NLSSTGIR-VVKT----------CIPQTLEVLDVSNNNLDSFSLF-- 449
Query: 237 SPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296
L +L +L +S NKL+ + +L L ++ + N + +P+G F L ++ + +
Sbjct: 450 --LPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505
Query: 297 GNPLYCDCG-LAWLSEWVKRD-YVEPGIARCTEPAS 330
NP C C + +LS W+ ++ E G A+C+
Sbjct: 506 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK 541
Score = 106 bits (267), Expect = 2e-24
Identities = 33/240 (13%), Positives = 65/240 (27%), Gaps = 50/240 (20%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKS-------------- 132
+C + CD R IP + L L+ N+I I
Sbjct: 3 SCDASGVCD-----GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57
Query: 133 ---------DGLFGRLPNLIKLDLRRNQVTGIEDNAFEG----------ENDQGCLGDNY 173
F L +L LDL N ++ + + F N LG
Sbjct: 58 KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
P T ++ L I F+ ++ ++ + +
Sbjct: 118 LFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNE-----------LEIKALSLRNYQS 165
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
+ + + L L ++ + L S+R + L +++ + +
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Score = 90.6 bits (225), Expect = 2e-19
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
+ DLS N+I ++ + + L LIL +++ I+ DA L SL + L N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
+S + F L ++ +L + GNP
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPY 110
Score = 87.5 bits (217), Expect = 2e-18
Identities = 21/198 (10%), Positives = 59/198 (29%), Gaps = 14/198 (7%)
Query: 106 LKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L+ + L L+ +E + + L ++ L+LR + + +
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPV 218
Query: 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRD 222
+ + + D E + V + D
Sbjct: 219 DEVSSPMKKLAFRG-------SVLTDESFNELLKLLRYILELSEVEFDDCTL---NGLGD 268
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
+ ++ +S + +L + L + L+ ++ I++ + + ++P
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328
Query: 283 AFADLHAITHLAIGGNPL 300
L ++ L + N +
Sbjct: 329 FSQHLKSLEFLDLSENLM 346
Score = 80.2 bits (198), Expect = 6e-16
Identities = 26/195 (13%), Positives = 57/195 (29%), Gaps = 46/195 (23%)
Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC------ 168
+ L + + ++ L + ++ + ++V + + Q
Sbjct: 286 VTIRRLHIPQFYLFYD-LSTVYSLLEKVKRITVENSKVFLVPCSFS-----QHLKSLEFL 339
Query: 169 -LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
L +N + ++ S G +P S LS N
Sbjct: 340 DLSEN--------------------------LMVEEYLKNSACKGAWP-SLQTLVLSQNH 372
Query: 228 IGFLSN--FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285
+ + L L+ L +S N + D+ + +R ++L I ++
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431
Query: 286 DLHAITHLAIGGNPL 300
L L + N L
Sbjct: 432 TL---EVLDVSNNNL 443
Score = 77.8 bits (192), Expect = 3e-15
Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 222 DLS-NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
+ + F+ L+ L++L + L+ +L ++ + ++LH ++ + +
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188
Query: 281 EGAFADLHAITHLAIGGNPL 300
E L ++ +L + L
Sbjct: 189 EIFADILSSVRYLELRDTNL 208
Score = 77.1 bits (190), Expect = 6e-15
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L +++I + F L L L LS N L + L SL+ ++L GN +
Sbjct: 56 ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115
Query: 282 -GAFADLHAITHLAIGGNPL 300
F +L + L IG
Sbjct: 116 TSLFPNLTNLQTLRIGNVET 135
Score = 74.4 bits (183), Expect = 4e-14
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 222 DLSNNQIGFLSNF-TFSPLSKLSQLILS-YNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
+L N L F L+ L L + I R AGL SL + + +
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163
Query: 280 PEGAFADLHAITHLAIGGNPLYC 302
+ + I HL + +
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAF 186
Score = 62.4 bits (152), Expect = 2e-10
Identities = 20/213 (9%), Positives = 64/213 (30%), Gaps = 18/213 (8%)
Query: 106 LKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
+ + L + + E F L +L +L+++ + + + +
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169
Query: 162 G----------ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY--IAVELFSSRIRVSY 209
++ L + + + L A + + V+ SS ++
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229
Query: 210 YVGNYPVSTMYRDLSN--NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
+ G+ + +L I LS F + + ++ + ++R
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ + + ++ L + + + + +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322
Score = 55.5 bits (134), Expect = 3e-08
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L ++ FL LS + L L L L + + S++ +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 282 GAFADLHAITHLAIGGNPLYC-DCGLAWLSEW 312
+F +L + + + + DC L L ++
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269
Score = 49.3 bits (118), Expect = 3e-06
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 97 TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
+D S L +P L EL ++ N++ + L P L+ + + RNQ+ +
Sbjct: 434 EVLDVSNNNLDSFSLFLPRL--QELYISRNKLKTLPDASL---FPVLLVMKISRNQLKSV 488
Query: 156 EDNAFEGENDQGC-------LGDNYCPPKCTCT 181
D F L N P C+C
Sbjct: 489 PDGIF-----DRLTSLQKIWLHTN--PWDCSCP 514
Score = 47.8 bits (114), Expect = 7e-06
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
++ S G++ + IP L +++N + LP L +L + RN++ +
Sbjct: 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF-----LPRLQELYISRNKLKTLP 467
Query: 157 DNAF 160
D +
Sbjct: 468 DASL 471
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 124 bits (312), Expect = 1e-30
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+LS N +G + + F L KL L LSYN ++ + + GL +L+ ++L N + +P+
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 282 GAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCTEPASMRDKLLLTA 339
G F L ++ + + NP C C + +LS W+ K E G A+C+ ++
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICPT 448
Query: 340 PASS 343
AS
Sbjct: 449 SASL 452
Score = 110 bits (278), Expect = 3e-26
Identities = 41/226 (18%), Positives = 69/226 (30%), Gaps = 56/226 (24%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
S CS G C RGL ++P ++P + +DL
Sbjct: 4 GTSECSVIGYNAICINRGLHQVP-ELPAHVN-------------------------YVDL 37
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
N + + + +F D ++ L + + I F +
Sbjct: 38 SLNSIAELNETSFSRLQD----------------LQFLKVEQQTPGLVIRNNTFRGLSSL 81
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ--CIDRDALAGLKS 265
L NQ L F+ L+ L L L+ L + + L S
Sbjct: 82 IIL-----------KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130
Query: 266 LRIISLHGNDISMI-PEGAFADLHAITHLAIGGNPLYCDCGLAWLS 310
L ++ L N+I I P F ++ L + N + C L+
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176
Score = 92.9 bits (231), Expect = 3e-20
Identities = 37/204 (18%), Positives = 61/204 (29%), Gaps = 21/204 (10%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG-------ENDQGCLG 170
L+L DN I KI+ F + LDL N+V I + +
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191
Query: 171 DNYCPPKCTCTVRVLFYDGRAGECY----------IAVELFSSRIRVS--YYVGNYPVST 218
+ + F I + +
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
Query: 219 MYRDLSNNQIGFLSNFTFSPL--SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI 276
M + NFTF L S + LS +K+ + + + L ++L N+I
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
+ I + AF L + L + N L
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFL 335
Score = 65.2 bits (159), Expect = 3e-11
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 222 DLSNNQI--GFLSNFTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRIISLHGNDISM 278
L+ + LS F PL+ L L+L N ++ I ++ ++ L N +
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168
Query: 279 IPEGAFADLHAI--THLAIGGNPLYC 302
I E + T L + L
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQD 194
Score = 63.6 bits (155), Expect = 6e-11
Identities = 33/210 (15%), Positives = 58/210 (27%), Gaps = 31/210 (14%)
Query: 118 TELILNDNEIGKIK-SDGLFGRLPNLIKLDLRRNQVTGIE-DNAFEGENDQGC--LGDNY 173
L L + S F L +L L LR N + I+ + F L N
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN- 164
Query: 174 CPPKCTCTVRVLFYDGRAGE------CYIAVELFSSRIRVSYYVGNY--PVSTMYRDLSN 225
K C + + I ++ + GN S DLS
Sbjct: 165 -KVKSIC--EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 226 NQIGFLSNFTFSPLSKLSQLI-------------LSYNKLQCIDRDALAGLK--SLRIIS 270
N F +++ + + D GL+ ++
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281
Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L + I + + F+ + L + N +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Score = 63.2 bits (154), Expect = 1e-10
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 88 CPSGCSCDG------TRVDCSQRGLKEIPKDIPLY---TTELILNDNEIGKIKSDGLFGR 138
P + G D S+ + + K + + +L L NEI KI D F
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWG 321
Query: 139 LPNLIKLDLRRNQVTGIEDNAFEG 162
L +L+KL+L +N + I+ FE
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFEN 345
Score = 59.0 bits (143), Expect = 2e-09
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 222 DLSNNQIGFLSNFT-FSPLSKLSQLILSYNKLQCIDRDALAGLKSLR----------IIS 270
L +N I + + F + + L L++NK++ I + L + +
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194
Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC 304
++ + G +IT L + GN
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228
Score = 45.9 bits (109), Expect = 3e-05
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L L+ N I + D F LPNL +L L NQ+ + D F+
Sbjct: 350 EVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Score = 29.7 bits (67), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN 150
EL L+ N++ + DG+F RL +L K+ L N
Sbjct: 374 KELALDTNQLKSV-PDGIFDRLTSLQKIWLHTN 405
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 118 bits (297), Expect = 9e-30
Identities = 41/251 (16%), Positives = 76/251 (30%), Gaps = 55/251 (21%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
C V+C +R L +P D+P TT L
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTT-------------------------ILH 37
Query: 147 LRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIR 206
L N + L + T + ++L ++++
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAE----LTKLQVDGTLPVLG---TLDLSHNQLQ 90
Query: 207 VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL 266
+G + D+S N++ L L +L +L L N+L+ + L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 267 RIISLHGNDISMIPEGAFA-----------------------DLHAITHLAIGGNPLYCD 303
+SL N+++ +P G H + + GNP C+
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 304 CGLAWLSEWVK 314
C + + W++
Sbjct: 211 CEILYFRRWLQ 221
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 113 bits (284), Expect = 1e-29
Identities = 26/131 (19%), Positives = 38/131 (29%), Gaps = 8/131 (6%)
Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYEC 459
C C ++ E + ++ D C + C N C D I +YEC
Sbjct: 18 CIEEKCSFEEAREVFEN------TEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYEC 71
Query: 460 RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN 519
C GF+G+ C+ N S C CT G+ + V
Sbjct: 72 WCQVGFEGKNCELDATCNIK--NGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVP 129
Query: 520 HMCQNGGTCVD 530
C
Sbjct: 130 FPCGRVSVSHS 140
Score = 102 bits (257), Expect = 6e-26
Identities = 24/137 (17%), Positives = 37/137 (27%), Gaps = 9/137 (6%)
Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFN 420
C + C+ + E D C NPC N G CK +
Sbjct: 18 CIEEKCSFEEARE------VFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDI-NSYE 70
Query: 421 CECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE 480
C C G+ G CE++ + + C C G++ Q
Sbjct: 71 CWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVP- 129
Query: 481 YNPCRNGARCLDHFSHY 497
PC + +
Sbjct: 130 -FPCGRVSVSHSPTTLT 145
Score = 89.7 bits (223), Expect = 2e-21
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
+ C +PC N G+C+ Y+C C G+ G++CE N CK +
Sbjct: 48 GDQCEPNPCLNGGLCKDDI-NSYECWCQVGFEGKNCELDATCNIKNGRCK-QFCKTGADS 105
Query: 418 RFNCECAPGYTGDRCEINIDDCLSHKCENNATCVD 452
+ C C GY + + + C +
Sbjct: 106 KVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHS 140
Score = 88.6 bits (220), Expect = 5e-21
Identities = 22/131 (16%), Positives = 35/131 (26%), Gaps = 17/131 (12%)
Query: 450 CVDLIQAYECRC------APGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTP 503
C++ ++E + C NPC NG C D + Y C C
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEP--NPCLNGGLCKDDINSYECWCQV 75
Query: 504 GFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSP 563
GF G NC ++ + + + C C + + P
Sbjct: 76 GFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK---------SCKP 126
Query: 564 CQHHDCKNGIC 574
C
Sbjct: 127 AVPFPCGRVSV 137
Score = 72.4 bits (178), Expect = 3e-15
Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 499 CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
V+ D C + C NGG C D IN Y C C+ F GK CE+
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD------- 85
Query: 559 PQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
+ + C + LC C GY
Sbjct: 86 --ATCNIKNGRCKQFCKTGAD-SKVLCSCTTGYRLAP 119
Score = 52.0 bits (125), Expect = 3e-08
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
NGG C D IN Y C C+ F GK CE+ + + C +
Sbjct: 58 NGGLCKDDINSYECWCQVGFEGKNCELD---------ATCNIKNGRCKQFCKTGAD-SKV 107
Query: 61 LCKCAPGYSGVE 72
LC C GY
Sbjct: 108 LCSCTTGYRLAP 119
Score = 32.3 bits (74), Expect = 0.18
Identities = 4/51 (7%), Positives = 7/51 (13%), Gaps = 9/51 (17%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGIC 51
+ C C + + P C
Sbjct: 96 KQFCKTGADSKVLCSCTTGYRLAPDQK---------SCKPAVPFPCGRVSV 137
Score = 28.5 bits (64), Expect = 4.1
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 18/75 (24%)
Query: 3 GTCVDGINDYTCKCEGD------FVGKFCEIAPFVAMMYPQTSPCQHH-DCKNGICFQPQ 55
C++ + E V + +PC + CK+ I
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQY----VDGDQCEPNPCLNGGLCKDDI----- 66
Query: 56 GSNDYLCKCAPGYSG 70
N Y C C G+ G
Sbjct: 67 --NSYECWCQVGFEG 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 121 bits (305), Expect = 7e-29
Identities = 46/262 (17%), Positives = 75/262 (28%), Gaps = 60/262 (22%)
Query: 93 SCDGTRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLR 148
+ + S+ L+ + L LILN N D P+L +L L
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459
Query: 149 RNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVS 208
N + + + + ++VL
Sbjct: 460 ENMLQLAWETELCWDV-----------FEGLSHLQVL----------------------- 485
Query: 209 YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI 268
L++N + L FS L+ L L L+ N+L + + L +L I
Sbjct: 486 -------------YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEI 530
Query: 269 ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVE----PGIAR 324
+ + N + F L L I N C+C L+ W+ V P
Sbjct: 531 LDISRNQLLAPNPDVFVSLS---VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIY 587
Query: 325 CTEPASMRDKLLLTAPASSFQC 346
C P S L +
Sbjct: 588 CVYPDSFSGVSLFSLSTEGCDE 609
Score = 104 bits (262), Expect = 1e-23
Identities = 47/249 (18%), Positives = 79/249 (31%), Gaps = 68/249 (27%)
Query: 92 CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD------------------ 133
CS DG L ++P+ + T L+L+ N I + +
Sbjct: 2 CSFDGRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 134 ------GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFY 187
F LPNL LDL +++ + +AF+G + L
Sbjct: 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG----------------LFHLFELR- 103
Query: 188 DGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR----DLSNNQIGFLS-NFTFSPLSKL 242
L+ + + + + DLS NQI L + +F L+ L
Sbjct: 104 ------------LYFCGLS-DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150
Query: 243 SQLILSYNKLQCIDRDALAGL--KSLRIISLHGNDISMIPEGAFADLH------AITHLA 294
+ S N++ + L L K+L SL N + + + L
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 295 IGGNPLYCD 303
+ GN D
Sbjct: 211 VSGNGWTVD 219
Score = 101 bits (252), Expect = 2e-22
Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 20/202 (9%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG------------END 165
T L L+ N+I + FG+L +L +D NQ+ + ++ E N
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Query: 166 QGCLGDNYCPPKCTCTVRVL----FYDGRAGECYIAVELFSSRIRVS-YYVGNYPVSTMY 220
+ KC R + G FS+ I S + M
Sbjct: 186 LYSR-VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 221 RDLSNNQIGFLSNFTFSPLSKLS--QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISM 278
+ I TF+ L++ S L LS+ + ++ LK L++++L N I+
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304
Query: 279 IPEGAFADLHAITHLAIGGNPL 300
I + AF L + L + N L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLL 326
Score = 97.2 bits (242), Expect = 3e-21
Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 25/214 (11%)
Query: 118 TELILNDNEIGKIKSDGLFG-----RLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172
+ L N + S R L LD+ N T F
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF----SNAISKSQ 232
Query: 173 YCPPKCTCTVRVLFYDGRAGECYIAVELFSS-------RIRVSY----YVGNYPVSTMYR 221
+ + + F+ + +S+ + + T+
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291
Query: 222 ----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
+L+ N+I +++ F L L L LSYN L + GL + I L N I+
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 278 MIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSE 311
+I + F L + L + N L + + +
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Score = 92.9 bits (231), Expect = 7e-20
Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 17/201 (8%)
Query: 118 TELILNDNEIGKIKSDGLFG-RLPNLIKLDLRRNQVTGIEDNAFEGENDQGC-------- 168
+ + N+I + L + L L N + + +
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 169 LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFS--------SRIRVSYYVGNYPVSTMY 220
+ N T +A +A + + + G S +
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
DLS+ + L++ F L L L L+YNK+ I +A GL +L++++L N + +
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 281 EGAFADLHAITHLAIGGNPLY 301
F L + ++ + N +
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIA 351
Score = 77.5 bits (191), Expect = 5e-15
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 222 DLSNNQI--GFLSNFTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRIISLHGNDISM 278
L + L + F L L++L LS N+++ + + L SL+ I N I +
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162
Query: 279 IPEGAFADLHAIT--HLAIGGNPLYCDCGLAWLS 310
+ E L T ++ N LY + W
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196
Score = 76.8 bits (189), Expect = 9e-15
Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 33/196 (16%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD------ 171
L L+ N +G++ F LP + +DL++N + I+D F+ L
Sbjct: 317 QVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF------LEKLQTLDL 369
Query: 172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
+ + + L +++ + ++ LS N++ L
Sbjct: 370 RDNALTTIHFIPSIPD----------IFLSGNKLV---TLPKINLTANLIHLSENRLENL 416
Query: 232 SNFTF-SPLSKLSQLILSYNKLQCIDRDAL-AGLKSLRIISLHGNDI-----SMIPEGAF 284
F + L LIL+ N+ D + SL + L N + + + F
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476
Query: 285 ADLHAITHLAIGGNPL 300
L + L + N L
Sbjct: 477 EGLSHLQVLYLNHNYL 492
Score = 73.3 bits (180), Expect = 1e-13
Identities = 33/203 (16%), Positives = 65/203 (32%), Gaps = 20/203 (9%)
Query: 118 TELILNDNEIGKIK-SDGLFGRLPNLIKLDLRRNQVTGIEDN-AFEG----------END 165
EL L + DG F L L +LDL +NQ+ + + +F N
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159
Query: 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSY------YVGNYPVSTM 219
+ ++ P T+ + ++V+ V +
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK--SLRIISLHGNDIS 277
+N I F+ + ++ ++ D++ AGL S+R + L +
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279
Query: 278 MIPEGAFADLHAITHLAIGGNPL 300
+ F L + L + N +
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKI 302
Score = 71.8 bits (176), Expect = 4e-13
Identities = 39/195 (20%), Positives = 75/195 (38%), Gaps = 36/195 (18%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG----------ENDQG 167
L L N+I KI +D F L NL L+L N + + + F G +N
Sbjct: 293 KVLNLAYNKINKI-ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 168 CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
+ + + L ++L + + +++ + P LS N+
Sbjct: 352 II-----QDQTFKFLEKLQT----------LDLRDNALTTIHFIPSIP----DIFLSGNK 392
Query: 228 IGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA-LAGLKSLRIISLHGNDISMIP-EGAFA 285
+ L + + + LS N+L+ +D L + L+I+ L+ N S + +
Sbjct: 393 LVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448
Query: 286 DLHAITHLAIGGNPL 300
+ ++ L +G N L
Sbjct: 449 ENPSLEQLFLGENML 463
Score = 50.6 bits (121), Expect = 1e-06
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 97 TRVDCSQRGLKEIPKDI-----PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
+K+ ++ L L+ + + + +F L +L L+L N+
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNK 301
Query: 152 VTGIEDNAFEG 162
+ I D AF G
Sbjct: 302 INKIADEAFYG 312
Score = 39.8 bits (93), Expect = 0.003
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 88 CPSGCSCDG----TRVDCSQRGLKEIPK-DIPLYT-------TELILNDNEIGKIKSDGL 135
C + ++ + L+ + ++ L LN N + + G+
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGV 499
Query: 136 FGRLPNLIKLDLRRNQVTGIEDNAFEG 162
F L L L L N++T + N
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDLPA 526
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 120 bits (302), Expect = 8e-29
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
++ N F+ L L+ L LS +L+ + A L SL+++++ N + +P
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Query: 281 EGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR-DYVEPGIARCTEP 328
+G F L ++ + + NP C C + +LS W+ + E G A+C+
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 560
Score = 89.4 bits (222), Expect = 6e-19
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
P ST DLS N + L +++F +L L LS ++Q I+ A L L + L GN
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
I + GAF+ L ++ L L
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNL 112
Score = 85.5 bits (212), Expect = 1e-17
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS +I + + + LS LS LIL+ N +Q + A +GL SL+ + +++ +
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 282 GAFADLHAITHLAIGGNPL 300
L + L + N +
Sbjct: 118 FPIGHLKTLKELNVAHNLI 136
Score = 83.6 bits (207), Expect = 4e-17
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 89 PSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLR 148
P C + +IP ++P T L L+ N + + S F P L LDL
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLS 60
Query: 149 RNQVTGIEDNAFEG 162
R ++ IED A++
Sbjct: 61 RCEIQTIEDGAYQS 74
Score = 81.7 bits (202), Expect = 2e-16
Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 17/202 (8%)
Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174
L E L + LF L N+ L + ++D ++ L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 175 ---PPKCTCTVRVL-FYDGRAGECYIAVELFS-----------SRIRVSYYVGNYPVSTM 219
P +++ L F + G + V+L S S S
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI-DRDALAGLKSLRIISLHGNDISM 278
Y DLS N + +S+ F L +L L ++ L+ + + L++L + + +
Sbjct: 377 YLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 279 IPEGAFADLHAITHLAIGGNPL 300
G F L ++ L + GN
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSF 457
Score = 79.0 bits (195), Expect = 1e-15
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L+ N I L+ FS LS L +L+ L ++ + LK+L+ +++ N I
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 282 G-AFADLHAITHLAIGGNPL 300
F++L + HL + N +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKI 161
Score = 70.1 bits (172), Expect = 8e-13
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 222 DLSNNQIGFLS-NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI----ISLHGNDI 276
++++N I FS L+ L L LS NK+Q I L L + + + L N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
+ I GAF ++ + L + N
Sbjct: 190 NFIQPGAFKEIR-LHKLTLRNNFD 212
Score = 68.6 bits (168), Expect = 2e-12
Identities = 37/214 (17%), Positives = 62/214 (28%), Gaps = 24/214 (11%)
Query: 100 DCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRR------NQ 151
D S + I + +L L +N L L L
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 152 VTGIEDNAFEG--ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI-RVS 208
+ + +A EG Y + LF + L S I RV
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSF---SLVSVTIERVK 298
Query: 209 YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI 268
+ N+ + +L N + F L L +L + NK + L SL
Sbjct: 299 DFSYNF--GWQHLELVNCKF---GQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEF 351
Query: 269 ISLHGNDISMI--PEGAFADLHAITHLAIGGNPL 300
+ L N +S + ++ +L + N +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Score = 67.8 bits (166), Expect = 4e-12
Identities = 32/205 (15%), Positives = 50/205 (24%), Gaps = 25/205 (12%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG------ENDQGCLGD 171
EL + N I K F L NL LDL N++ I N L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 172 N---YCPPKC--TCTVRVLFYDGRAGECYIAVELFS--SRIRVSYYVGNYPVSTMYRDLS 224
N + P + L + + + V V +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG-------EFRN 239
Query: 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR---DALAGLKSLRIISLHGNDISMIPE 281
+ L L+ L D L ++ SL I + +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 282 GAFADLHAITHLAIGGNPLYCDCGL 306
++ HL + L
Sbjct: 300 FSY--NFGWQHLELVNCKFGQFPTL 322
Score = 67.4 bits (165), Expect = 6e-12
Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 34/193 (17%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED-NAFEGENDQGCLGDNYCPP 176
+L+ + + + + G L L +L++ N + + F + L +
Sbjct: 103 QKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF 236
+ I + P+ + DLS N + F+ F
Sbjct: 162 QS-----------------IYCTDLR-------VLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 237 SPLSKLSQLILSYNKLQC-IDRDALAGLKSLRIISL------HGNDISMIPEGAFADLHA 289
+ L +L L N + + + GL L + L + ++ + A L
Sbjct: 198 KEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 290 ITHLAIGGNPLYC 302
+T L
Sbjct: 257 LTIEEFRLAYLDY 269
Score = 54.0 bits (130), Expect = 1e-07
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
+D S G+ + + L + + ++ +F L NLI LD+
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 155 IEDNAFEG 162
+ F G
Sbjct: 436 AFNGIFNG 443
Score = 47.4 bits (113), Expect = 1e-05
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
T L L+ ++ ++ S F L +L L++ NQ+ + D F+
Sbjct: 473 TFLDLSQCQLEQL-SPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Score = 45.1 bits (107), Expect = 5e-05
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L + N + +F L NL LDL + Q+ + AF
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Score = 38.2 bits (89), Expect = 0.007
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG-IEDNAFEG 162
L ++ +G+F L +L L + N + F
Sbjct: 424 IYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 116 bits (291), Expect = 1e-28
Identities = 43/360 (11%), Positives = 79/360 (21%), Gaps = 96/360 (26%)
Query: 87 ACPSG-CSCDGTRVDCSQRGLKEIPKDIPLYTT------------------------ELI 121
C C C C + + EIP D+P ++
Sbjct: 1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIE 60
Query: 122 LNDNEIG-----------------------KIKS--DGLFGRLPNLIKLDLRRNQVTGIE 156
++ N++ + F LPNL L + + +
Sbjct: 61 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120
Query: 157 DNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPV 216
D +L I F
Sbjct: 121 DVHKIHSL----------------QKVLLDIQDNINIHTIERNSFV----------GLSF 154
Query: 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI 276
++ L+ N I + N F+ + N L+ + D G I+ + I
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214
Query: 277 SMIPEGAFADLHAITHLAIG-------------------GNPLYCDCGLAWLSEWVKRDY 317
+P +L + + P +C W + +
Sbjct: 215 HSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHP 274
Query: 318 VEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGV-CEPLP 376
+ E M + + ++ Y V C P P
Sbjct: 275 ICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSPKP 334
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 109 bits (275), Expect = 2e-28
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 415 EEGRFNCECAP-GYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTK 473
EE R + A + D C S C+N +C D +Q+Y C C P F+G C+T
Sbjct: 25 EEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 84
Query: 474 TPFCAGEYNPCRNG---ARCLDHF-SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTC 528
NG C DH + +C C G+S + V+ V + C
Sbjct: 85 KDDQLI--CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141
Score = 88.5 bits (220), Expect = 6e-21
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGT---CKLL 414
+ C SPC N G C+ + Y C C P + G++CE D N G C
Sbjct: 47 GDQCASSPCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH 105
Query: 415 EEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATC 450
+ +C C GY+ ++ + + C
Sbjct: 106 TGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141
Score = 82.8 bits (205), Expect = 5e-19
Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 21/135 (15%)
Query: 450 CVDLIQAYECRC------APGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTP 503
C + ++E + CA +PC+NG C D Y C C P
Sbjct: 17 CKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCAS--SPCQNGGSCKDQLQSYICFCLP 74
Query: 504 GFSGVNCTVNVDDCVNHMCQNGGT---CVDGI-NDYTCKCEGDFVGKFCEIAPFVAMMYP 559
F G NC + DD + + +NGG C D +C+C + +
Sbjct: 75 AFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV--------- 125
Query: 560 QTSPCQHHDCKNGIC 574
+P + C
Sbjct: 126 SCTPTVEYPCGKIPI 140
Score = 77.4 bits (191), Expect = 4e-17
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 14/117 (11%)
Query: 483 PCRNGARCLDHFSHYTCECTP-GFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
C+ +C + + + D C + CQNGG+C D + Y C C
Sbjct: 16 ECKEE-QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLP 74
Query: 542 DFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQ---PQGSNDYLCKCAPGYSGKE 595
F G+ CE +NG C Q C+C GYS
Sbjct: 75 AFEGRNCETH---------KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA 122
Score = 54.3 bits (131), Expect = 4e-09
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQ---PQGS 57
NGG+C D + Y C C F G+ CE +NG C Q
Sbjct: 57 NGGSCKDQLQSYICFCLPAFEGRNCETH---------KDDQLICVNENGGCEQYCSDHTG 107
Query: 58 NDYLCKCAPGYSG 70
C+C GYS
Sbjct: 108 TKRSCRCHEGYSL 120
Score = 28.4 bits (64), Expect = 3.1
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 18/76 (23%)
Query: 526 GTCVDGINDYTCKCE------GDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQ 578
C + + E + C C+N G C
Sbjct: 15 RECKEEQCSFEEAREIFKDAERTKLFWISYS---------DGDQCASSPCQNGGSCK--D 63
Query: 579 GSNDYLCKCAPGYSGK 594
Y+C C P + G+
Sbjct: 64 QLQSYICFCLPAFEGR 79
Score = 28.1 bits (63), Expect = 4.3
Identities = 12/76 (15%), Positives = 18/76 (23%), Gaps = 18/76 (23%)
Query: 3 GTCVDGINDYTCKCE------GDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQ 55
C + + E + C C+N G C
Sbjct: 15 RECKEEQCSFEEAREIFKDAERTKLFWISYS---------DGDQCASSPCQNGGSCKD-- 63
Query: 56 GSNDYLCKCAPGYSGV 71
Y+C C P + G
Sbjct: 64 QLQSYICFCLPAFEGR 79
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 112 bits (283), Expect = 2e-26
Identities = 39/224 (17%), Positives = 66/224 (29%), Gaps = 56/224 (25%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
L ++ +G+F L +L L + N+F+ +
Sbjct: 424 IYLDISHTHTRVA-FNGIFNGLSSLEVLKMA--------GNSFQENFLPDIFTE------ 468
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
+ L DLS Q+ LS F+
Sbjct: 469 -LRNLTFL------------------------------------DLSQCQLEQLSPTAFN 491
Query: 238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADL-HAITHLAIG 296
LS L L +S+N +D L SL+++ N I + ++ L +
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551
Query: 297 GNPLYCDCGLAWLSEWVKR---DYVEPGIARCTEPASMRDKLLL 337
N C C +W+K VE C P+ + +L
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595
Score = 85.5 bits (212), Expect = 1e-17
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
P ST DLS N + L +++F +L L LS ++Q I+ A L L + L GN
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
I + GAF+ L ++ L L
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNL 112
Score = 84.7 bits (210), Expect = 2e-17
Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 33/198 (16%)
Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174
L E L + LF L N+ L + ++D ++ L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 175 ---PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM------YRDLSN 225
P +++ L + G S + + DLS
Sbjct: 317 GQFPTLKLKSLKRL--------------------TFTSNKGGNAFSEVDLPSLEFLDLSR 356
Query: 226 NQIGFLS--NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MIPEG 282
N + F + + + L L LS+N + + + GL+ L + +++ M
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 283 AFADLHAITHLAIGGNPL 300
F L + +L I
Sbjct: 416 VFLSLRNLIYLDISHTHT 433
Score = 82.4 bits (204), Expect = 1e-16
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS +I + + + LS LS LIL+ N +Q + A +GL SL+ + +++ +
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 282 GAFADLHAITHLAIGGNPL 300
L + L + N +
Sbjct: 118 FPIGHLKTLKELNVAHNLI 136
Score = 78.9 bits (195), Expect = 2e-15
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 89 PSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLR 148
P C + +IP ++P T L L+ N + + S F P L LDL
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLS 60
Query: 149 RNQVTGIEDNAFEG 162
R ++ IED A++
Sbjct: 61 RCEIQTIEDGAYQS 74
Score = 77.4 bits (191), Expect = 5e-15
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L+ N I L+ FS LS L +L+ L ++ + LK+L+ +++ N I
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 282 G-AFADLHAITHLAIGGNPL 300
F++L + HL + N +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKI 161
Score = 75.5 bits (186), Expect = 2e-14
Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 26/191 (13%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG--ENDQGCLGDNYCP 175
+ L I ++K F L+L + +
Sbjct: 285 SSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341
Query: 176 PKCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYV----GNYPVSTMYRDLSNNQIGF 230
+ + L +L + + S Y DLS N +
Sbjct: 342 SEVDLPSLEFL-------------DLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVIT 387
Query: 231 LSNFTFSPLSKLSQLILSYNKLQ-CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHA 289
+S+ F L +L L ++ L+ + L++L + + + G F L +
Sbjct: 388 MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 290 ITHLAIGGNPL 300
+ L + GN
Sbjct: 447 LEVLKMAGNSF 457
Score = 71.2 bits (175), Expect = 4e-13
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 222 DLSNNQIGFLSNF-TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MI 279
D ++ + +S F F L L L +S+ + GL SL ++ + GN
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 280 PEGAFADLHAITHLAIGGNPL 300
F +L +T L + L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQL 482
Score = 65.4 bits (160), Expect = 3e-11
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI----ISLHGNDI 276
++++N I F FS L+ L L LS NK+Q I L L + + + L N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
+ I GAF ++ + L + N
Sbjct: 190 NFIQPGAFKEIR-LHKLTLRNNFD 212
Score = 62.7 bits (153), Expect = 2e-10
Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 30/212 (14%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNL----IKLDLRRNQVTGIEDNAFEGEN----DQGCL 169
L L+ N+I I L + + LDL N + I+ AF+ L
Sbjct: 152 EHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT---L 207
Query: 170 GDNYC----PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN 225
+N+ C + L + + F + + + + +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVH------RLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 226 NQIGFLSNF------TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
++ +L + F+ L+ +S L ++ + + + + L
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQF 319
Query: 280 PEGAFADLHAITHLAIGGNPLYCDCGLAWLSE 311
P L +T + G + + L L
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Score = 62.4 bits (152), Expect = 3e-10
Identities = 40/208 (19%), Positives = 64/208 (30%), Gaps = 43/208 (20%)
Query: 114 PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG-----------------IE 156
PL L L+ N + I G F + L KL LR N + +
Sbjct: 176 PLLNLSLDLSLNPMNFI-QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 157 DNAFEGENDQGCLGDNYCPPKCTCTVRVL---FYDGRAGECYIAVELFSSRIRVSYYVGN 213
F E + + C T+ + D + ++LF+ VS +
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI---IDLFNCLTNVSSF--- 287
Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
L + I + +F++ L L K L LK L S G
Sbjct: 288 --------SLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPLY 301
+ + DL ++ L + N L
Sbjct: 338 GNAF-----SEVDLPSLEFLDLSRNGLS 360
Score = 57.3 bits (139), Expect = 8e-09
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 21/197 (10%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG------ENDQGCLGD 171
EL + N I K F L NL LDL N++ I N L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 172 NY---CPPKC--TCTVRVLFYDGRAGECYIAVELFS--SRIRVSY-YVGNYPVSTMYRDL 223
N P + L + + + V +G +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 224 SNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA 283
+ + L N T L+ L + + D L ++ SL I + + +
Sbjct: 247 DKSALEGLCNLTIEEFR-LAYLDYYLDDII----DLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 284 FADLHAITHLAIGGNPL 300
+ HL +
Sbjct: 302 Y--NFGWQHLELVNCKF 316
Score = 40.0 bits (94), Expect = 0.002
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE-DNAFEG 162
+L+ + + + + G L L +L++ N + + F
Sbjct: 103 QKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Score = 36.2 bits (84), Expect = 0.036
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
++ + P L N+ G S LP+L LDL RN ++
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKG 363
Query: 157 DNAFEGEN 164
+
Sbjct: 364 CCSQSDFG 371
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 106 bits (267), Expect = 3e-26
Identities = 57/301 (18%), Positives = 96/301 (31%), Gaps = 97/301 (32%)
Query: 87 ACPS--GCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNL 142
C + GC+C+ VDC + L +P IP T +L L + + SD F L L
Sbjct: 3 TCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATL-SDATFRGLTKL 61
Query: 143 IKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFS 202
L+L NQ+ + F+
Sbjct: 62 TWLNLDYNQLQTLSAGVFDD---------------------------------------- 81
Query: 203 SRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAG 262
L+NNQ+ L F L++L +L L N+L+ +
Sbjct: 82 ------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 263 LKSLRIISLHGNDISMIPEGAF------------------------ADLHAITHLAIGGN 298
L L+ + L+ N + IP GAF L + + + GN
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 299 PLYCDC-GLAWLSEWVKR------------DYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
C + +LS+W++ + P C++ +R +T ++
Sbjct: 190 QFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVRT---VTNETLKYE 246
Query: 346 C 346
C
Sbjct: 247 C 247
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 106 bits (266), Expect = 4e-26
Identities = 33/246 (13%), Positives = 74/246 (30%), Gaps = 61/246 (24%)
Query: 86 AACPSGCSC-DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD----------- 133
C C + + ++ IP +P T L L + + I S
Sbjct: 2 GCSSPPCECHQEEDFRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRI 60
Query: 134 -------------GLFGRLPNLIKLDLRRNQ-VTGIEDNAFEGENDQGCLGDNYCPPKCT 179
F L + +++R + +T I+ +A + P
Sbjct: 61 YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE-----------LP---- 105
Query: 180 CTVRVLFYDGRAGECYIAVELFSSRIRV---SYYVGNYPVSTMYRDLSNNQIGFLSNFTF 236
++ L +F++ +++ V + + + N + + F
Sbjct: 106 -LLKFLG-------------IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 237 SPLSKLSQ-LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLH-AITHLA 294
L + L L N + A G K + +++I + AF ++ + L
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211
Query: 295 IGGNPL 300
+ +
Sbjct: 212 VSQTSV 217
Score = 62.3 bits (152), Expect = 4e-11
Identities = 29/175 (16%), Positives = 46/175 (26%), Gaps = 34/175 (19%)
Query: 104 RGLKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN-QVTGIEDNA 159
R L I D L L + + + L++ N +T I NA
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 160 FEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIR-VSYYVGNYPVST 218
F+G L L+++ V Y N
Sbjct: 151 FQG---------------LCNETLTLK-------------LYNNGFTSVQGYAFNGTKLD 182
Query: 219 MYRDLSNNQIGFLSNFTFSPL-SKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
N + + F + S S L +S + + L LK L +
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 105 bits (265), Expect = 1e-25
Identities = 52/274 (18%), Positives = 96/274 (35%), Gaps = 66/274 (24%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLY-----------------------TTELIL 122
P + + + ++ + + L L L
Sbjct: 11 QIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL 70
Query: 123 NDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTV 182
N K+ L NL L L NQ+ + + F+
Sbjct: 71 GGN---KLHDISALKELTNLTYLILTGNQLQSLPNGVFDK------------LTNLK--- 112
Query: 183 RVLFYDGRAGECYIAVELFSSRI-RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSK 241
+ L +++ + V + + Y +L++NQ+ L F L+
Sbjct: 113 --------------ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301
L++L LSYN+LQ + L L+ + L+ N + +P+G F L ++ ++ + NP
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218
Query: 302 CDC-GLAWLSEWVKR---------DYVEPGIARC 325
C C G+ +LSEW+ + V P A+C
Sbjct: 219 CTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 252
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 103 bits (259), Expect = 2e-25
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 54/228 (23%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CPS CSC GT V+C +G +P IP TT L L N + + +G+F L +L +L L
Sbjct: 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYL 59
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
N++ + + F
Sbjct: 60 GGNKLQSLPNGVF----------------------------------------------- 72
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
N S Y +LS NQ+ L N F L++L +L L+ N+LQ + L L+
Sbjct: 73 -----NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVK 314
+ L+ N + +P+G F L ++ ++ + NP C C G+ +LSEW+
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 175
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 105 bits (264), Expect = 7e-25
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 14/163 (8%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAG---LKSLRIISLHGNDISM 278
L NN I + F +++L +L LS N++ + + L L ++ L N +
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 279 IPEGAFADLHAITH--LAIGGNPLYCDCGLAWLSEWVKRDYVEPGI-----ARCTEPASM 331
+P L A L + NPL CDC L L + + + C +
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKL 237
Query: 332 RDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEP 374
+ L F C E + C +
Sbjct: 238 HNIFSL----DFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMT 276
Score = 99 bits (249), Expect = 6e-23
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
+CP+ C C + CS++ L +P+ +P YT L L+ N + +++++ RL NL L
Sbjct: 10 VSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSL 69
Query: 146 DLRRNQVTGIEDNAFEG 162
L N + I AF
Sbjct: 70 LLSHNHLNFISSEAFVP 86
Score = 82.2 bits (203), Expect = 4e-17
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
LS+N + F+S+ F P+ L L LS N L +D + L++L ++ L+ N I ++
Sbjct: 70 LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129
Query: 282 GAFADLHAITHLAIGGNPL 300
AF D+ + L + N +
Sbjct: 130 NAFEDMAQLQKLYLSQNQI 148
Score = 82.2 bits (203), Expect = 5e-17
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 215 PVSTMYRDLSNNQIGFL-SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
P T DLS+N + L + +T + L+ L L+LS+N L I +A + +LR + L
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
N + + E F+DL A+ L + N +
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHI 124
Score = 46.4 bits (110), Expect = 2e-05
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L+L +N I + F + L KL L +NQ++ +
Sbjct: 115 EVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Score = 34.0 bits (78), Expect = 0.11
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 118 TELILNDNEIGKIKSDGLFG---RLPNLIKLDLRRNQVTGIEDNAFEGENDQGC----LG 170
+L L+ N+I + L +LP L+ LDL N++ + + L
Sbjct: 139 QKLYLSQNQISRF-PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197
Query: 171 DNYCPPKCTCTVRVLF 186
+N P +C C + LF
Sbjct: 198 NN--PLECDCKLYQLF 211
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 107 bits (268), Expect = 1e-24
Identities = 46/249 (18%), Positives = 95/249 (38%), Gaps = 61/249 (24%)
Query: 83 LIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPL---YTTELILNDNEIGKI-KSDGLFGR 138
++ CPS S +D S L + + LIL N++ ++ K + +
Sbjct: 314 MVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372
Query: 139 LPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAV 198
+ +L +LD+ +N V+ Y K C
Sbjct: 373 MKSLQQLDISQNSVS-------------------YDEKKGDC------------------ 395
Query: 199 ELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD 258
++ S + ++S+N + ++ L L NK++ I +
Sbjct: 396 --------------SWTKSLLSLNMSSNIL--TDTIFRCLPPRIKVLDLHSNKIKSIPKQ 439
Query: 259 ALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKRDY 317
+ L++L+ +++ N + +P+G F L ++ + + NP C C + +LS W+ ++
Sbjct: 440 VV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 498
Query: 318 -VEPGIARC 325
E G A+C
Sbjct: 499 QKEQGSAKC 507
Score = 75.3 bits (185), Expect = 2e-14
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
T ++S N I L LSKL LI+S+N++Q +D + L + L N
Sbjct: 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
+ I + HL + N
Sbjct: 80 KLVKIS---CHPTVNLKHLDLSFNAF 102
Score = 71.4 bits (175), Expect = 3e-13
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 99 VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDN 158
VD S+ GL +PKD+ TT L ++ N I ++ L L L + N++ ++ +
Sbjct: 5 VDRSKNGLIHVPKDLSQKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDIS 63
Query: 159 AFEG 162
F+
Sbjct: 64 VFKF 67
Score = 64.5 bits (157), Expect = 4e-11
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
++ + + + S +S L S N L + L L + L N + +
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363
Query: 280 PE--GAFADLHAITHLAIGGNPL 300
+ + ++ L I N +
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSV 386
Score = 61.8 bits (150), Expect = 4e-10
Identities = 8/81 (9%), Positives = 27/81 (33%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
+ ++ GF ++ + S ++ + + + + + + + N ++
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339
Query: 280 PEGAFADLHAITHLAIGGNPL 300
L + L + N L
Sbjct: 340 VFENCGHLTELETLILQMNQL 360
Score = 51.8 bits (124), Expect = 4e-07
Identities = 26/233 (11%), Positives = 49/233 (21%), Gaps = 37/233 (15%)
Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG--- 162
L +I + L L+ N + FG + L L L +
Sbjct: 81 LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140
Query: 163 -------------ENDQGCLGD----------------NYCPPKCTCTVRVLFYDGRAGE 193
+ D L D ++ TV L
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
+ I + ++ F+ + + +S KLQ
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260
Query: 254 CIDRDALA-----GLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301
LK+L I + + + + +
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313
Score = 44.1 bits (104), Expect = 1e-04
Identities = 22/209 (10%), Positives = 57/209 (27%), Gaps = 11/209 (5%)
Query: 103 QRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFG-RLPNLIKLDLRRNQVTGIEDNAFE 161
++ + + L+L + K +GL +L + + I D + +
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187
Query: 162 GENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC-----YIAVELFSSRIRVSYYVGNYPV 216
+ C+ + + + + +
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247
Query: 217 STMYRDLSNNQIGFLSNF-----TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISL 271
+ Y +SN ++ +F + + L LS + + ++ I +
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 272 HGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ M+ + + HL N L
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Score = 32.5 bits (74), Expect = 0.37
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+ + ++ + LD N +T
Sbjct: 303 NIKNFTVSGTRMV-HMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 102 bits (256), Expect = 4e-23
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 17/164 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+SNN++ L+ P+ L L LS+N L ++R+ L + L N I +
Sbjct: 284 YISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKL 341
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDY------------VEPGIARCTEPA 329
L +L + N C+ A + +E G+
Sbjct: 342 STHHTL---KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK 398
Query: 330 SMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCE 373
D+LL +S K + + S + + + +
Sbjct: 399 PYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQ 442
Score = 93.5 bits (232), Expect = 4e-20
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L++ QI + + F+ + +L + +N ++ + + L ++ L ND+S +P
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140
Query: 282 GAFADLHAITHLAIGGNPL 300
G F + +T L++ N L
Sbjct: 141 GIFHNTPKLTTLSMSNNNL 159
Score = 91.5 bits (227), Expect = 2e-19
Identities = 18/79 (22%), Positives = 33/79 (41%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+ N I +L F + L+ L+L N L + R L +S+ N++ I +
Sbjct: 105 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164
Query: 282 GAFADLHAITHLAIGGNPL 300
F ++ +L + N L
Sbjct: 165 DTFQATTSLQNLQLSSNRL 183
Score = 90.4 bits (224), Expect = 3e-19
Identities = 16/79 (20%), Positives = 34/79 (43%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
N+ + L ++ L L+ +++ ID A A +++ + + N I +P
Sbjct: 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116
Query: 282 GAFADLHAITHLAIGGNPL 300
F ++ +T L + N L
Sbjct: 117 HVFQNVPLLTVLVLERNDL 135
Score = 83.4 bits (206), Expect = 5e-17
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L N + L F KL+ L +S N L+ I+ D SL+ + L N ++ +
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188
Query: 282 GAFADLHAITHLAIGGNPL 300
L H + N L
Sbjct: 189 SLIPSLF---HANVSYNLL 204
Score = 81.9 bits (202), Expect = 2e-16
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 213 NYPVSTMYRD--LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIIS 270
N ++ D + F L+ + + ++ + L + + +++
Sbjct: 22 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81
Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L+ I I AFA H I L +G N +
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111
Score = 64.9 bits (158), Expect = 4e-11
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
LS+N++ ++ S + L +SYN L LA ++ + N I+++
Sbjct: 177 QLSSNRL---THVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRG 228
Query: 282 GAFADLHAITHLAIGGNPL 300
+L T L + N L
Sbjct: 229 PVNVEL---TILKLQHNNL 244
Score = 64.2 bits (156), Expect = 6e-11
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++S N + T + + +L S+N + + L L+ L N+++
Sbjct: 198 NVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLTDTA- 248
Query: 282 GAFADLHAITHLAIGGNPL 300
+ + + + N L
Sbjct: 249 -WLLNYPGLVEVDLSYNEL 266
Score = 63.4 bits (154), Expect = 1e-10
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 84 IDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNL 142
ID+ C +D + + +DI L + ++ + K+ L +
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQV 77
Query: 143 IKLDLRRNQVTGIEDNAFEG 162
L+L Q+ I+ AF
Sbjct: 78 ELLNLNDLQIEEIDTYAFAY 97
Score = 54.9 bits (132), Expect = 5e-08
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 106 LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
++ +P + L+L N++ + G+F P L L + N + IED+ F+
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Score = 53.0 bits (127), Expect = 2e-07
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 106 LKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
++EI +T +L + N I + +F +P L L L RN ++ + F
Sbjct: 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Score = 46.5 bits (110), Expect = 2e-05
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
L +++N + + + +P L LDL N + +E N + +
Sbjct: 281 ERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325
Score = 41.8 bits (98), Expect = 5e-04
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
E+ L+ NE+ KI F ++ L +L + N++ + + +
Sbjct: 257 VEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVAL-NLYGQP 299
Score = 41.1 bits (96), Expect = 9e-04
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 106 LKEIPKDI-PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L + P+ T L L+ N + ++ + + L L L N + ++ +
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERN--QPQFDRLENLYLDHNSIVTLKLSTHHT 346
Score = 40.7 bits (95), Expect = 0.001
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 18/157 (11%)
Query: 106 LKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ-----VTGIEDN 158
L + ++ P + L L+ N I +K L L L N + + N
Sbjct: 313 LLHVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFRN 368
Query: 159 AFE---GENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYP 215
+ DQ C D C Y R + + R
Sbjct: 369 VARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQ----GRC 424
Query: 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKL 252
+T + + +++ PL QL N+L
Sbjct: 425 SATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461
Score = 39.5 bits (92), Expect = 0.003
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 20/74 (27%)
Query: 106 LKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRL----------------PNLIKLD 146
L+ I D + L L+ N + + L L + +LD
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217
Query: 147 LRRNQVTGIEDNAF 160
N + +
Sbjct: 218 ASHNSINVVRGPVN 231
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 92.5 bits (230), Expect = 1e-22
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 429 GDRCEIN-IDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNG 487
GD+C + ++ + C + TC+D I ++ C C G++G FCQ + F +
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 488 ARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVD 530
CL+ C C PG+ + + V C ++
Sbjct: 66 HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 73.2 bits (180), Expect = 6e-16
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDA--CYGNPCRNSGTCKLLE 415
S C G C + C C G+ G+ C+ + C + + C L E
Sbjct: 14 LEHPCASLCCGHGTCIDGI-GSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYC-LEE 71
Query: 416 EGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVD 452
G C CAPGY + + C ++
Sbjct: 72 VGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 64.7 bits (158), Expect = 6e-13
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT--VNVDDCVNHMCQNGGTCVDGI 532
P + C C+D ++C+C G+ G C V+ +C C++ +
Sbjct: 13 PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEV 72
Query: 533 NDYTCKCEGDFVGKFCEI 550
C C + +
Sbjct: 73 GWRRCSCAPGYKLGDDLL 90
Score = 55.9 bits (135), Expect = 8e-10
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 502 TPGFSGVNCTVN-VDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQ 560
+ G C V ++ +C GTC+DGI ++C C + G+FC+ V+ +
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE--VSFLNCS 58
Query: 561 TSPCQ-HHDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
H C + C CAPGY +
Sbjct: 59 LDNGGCTHYCLEEV-------GWRRCSCAPGYKLGD 87
Score = 45.9 bits (109), Expect = 2e-06
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSND 59
GTC+DGI ++C C + G+FC+ V+ + H C +
Sbjct: 24 GHGTCIDGIGSFSCDCRSGWEGRFCQRE--VSFLNCSLDNGGCTHYCLEEV-------GW 74
Query: 60 YLCKCAPGYSG 70
C CAPGY
Sbjct: 75 RRCSCAPGYKL 85
Score = 27.8 bits (62), Expect = 3.9
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEI 27
C++ + C C + +
Sbjct: 64 CTHYCLEEVGWRRCSCAPGYKLGDDLL 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 99 bits (249), Expect = 2e-22
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 5/128 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L N I + +KL L LS NKL + + ISL N + +I +
Sbjct: 175 NLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK 231
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP-GIARCTEPASMRDKLLLTAP 340
A + H + GN +C + S+ + V + + T +
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290
Query: 341 ASSFQCKE 348
++ C++
Sbjct: 291 YGAYCCED 298
Score = 81.4 bits (201), Expect = 2e-16
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++++ + + +L LS N L I LA L +++L N + +
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Query: 282 GAFADLHAITHLAIGGNPL 300
L + L + N +
Sbjct: 76 --LESLSTLRTLDLNNNYV 92
Score = 78.4 bits (193), Expect = 1e-15
Identities = 23/207 (11%), Positives = 53/207 (25%), Gaps = 27/207 (13%)
Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
+ ++ + L L+ N++ + + F + + LR N++ IE A
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIE-KALRFSQ 237
Query: 165 -----DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM 219
D L N C R F + + + ++ +
Sbjct: 238 NLEHFD---LRGN--GFHCGTL-RDFFSKNQRVQ-----TVAKQTVKKLTGQNEEECTVP 286
Query: 220 Y-RDLSNNQI-----GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
F + + L ++ + ++ + + R I
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR-QREIDALK 345
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
+ + A L L
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKAL 372
Score = 76.8 bits (189), Expect = 5e-15
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DL+NN + + L + N + + G K++ L N I+M+ +
Sbjct: 86 DLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRD 137
Query: 282 GAFADLHAITHLAIGGNPL 300
+ +L + N +
Sbjct: 138 LDEGCRSRVQYLDLKLNEI 156
Score = 73.0 bits (179), Expect = 8e-14
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+NN I +S + L+ NK+ + ++ + L N+I +
Sbjct: 105 HAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 282 GAF-ADLHAITHLAIGGNPL 300
A + HL + N +
Sbjct: 162 AELAASSDTLEHLNLQYNFI 181
Score = 72.2 bits (177), Expect = 2e-13
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS N + +S +P +KL L LS N L L L +LR + L+ N + +
Sbjct: 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV 97
Query: 282 GAFADLHAITHLAIGGNPL 300
+I L N +
Sbjct: 98 -----GPSIETLHAANNNI 111
Score = 71.0 bits (174), Expect = 4e-13
Identities = 21/222 (9%), Positives = 51/222 (22%), Gaps = 55/222 (24%)
Query: 106 LKEIPKDI-PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ------------ 151
L + + T + L +N++ I+ NL DLR N
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 152 ---VTGIEDNAFE---GENDQGC-------LGDNYCPPKCTCTVRVLFYDGRAGECYIAV 198
V + + G+N++ C G C + F D +
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED-----LPAPFADR-------LI 308
Query: 199 ELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD 258
L + ++ L + ++ ++ + + +
Sbjct: 309 ALKRKEHALL-------------SGQGSETERLECEREN-QARQREIDALKEQYRTVIDQ 354
Query: 259 ALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
++ + + +
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
Score = 70.3 bits (172), Expect = 6e-13
Identities = 10/62 (16%), Positives = 23/62 (37%)
Query: 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
++ ++ + L+ +++ + L GN +S I A + L + N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 299 PL 300
L
Sbjct: 69 VL 70
Score = 56.4 bits (136), Expect = 1e-08
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 105 GLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+ EI ++ + D+ + + L N+ +LDL N ++ I
Sbjct: 1 AIHEIKQNGNR-YKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Score = 53.7 bits (129), Expect = 9e-08
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+ + + L +N+I + D G + LDL+ N++ +
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166
Score = 52.5 bits (126), Expect = 2e-07
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
L L NEI + L L L+L+ N + ++
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Score = 45.6 bits (108), Expect = 4e-05
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 106 LKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
LK+ + + EL L+ N + +I S L L+L N + D
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD 75
Score = 43.3 bits (102), Expect = 2e-04
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 257 RDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ +I + + + + L + GNPL
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46
Score = 42.1 bits (99), Expect = 5e-04
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
L L+ N + + L L LDL N V +
Sbjct: 61 ELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL 95
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 96.7 bits (240), Expect = 1e-21
Identities = 33/200 (16%), Positives = 52/200 (26%), Gaps = 23/200 (11%)
Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYG-----NPCRNSGTCKLLE 415
+ C N GVC +C C PG+ G+ CE + C CK
Sbjct: 200 HLCTACMNNGVCHEDT---GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYV 256
Query: 416 E---GRFNCECAPGYTGDRCEINIDDCLSHK-------CENNATCVDLIQAYECRCAPGF 465
+ C CA G+ G +C C N C C C+PG+
Sbjct: 257 FCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDR---FQGCLCSPGW 313
Query: 466 QGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECT-PGFSGVNCTVNVDDCVNHMCQN 524
QG C+ + + + C G+ + +
Sbjct: 314 QGLQCEREGIPR-MTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLH 372
Query: 525 GGTCVDGINDYTCKCEGDFV 544
+ +
Sbjct: 373 PKDFNHTDHFSVAIFTIHRI 392
Score = 87.1 bits (215), Expect = 2e-18
Identities = 38/227 (16%), Positives = 49/227 (21%), Gaps = 32/227 (14%)
Query: 381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCL 440
+ H H + Y C G C L
Sbjct: 147 EVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECN-----HL 201
Query: 441 SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYN---PCRNGARCLDHFS-- 495
C NN C + EC C PGF G C+ C C +
Sbjct: 202 CTACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL 259
Query: 496 --HYTCECTPGFSGVNCTVNVDDC-------VNHMCQNGGTCVDGINDYTCKCEGDFVGK 546
Y C C G+ G+ C + C NG C C C + G
Sbjct: 260 PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCD---RFQGCLCSPGWQGL 316
Query: 547 FCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
CE + A G+
Sbjct: 317 QCER--------EGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPL 355
Score = 79.0 bits (194), Expect = 7e-16
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 19/163 (11%)
Query: 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNP-------CRNSGTCKLLEE 416
C + C P P Y C C G+ G C + P C N C +
Sbjct: 250 EGCKSYVFCLPDP---YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC----D 302
Query: 417 GRFNCECAPGYTGDRCEI-NIDDCLSHKCENNATCVDLIQAYECRC-APGFQGEFCQTKT 474
C C+PG+ G +CE I + + C A G+ + T
Sbjct: 303 RFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMT 362
Query: 475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDC 517
+ + +H H++ + V C
Sbjct: 363 LVKP---DGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVC 402
Score = 55.1 bits (132), Expect = 3e-08
Identities = 30/139 (21%), Positives = 42/139 (30%), Gaps = 14/139 (10%)
Query: 460 RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTC--ECTPGFSGVNCTVNVDDC 517
P P AG Y+ G C G C +
Sbjct: 146 HEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPEC-----NH 200
Query: 518 VNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA-PFVAMMYPQTSPCQHHD-CKNGICF 575
+ C N G C + + C C F+G+ CE A C + CK+ +
Sbjct: 201 LCTACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC 258
Query: 576 QPQGSNDYLCKCAPGYSGK 594
P + Y C CA G+ G
Sbjct: 259 LP---DPYGCSCATGWKGL 274
Score = 37.4 bits (86), Expect = 0.012
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIA-PFVAMMYPQTSPCQHHD-CKNGICFQPQGSN 58
N G C + + C C F+G+ CE A C + CK+ + P +
Sbjct: 207 NNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLP---D 261
Query: 59 DYLCKCAPGYSG----VEEFRTRYAGDCLIDAACPSGCSCDGT 97
Y C CA G+ G Y DC + +C +G CD
Sbjct: 262 PYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRF 304
Score = 33.1 bits (75), Expect = 0.23
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 8/102 (7%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
+ C+ + Y C C + G C A + C NG
Sbjct: 254 SYVFCLP--DPYGCSCATGWKGLQCNEA--CHPGFYGPDCKLRCSCNNGEM----CDRFQ 305
Query: 61 LCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCS 102
C C+PG+ G++ R P + + +
Sbjct: 306 GCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPI 347
Score = 28.5 bits (63), Expect = 7.5
Identities = 6/82 (7%), Positives = 13/82 (15%), Gaps = 2/82 (2%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
E + G+ E M +
Sbjct: 323 IPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKP-DGTVLHPKD-FNHTD 380
Query: 418 RFNCECAPGYTGDRCEINIDDC 439
F+ + + + C
Sbjct: 381 HFSVAIFTIHRILPPDSGVWVC 402
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 94.3 bits (235), Expect = 2e-21
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 5/128 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L N I + +KL L LS NKL + + ISL N + +I +
Sbjct: 175 NLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK 231
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVK-RDYVEPGIARCTEPASMRDKLLLTAP 340
A + H + GN +C + S+ + + + + + T +
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290
Query: 341 ASSFQCKE 348
++ C++
Sbjct: 291 YGAYCCED 298
Score = 78.5 bits (194), Expect = 5e-16
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++++ + + +L LS N L I LA L +++L N + +
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Query: 282 GAFADLHAITHLAIGGNPL 300
L + L + N +
Sbjct: 76 --LESLSTLRTLDLNNNYV 92
Score = 74.6 bits (184), Expect = 1e-14
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DL+NN + + L + N + + G K++ L N I+M+ +
Sbjct: 86 DLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRD 137
Query: 282 GAFADLHAITHLAIGGNPL 300
+ +L + N +
Sbjct: 138 LDEGCRSRVQYLDLKLNEI 156
Score = 70.8 bits (174), Expect = 1e-13
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DLS N + +S +P +KL L LS N L L L +LR + L+ N + +
Sbjct: 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV 97
Query: 282 GAFADLHAITHLAIGGNPL 300
+I L N +
Sbjct: 98 -----GPSIETLHAANNNI 111
Score = 69.2 bits (170), Expect = 5e-13
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+NN I +S + L+ NK+ + ++ + L N+I +
Sbjct: 105 HAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 282 GAF-ADLHAITHLAIGGNPL 300
A + HL + N +
Sbjct: 162 AELAASSDTLEHLNLQYNFI 181
Score = 68.5 bits (168), Expect = 8e-13
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
++ ++ + L+ +++ + L GN +S I A + L +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 296 GGNPL 300
N L
Sbjct: 66 SSNVL 70
Score = 53.1 bits (128), Expect = 9e-08
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 105 GLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+ EI ++ + D+ + + L N+ +LDL N ++ I
Sbjct: 1 AIHEIKQNGN-RYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Score = 52.7 bits (127), Expect = 1e-07
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+ + + L +N+I + D G + LDL+ N++ +
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166
Score = 51.5 bits (124), Expect = 3e-07
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
L L NEI + L L L+L+ N + ++
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Score = 47.7 bits (114), Expect = 6e-06
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
+ ++ + L L+ N++ + + F + + LR N++ IE
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231
Score = 44.6 bits (106), Expect = 5e-05
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 106 LKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
LK+ + + EL L+ N + +I S L L+L N + D
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD 75
Score = 43.4 bits (103), Expect = 1e-04
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 257 RDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ +I + + + + L + GNPL
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46
Score = 40.7 bits (96), Expect = 8e-04
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
L L+ N + + L L LDL N V +
Sbjct: 61 ELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL 96
Score = 40.4 bits (95), Expect = 0.001
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDN 158
L L N I + + L LDL N++ +
Sbjct: 172 EHLNLQYNFIYDV-KGQVV--FAKLKTLDLSSNKLAFMGPE 209
Score = 38.4 bits (90), Expect = 0.005
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 106 LKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE 163
L + + T + L +N++ I+ NL DLR N F +
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 164 NDQ 166
N +
Sbjct: 261 NQR 263
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 94.7 bits (236), Expect = 4e-21
Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 60/229 (26%)
Query: 106 LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
++ +P + L+L N++ + G+F P L L + N + IED+ F
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTF-- 161
Query: 163 ENDQGC-------LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSS--RIRVSY-YVG 212
Q L N R+ ++ + L S VSY +
Sbjct: 162 ---QATTSLQNLQLSSN----------RLT---------HVDLSLIPSLFHANVSYNLLS 199
Query: 213 NYPVSTMYRDL--SNNQIGFLSNFTFS-------------------PLSKLSQLILSYNK 251
+ +L S+N I + L ++ LSYN+
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259
Query: 252 LQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L+ I ++ L + + N + + + + L + N L
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHL 307
Score = 93.2 bits (232), Expect = 1e-20
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 15/127 (11%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+SNN++ L+ P+ L L LS+N L ++R+ L + L N I +
Sbjct: 278 YISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKL 335
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
L +L + N C+ A R V+ C + L
Sbjct: 336 STHHTL---KNLTLSHNDWDCNSLRALFRNV-ARPAVDDADQHCKIDYQLEHGL------ 385
Query: 342 SSFQCKE 348
CKE
Sbjct: 386 ---CCKE 389
Score = 90.9 bits (226), Expect = 8e-20
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L++ QI + + F+ + +L + +N ++ + + L ++ L ND+S +P
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134
Query: 282 GAFADLHAITHLAIGGNPL 300
G F + +T L++ N L
Sbjct: 135 GIFHNTPKLTTLSMSNNNL 153
Score = 88.9 bits (221), Expect = 4e-19
Identities = 18/79 (22%), Positives = 33/79 (41%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+ N I +L F + L+ L+L N L + R L +S+ N++ I +
Sbjct: 99 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158
Query: 282 GAFADLHAITHLAIGGNPL 300
F ++ +L + N L
Sbjct: 159 DTFQATTSLQNLQLSSNRL 177
Score = 88.6 bits (220), Expect = 4e-19
Identities = 16/79 (20%), Positives = 34/79 (43%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
N+ + L ++ L L+ +++ ID A A +++ + + N I +P
Sbjct: 51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110
Query: 282 GAFADLHAITHLAIGGNPL 300
F ++ +T L + N L
Sbjct: 111 HVFQNVPLLTVLVLERNDL 129
Score = 82.8 bits (205), Expect = 3e-17
Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 54/213 (25%)
Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165
+ + + + T L L N + P L+++DL N++ I + F
Sbjct: 217 INVVRGPVNVELTILKLQHN---NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273
Query: 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN 225
+ L+ + ++R+ ++ + +
Sbjct: 274 ----------------LERLY-------------ISNNRLVA--------LNLYGQPIPT 296
Query: 226 --------NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
N + + +L L L +N + + LK+L L ND
Sbjct: 297 LKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWD 352
Query: 278 MIPEGAFADLHAITHLAIGGNPLYCDCGLAWLS 310
A + A+ +C
Sbjct: 353 CNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 383
Score = 78.9 bits (195), Expect = 7e-16
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 213 NYPVSTMYRDLSNNQIGF--LSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIIS 270
N ++ D+ + F L+ + + ++ + L + + +++
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75
Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L+ I I AFA H I L +G N +
Sbjct: 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Score = 60.1 bits (146), Expect = 8e-10
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 84 IDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNL 142
ID+ C +D + + +DI L + ++ + K+ L +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQV 71
Query: 143 IKLDLRRNQVTGIEDNAFEG 162
L+L Q+ I+ AF
Sbjct: 72 ELLNLNDLQIEEIDTYAFAY 91
Score = 50.8 bits (122), Expect = 7e-07
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 97 TRVDCSQRGLKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
V ++++P + L LND +I +I F + KL + N +
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIR 106
Query: 154 GIEDNAFEG 162
+ + F+
Sbjct: 107 YLPPHVFQN 115
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 94.0 bits (233), Expect = 5e-21
Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 18/147 (12%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL---SNNQIGF 230
CP C + + L +R + + P + +L + +
Sbjct: 1 CPDACCP--------------HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQH 46
Query: 231 LSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAI 290
L L +L L + + L+ + DA L ++L N + + L +
Sbjct: 47 LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105
Query: 291 THLAIGGNPLYCDCGLAWLSEWVKRDY 317
L + GNPL+C C L WL W +
Sbjct: 106 QELVLSGNPLHCSCALRWLQRWEEEGL 132
Score = 69.0 bits (168), Expect = 8e-13
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 88 CPSGCSCDG-TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIK 144
CP C G + + C++ G + +P TEL + + + + L L
Sbjct: 1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
Query: 145 LDLRRNQVTGIEDNAFEG 162
L + ++ + + +AF
Sbjct: 61 LTIVKSGLRFVAPDAFHF 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 94.2 bits (234), Expect = 2e-20
Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 34/213 (15%)
Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165
+ + P T L N L L L L+RN + A +N
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402
Query: 166 QG-CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLS 224
D L C S + +LS
Sbjct: 403 SSLETLDVSL--------NSLNSHAYDRTCAW------------------AESILVLNLS 436
Query: 225 NNQIGFLSNFTFSPL-SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA 283
+N L+ F L K+ L L N++ I +D L++L+ +++ N + +P+G
Sbjct: 437 SNM---LTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGV 492
Query: 284 FADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR 315
F L ++ ++ + NP C C G+ +LSEW+ +
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 525
Score = 75.3 bits (185), Expect = 2e-14
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 89 PSGCSCD-GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
+ S + + VD S R L +PKD+P T L L+ N I ++ L L L L
Sbjct: 25 MTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISEL-RMPDISFLSELRVLRL 83
Query: 148 RRNQVTGIEDNAFE 161
N++ ++ + F
Sbjct: 84 SHNRIRSLDFHVFL 97
Score = 72.2 bits (177), Expect = 2e-13
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
P T LS N I L S LS+L L LS+N+++ +D + L + + N
Sbjct: 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110
Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYC 302
+ I A L HL + N
Sbjct: 111 RLQNISCCPMASL---RHLDLSFNDFDV 135
Score = 66.0 bits (161), Expect = 2e-11
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
LS+N+I L F L L +S+N+LQ I + SLR + L ND ++P
Sbjct: 82 RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM---ASLRHLDLSFNDFDVLPV 138
Query: 282 GA-FADLHAITHLAIGGNPL 300
F +L +T L +
Sbjct: 139 CKEFGNLTKLTFLGLSAAKF 158
Score = 62.2 bits (151), Expect = 3e-10
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL-AGLKSLRIISLHGNDISMIP 280
D+S+N+ L N + P++ L L LS+N + L L + L +
Sbjct: 106 DVSHNR---LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162
Query: 281 EGAFADLHAITHL 293
A LH L
Sbjct: 163 LLPVAHLHLSCIL 175
Score = 58.0 bits (140), Expect = 5e-09
Identities = 15/91 (16%), Positives = 29/91 (31%)
Query: 210 YVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRII 269
Y S M + N F +S ++++ +LS + I S +
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358
Query: 270 SLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ N + + L + L + N L
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
Score = 48.7 bits (116), Expect = 4e-06
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
+ LS + F+ S + L + N + LK L+ + L N +
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392
Query: 280 PEGAF--ADLHAITHLAIGGNPL 300
+ A ++ ++ L + N L
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSL 415
Score = 41.0 bits (96), Expect = 0.001
Identities = 30/206 (14%), Positives = 56/206 (27%), Gaps = 40/206 (19%)
Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
L+ I P+ + L L+ N+ + FG L L L L + ++ +
Sbjct: 112 LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLS 224
I ++L S I+ +T L
Sbjct: 171 ----------------------------LSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202
Query: 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL----------AGLKSLRIISLHGN 274
+ S ++ L L LS KL + L L ++ + +
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262
Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
+ F + +L I +
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTI 288
Score = 39.9 bits (93), Expect = 0.002
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 17/210 (8%)
Query: 106 LKEIP----KDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
+++ + L L L I +++ L +PN L L + +
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ--IPNTTVLHLVFHPNSLFSVQVNM 215
Query: 162 GENDQGCLG--DNYCPPKCTCTVRVLFYDGRAGECYIAVEL------FSSRIRVSYYVGN 213
N G L + + + + G + V L + +++ +
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275
Query: 214 YPVSTMY-RDLSNNQIGFLSNFTFS--PLSKLSQLILSYNKLQCIDRDALAGLKSLRIIS 270
PV + +L+ + FT+S L L + + + I
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335
Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L +D I + T L N
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365
Score = 34.1 bits (78), Expect = 0.14
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 100 DCSQRGLKEIPKD----IPLYTTELILNDNEIGKIKSDGLFGRLP-NLIKLDLRRNQVTG 154
D S L D L L+ N + + +F LP + LDL N++
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNML----TGSVFRCLPPKVKVLDLHNNRIMS 464
Query: 155 I 155
I
Sbjct: 465 I 465
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 89.2 bits (221), Expect = 1e-18
Identities = 27/185 (14%), Positives = 52/185 (28%), Gaps = 49/185 (26%)
Query: 118 TELIL-NDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
T++ L N + ++ LP L L++ N+ +
Sbjct: 494 TDVELYNCPNMTQLPDF--LYDLPELQSLNIACNRGISAAQLKADWTRLADDED------ 545
Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI-GFLSNFT 235
+++ + N + F ++ +
Sbjct: 546 -TGPKIQIF------------------------------------YMGYNNLEEFPASAS 568
Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
+ KL L +NK++ + +A L + L N I IPE A + L
Sbjct: 569 LQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626
Query: 296 GGNPL 300
N L
Sbjct: 627 SHNKL 631
Score = 87.6 bits (217), Expect = 4e-18
Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 58/206 (28%)
Query: 106 LKEIPKDIPLYT---TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
++EIP+D +T L + N++ I + + + +D N++ N
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666
Query: 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRD 222
+D + +
Sbjct: 667 MDDYKGI-----------NASTV------------------------------------T 679
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA-------LAGLKSLRIISLHGND 275
LS N+I F+ S +S +ILS N + I ++ L I L N
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739
Query: 276 ISMIPEG-AFADLHAITHLAIGGNPL 300
++ + + L ++++ + N
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCF 765
Score = 80.3 bits (198), Expect = 8e-16
Identities = 28/217 (12%), Positives = 49/217 (22%), Gaps = 62/217 (28%)
Query: 106 LKEIPKDIPLYT----------TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
+ IP++ T + L N++ + D LP L +D+ N +
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Query: 156 EDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYP 215
P L
Sbjct: 769 --------------------PTQPLNSSQL------------KAFGIRH----------- 785
Query: 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND 275
RD N+I + L QL + N ++ +D L I+ + N
Sbjct: 786 ----QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNP 838
Query: 276 ISMIPEGAFADLH--AITHLAIGGNPLYCDCGLAWLS 310
I + + L C +
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 76.5 bits (188), Expect = 1e-14
Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 62/219 (28%)
Query: 106 LKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
L+E P L L N++ +++ FG L L L NQ+ I ++
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEA---FGTNVKLTDLKLDYNQIEEIPEDFCA 616
Query: 162 GENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR 221
+ V L ++++ P +
Sbjct: 617 FTDQ----------------VEGLG-------------FSHNKLKYI------PNIFNAK 641
Query: 222 DLSN--------NQIGFLSNFTFSPLS-----KLSQLILSYNKLQCIDRDALAGLKSLRI 268
+ N+IG + S + LSYN++Q + A +
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701
Query: 269 ISLHGNDISMIPE-------GAFADLHAITHLAIGGNPL 300
I L N ++ IPE G + + + +T + + N L
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740
Score = 71.4 bits (175), Expect = 4e-13
Identities = 29/226 (12%), Positives = 57/226 (25%), Gaps = 67/226 (29%)
Query: 100 DCSQRGLKEIPKDIP--------LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
D Q + P+ P L T++ N I I RL L + +
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA--IQRLTKLQIIYFANSP 459
Query: 152 VTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYV 211
T AV+ + +
Sbjct: 460 FTYD-------------------NI--------------------AVDWEDANSDYAKQY 480
Query: 212 GNYPVS----TMYRDL---SNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR------- 257
N +S D+ + + L + L +L L ++ N+ +
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTR 539
Query: 258 --DALAGLKSLRIISLHGNDISMIP-EGAFADLHAITHLAIGGNPL 300
D ++I + N++ P + + + L N +
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585
Score = 63.0 bits (153), Expect = 2e-10
Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 33/209 (15%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
T L L D G+L L L + T + E + +
Sbjct: 326 TGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNF--- 234
L YD R +L I + + + L + QIG L+N
Sbjct: 385 MHYKKMFLDYDQRLNLS----DLLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITF 439
Query: 235 ---TFSPLSKLSQLILSYNKLQCIDR-------------------DALAGLKSLRIISL- 271
L+KL + + + + + + LK L + L
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499
Query: 272 HGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ +++ +P+ DL + L I N
Sbjct: 500 NCPNMTQLPD-FLYDLPELQSLNIACNRG 527
Score = 46.8 bits (111), Expect = 2e-05
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D+ +Q G +++ L L+ + DA+ L L+++S + ++
Sbjct: 309 DMWGDQPGV----DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364
Query: 282 GAF 284
Sbjct: 365 LFG 367
Score = 44.5 bits (105), Expect = 9e-05
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
+ + D + N + + + ++ L LD N+V
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587
Query: 155 IED 157
+E
Sbjct: 588 LEA 590
Score = 32.9 bits (75), Expect = 0.35
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 259 ALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L + +SL G A L + L+ G +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 87.1 bits (215), Expect = 5e-18
Identities = 45/236 (19%), Positives = 68/236 (28%), Gaps = 41/236 (17%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPG------YHGQHCEFMIDAC---YGNPCRNS 408
C+ G C QC C +GQ+CE C G C
Sbjct: 476 RKDNNSIICSGLGDCVC-----GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP 530
Query: 409 GTCKLLEEGRFNCECAPGYTGDRCEINID-----DCLSHKCENNATCVDLIQAYECRCAP 463
G C C PG+ G C+ + +C C C C
Sbjct: 531 GRGLCFCG---KCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHS 583
Query: 464 GFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNV-DDCVNHMC 522
G+Q CQ C G +PC C + + G G NC+ +++
Sbjct: 584 GYQLPLCQE----CPGCPSPCGKYISCAE-----CLKFEKGPFGKNCSAACPGLQLSNNP 634
Query: 523 QNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH--DCKNGICFQ 576
G TC + C + + + + ++ C C + FQ
Sbjct: 635 VKGRTC---KERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPDGCGENLYFQ 687
Score = 84.4 bits (208), Expect = 3e-17
Identities = 51/260 (19%), Positives = 74/260 (28%), Gaps = 54/260 (20%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
+ +S C +G E CRC GY G++CE G+C+
Sbjct: 429 DQSRDRSLCHGKGFLEC-----GICRCDTGYIGKNCECQTQGRSSQEL--EGSCRKDNNS 481
Query: 418 RF----------NCECAPG------YTGDRCEINIDDCLSHK---CENNATCVDLIQAYE 458
C C G CE + +C + C + +
Sbjct: 482 IICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLC--FCGK 539
Query: 459 CRCAPGFQGEFCQTKTPFC---AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVD 515
CRC PGF+G CQ + C RC CEC G+ C
Sbjct: 540 CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHSGYQLPLCQEC-- 593
Query: 516 DCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICF 575
C +C + K E GK C A + +P + CK
Sbjct: 594 PGCPSPCGKYISCAE-----CLKFEKGPFGKNCSAACPGLQL--SNNPVKGRTCKERDS- 645
Query: 576 QPQGSNDYLCKCAPGYSGKE 595
C Y+ ++
Sbjct: 646 ---------EGCWVAYTLEQ 656
Score = 71.3 bits (174), Expect = 5e-13
Identities = 36/251 (14%), Positives = 59/251 (23%), Gaps = 40/251 (15%)
Query: 362 YKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNC 421
Y S C+N P + C F + +
Sbjct: 360 YDSFCSNGVTHRNQP----RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIV 415
Query: 422 ECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEY 481
+ C C CRC G+ G+ C+ +T + +
Sbjct: 416 TVQVLPQCE-CRCRDQSRDRSLCHGKGFLEC----GICRCDTGYIGKNCECQTQGRSSQE 470
Query: 482 N--PCRNGARCLDHFSHYTCEC-----------TPGFSGVNCTVNVDDCVNH-----MCQ 523
CR + C C G C + +C +
Sbjct: 471 LEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP 530
Query: 524 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 583
G C G C+C F G C+ + + + + C
Sbjct: 531 GRGLCFCG----KCRCHPGFEGSACQC---------ERTTEGCLNPRRVECSGRGRCRCN 577
Query: 584 LCKCAPGYSGK 594
+C+C GY
Sbjct: 578 VCECHSGYQLP 588
Score = 37.0 bits (85), Expect = 0.020
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 22/101 (21%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
G C G C+C F G C+ + + + + C
Sbjct: 531 GRGLCFCG----KCRCHPGFEGSACQC---------ERTTEGCLNPRRVECSGRGRCRCN 577
Query: 61 LCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDC 101
+C+C GY C CPS C + +C
Sbjct: 578 VCECHSGYQLP---------LCQECPGCPSPCGKYISCAEC 609
Score = 31.6 bits (71), Expect = 0.93
Identities = 12/97 (12%), Positives = 17/97 (17%), Gaps = 21/97 (21%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
G C C+C + C+ P C S
Sbjct: 570 GRGRCRCN----VCECHSGYQLPLCQ-----------ECPGCPSPCGKY------ISCAE 608
Query: 61 LCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGT 97
K G G + C +
Sbjct: 609 CLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDS 645
Score = 28.9 bits (64), Expect = 5.4
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 13/106 (12%)
Query: 1 NGGTCVDG--INDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN 58
G CV G + + G++CE + + G+C
Sbjct: 486 GLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINC---ERYNGQVCGGPGRGLC------F 536
Query: 59 DYLCKCAPGYSGV--EEFRTRYAGDCLIDAACPSGCSCDGTRVDCS 102
C+C PG+ G + RT C C +C
Sbjct: 537 CGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECH 582
Score = 28.9 bits (64), Expect = 6.3
Identities = 18/152 (11%), Positives = 31/152 (20%), Gaps = 40/152 (26%)
Query: 443 KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECT 502
++NA L Y+ C+ G C +
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPR---------------GDCDGVQINVPITFQ 390
Query: 503 PGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTS 562
+ C + + V + C+C
Sbjct: 391 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQ-------------------- 430
Query: 563 PCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK 594
C + +C+C GY GK
Sbjct: 431 SRDRSLCHGKGFLECG-----ICRCDTGYIGK 457
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 83.7 bits (206), Expect = 3e-17
Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 15/159 (9%)
Query: 381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCL 440
+ I C T + + + CEC TG C +
Sbjct: 275 FVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQ 334
Query: 441 SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCE 500
+ + + + + C P C E C+NG C + + C
Sbjct: 335 GRPW-SPGSYLPIPKGAANACIPSISSIGTNV----CDNELLHCQNGGTCHN---NVRCL 386
Query: 501 CTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC 539
C ++G+ C + C+ G+C
Sbjct: 387 CPAAYTGILC----EKL---RCEEAGSCGSDSGQGAPPH 418
Score = 75.3 bits (184), Expect = 1e-14
Identities = 23/151 (15%), Positives = 37/151 (24%), Gaps = 16/151 (10%)
Query: 355 LSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLL 414
+S + C + C C G C G P G+ +
Sbjct: 288 ISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSP-GSYLPI 346
Query: 415 EEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT 474
+G C P + + ++ L C+N TC + C C + G C+
Sbjct: 347 PKG-AANACIPSISSIGTNVCDNELLH--CQNGGTCHN---NVRCLCPAAYTGILCEK-- 398
Query: 475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGF 505
C C
Sbjct: 399 --LR-----CEEAGSCGSDSGQGAPPHGTHH 422
Score = 68.7 bits (167), Expect = 1e-12
Identities = 35/161 (21%), Positives = 47/161 (29%), Gaps = 28/161 (17%)
Query: 435 NIDDCLSHKCENNA-TCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDH 493
+I KC +A CV C C G C G P G+ L
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQG--RPWSPGS-YLPI 346
Query: 494 FSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPF 553
C P S + V ++ ++ CQNGGTC N+ C C + G CE
Sbjct: 347 PKGAANACIPSISSIGTNVCDNELLH--CQNGGTC---HNNVRCLCPAAYTGILCE---- 397
Query: 554 VAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK 594
+ + G C G G
Sbjct: 398 ---------KLRCEE--AGSCGSDSGQ----GAPPHGTHHH 423
Score = 56.0 bits (134), Expect = 2e-08
Identities = 21/110 (19%), Positives = 28/110 (25%), Gaps = 15/110 (13%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
P + G P+P+ C P + C+N GTC
Sbjct: 330 KKNYQGRPWSP-GSYLPIPK-GAANACIPSISSIGTNVCDNEL--LHCQNGGTC----HN 381
Query: 418 RFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQG 467
C C YTG CE +CE +C
Sbjct: 382 NVRCLCPAAYTGILCE----KL---RCEEAGSCGSDSGQGAPPHGTHHHH 424
Score = 55.2 bits (132), Expect = 3e-08
Identities = 36/233 (15%), Positives = 54/233 (23%), Gaps = 36/233 (15%)
Query: 368 NQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGY 427
+ V + + CT Y + NS + RF P
Sbjct: 190 PKSVKDLSQHTVLEIICTEEYSTGYT------------TNSKIIHFEIKDRFAFFAGPRL 237
Query: 428 TGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCA------GEY 481
D + K + T DL + F A
Sbjct: 238 RNMASLYGQLDT-TKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGR 296
Query: 482 NPCRNGA-RCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCE 540
C A C+ S TCEC +G +C + G+ + C
Sbjct: 297 CKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWS-PGSYLPIPKGAANACI 355
Query: 541 GDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
+ C+NG N+ C C Y+G
Sbjct: 356 PSISSIGTN-----------VCDNELLHCQNG----GTCHNNVRCLCPAAYTG 393
Score = 36.4 bits (83), Expect = 0.026
Identities = 16/77 (20%), Positives = 19/77 (24%), Gaps = 16/77 (20%)
Query: 358 CNACY--KSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLE 415
N C C N G C +C C Y G CE C +G+C
Sbjct: 363 TNVCDNELLHCQNGGTCH----NNVRCLCPAAYTGILCE----KL---RCEEAGSC---G 408
Query: 416 EGRFNCECAPGYTGDRC 432
G
Sbjct: 409 SDSGQGAPPHGTHHHHH 425
Score = 31.0 bits (69), Expect = 1.3
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 15/70 (21%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
+ G+ + C + C+NG N+
Sbjct: 339 SPGSYLPIPKGAANACIPSISSIGTN-----------VCDNELLHCQNG----GTCHNNV 383
Query: 61 LCKCAPGYSG 70
C C Y+G
Sbjct: 384 RCLCPAAYTG 393
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 77.7 bits (192), Expect = 7e-17
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
CPS CSCD T V+C L +P IP L LN+N+I K++ G+F L NL +L
Sbjct: 5 GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEP-GVFDHLVNLQQLY 63
Query: 147 LRRNQVTGIEDNAF 160
N++T I F
Sbjct: 64 FNSNKLTAIPTGVF 77
Score = 63.8 bits (156), Expect = 5e-12
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
P L+NNQI L F L L QL + NKL I L L + L+ N
Sbjct: 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR-----------DYVEPGI 322
+ IP GAF +L ++TH+ + NP C+C + +L WV +P
Sbjct: 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDS 151
Query: 323 ARC 325
A+C
Sbjct: 152 AKC 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 77.3 bits (191), Expect = 9e-17
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
ACPS CSC GT VDCS + L +P IP T L L DN+I K++ G+F RL L +LD
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLD 60
Query: 147 LRRNQVTGIEDNAF 160
L NQ+T + F
Sbjct: 61 LDNNQLTVLPAGVF 74
Score = 63.8 bits (156), Expect = 4e-12
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
P +T L +NQI L F L++L++L L N+L + L L +SL+ N
Sbjct: 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR--------DYVEPGIARC 325
+ IP GAF +L ++TH+ + NP C C + +LS W+ + ++P ARC
Sbjct: 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARC 148
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 82.4 bits (204), Expect = 1e-16
Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 56/206 (27%)
Query: 106 LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+ EIP + +T L N++ I + + + +D N++ ++ F+
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424
Query: 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRD 222
+ G N V + +
Sbjct: 425 LDPTPFKGIN---------VSSI------------------------------------N 439
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA-------LAGLKSLRIISLHGND 275
LSNNQI FS S LS + L N L I +++ L I L N
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Query: 276 ISMIP-EGAFADLHAITHLAIGGNPL 300
++ + + L + + + N
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSF 525
Score = 78.5 bits (194), Expect = 2e-15
Identities = 34/231 (14%), Positives = 62/231 (26%), Gaps = 81/231 (35%)
Query: 102 SQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNA 159
+ + + + L++N+I K LF L ++L N +T I N+
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNS 476
Query: 160 FEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM 219
+ EN+ + +
Sbjct: 477 LKDENENFK--------NTY-LLTSI---------------------------------- 493
Query: 220 YRDLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDR--------------------- 257
DL N++ +F + L L + LSYN
Sbjct: 494 --DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551
Query: 258 --------DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ + SL + + NDI + E ++ + L I NP
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPN 599
Score = 67.0 bits (164), Expect = 8e-12
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
+ NQ+ G L F KL+ L L+YN++ I + + + +S N + IP
Sbjct: 336 ECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393
Query: 281 EGAFAD-LHAITHLAIGGNPL 300
A + ++ + N +
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEI 414
Score = 57.7 bits (140), Expect = 6e-09
Identities = 22/184 (11%), Positives = 44/184 (23%), Gaps = 52/184 (28%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
T + L N++ K+ D LP L+ +DL N + P
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF--------------------PT 530
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI-GFLSNFTF 236
L R D N+
Sbjct: 531 QPLNSSTL------------KGFGIRNQR---------------DAQGNRTLREWPE-GI 562
Query: 237 SPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296
+ L+QL + N ++ ++ ++ ++ + N I +
Sbjct: 563 TLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619
Query: 297 GNPL 300
+
Sbjct: 620 YDKT 623
Score = 56.6 bits (137), Expect = 1e-08
Identities = 25/229 (10%), Positives = 58/229 (25%), Gaps = 35/229 (15%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEI-GKIKSDGLFGRLPNLIKL 145
G + + + + + T L L G++ G+L L L
Sbjct: 53 GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA--IGQLTELEVL 110
Query: 146 DLRRNQVTGIEDNAFEGE------NDQGCLGDNYCP-------PKCTCT-VRVLFYDGRA 191
L + E ++Q + P+ + + +
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170
Query: 192 GECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK 251
+ I + + +N I F+S L+KL Q + +
Sbjct: 171 QQKSIKKSSRIT------------LKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSP 217
Query: 252 LQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ ++ + + +L +T + + P
Sbjct: 218 FVAENICEAWENENSEYAQQYKT----EDL-KWDNLKDLTDVEVYNCPN 261
Score = 55.0 bits (133), Expect = 4e-08
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 222 DLSNNQI-------GFLSNFT-FSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLH 272
+++ N+ K+ + + YN L+ +L +K L ++
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338
Query: 273 GNDISMIPEGAFADLHAITHLAIGGNPL 300
N + AF + L + N +
Sbjct: 339 YNQLEGKLP-AFGSEIKLASLNLAYNQI 365
Score = 54.3 bits (131), Expect = 9e-08
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+ +N + +S L + N ID + + L + I
Sbjct: 572 QIGSND---IRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628
Query: 282 GAFADL 287
D+
Sbjct: 629 CDALDI 634
Score = 53.9 bits (130), Expect = 1e-07
Identities = 23/216 (10%), Positives = 54/216 (25%), Gaps = 62/216 (28%)
Query: 102 SQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNA 159
S K I K + T++ N I + RL L + + +
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNSPFVAEN--- 222
Query: 160 FEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM 219
I + + +
Sbjct: 223 ------------------------------------ICEAWENENSEYAQQYKTEDLK-- 244
Query: 220 YRDLSNNQIGFLSNFTFS---P-----LSKLSQLILSYNKLQCIDRDA--------LAGL 263
+ +L + + N P L ++ + ++ N+ ++
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 264 KSLRIISLHGNDISMIP-EGAFADLHAITHLAIGGN 298
+ ++II + N++ P E + + + L N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340
Score = 41.6 bits (98), Expect = 8e-04
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
+ + N + + ++ L L+ NQ+ G
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345
Score = 31.9 bits (73), Expect = 0.60
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 106 LKEIPKDIP----LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
L+E P+ I L T+L + N+I K+ ++ + PN+ LD++ N I
Sbjct: 555 LREWPEGITLCPSL--TQLQIGSNDIRKV-NEKI---TPNISVLDIKDNPNISI 602
Score = 28.9 bits (65), Expect = 6.0
Identities = 7/84 (8%), Positives = 25/84 (29%), Gaps = 20/84 (23%)
Query: 91 GCSCDGTRVDCSQRGLKEIPKDIPLYT--TELILNDN--------EIGKIKS-------- 132
+ T++ + + K + T + + ++ E + ++
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239
Query: 133 --DGLFGRLPNLIKLDLRRNQVTG 154
D + L +L +++
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLT 263
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 79.3 bits (196), Expect = 2e-16
Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 46/207 (22%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
T + G+ I + L L DN+I + L + +L+L N +
Sbjct: 44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKN 99
Query: 155 IEDNAFEGENDQGCLGDNYCPPKCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGN 213
+ ++ L +L S++I +
Sbjct: 100 VS-------------------AIAGLQSIKTL-------------DLTSTQITDVTPLAG 127
Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
+ L NQI +S + L+ L L + ++ + LA L L +
Sbjct: 128 LS-NLQVLYLDLNQITNISPL--AGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD 182
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
N IS I A L + + + N +
Sbjct: 183 NKISDIS--PLASLPNLIEVHLKNNQI 207
Score = 58.9 bits (143), Expect = 1e-09
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+ + L+ L L L N++ + L L + + L GN + +
Sbjct: 47 SAFGTGVTTIEGV--QYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKNVS- 101
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLS 310
A A L +I L + + LA LS
Sbjct: 102 -AIAGLQSIKTLDLTSTQITDVTPLAGLS 129
Score = 41.6 bits (98), Expect = 4e-04
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
++ + + + L T L + I+ L NLI L+L+ NQ+T +
Sbjct: 22 IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQITDL 78
Query: 156 E 156
Sbjct: 79 A 79
Score = 39.3 bits (92), Expect = 0.002
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L NNQI +S + S L + L+ + L + G + I
Sbjct: 201 HLKNNQISDVSPL--ANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAP 256
Query: 282 GAFAD 286
+D
Sbjct: 257 ATISD 261
Score = 39.3 bits (92), Expect = 0.003
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T L +DN+I I LPNLI++ L+ NQ++ +
Sbjct: 176 TTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS 211
Score = 38.5 bits (90), Expect = 0.005
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
E+ L +N+I + NL + L +T
Sbjct: 198 IEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPVFYNN 238
Score = 37.4 bits (87), Expect = 0.010
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 121 ILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
I I I D L N IK+ ++ VT
Sbjct: 3 ITQPTAINVIFPDP---ALANAIKIAAGKSNVTDTV 35
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 75.8 bits (187), Expect = 3e-16
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
CPS CSC GT + C+ +GL +P IP T L L N++ + G+F +L L KL L
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSL 59
Query: 148 RRNQVTGIEDNAF 160
+NQ+ + D F
Sbjct: 60 SQNQIQSLPDGVF 72
Score = 66.9 bits (164), Expect = 4e-13
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
LS NQI L + F L+KL+ L L NKLQ + L L+ ++L N + +P+
Sbjct: 58 SLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117
Query: 282 GAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR-DYVEPGIARC 325
G F L ++ + + NP C C + +LS W+ + E G A+C
Sbjct: 118 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 163
Score = 37.6 bits (88), Expect = 0.004
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L L NKLQ + L L +SL N I +P+G F L +T L + N L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 72.9 bits (179), Expect = 1e-15
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 265 SLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVK--RDYVEPGI 322
+ L GN+++ +P G L A+ +G NP CDC L L W+ +
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRD 91
Query: 323 ARCTEPASMRDKLLLTAPASSFQC 346
RC P ++R +LL +
Sbjct: 92 LRCVAPPALRGRLLPYLAEDELRA 115
Score = 66.8 bits (163), Expect = 1e-13
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 88 CPSGCSCDGTRVDCSQRGL--KEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
CP+ CSC GT VDC +RGL +P P+ TTEL+L N + + GL LP L
Sbjct: 2 CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTAL-PPGLLDALPALRTA 60
Query: 146 DLRRNQ 151
L N
Sbjct: 61 HLGANP 66
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 74.7 bits (184), Expect = 2e-15
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
ACPS CSC GT VDC + +P IP L L+DN+I K+ G+F L NL +L
Sbjct: 12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKL-EPGVFDSLINLKELY 70
Query: 147 LRRNQVTGIEDNAF 160
L NQ+ + F
Sbjct: 71 LGSNQLGALPVGVF 84
Score = 60.9 bits (148), Expect = 1e-10
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR--DALAGLKSLRIISLHGNDISMI 279
DL NQ+ L + F L L +L + NKL + R + L L L +L N + I
Sbjct: 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHL---ALDQNQLKSI 150
Query: 280 PEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR 315
P GAF L ++TH + GNP C+C + +L WV
Sbjct: 151 PHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVAD 187
Score = 55.9 bits (135), Expect = 6e-09
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 15/127 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
CP +C+C G +C S+ R + P + L +NQI L
Sbjct: 13 CPSQCSC-------SGTTVDC-------RSK-RHASVPAGIPTNAQILYLHDNQITKLEP 57
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
F L L +L L N+L + L L ++ L N ++++P F L + L
Sbjct: 58 GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117
Query: 294 AIGGNPL 300
+ N L
Sbjct: 118 FMCCNKL 124
Score = 28.5 bits (64), Expect = 5.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 118 TELILNDNEIGKIKS--DGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
EL + N K+ G RL +L L L +NQ+ I AF
Sbjct: 115 KELFMCCN---KLTELPRG-IERLTHLTHLALDQNQLKSIPHGAF 155
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 74.1 bits (183), Expect = 2e-14
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++ +NQI +S + LS+L+ L L+ N+L D + + GL +L + L N I+ I
Sbjct: 271 NVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR- 327
Query: 282 GAFADLHAITHLAIGGNPL 300
A L + +
Sbjct: 328 -PLASLSKMDSADFANQVI 345
Score = 70.3 bits (173), Expect = 3e-13
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L+ NQI +S + L+ L N++ I +A + L + + N I+ +
Sbjct: 183 SLNYNQIEDISPL--ASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLS- 237
Query: 282 GAFADLHAITHLAIGGNPL 300
A+L +T L IG N +
Sbjct: 238 -PLANLSQLTWLEIGTNQI 255
Score = 69.5 bits (171), Expect = 5e-13
Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 60/193 (31%)
Query: 118 TELILNDNE-IGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
L L N + + + L L + ++V +
Sbjct: 135 YSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVT--PIAN-------------- 175
Query: 177 KCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN--------NQ 227
T + L L ++I + + L++ NQ
Sbjct: 176 ---LTDLYSL-------------SLNYNQIEDISPLAS---------LTSLHYFTAYVNQ 210
Query: 228 IGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADL 287
I ++ + +++L+ L + NK+ + LA L L + + N IS I A DL
Sbjct: 211 ITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDIN--AVKDL 264
Query: 288 HAITHLAIGGNPL 300
+ L +G N +
Sbjct: 265 TKLKMLNVGSNQI 277
Score = 68.0 bits (167), Expect = 2e-12
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L+ NQI +S S L KL+ L + NK+ I AL L +LR + L+ ++IS I
Sbjct: 72 NLNGNQITDISPL--SNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDIS- 126
Query: 282 GAFADLHAITHLAIGGNPL 300
A+L + L +G N
Sbjct: 127 -PLANLTKMYSLNLGANHN 144
Score = 65.6 bits (161), Expect = 9e-12
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L+ + I +S + L+K+ L L N D L+ + L +++ + + +
Sbjct: 116 YLNEDNISDISPL--ANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVT- 171
Query: 282 GAFADLHAITHLAIGGNPL 300
A+L + L++ N +
Sbjct: 172 -PIANLTDLYSLSLNYNQI 189
Score = 65.6 bits (161), Expect = 1e-11
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+ NN+I LS + LS+L+ L + N++ I+ A+ L L+++++ N IS I
Sbjct: 227 KIGNNKITDLSPL--ANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS- 281
Query: 282 GAFADLHAITHLAIGGNPL 300
+L + L + N L
Sbjct: 282 -VLNNLSQLNSLFLNNNQL 299
Score = 64.9 bits (159), Expect = 2e-11
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++ ++ + L+ L L L+ N++ I L+ L L + + N I+ I
Sbjct: 50 VVAGEKVASIQGI--EYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS- 104
Query: 282 GAFADLHAITHLAIGGNPL 300
A +L + L + + +
Sbjct: 105 -ALQNLTNLRELYLNEDNI 122
Score = 64.1 bits (157), Expect = 3e-11
Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 44/196 (22%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG-ENDQG-CLGDNY-- 173
T+L++ ++ I+ L NL L+L NQ+T I +G N
Sbjct: 47 TKLVVAGEKVASIQG---IEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKIT 101
Query: 174 -CPPKCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
T +R L L I + N L+ L
Sbjct: 102 DISALQNLTNLREL-------------YLNEDNISDISPLAN---------LTKMYSLNL 139
Query: 232 S-NFTFSPLSKLSQLI------LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAF 284
N S LS LS + ++ +K++ + +A L L +SL+ N I I
Sbjct: 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDIS--PL 195
Query: 285 ADLHAITHLAIGGNPL 300
A L ++ + N +
Sbjct: 196 ASLTSLHYFTAYVNQI 211
Score = 57.2 bits (139), Expect = 6e-09
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
I + F + L++ + +L + + L+S+ + + G ++ I
Sbjct: 6 ATLPAPINQI--FPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQ- 60
Query: 282 GAFADLHAITHLAIGGNPL 300
L + +L + GN +
Sbjct: 61 -GIEYLTNLEYLNLNGNQI 78
Score = 56.4 bits (137), Expect = 9e-09
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
L+NNQ+G L+ L+ L LS N + I LA L + I
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVIK 346
Score = 54.1 bits (131), Expect = 5e-08
Identities = 26/202 (12%), Positives = 60/202 (29%), Gaps = 53/202 (26%)
Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
+ +I D L +L + + + L ++ KL + +V I+
Sbjct: 12 INQIFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASIQG------- 61
Query: 165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLS 224
+ Y + L L ++I + N L
Sbjct: 62 ----IE--YLT-----NLEYL-------------NLNGNQITDISPLSN---------LV 88
Query: 225 NNQIGFLSNFTFSPLSKLSQLI------LSYNKLQCIDRDALAGLKSLRIISLHGNDISM 278
++ + +S L L L+ + + I LA L + ++L N
Sbjct: 89 KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLS 146
Query: 279 IPEGAFADLHAITHLAIGGNPL 300
+++ + +L + + +
Sbjct: 147 DLS-PLSNMTGLNYLTVTESKV 167
Score = 47.2 bits (113), Expect = 9e-06
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
T++ + + I I T L LN N+I I L L L + N++T
Sbjct: 47 TKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD 102
Query: 155 IE 156
I
Sbjct: 103 IS 104
Score = 45.2 bits (108), Expect = 4e-05
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L + N+I I L L L L NQ+ + G
Sbjct: 268 KMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGG 309
Score = 44.1 bits (105), Expect = 9e-05
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T L + N+I I + L L L++ NQ++ I
Sbjct: 246 TWLEIGTNQISDINA---VKDLTKLKMLNVGSNQISDIS 281
Score = 43.7 bits (104), Expect = 1e-04
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
L I +I D L I+ L++ VT +
Sbjct: 3 ATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVV 38
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV 152
++ + + +I PL T L + N+I I + L NL +L L + +
Sbjct: 69 EYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKITDISA---LQNLTNLRELYLNEDNI 122
Query: 153 TGIE 156
+ I
Sbjct: 123 SDIS 126
Score = 42.5 bits (101), Expect = 3e-04
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
L LN+N++G + G L NL L L +N +T I
Sbjct: 290 NSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIR 327
Score = 41.8 bits (99), Expect = 5e-04
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV 152
T + + +I L EL LN++ I I L + L+L N
Sbjct: 91 TNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHN 144
Query: 153 TGI 155
Sbjct: 145 LSD 147
Score = 36.8 bits (86), Expect = 0.018
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
T L L+ N I I+ L + D +
Sbjct: 314 TTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 72.8 bits (179), Expect = 3e-14
Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDH 493
C+S C +N +C D I Y C C+PG++G C+ C E CL
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF-CLPG 61
Query: 494 FSHYTCECTPGFSGVNCTVNVDDCVNHMC----QNGGTCVDG 531
YTC C G+ C
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ 103
Score = 67.4 bits (165), Expect = 2e-12
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 512 VNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN 571
C++ C + G+C D I YTC C + G CE+A + C
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELA---------KNECHPERTDG 53
Query: 572 GICFQPQGSNDYLCKCAPGYS 592
F G Y C CA GY
Sbjct: 54 CQHFCLPGQESYTCSCAQGYR 74
Score = 63.6 bits (155), Expect = 4e-11
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG-TCVDGINDYTCKCE 540
PC + C D YTC C+PG+ G NC + ++C C+ G YTC C
Sbjct: 11 QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCA 70
Query: 541 GDFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGIC 574
+
Sbjct: 71 QGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
Score = 58.6 bits (142), Expect = 2e-09
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
+ C PC + G C+ Y C C+PGY G +CE + C+ L +
Sbjct: 6 SPCISQPCLHNGSCQDSI-WGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQES 64
Query: 419 FNCECAPGYTGDRCEINIDDCLSHKC 444
+ C CA GY C
Sbjct: 65 YTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 55.9 bits (135), Expect = 1e-08
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
+ G+C D I YTC C + G CE+A + C F G Y
Sbjct: 15 HNGSCQDSIWGYTCTCSPGYEGSNCELA---------KNECHPERTDGCQHFCLPGQESY 65
Query: 61 LCKCAPGYS 69
C CA GY
Sbjct: 66 TCSCAQGYR 74
Score = 30.1 bits (68), Expect = 1.9
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 558 YPQTSPCQHHDCKN-GICFQPQGSNDYLCKCAPGYSGK 594
Y SPC C + G C Y C C+PGY G
Sbjct: 2 YKGGSPCISQPCLHNGSC--QDSIWGYTCTCSPGYEGS 37
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 69.3 bits (170), Expect = 4e-14
Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 7/148 (4%)
Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
++ C SG C G + C+C P + + + D S C +
Sbjct: 3 VNECLDPTTCISGNCVNTP-GSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGD 61
Query: 457 YECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVN--- 513
C G PC C GF TV
Sbjct: 62 TACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILED 121
Query: 514 VDDCV--NHMCQNGGTCVDGINDYTCKC 539
+D+C +CQ G C++ + C+C
Sbjct: 122 IDECQELPGLCQG-GKCINTFGSFQCRC 148
Score = 65.5 bits (160), Expect = 1e-12
Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 7/133 (5%)
Query: 380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGY--TGDRCEINID 437
Y C C P + C + G C G + C ++
Sbjct: 24 YICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGD-NGDTACSNEIGVGVSKASCCCSLG 82
Query: 438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDHF 494
CE C GF+ C C+ G +C++ F
Sbjct: 83 KAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGG-KCINTF 141
Query: 495 SHYTCECTPGFSG 507
+ C C G+
Sbjct: 142 GSFQCRCPTGYYL 154
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/117 (15%), Positives = 27/117 (23%), Gaps = 19/117 (16%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC-- 539
C +G C++ Y C+C P F V D + C D C
Sbjct: 10 TTCISG-NCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEI 68
Query: 540 --EGDFVGKFCEIAPFVAMMYPQTSPCQHHDCK-NGICFQPQGSNDYLCKCAPGYSG 593
C + C+ + LC G+
Sbjct: 69 GVGVSKASCCCSL-----------GKAWGTPCEMCPAVNTSEYK--ILCPGGEGFRP 112
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 66.0 bits (161), Expect = 1e-13
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 376 PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCK-LLEEGRFNCECAPGYTGDRCEI 434
R C C G H + +C C N GTC+ L F C+C G+ G CEI
Sbjct: 28 SNRVEYCWCNSGRAQCHSV-PVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Query: 435 NI 436
+
Sbjct: 87 DT 88
Score = 65.6 bits (160), Expect = 1e-13
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 456 AYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVD 515
+Y+ C Q + P R C C G + +V V
Sbjct: 1 SYQVICRDEKTQMIYQQHQSWL----RPVLRSNRV------EYCWCNSGRAQ-CHSVPVK 49
Query: 516 DCVNHMCQNGGTCVDGI--NDYTCKCEGDFVGKFCEI 550
C C NGGTC + +D+ C+C F GK CEI
Sbjct: 50 SCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 62.5 bits (152), Expect = 2e-12
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 12/97 (12%)
Query: 380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDC 439
YQ C + + P S C C G + + C
Sbjct: 2 YQVICRDEKTQMIYQ--QHQSWLRPVLRSN-------RVEYCWCNSGRAQ-CHSVPVKSC 51
Query: 440 LSHKCENNATCVDLIQA--YECRCAPGFQGEFCQTKT 474
+C N TC + + C+C GF G+ C+ T
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT 88
Score = 35.5 bits (82), Expect = 0.005
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 4 TCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQGSNDYLC 62
+ C C C C N G C Q +D++C
Sbjct: 24 PVLRSNRVEYCWCNSGRAQCHSV----------PVKSCSEPRCFNGGTCQQALYFSDFVC 73
Query: 63 KCAPGYSG 70
+C G++G
Sbjct: 74 QCPEGFAG 81
Score = 34.8 bits (80), Expect = 0.009
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1 NGGTCVDGI--NDYTCKCEGDFVGKFCEI 27
NGGTC + +D+ C+C F GK CEI
Sbjct: 58 NGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 67.4 bits (165), Expect = 1e-13
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
ID C +PC N G CK G F CEC+ T D + + TC +
Sbjct: 4 IDECESSPCIN-GVCKNSP-GSFICECSSESTLDPTKTICIET------IKGTCWQTVID 55
Query: 457 YECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT--VNV 514
C Q + A +PC C G+S + T ++
Sbjct: 56 GRCEININGATLKSQCCSSLGAAWGSPCTLCQ--------VDPICGKGYSRIKGTQCEDI 107
Query: 515 DDCV--NHMCQNGGTCVDGINDYTCKC 539
D+C +C+N G CV+ + C+C
Sbjct: 108 DECEVFPGVCKN-GLCVNTRGSFKCQC 133
Score = 51.2 bits (123), Expect = 6e-08
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 17/113 (15%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
C K C + + + C + A +G+PC
Sbjct: 41 CIETIKGTCWQTVID-----GRCEININGATLKSQCCSSLGAAWGSPC---------TLC 86
Query: 418 RFNCECAPGYTGDRCE--INIDDCLSHKCE-NNATCVDLIQAYECRCAPGFQG 467
+ + C GY+ + +ID+C N CV+ +++C+C G
Sbjct: 87 QVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/114 (14%), Positives = 26/114 (22%), Gaps = 23/114 (20%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC 539
E +PC NG C + + CEC+ + + + C
Sbjct: 8 ESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID----GRCEINI 62
Query: 540 EGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
G + C + C C GYS
Sbjct: 63 NGATLKSQCCSSL---------GAAWGSPCTLC---------QVDPICGKGYSR 98
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 72.0 bits (176), Expect = 2e-13
Identities = 37/226 (16%), Positives = 59/226 (26%), Gaps = 31/226 (13%)
Query: 397 IDACYGNPCRNSGTCKLLEEGRFNC-ECAPGYTG--------DRCEINIDDCLSHKCENN 447
D C NPC C +G ++C C G+ G D C + D C
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDIC--FSTSKV 60
Query: 448 ATCVDLIQAYEC-RCAPGFQGEFCQTKTPF--------------CAGEYNPCRNGARCLD 492
CV+ + C C P ++G C + + C A C+
Sbjct: 61 PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIY 120
Query: 493 HFSH----YTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFC 548
Y CEC G++G D ++ C + K +
Sbjct: 121 LGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSG 180
Query: 549 EIAPFVAMMYPQTSPCQHHD-CKNGICFQPQGSNDYLCKCAPGYSG 593
+ + +D + N G
Sbjct: 181 QEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVG 226
Score = 39.2 bits (91), Expect = 0.004
Identities = 32/191 (16%), Positives = 46/191 (24%), Gaps = 28/191 (14%)
Query: 380 YQC-RCTPGYHG---------------QHCEFMIDAC--YGNPCRNSGTCKLLEE---GR 418
+ C C P Y G Q CE + C + C C L
Sbjct: 70 FHCLPCPPRYRGNQPVGVGLEAAKTEKQVCE-PENPCKDKTHNCHKHAECIYLGHFSDPM 128
Query: 419 FNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCA 478
+ CEC GY GD D L N C + + Q
Sbjct: 129 YKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKD- 187
Query: 479 GEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCK 538
+ D + C F+ + D+ + C N
Sbjct: 188 -GIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCD----NCPYVHNPAQID 242
Query: 539 CEGDFVGKFCE 549
+ + G C
Sbjct: 243 TDNNGEGDACS 253
Score = 37.7 bits (87), Expect = 0.013
Identities = 24/161 (14%), Positives = 38/161 (23%), Gaps = 3/161 (1%)
Query: 382 CRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLS 441
G + + DAC + + T + Y D D+C
Sbjct: 175 HLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNC-- 232
Query: 442 HKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCEC 501
N A C+ G+ + C YN D + C
Sbjct: 233 PYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTD-QRDTDGDGVGDHCDNC 291
Query: 502 TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGD 542
+ V+ D + N DG + C
Sbjct: 292 PLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYI 332
Score = 35.0 bits (80), Expect = 0.069
Identities = 25/186 (13%), Positives = 44/186 (23%), Gaps = 8/186 (4%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
+AC + E + Y D C P ++ +
Sbjct: 190 GDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNC---PYVHNPAQIDTDNN 246
Query: 418 RFNCECAPGYTGDRCEINIDDC-LSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPF 476
C+ GD D+C + + T D + + C + QT
Sbjct: 247 GEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPD--QTDVDN 304
Query: 477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYT 536
N D + C + + D + + DG+ D
Sbjct: 305 DLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGD--ACDPDDDNDGVPDDR 362
Query: 537 CKCEGD 542
C
Sbjct: 363 DNCRLV 368
Score = 33.8 bits (77), Expect = 0.16
Identities = 25/188 (13%), Positives = 46/188 (24%), Gaps = 16/188 (8%)
Query: 380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDC 439
Y+C C GY G D+ + C + + + + + D
Sbjct: 129 YKCECQTGYAGDGLICGEDSDLDGWPNLNLVC-ATNATYHCIKDNCPHLPNSGQEDFDKD 187
Query: 440 LSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFS---H 496
++ D + + C F + C +
Sbjct: 188 GIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNG 247
Query: 497 YTCECTPGFSGVNCTVNVDDCVNHMCQNGG-TCVDGI-----------NDYTCKCEGDFV 544
C+ G + D+C + T DG+ N + D V
Sbjct: 248 EGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLV 307
Query: 545 GKFCEIAP 552
G C+
Sbjct: 308 GDQCDNNE 315
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 67.8 bits (166), Expect = 1e-12
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L+ N++ + + L L L L NK++ + +L LK L+ +SL N IS I
Sbjct: 74 FLNGNKLTDIKPL--ANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN- 128
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLS 310
L + L +G N + L+ L+
Sbjct: 129 -GLVHLPQLESLYLGNNKITDITVLSRLT 156
Score = 63.9 bits (156), Expect = 2e-11
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L +N I ++ L +L L L NK+ I L+ L L +SL N IS I
Sbjct: 118 SLEHNGISDINGL--VHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV- 172
Query: 282 GAFADLHAITHLAIGGNPL 300
A L + +L + N +
Sbjct: 173 -PLAGLTKLQNLYLSKNHI 190
Score = 60.8 bits (148), Expect = 2e-10
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+N+ I + L +++L L+ NKL I LA LK+L + L N + +
Sbjct: 52 IANNSDIKSVQGI--QYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS- 106
Query: 282 GAFADLHAITHLAIGGNPL 300
+ DL + L++ N +
Sbjct: 107 -SLKDLKKLKSLSLEHNGI 124
Score = 58.5 bits (142), Expect = 1e-09
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L +NQI + + L+KL L LS N + + ALAGLK+L ++ L + P
Sbjct: 162 SLEDNQISDIVPL--AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 217
Query: 282 GAFADLHAITHL 293
++L +
Sbjct: 218 NHQSNLVVPNTV 229
Score = 55.4 bits (134), Expect = 1e-08
Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L + T + L+ + Q+I + + ++ + + L ++ + L+GN ++ I
Sbjct: 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP 85
Query: 282 GAFADLHAITHLAIGGNPL 300
A+L + L + N +
Sbjct: 86 --LANLKNLGWLFLDENKV 102
Score = 43.9 bits (104), Expect = 9e-05
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
+ + ++ + + L + ++I N+++I ++ LPN+ KL L N++T I
Sbjct: 27 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDI 83
Query: 156 ED 157
+
Sbjct: 84 KP 85
Score = 41.2 bits (97), Expect = 5e-04
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
L L +N+I I RL L L L NQ++ I
Sbjct: 137 ESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVP 173
Score = 40.8 bits (96), Expect = 8e-04
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
T++ + L +I L L L++N++ + S L L L L N ++ I
Sbjct: 71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGISDI 127
Query: 156 E 156
Sbjct: 128 N 128
Score = 40.0 bits (94), Expect = 0.001
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
L L N I I LP L L L N++T I
Sbjct: 115 KSLSLEHNGISDING---LVHLPQLESLYLGNNKITDIT 150
Score = 39.7 bits (93), Expect = 0.002
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
L L+ N I +++ L NL L+L + N
Sbjct: 181 QNLYLSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQS 221
Score = 36.6 bits (85), Expect = 0.017
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
L L DN+I I L L L L +N ++ +
Sbjct: 159 DTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA 195
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 69.4 bits (169), Expect = 1e-12
Identities = 40/207 (19%), Positives = 66/207 (31%), Gaps = 68/207 (32%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
++ + +K + + I T+L LN N++ IK L NL L L N++
Sbjct: 46 DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD 101
Query: 155 IEDNAFEGENDQGCLGDNYCPPKCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGN 213
+ ++ L L + I
Sbjct: 102 LS-------------------SLKDLKKLKSL-------------SLEHNGI-------- 121
Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
D++ L + L +L L L NK+ I L+ L L +SL
Sbjct: 122 -------SDING-----LVH-----LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
N IS I A L + +L + N +
Sbjct: 163 NQISDIV--PLAGLTKLQNLYLSKNHI 187
Score = 68.2 bits (166), Expect = 4e-12
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L+ N++ + + L L L L NK++ + +L LK L+ +SL N IS I
Sbjct: 71 FLNGNKLTDIKPL--TNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDIN- 125
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLS 310
L + L +G N + L+ L+
Sbjct: 126 -GLVHLPQLESLYLGNNKITDITVLSRLT 153
Score = 67.8 bits (165), Expect = 5e-12
Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 63/183 (34%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
E I I +I D IK +L++ VT
Sbjct: 2 GETITVSTPIKQIFPDD---AFAETIKDNLKKKSVTDAV------------------TQN 40
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
++ + +S I + + +
Sbjct: 41 ELNSIDQI-------------IANNSDI---------------KSVQG-----IQYLP-- 65
Query: 238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGG 297
+++L L+ NKL I L LK+L + L N I + + DL + L++
Sbjct: 66 ---NVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118
Query: 298 NPL 300
N +
Sbjct: 119 NGI 121
Score = 56.7 bits (136), Expect = 1e-08
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L +NQI + + L+KL L LS N + + ALAGLK+L ++ L + P
Sbjct: 159 SLEDNQISDIVPL--AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214
Query: 282 GAFADLHAITHL 293
++L +
Sbjct: 215 NHQSNLVVPNTV 226
Score = 37.8 bits (87), Expect = 0.010
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
L L DN+I I L L L L +N ++ +
Sbjct: 156 DTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR 191
Score = 36.2 bits (83), Expect = 0.030
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
L L+ N I +++ L NL L+L + N
Sbjct: 178 QNLYLSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQS 218
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 65.8 bits (161), Expect = 2e-12
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++N + S LS L +L + + L+GL SL ++ + +
Sbjct: 72 TINNIHATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
Query: 282 GAFADLHAITHLAIGGNPL 300
L + + + N
Sbjct: 130 TKINTLPKVNSIDLSYNGA 148
Score = 61.9 bits (151), Expect = 3e-11
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L+N + L+ + + L ++ + ++GL +L + + G D++
Sbjct: 50 TLANINVTDLTGIEY--AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKI 105
Query: 282 GAFADLHAITHLAIGGNPL 300
+ L ++T L I +
Sbjct: 106 PNLSGLTSLTLLDISHSAH 124
Score = 59.2 bits (144), Expect = 3e-10
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D+S++ + L K++ + LSYN D L L L+ +++ + +
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHDYR- 175
Query: 282 GAFADLHAITHLAIGGNPL 300
D + L +
Sbjct: 176 -GIEDFPKLNQLYAFSQTI 193
Score = 41.9 bits (99), Expect = 2e-04
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
L + + + + P L +L + G +
Sbjct: 162 KSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQTIGGKK 197
Score = 39.9 bits (94), Expect = 7e-04
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T + L + + + N+ L + T
Sbjct: 47 TYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYN 82
Score = 39.2 bits (92), Expect = 0.001
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
L + ++ K L G L +L LD+ +
Sbjct: 91 ERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINT 134
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 118 TELILNDN-EIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
+ L+ N I I LP L L+++ + V
Sbjct: 139 NSIDLSYNGAITDIMP---LKTLPELKSLNIQFDGVHDYR 175
Score = 35.3 bits (82), Expect = 0.026
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITH 292
N S +L + I + L + +L +++ + G H I
Sbjct: 16 NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVTDL-TG-IEYAHNIKD 70
Query: 293 LAIGGNPL 300
L I
Sbjct: 71 LTINNIHA 78
Score = 33.4 bits (77), Expect = 0.11
Identities = 4/34 (11%), Positives = 10/34 (29%), Gaps = 2/34 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255
++ + + KL+QL +
Sbjct: 165 NIQFDGVHDYRGI--EDFPKLNQLYAFSQTIGGK 196
Score = 33.4 bits (77), Expect = 0.14
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN-QVTGIE 156
T L ++ + + LP + +DL N +T I
Sbjct: 115 TLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM 153
Score = 30.7 bits (70), Expect = 0.95
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 120 LILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
+L + I ++ +L + L VT +
Sbjct: 28 GLLGQSSTANIT----EAQMNSLTYITLANINVTDLT 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 68.1 bits (167), Expect = 3e-12
Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 71/199 (35%)
Query: 117 TTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
+ I D I +I +D L +K L + VT
Sbjct: 4 GSATITQDTPINQIFTDT---ALAEKMKTVLGKTNVTDT-------------------VS 41
Query: 177 KCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFT 235
+ V L + I + + + +L+N T
Sbjct: 42 QTDLDQVTTL-------------QADRLGI---------------KSIDG--VEYLNNLT 71
Query: 236 F-----------SPLSKLSQLI---LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+PL L++L+ ++ N++ I LA L +L ++L N I+ I
Sbjct: 72 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDID- 128
Query: 282 GAFADLHAITHLAIGGNPL 300
+L + L + N +
Sbjct: 129 -PLKNLTNLNRLELSSNTI 146
Score = 66.9 bits (164), Expect = 6e-12
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D+S+N++ +S + L+ L LI + N++ I L L +L +SL+GN + I
Sbjct: 183 DISSNKVSDISVL--AKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIG- 237
Query: 282 GAFADLHAITHLAIGGNPL 300
A L +T L + N +
Sbjct: 238 -TLASLTNLTDLDLANNQI 255
Score = 65.4 bits (160), Expect = 2e-11
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L N I +S S L+KL +L NK+ + +LA L ++ +S N IS +
Sbjct: 315 TLYFNNISDISPV--SSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 370
Query: 282 GAFADLHAITHLAIGGNPL 300
A+L IT L +
Sbjct: 371 --LANLTRITQLGLNDQAW 387
Score = 64.2 bits (157), Expect = 5e-11
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DL+NNQI L+ S L+KL++L L N++ I LAGL +L + L+ N + I
Sbjct: 249 DLANNQISNLAPL--SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP 304
Query: 282 GAFADLHAITHLAIGGNPL 300
++L +T+L + N +
Sbjct: 305 --ISNLKNLTYLTLYFNNI 321
Score = 63.8 bits (156), Expect = 6e-11
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L NQI +S + L+ L+ L L+ N+L+ I ++ LK+L ++L+ N+IS I
Sbjct: 271 KLGANQISNISPL--AGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP 326
Query: 282 GAFADLHAITHLAIGGNPL 300
+ L + L N +
Sbjct: 327 --VSSLTKLQRLFFYNNKV 343
Score = 63.4 bits (155), Expect = 9e-11
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+NNQI ++ L+ L +L L+ N+L+ I LA L +L + L N IS +
Sbjct: 205 IATNNQISDITPL--GILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA- 259
Query: 282 GAFADLHAITHLAIGGNPL 300
+ L +T L +G N +
Sbjct: 260 -PLSGLTKLTELKLGANQI 277
Score = 62.3 bits (152), Expect = 2e-10
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++NNQI ++ + L+ L+ L L N++ ID L L +L + L N IS I
Sbjct: 96 LMNNNQIADITPL--ANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS- 150
Query: 282 GAFADLHAITHLAIGGN 298
A + L ++ L+ G
Sbjct: 151 -ALSGLTSLQQLSFGNQ 166
Score = 62.3 bits (152), Expect = 2e-10
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
N + L+ L +L +S NK+ I LA L +L + N IS I
Sbjct: 162 SFGNQVTDLKP---LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT- 215
Query: 282 GAFADLHAITHLAIGGNPL 300
L + L++ GN L
Sbjct: 216 -PLGILTNLDELSLNGNQL 233
Score = 58.8 bits (143), Expect = 2e-09
Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 71/208 (34%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV 152
T + + G+K I + T++ ++N++ I L L+ + + NQ+
Sbjct: 49 TTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQI 102
Query: 153 TGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVG 212
I L T + L LF+++I
Sbjct: 103 ADITP-----------LA------NLT-NLTGLT-------------LFNNQI------- 124
Query: 213 NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
D+ + L+N L++L LS N + I AL+GL SL+ +S
Sbjct: 125 --------TDIDP--LKNLTN-----LNRLE---LSSNTISDI--SALSGLTSLQQLSFG 164
Query: 273 GNDISMIPEGAFADLHAITHLAIGGNPL 300
+ P A+L + L I N +
Sbjct: 165 NQVTDLKP---LANLTTLERLDISSNKV 189
Score = 57.7 bits (140), Expect = 6e-09
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+LS+N I +S S L+ L QL D LA L +L + + N +S I
Sbjct: 140 ELSSNTISDISAL--SGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSDIS- 193
Query: 282 GAFADLHAITHLAIGGNPL 300
A L + L N +
Sbjct: 194 -VLAKLTNLESLIATNNQI 211
Score = 49.2 bits (118), Expect = 3e-06
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+NQI L+ + L++++QL L+ + A + + ++I
Sbjct: 359 SAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN--VTGALIAP 414
Query: 282 GAFADLHAITHLAIGGNPL 300
+D + T I N
Sbjct: 415 ATISDGGSYTEPDITWNLP 433
Score = 48.4 bits (116), Expect = 5e-06
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
+ + + + L T L + I I L NL +++ NQ+T I
Sbjct: 27 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLTDI 83
Query: 156 E 156
Sbjct: 84 T 84
Score = 45.0 bits (107), Expect = 5e-05
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
EL LN N++ I + L NL LDL NQ++ +
Sbjct: 224 DELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAP 260
Score = 43.0 bits (102), Expect = 2e-04
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
L +N++ + S L N+ L NQ++ +
Sbjct: 334 QRLFFYNNKVSDVSS---LANLTNINWLSAGHNQISDLT 369
Score = 42.3 bits (100), Expect = 4e-04
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
L ++ N++ I +L NL L NQ++ I
Sbjct: 180 ERLDISSNKVSDISV---LAKLTNLESLIATNNQISDIT 215
Score = 41.9 bits (99), Expect = 5e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
T+L L +N+I + L L +L L NQ++ I
Sbjct: 246 TDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 282
Score = 41.5 bits (98), Expect = 7e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T L LN+N++ I L NL L L N ++ I
Sbjct: 290 TNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDIS 325
Score = 41.1 bits (97), Expect = 8e-04
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
LI +N+I I G L NL +L L NQ+ I
Sbjct: 202 ESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG 237
Score = 41.1 bits (97), Expect = 9e-04
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV 152
T +D + + + PL TEL L N+I I L L L+L NQ+
Sbjct: 246 TDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQL 299
Query: 153 TGIE 156
I
Sbjct: 300 EDIS 303
Score = 39.6 bits (93), Expect = 0.003
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T L L N I I L L +L N+V+ +
Sbjct: 312 TYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVS 347
Score = 38.0 bits (89), Expect = 0.007
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172
L N+I + L + +L L T N + + +
Sbjct: 356 NWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407
Score = 36.5 bits (85), Expect = 0.023
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
+L N++ +K L L +LD+ N+V+ I
Sbjct: 159 QQLSFG-NQVTDLKP---LANLTTLERLDISSNKVSDIS 193
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 68.4 bits (167), Expect = 3e-12
Identities = 39/214 (18%), Positives = 77/214 (35%), Gaps = 42/214 (19%)
Query: 92 CSCDGTRV-DCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN 150
C +G V + + GL +P +P + T L++ DN + + + P L L++ N
Sbjct: 37 CLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGN 91
Query: 151 QVTGIEDNAFEGEN-DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSY 209
Q+T + + P + + L +F +++
Sbjct: 92 QLTSLPVLPPGLLELSIFSNPLTHLPALPS-GLCKL-------------WIFGNQLT--- 134
Query: 210 YVGNYPVS-TMYRDLS--NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL 266
+ PV ++LS +NQ+ L S+L +L N+L + L
Sbjct: 135 ---SLPVLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLP----MLPSGL 183
Query: 267 RIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+ +S+ N ++ +P + L N L
Sbjct: 184 QELSVSDNQLASLPT----LPSELYKLWAYNNRL 213
Score = 53.0 bits (127), Expect = 2e-07
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 23/96 (23%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI------------- 268
NN++ L S L +LI+S N+L + + LK L +
Sbjct: 207 WAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP-VLPSELKELMVSGNRLTSLPMLPS 261
Query: 269 ----ISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+S++ N ++ +PE L + T + + GNPL
Sbjct: 262 GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPL 296
Score = 52.2 bits (125), Expect = 3e-07
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+S N++ L S L L + N+L + ++L L S ++L GN +S
Sbjct: 247 MVSGNRLTSLPML----PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTL 301
Query: 282 GAFADLHAITHLAIGGNPL 300
A ++ T P+
Sbjct: 302 QALREI---TSAPGYSGPI 317
Score = 47.6 bits (113), Expect = 9e-06
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
NNQ+ L S L +L +S N+L + + L L + N ++ +P
Sbjct: 167 WAYNNQLTSLPML----PSGLQELSVSDNQLASLP-TLPSELYKL---WAYNNRLTSLPA 218
Query: 282 GAFADLHAITHLAIGGNPL 300
+ L + GN L
Sbjct: 219 ----LPSGLKELIVSGNRL 233
Score = 37.6 bits (87), Expect = 0.011
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 97 TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
+ S L +P L L + N++ ++ L + ++L N ++
Sbjct: 244 KELMVSGNRLTSLPMLPSGL--LSLSVYRNQLTRLPES--LIHLSSETTVNLEGNPLS 297
Score = 33.7 bits (77), Expect = 0.18
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 97 TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
+ S L +P L EL+++ N + + L+ L + RNQ+T +
Sbjct: 224 KELIVSGNRLTSLPVLPSEL--KELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRL 276
Score = 31.4 bits (71), Expect = 0.95
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 100 DCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
S L +P L +L +N + + + L +L + N++T +
Sbjct: 187 SVSDNQLASLPTLPSEL--YKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTSL 236
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 63.5 bits (155), Expect = 5e-12
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D S+N+I L F L +L L+++ N++ I L L + L N + + +
Sbjct: 48 DFSDNEIRKLDGF--PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105
Query: 282 -GAFADLHAITHLAIGGNPL 300
A L ++T+L I NP+
Sbjct: 106 LDPLASLKSLTYLCILRNPV 125
Score = 55.4 bits (134), Expect = 4e-09
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
DL +I + N + L + + S N+++ + D L+ L+ + ++ N I I E
Sbjct: 25 DLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE 81
Query: 282 GAFADLHAITHLAIGGN 298
G L +T L + N
Sbjct: 82 GLDQALPDLTELILTNN 98
Score = 53.5 bits (129), Expect = 1e-08
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI-DRDALAGLKSLRIISLHGNDISMIP 280
++NN+I + L L++LIL+ N L + D D LA LKSL + + N ++
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
Query: 281 E 281
Sbjct: 130 H 130
Score = 40.0 bits (94), Expect = 6e-04
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
L++N+N I +I +GL LP+L +L L N + + D
Sbjct: 67 KTLLVNNNRICRI-GEGLDQALPDLTELILTNNSLVELGD 105
Score = 39.3 bits (92), Expect = 0.001
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 119 ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
+ +DNEI K+ F L L L + N++ I + +
Sbjct: 46 AIDFSDNEIRKLDG---FPLLRRLKTLLVNNNRICRIGEGLDQ 85
Score = 33.9 bits (78), Expect = 0.083
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
TELIL +N + ++ L +L L + RN VT +
Sbjct: 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130
Score = 33.1 bits (76), Expect = 0.12
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L+ ++ + R + L G I +I E A L + N +
Sbjct: 4 LTAELIEQAAQ--YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEI 54
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 67.8 bits (165), Expect = 5e-12
Identities = 36/198 (18%), Positives = 48/198 (24%), Gaps = 48/198 (24%)
Query: 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCE-------FMIDACYGNPCRNSGTCKLLEE 416
C+ +G C QC C G+ F G C G C
Sbjct: 493 PVCSQRGECLC-----GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC---SC 544
Query: 417 GRFNCECAPGYTGDRCEINIDDCL-----SHKCENNATCVDLIQAYECRC-APGFQGEFC 470
G C C +TG C C C C C PG G+ C
Sbjct: 545 GD--CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC----GSCVCIQPGSYGDTC 598
Query: 471 QTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVD 530
+ C + C C EC G ++ N C++ V
Sbjct: 599 EK----CPTCPDACTFKKEC--------VECKKFDRGALHD---ENTCNRYCRDEIESVK 643
Query: 531 GINDYTCKCEGDFVGKFC 548
+ C
Sbjct: 644 ------ELKDTGKDAVNC 655
Score = 66.6 bits (162), Expect = 1e-11
Identities = 50/269 (18%), Positives = 72/269 (26%), Gaps = 55/269 (20%)
Query: 345 QCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNP 404
+ + VS I +K C P + P C A +
Sbjct: 390 KIGDTVSFSIEAKVRGC---PQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSH 446
Query: 405 CRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHK------------CENNATCVD 452
N+G C C PG+ G +CE + +D + C C+
Sbjct: 447 RCNNGNGTF---ECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC 503
Query: 453 LIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHF--SHYTCECTPGFSGVNC 510
+C C G+ C G C H S C C ++G C
Sbjct: 504 ----GQCVCHSSDFGKITGKYCE-CDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYC 558
Query: 511 --TVNVDDCVNH---MCQNGGTCVDGINDYTCKC-EGDFVGKFCEIAPFVAMMYPQTSPC 564
T D C++ +C G C G +C C + G CE P C
Sbjct: 559 NCTTRTDTCMSSNGLLCSGRGKCECG----SCVCIQPGSYGDTCEKCP----------TC 604
Query: 565 QHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
C +C G
Sbjct: 605 PDACTFKKEC----------VECKKFDRG 623
Score = 38.9 bits (90), Expect = 0.005
Identities = 22/105 (20%), Positives = 29/105 (27%), Gaps = 25/105 (23%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIA-PFVAMMYPQTSPCQ-HHDCKNGICFQPQGSN 58
G C G C C+ D+ G +C M C C+ G C
Sbjct: 538 GHGQCSCG----DCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSC------- 586
Query: 59 DYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQ 103
PG G C CP C+ V+C +
Sbjct: 587 ---VCIQPGSYGD---------TCEKCPTCPDACTFKKECVECKK 619
Score = 30.1 bits (67), Expect = 2.4
Identities = 13/118 (11%), Positives = 24/118 (20%), Gaps = 5/118 (4%)
Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC 539
+N + + V C ++ G D
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLI-- 426
Query: 540 EGDFVGKFCEIAPFVAMMYPQTSPCQHH-DCKNGICFQPQGSNDYLCKCAPGYSGKES 596
V C+ A + + G+C G C+C+
Sbjct: 427 --VQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQ 482
Score = 28.1 bits (62), Expect = 9.6
Identities = 18/104 (17%), Positives = 25/104 (24%), Gaps = 14/104 (13%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSN-- 58
GT G+ C+C ++G CE + P Q +C
Sbjct: 451 GNGTFECGV----CRCGPGWLGSQCECSE------EDYRPSQQDECSPREGQPVCSQRGE 500
Query: 59 --DYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVD 100
C C G + D CS G
Sbjct: 501 CLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC 544
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 64.2 bits (157), Expect = 4e-11
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 38/207 (18%)
Query: 97 TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
T + LK++P L ++ +N + ++ LP L + N + +
Sbjct: 198 TAIYADNNSLKKLPDLPLSL--ESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTL 252
Query: 156 EDNAFEGENDQGCLGDNY--CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGN 213
D E + DNY P+ ++ L E S +
Sbjct: 253 PDLPPSLEALN--VRDNYLTDLPELPQSLTFL----------DVSENIFSGLS------E 294
Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
P + Y + S+N+I L + L +L +S NKL + A L +
Sbjct: 295 LPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELP----ALPPRLERLIASF 346
Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
N ++ +PE + L + NPL
Sbjct: 347 NHLAEVPEL----PQNLKQLHVEYNPL 369
Score = 60.8 bits (148), Expect = 5e-10
Identities = 32/195 (16%), Positives = 57/195 (29%), Gaps = 49/195 (25%)
Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165
+ + + EL LN+ + + P+L L N +T + +
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPEL-----PPHLESLVASCNSLTELPEL------- 109
Query: 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN 225
P L + + + P Y +SN
Sbjct: 110 ---------PQSLK-------------------SLLVDNNNLK-ALSDLPPLLEYLGVSN 140
Query: 226 NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285
NQ+ L S L + + N L+ + SL I+ N + +PE
Sbjct: 141 NQLEKLPE--LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEELPE--LQ 192
Query: 286 DLHAITHLAIGGNPL 300
+L +T + N L
Sbjct: 193 NLPFLTAIYADNNSL 207
Score = 58.1 bits (141), Expect = 4e-09
Identities = 20/207 (9%), Positives = 54/207 (26%), Gaps = 62/207 (29%)
Query: 110 PKDIPL-YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC 168
P+++ + E + + + + ++ + + + + ++ + +
Sbjct: 5 PRNVSNTFLQEPLRHSSNLTEMPVE--AENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 169 LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
C + L +L+N +
Sbjct: 63 SRLRDCLDR---QAHEL------------------------------------ELNNLGL 83
Query: 229 GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG------ 282
L L L+ S N L + + LKSL + + + +S +P
Sbjct: 84 SSLPEL----PPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGV 138
Query: 283 ---------AFADLHAITHLAIGGNPL 300
+ + + + N L
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDNNSL 165
Score = 57.7 bits (140), Expect = 5e-09
Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 89/221 (40%)
Query: 97 TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
T +D S+ + + P L L + NEI L P+L +L++ N++ +
Sbjct: 280 TFLDVSENIFSGLSELPPNL--YYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL 332
Query: 156 EDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYP 215
P + L
Sbjct: 333 --------------------PALPPRLERL------------------------------ 342
Query: 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK----------- 264
S N + + L QL + YN L+ D ++
Sbjct: 343 ------IASFNHLAEVPEL----PQNLKQLHVEYNPLREFP-DIPESVEDLRMNSHLAEV 391
Query: 265 -----SLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
+L+ + + N + P+ ++ L + +
Sbjct: 392 PELPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERV 428
Score = 57.7 bits (140), Expect = 6e-09
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D+ NN + L + L + N+L+ + L L L I N + +P+
Sbjct: 159 DVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD 212
Query: 282 GAFADLHAITHLAIGGNPL 300
++ + G N L
Sbjct: 213 L----PLSLESIVAGNNIL 227
Score = 46.9 bits (112), Expect = 1e-05
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 97 TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
+D LK++P P L + +N++ ++ LP L + N + +
Sbjct: 156 KIIDVDNNSLKKLPDLPPSL--EFIAAGNNQLEELPE---LQNLPFLTAIYADNNSLKKL 210
Score = 43.8 bits (104), Expect = 1e-04
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 97 TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
++ + GL +P+ P L L+ + N + ++ L L +L+ + ++ +
Sbjct: 74 HELELNNLGLSSLPELPPHL--ESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL 129
Score = 40.4 bits (95), Expect = 0.001
Identities = 4/56 (7%), Positives = 13/56 (23%), Gaps = 4/56 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
+ N + + + L ++ ++ A L +
Sbjct: 402 HVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 40.0 bits (94), Expect = 0.002
Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 19/94 (20%)
Query: 222 DLSNNQ-------IGFLSNFTFS--------PLSKLSQLILSYNKLQCIDRDALAGLKSL 266
+ N + + + L QL + N L+ D ++ L
Sbjct: 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP-DIPESVEDL 421
Query: 267 RIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
R ++ + E A + +
Sbjct: 422 R---MNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 63.0 bits (153), Expect = 7e-11
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 36/200 (18%)
Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165
L E+ + + L + S P L LDL N G
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGER--------- 189
Query: 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR---- 221
L CP K T++VL L ++ + V + + +
Sbjct: 190 --GLISALCPLKFP-TLQVLA-------------LRNAGMETPSGVCSALAAARVQLQGL 233
Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
DLS+N + + S+L+ L LS+ L+ + + A L L L N + P
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRLDRNP 290
Query: 281 EGAFADLHAITHLAIGGNPL 300
+ +L + +L++ GNP
Sbjct: 291 --SPDELPQVGNLSLKGNPF 308
Score = 53.0 bits (127), Expect = 1e-07
Identities = 29/199 (14%), Positives = 50/199 (25%), Gaps = 47/199 (23%)
Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
EL L + E+ G L P+L L+LR + E
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE------------LQQ 145
Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR-------DLSNNQI- 228
++VL + + + + DLS+N
Sbjct: 146 WLKPGLKVL-------------SIAQAHSLN------FSCEQVRVFPALSTLDLSDNPEL 186
Query: 229 ---GFLSNFTFSPLSKLSQLILSYNKLQCIDRDA---LAGLKSLRIISLHGNDIS-MIPE 281
G +S L L L ++ A L+ + L N +
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
Query: 282 GAFADLHAITHLAIGGNPL 300
+ + L + L
Sbjct: 247 PSCDWPSQLNSLNLSFTGL 265
Score = 39.1 bits (91), Expect = 0.003
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAG------LKSLRIISLHGND 275
L N ++ + + IL+ + RDA L+++S+
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 276 ISMIPEGAFADLHAITHLAIGGNPLYCDCGL 306
A++ L + NP + GL
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGL 191
Score = 36.8 bits (85), Expect = 0.018
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 105 GLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
GLK++PK +P + L L+ N ++ + LP + L L+ N E
Sbjct: 264 GLKQVPKGLPAKLSVLDLSYN---RLDRNPSPDELPQVGNLSLKGNPFLDSE 312
Score = 32.9 bits (75), Expect = 0.26
Identities = 7/67 (10%), Positives = 14/67 (20%), Gaps = 6/67 (8%)
Query: 100 DCSQRGLKEIPKDIPLYT------TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
G++ L L+ N + L L+L +
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
Query: 154 GIEDNAF 160
+
Sbjct: 267 QVPKGLP 273
Score = 32.6 bits (74), Expect = 0.34
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV 152
+D S L++ L L+ + ++ GL L LDL N++
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP---AKLSVLDLSYNRL 286
Query: 153 TGIEDNAF 160
Sbjct: 287 DRNPSPDE 294
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 64.5 bits (156), Expect = 7e-11
Identities = 30/275 (10%), Positives = 60/275 (21%), Gaps = 53/275 (19%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
+ P + V P G + G C N G C ++++
Sbjct: 160 QSSLALPVDSGEVK--------LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQ- 210
Query: 419 FNCEC-APGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEF-------- 469
C+C G+ G C ++ ++ + C DL Q + F
Sbjct: 211 AVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGL 270
Query: 470 ---CQTKTPFCAGE---------YNPCRNGARCLDHFSHYT------CECTPGFSGVNCT 511
+ N L + + + T
Sbjct: 271 MLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 330
Query: 512 VNVDDCVNHMCQNGGT--------------CVDGINDYTCKCEGDFVGKFCEIAPFVAMM 557
++VD + + +F+G C + V
Sbjct: 331 ISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMG--C-LKEVVYKN 387
Query: 558 YPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYS 592
+ + G + C+
Sbjct: 388 NDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLD 422
Score = 62.9 bits (152), Expect = 2e-10
Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 11/126 (8%)
Query: 382 CRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLS 441
R + G + + + P + + P G ++
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVK--------LDDEPPNSGGGSPCEAGEEGEG 195
Query: 442 HKCENNATCVDLIQAYECRC-APGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCE 500
C N C + C C GF+G+ C + C D +
Sbjct: 196 GVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEY--IATFKGSEYFCYDLSQNPIQS 253
Query: 501 CTPGFS 506
+ +
Sbjct: 254 SSDEIT 259
Score = 58.7 bits (141), Expect = 5e-09
Identities = 27/162 (16%), Positives = 43/162 (26%), Gaps = 30/162 (18%)
Query: 445 ENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPG 504
+ R F+G + + P +G LD P
Sbjct: 130 PELRAAALKLTLASVREREPFKGWIRDVR--VQSSLALPVDSGEVKLDD-------EPPN 180
Query: 505 FSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQTSP 563
G + ++ +C NGG C + C C F GK C + + S
Sbjct: 181 SGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSE 240
Query: 564 CQHHDC--------------------KNGICFQPQGSNDYLC 585
+D +NG+ S DY+
Sbjct: 241 YFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVN 282
Score = 47.9 bits (113), Expect = 1e-05
Identities = 32/222 (14%), Positives = 60/222 (27%), Gaps = 17/222 (7%)
Query: 381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCEC-APGYTGDRCEINIDDC 439
+ + T G C NPC+N+G C+ + C+C GY G CE
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNR-YVCDCSGTGYLGRSCE----RE 657
Query: 440 LSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCL-----DHF 494
+ + + + + +++ + R+ A L
Sbjct: 658 ATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGR 717
Query: 495 SHYTCECTPGFSGVNCTVNVDDCVNHMC------QNGGTCVDGINDYTCKCEGDFVGKFC 548
T G + N++D H ++ VD T + GD
Sbjct: 718 VKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEF 777
Query: 549 EIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPG 590
+ + + + Y+ C G
Sbjct: 778 HNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNG 819
Score = 44.4 bits (104), Expect = 1e-04
Identities = 41/345 (11%), Positives = 80/345 (23%), Gaps = 55/345 (15%)
Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAP 340
+ D+ + L +GG P L+ R ++ L L
Sbjct: 111 KSKRRDMTVFSGLFVGGLPPELRAAALKLTLASVR--EREPFKGWIRDVRVQSSLALPVD 168
Query: 341 ASSFQCKEKVSDEILSKC----NACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCEF 395
+ + ++ + C N GVC + + Q C C+ G+ G+ C
Sbjct: 169 SGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVV-DDQAVCDCSRTGFRGKDCSQ 227
Query: 396 MIDACYGNPCRNSGTCKLLEEGRFNCE-----------------CAPGYTGDRCEINIDD 438
+ + C L + G + D + + +
Sbjct: 228 GKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKN 287
Query: 439 ---CLSHKCENNATCVDLIQA-------YECRCAPGFQGEF-------CQTKTPFCAGEY 481
L + A + T T + +Y
Sbjct: 288 GAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDY 347
Query: 482 NPCRNGAR-----CLDHFSHYTCECTPGFSG-----VNCTVNVDDCVNHMCQNGGTCVDG 531
+ + F G V +V ++ + + G +
Sbjct: 348 TMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKI 407
Query: 532 INDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQ 576
KCE + F + P + I F
Sbjct: 408 HGVVAFKCEN---VATLDPITFETPESFISLPKWNAKKTGSISFD 449
Score = 44.1 bits (103), Expect = 1e-04
Identities = 91/677 (13%), Positives = 157/677 (23%), Gaps = 124/677 (18%)
Query: 1 NGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQTSPCQHHDC------------- 46
NGG C + C C F GK C + + S +D
Sbjct: 200 NGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEIT 259
Query: 47 -------KNGICFQPQGSNDYLC-KCAPGY--------SGVEEFRTRYAGDCLIDAACPS 90
+NG+ S DY+ G SG E D A
Sbjct: 260 LSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAW-- 317
Query: 91 GCSCDGTR--------VD-------CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGL 135
TR VD +Q + D Y + G S+
Sbjct: 318 -HDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNF 376
Query: 136 FGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY 195
G L ++ +N +E + + D KC + E +
Sbjct: 377 MGCLKEVV----YKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESF 432
Query: 196 IAVELFSSRIRVS---------------YYVGNYPVSTMYRDLSNNQIGFLS-------- 232
I++ ++++ S + G + ++ F +
Sbjct: 433 ISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHL 492
Query: 233 NFTFSPLSKLSQLILSYNKLQ-------CIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285
S ++ K+ RD +G IS++ G
Sbjct: 493 YLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSG-----TISVNTLRTPYTAPGESE 547
Query: 286 DLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
L L +GG P + V + G C + + + Q
Sbjct: 548 ILDLDDELYLGGLPE--NKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQ 605
Query: 346 CKEKVSDEILSKC-NACYKSPCTNQGVCEPLPERQYQCRCTP-GYHGQHCEFMIDACYGN 403
V + C +PC N G+C R Y C C+ GY G+ CE +
Sbjct: 606 STAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNR-YVCDCSGTGYLGRSCEREATVLSYD 664
Query: 404 PCRNSGTCKLLE--------EGRFNCECAPGY--------TGDRCEINIDDC---LSHKC 444
+ RF + A G + D + +D L+
Sbjct: 665 GSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNL 724
Query: 445 ENNAT------CVDLIQAYECRCAPGFQ-------GEFCQTKTPFCAGEYNPCRNGARCL 491
++ + + R + + T N +
Sbjct: 725 GKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGI 784
Query: 492 DHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA 551
Y F G ++ + G +
Sbjct: 785 ITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKT 844
Query: 552 PFVAMMYPQTSPCQHHD 568
+
Sbjct: 845 KSSYVALATLQAYTSMH 861
Score = 42.5 bits (99), Expect = 4e-04
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 470 CQTKTPFCAGEYNPCRNGARCLDHFSHYTCECT-PGFSGVNCTVNVDDCVNHMCQ 523
C+ + C + C N CL + ++C+C+ FSG C +
Sbjct: 1013 CEGPSTTCQE--DSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 1065
Score = 42.1 bits (98), Expect = 5e-04
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 502 TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQ 560
G C C C N G C+ + ++C C F G C +
Sbjct: 1005 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Query: 561 TS 562
Sbjct: 1065 GG 1066
Score = 41.0 bits (95), Expect = 0.001
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 342 SSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCEFMIDAC 400
+ C ++ C + C+NQGVC + + C C+ + G C
Sbjct: 1001 DALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTY 1059
Query: 401 YGNPCRNSGTCKLLEEGRFNCE 422
+ T K R +
Sbjct: 1060 IFSKGGGQITYKWPPNDRPSTR 1081
Score = 41.0 bits (95), Expect = 0.001
Identities = 12/55 (21%), Positives = 14/55 (25%), Gaps = 1/55 (1%)
Query: 424 APGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRC-APGFQGEFCQTKTPFC 477
G CE C C N C+ + C C F G C
Sbjct: 1005 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 39.8 bits (92), Expect = 0.003
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 385 TPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCEC-APGYTGDRCEINIDDCLSHK 443
G + CE C + C N G C +G F+C+C ++G C + K
Sbjct: 1005 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTYIFSK 1063
Query: 444 C 444
Sbjct: 1064 G 1064
Score = 31.0 bits (69), Expect = 1.6
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 1 NGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQTS 39
N G C+ + ++C C F G C +
Sbjct: 1027 NQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066
Score = 28.3 bits (62), Expect = 8.7
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 184 VLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVST 218
++ Y+ G +I VEL + + +GN
Sbjct: 874 LILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLI 908
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 60.1 bits (146), Expect = 8e-11
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L N + +SN L KL +L LS N++ L +L ++L GN + I
Sbjct: 55 SLINVGLISVSNL--PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112
Query: 282 -GAFADLHAITHLAIGGNPL 300
L + L + +
Sbjct: 113 LEPLKKLECLKSLDLFNCEV 132
Score = 52.8 bits (127), Expect = 2e-08
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI-DRDALAGLKSLRIISLHGNDISMIP 280
+LS N+I + L L+ L LS NKL+ I + L L+ L+ + L +++ +
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Query: 281 E 281
+
Sbjct: 137 D 137
Score = 39.3 bits (92), Expect = 0.001
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
+L L++N I D L +LPNL L+L N++ I
Sbjct: 74 KKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDIST 112
Score = 38.6 bits (90), Expect = 0.002
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
L L + + + + +LP L KL+L N++ G D E
Sbjct: 52 EFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAE 92
Score = 35.5 bits (82), Expect = 0.022
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
T L L+ N++ I + +L L LDL +VT + D
Sbjct: 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 27.8 bits (62), Expect = 6.2
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 118 TELILNDNEIGKIKS--DGLFGRLPNLIKLDLRRNQ 151
L L + E+ + + +F LP L LD +
Sbjct: 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 61.6 bits (150), Expect = 1e-10
Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 67/206 (32%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
+ ++ + + +T EL L+ N+I + L L +L + RN++
Sbjct: 44 QNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKN 99
Query: 155 IEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNY 214
+ + LF L ++ +
Sbjct: 100 LNGIPS-------------------ACLSRLF-------------LDNNEL--------- 118
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
RD + L + L L L + NKL+ I L L L ++ LHGN
Sbjct: 119 ------RDTDS-----LIH-----LKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGN 160
Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
+I+ L + + + G
Sbjct: 161 EITNTGG--LTRLKKVNWIDLTGQKC 184
Score = 60.8 bits (148), Expect = 2e-10
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++ N++ L+ + LS+L L N+L+ D +L LK+L I+S+ N + I
Sbjct: 91 SVNRNRLKNLNGIP---SACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV- 144
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLS 310
L + L + GN + GL L
Sbjct: 145 -MLGFLSKLEVLDLHGNEITNTGGLTRLK 172
Score = 58.1 bits (141), Expect = 2e-09
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L + L + LS + + +Q + + +L+ + L N IS +
Sbjct: 25 NLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLS- 79
Query: 282 GAFADLHAITHLAIGGNPL 300
DL + L++ N L
Sbjct: 80 -PLKDLTKLEELSVNRNRL 97
Score = 55.4 bits (134), Expect = 1e-08
Identities = 31/182 (17%), Positives = 56/182 (30%), Gaps = 64/182 (35%)
Query: 119 ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC 178
E I I ++ D L N +K +L + VT + +
Sbjct: 1 ESIQRPTPINQVFPDP---GLANAVKQNLGKQSVTDLVSQK-----------------EL 40
Query: 179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSP 238
+ V+ +S I + L+ + FT
Sbjct: 41 S-GVQNF-------------NGDNSNI---------------QSLAG-----MQFFT--- 63
Query: 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
L +L LS+N++ + L L L +S++ N + + A L + L + N
Sbjct: 64 --NLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIPSACL---SRLFLDNN 116
Query: 299 PL 300
L
Sbjct: 117 EL 118
Score = 37.7 bits (88), Expect = 0.006
Identities = 3/39 (7%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
+ L + + S L + + + + +
Sbjct: 22 VKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLA 57
Score = 35.4 bits (82), Expect = 0.036
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
L L+ NEI RL + +DL +
Sbjct: 153 EVLDLHGNEITNTGG---LTRLKKVNWIDLTGQKCV 185
Score = 34.2 bits (79), Expect = 0.078
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRII-SLHGNDISMIP 280
DL N+I + L K++ + L+ K + + L I ++ D I
Sbjct: 156 DLHGNEITNTGGL--TRLKKVNWIDLTGQK---CVNEPVKYQPELYITNTVKDPDGRWIS 210
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 62.4 bits (152), Expect = 2e-10
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D N+ I ++ L+ L++LI + N + +D L+ +L ++ N ++ +
Sbjct: 48 DCHNSSITDMTGIEK--LTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD- 101
Query: 282 GAFADLHAITHLAIGGNPL 300
L +T+L N L
Sbjct: 102 --VTPLTKLTYLNCDTNKL 118
Score = 60.9 bits (148), Expect = 5e-10
Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 46/183 (25%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
T L + N++ +I L L D N +T ++ + L +C
Sbjct: 215 TFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDVSTLSK------LTTLHC--- 261
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
+ + I +++ +T + +
Sbjct: 262 --------------IQTDL------LEIDLTH-------NTQLIYFQAEGCRKIKELDVT 294
Query: 238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGG 297
++L L + +D L+ L + L+ +++ + + + L+
Sbjct: 295 HNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVN 348
Query: 298 NPL 300
+
Sbjct: 349 AHI 351
Score = 60.5 bits (147), Expect = 8e-10
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D S N+I + S L++L N + +D L L + N ++ I
Sbjct: 176 DCSFNKI---TELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID- 228
Query: 282 GAFADLHAITHLAIGGNPL 300
L +T+ NPL
Sbjct: 229 --VTPLTQLTYFDCSVNPL 245
Score = 60.1 bits (146), Expect = 1e-09
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++N I + S + L+ L NKL +D + L L ++ N ++ +
Sbjct: 70 ICTSNNI---TTLDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD- 122
Query: 282 GAFADLHAITHLAIGGNPL 300
+ +T+L N L
Sbjct: 123 --VSQNPLLTYLNCARNTL 139
Score = 58.2 bits (141), Expect = 4e-09
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D I + S KL L L+ +L +D ++ L+ +S I
Sbjct: 303 DCQAAGI---TELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS 356
Query: 282 GAFADLHAITHLAIGGNPL 300
+ A+ +
Sbjct: 357 --VGKIPALNNNFEAEGQT 373
Score = 58.2 bits (141), Expect = 4e-09
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
D N+ ++ +P ++L+ L S+NK+ +D ++ K L ++ N+I+ +
Sbjct: 154 DCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD- 207
Query: 282 GAFADLHAITHLAIGGNPL 300
+T L N L
Sbjct: 208 --LNQNIQLTFLDCSSNKL 224
Score = 54.7 bits (132), Expect = 5e-08
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+N+ L+N +PL+KL+ L NKL +D ++ L ++ N ++ I
Sbjct: 91 ACDSNK---LTNLDVTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID- 143
Query: 282 GAFADLHAITHLAIGGNPL 300
+ +T L N
Sbjct: 144 --VSHNTQLTELDCHLNKK 160
Score = 53.9 bits (130), Expect = 7e-08
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+ N+ L+ S L+ L + N L ID ++ L + H N +
Sbjct: 112 NCDTNK---LTKLDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD 165
Query: 282 GAFADLHAITHLAIGGNPL 300
+T L N +
Sbjct: 166 --VTPQTQLTTLDCSFNKI 182
Score = 53.2 bits (128), Expect = 1e-07
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
+ ++ + L+ L+ L + + + + L L + N+I+ +
Sbjct: 25 AAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTLD-- 80
Query: 283 AFADLHAITHLAIGGNPL 300
+ +T+LA N L
Sbjct: 81 -LSQNTNLTYLACDSNKL 97
Score = 42.4 bits (100), Expect = 4e-04
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
T +DC + ++ I T T+LI N I + + NL L N++T
Sbjct: 45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTN 99
Query: 155 I 155
+
Sbjct: 100 L 100
Score = 38.5 bits (90), Expect = 0.005
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T L +++ I + +L L KL N +T ++
Sbjct: 45 TSLDCHNSSITDMTG---IEKLTGLTKLICTSNNITTLD 80
Score = 36.6 bits (85), Expect = 0.023
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T ++C++ L EI TEL + N K + L LD N++T ++
Sbjct: 130 TYLNCARNTLTEIDVSHNTQLTELDCHLN---KKITKLDVTPQTQLTTLDCSFNKITELD 186
Score = 35.4 bits (82), Expect = 0.050
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
+ I + LA L SL H + I+ + L +T L N
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSL---DCHNSSITDMTG--IEKLTGLTKLICTSN 74
Query: 299 PL 300
+
Sbjct: 75 NI 76
Score = 35.0 bits (81), Expect = 0.064
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
T +DCS + E+ D+ L + N I K+ + L LD N++T
Sbjct: 173 TTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTE 226
Query: 155 IE 156
I+
Sbjct: 227 ID 228
Score = 34.7 bits (80), Expect = 0.080
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T + C L + T L + N++ K+ + P L L+ RN +T I+
Sbjct: 88 TYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID 143
Score = 34.3 bits (79), Expect = 0.12
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
L LN+ E+ ++ L L +
Sbjct: 321 VYLYLNNTELTELD----VSHNTKLKSLSCVNAHIQDF 354
Score = 33.5 bits (77), Expect = 0.22
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T ++C L ++ T L N + +I L +LD N+
Sbjct: 109 TYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL 164
Query: 157 D 157
D
Sbjct: 165 D 165
Score = 31.6 bits (72), Expect = 0.74
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
T + C Q L EI + + L LD + +T ++
Sbjct: 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGC---RKIKELDVTHNTQLYLLDCQAAGITELD 313
Score = 31.2 bits (71), Expect = 1.1
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 3/43 (6%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
L + I S G++P L Q +
Sbjct: 342 KSLSCVNAHIQDFSS---VGKIPALNNNFEAEGQTITMPKETL 381
Score = 29.7 bits (67), Expect = 2.9
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 119 ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
+ E+ + +L L LD + +T +
Sbjct: 22 SEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSITDMTG 59
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 55.2 bits (134), Expect = 2e-10
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 512 VNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
V+ D C ++ C NGG+C D IN Y C C F GK CE+
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 54.0 bits (131), Expect = 5e-10
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
++ D C S+ C N +C D I +YEC C GF+G+ C+
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNC 510
NPC NG C D + Y C C GF G NC
Sbjct: 9 NPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
D C NPC N G+CK + C C G+ G CE+
Sbjct: 3 GDQCESNPCLNGGSCKDDI-NSYECWCPFGFEGKNCEL 39
Score = 42.9 bits (102), Expect = 4e-06
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEI 27
NGG+C D IN Y C C F GK CE+
Sbjct: 13 NGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 36.7 bits (86), Expect = 6e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
+ C +PC N G C+ Y+C C G+ G++CE
Sbjct: 4 DQCESNPCLNGGSCKDDINS-YECWCPFGFEGKNCEL 39
Score = 27.4 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 39 SPCQHH-DCKNGICFQPQGSNDYLCKCAPGYSG 70
+PC + CK+ I N Y C C G+ G
Sbjct: 9 NPCLNGGSCKDDI-------NSYECWCPFGFEG 34
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 57.0 bits (138), Expect = 6e-10
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
N + ++N L+KL +L LS N++ +L ++L GN I +
Sbjct: 48 STINVGLTSIANL--PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105
Query: 282 -GAFADLHAITHLAIGGNPL 300
L + L + +
Sbjct: 106 IEPLKKLENLKSLDLFNCEV 125
Score = 51.6 bits (124), Expect = 4e-08
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMIP 280
+LS+N++ L+ L LS NK++ + + L L++L+ + L +++ +
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Query: 281 E 281
+
Sbjct: 130 D 130
Score = 38.5 bits (90), Expect = 0.001
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
+L L+DN + + L + PNL L+L N++ +
Sbjct: 67 KKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLST 105
Score = 38.1 bits (89), Expect = 0.002
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 99 VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
++ +R E+ P EL+L+++ + K +GL L L +T I +
Sbjct: 1 MEMGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN 59
Score = 37.7 bits (88), Expect = 0.002
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 119 ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
L + + I + +L L KL+L N+V+G + E
Sbjct: 46 FLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGLEVLAE 85
Score = 33.5 bits (77), Expect = 0.067
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
T L L+ N+I + + +L NL LDL +VT + D
Sbjct: 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 55.9 bits (136), Expect = 2e-09
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++ L L + S+L Y +L + A+ L + +++ +
Sbjct: 10 QEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKA 67
Query: 282 GAFADLHAITHLAIGGNPL 300
+L + L L
Sbjct: 68 A-VGELPEKSKLQEIYQEL 85
Score = 54.4 bits (132), Expect = 7e-09
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++ L L + S+L Y +L + A+ L + +++ +
Sbjct: 56 QEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTELKA 113
Query: 282 GAFADLHAITHLAIGGNPL 300
A +L + L L
Sbjct: 114 -AVGELPEKSKLQEIYQEL 131
Score = 47.8 bits (115), Expect = 1e-06
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
L + S+L Y +L + A+ L + +++ + A +L + L
Sbjct: 3 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 299 PL 300
L
Sbjct: 61 EL 62
Score = 47.1 bits (113), Expect = 2e-06
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
++ L L + S+L Y +L + + A+ L +++ +
Sbjct: 102 QEIYQELTELKA-AVGELPEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQELTDLKT 159
Query: 282 GAFADLH 288
AF L
Sbjct: 160 -AFERLG 165
Score = 39.4 bits (93), Expect = 0.001
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 106 LKEIPKDI----PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
L E+ + ++L E+ ++K+ G LP+ K ++T +
Sbjct: 108 LTELKAAVGELPEK--SKLQEIYQELTQLKAA--VGELPDQSKQQQIYQELTDL 157
Score = 38.2 bits (90), Expect = 0.002
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 106 LKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
L + + ++L E+ ++K+ G LP KL ++T +
Sbjct: 39 LTRLKAAVGELPEKSKLQEIYQELTRLKAA--VGELPEKSKLQEIYQELTRL 88
Score = 37.8 bits (89), Expect = 0.003
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 106 LKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
L + + ++L E+ ++K+ G LP KL ++T +
Sbjct: 62 LTRLKAAVGELPEKSKLQEIYQELTRLKAA--VGELPEKSKLQEIYQELTEL 111
Score = 35.5 bits (83), Expect = 0.017
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
++L E+ ++K+ G LP KL ++T +
Sbjct: 7 SKLQEIYQELTRLKAA--VGELPEKSKLQEIYQELTRL 42
Score = 31.3 bits (72), Expect = 0.43
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 137 GRLPNLIKLDLRRNQVTGI 155
G LP KL ++T +
Sbjct: 1 GELPEKSKLQEIYQELTRL 19
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 56.2 bits (136), Expect = 3e-09
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L N I + N + L +L +SYN++ + + L +LR++ + N I+ E
Sbjct: 76 SLGRNLIKKIENL-DAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGE 132
Query: 282 -GAFADLHAITHLAIGGNPLY 301
A L + L + GNPLY
Sbjct: 133 IDKLAALDKLEDLLLAGNPLY 153
Score = 46.6 bits (111), Expect = 5e-06
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 237 SPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296
S L L LS N ++ I +L+G+++LRI+SL N I I E A + L I
Sbjct: 45 STLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWIS 101
Query: 297 GN 298
N
Sbjct: 102 YN 103
Score = 42.4 bits (100), Expect = 1e-04
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 100 DCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
++++ + L L+ N I KI L + NL L L RN + IE+
Sbjct: 31 HGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSL-SGMENLRILSLGRNLIKKIEN 87
Score = 41.6 bits (98), Expect = 2e-04
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 223 LSNNQIGFLSNFTFSPLSKLS--QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
+ I ++ +L ++ +D L+ LK+ + ++L N+I I
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKI- 63
Query: 281 EGAFADLHAITHLAIGGN 298
+ + + L++G N
Sbjct: 64 SS-LSGMENLRILSLGRN 80
Score = 37.4 bits (87), Expect = 0.006
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
EL ++ N+I + +L NL L + N++T +
Sbjct: 96 EELWISYNQIASLSG---IEKLVNLRVLYMSNNKITNWGE 132
Score = 37.0 bits (86), Expect = 0.009
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
EL I K+ D L L L N + I
Sbjct: 28 VELHGMIPPIEKM--DATLSTLKACKHLALSTNNIEKIS 64
Score = 35.0 bits (81), Expect = 0.041
Identities = 8/47 (17%), Positives = 13/47 (27%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
L +++N+I L L L L N +
Sbjct: 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164
Score = 34.3 bits (79), Expect = 0.060
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
L L N I KI + L L +L + NQ+ +
Sbjct: 73 RILSLGRNLIKKI--ENLDAVADTLEELWISYNQIASLS 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 58.4 bits (141), Expect = 4e-09
Identities = 32/245 (13%), Positives = 61/245 (24%), Gaps = 105/245 (42%)
Query: 97 TRVDCSQRGLKEIPKDIPLYTTELILNDN-------EIGKIK----SDGLFGRLP----N 141
+ + ++ L +P ++P T L + N ++ D LP +
Sbjct: 62 SELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPAS 121
Query: 142 LIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELF 201
L LD+ NQ+T + P+ + +
Sbjct: 122 LKHLDVDNNQLTML--------------------PELPALLEYI---------------- 145
Query: 202 SSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA 261
N NQ+ L + L L + N+L +
Sbjct: 146 --------NADN------------NQLTMLPEL----PTSLEVLSVRNNQLTFLP----E 177
Query: 262 GLKSLRIISLHGNDISMIPEG--------------------------AFADLHAITHLAI 295
+SL + + N + +P L + +
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237
Query: 296 GGNPL 300
NPL
Sbjct: 238 EDNPL 242
Score = 51.9 bits (124), Expect = 4e-07
Identities = 29/204 (14%), Positives = 53/204 (25%), Gaps = 70/204 (34%)
Query: 100 DCSQRGLKEIPKDIPLYTTEL---ILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
+ + D + L + S + +L L R ++ +
Sbjct: 16 NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLP 75
Query: 157 DNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPV 216
DN L + VL
Sbjct: 76 DN----------LPPQ---------ITVL------------------------------- 85
Query: 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI 276
+++ N + L + L L N+L + + A LK L + N +
Sbjct: 86 -----EITQNALISLPEL----PASLEYLDACDNRLSTL-PELPASLKHLD---VDNNQL 132
Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
+M+PE A L ++ N L
Sbjct: 133 TMLPE-LPALL---EYINADNNQL 152
Score = 48.8 bits (116), Expect = 4e-06
Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 7/116 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQ----LILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
D+S N + L + N++ I + + L I L N +S
Sbjct: 186 DVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLS 243
Query: 278 MIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRD 333
+ + A G D V + + +
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP-ENKQSDVSQ 298
Score = 37.6 bits (87), Expect = 0.013
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 8/63 (12%)
Query: 97 TRVDCSQRGLKEIPKDI------PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN 150
+D S L+ +P +N I I + L + L N
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN--ILSLDPTCTIILEDN 240
Query: 151 QVT 153
++
Sbjct: 241 PLS 243
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 54.7 bits (130), Expect = 9e-09
Identities = 34/184 (18%), Positives = 51/184 (27%), Gaps = 22/184 (11%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID------ACYGNPCRNSGTC 411
+A G + + C C G + G C G C
Sbjct: 4 ASAVTVDTICXNGQLVQMS-NHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQC 62
Query: 412 ----KLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNA----TCVDLIQAYECRCAP 463
+ + C C GYT +D C C + + IQ+ C CA
Sbjct: 63 IENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAI 122
Query: 464 GFQGEFCQ----TKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG---VNCTVNVDD 516
G T T A + + C + Y C+C GF+ N +
Sbjct: 123 GXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHH 182
Query: 517 CVNH 520
+H
Sbjct: 183 HHHH 186
Score = 49.3 bits (116), Expect = 6e-07
Identities = 29/163 (17%), Positives = 44/163 (26%), Gaps = 17/163 (10%)
Query: 444 CENNATCVDLIQAYECRCAPGFQG---------EFCQTKTPFCAGEYNPCRNGARCLDHF 494
N V + + C C G C +T A
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQV 71
Query: 495 SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG----TCVDGINDYTCKCEGDFVGKFCEI 550
+ Y C C G++ T +D C C G + I C C V +
Sbjct: 72 NMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDE 131
Query: 551 APFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
+ D N +C +G Y C+C G++
Sbjct: 132 XXCTXTGETACQLXCNTD--NEVCXNVEGV--YXCQCMEGFTF 170
Score = 27.7 bits (60), Expect = 7.7
Identities = 18/101 (17%), Positives = 24/101 (23%), Gaps = 8/101 (7%)
Query: 3 GTCVDGINDYTCKCEGDFVG---KFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSND 59
G V N + C C V CE + + C
Sbjct: 16 GQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNM-- 73
Query: 60 YLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVD 100
Y C C GY+ E+ D C C +
Sbjct: 74 YXCGCIEGYTLXEDTCVL---DVCQYXNCGESGECIVEYLS 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 57.1 bits (137), Expect = 1e-08
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMIP 280
S+N + + + L +L +L+L N+LQ L L +++L GN +
Sbjct: 492 QASDNALENVDGV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549
Query: 281 E 281
Sbjct: 550 G 550
Score = 55.9 bits (134), Expect = 2e-08
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
L++ + L + L ++ L LS+N+L+ + ALA L+ L ++ N + +
Sbjct: 447 HLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVDG 503
Query: 282 GAFADLHAITHLAIGGNPL 300
A+L + L + N L
Sbjct: 504 --VANLPRLQELLLCNNRL 520
Score = 42.8 bits (100), Expect = 2e-04
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
EL+L +N + + + P L+ L+L+ N + E
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 41.7 bits (97), Expect = 6e-04
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 244 QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
L L++ L + L L + + L N + +P A L + L N L
Sbjct: 445 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNAL 498
Score = 41.7 bits (97), Expect = 6e-04
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
T +D S L+ +P + L +DN + + LP L +L L N++
Sbjct: 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG---VANLPRLQELLLCNNRLQQ 522
Query: 155 IED 157
Sbjct: 523 SAA 525
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 56.8 bits (138), Expect = 1e-08
Identities = 34/227 (14%), Positives = 61/227 (26%), Gaps = 71/227 (31%)
Query: 108 EIPKDIPLYT-----TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG------- 154
L L ++ N+I G + R NL LD+ N +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPFLGD 221
Query: 155 --------IEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSR-- 204
I N G+ + + +
Sbjct: 222 CSALQHLDISGNKLSGD--------------------------------FSRAISTCTEL 249
Query: 205 --IRVSY--YVGNYPVSTMYR----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ-C 254
+ +S +VG P + L+ N+ G + +F L+ L LS N
Sbjct: 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 255 IDRDALAGLKSLRIISLHGNDIS-MIPEGAFADLHAITHLAIGGNPL 300
+ L ++L N+ S +P + + L + N
Sbjct: 310 VPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Score = 53.0 bits (128), Expect = 2e-07
Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 51/196 (26%)
Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG-IEDNAFEGENDQGCLGDNYCP 175
L L+ N G++ ++ L LDL N+ +G + P
Sbjct: 321 ESLALSSNNFSGEL-PMDTLLKMRGLKVLDLSFNEFSGEL-------------------P 360
Query: 176 P---KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR-DLSNNQI-GF 230
+ ++ L ++ FS I + + P +T+ L NN G
Sbjct: 361 ESLTNLSASLLTL---------DLSSNNFSGPILPN--LCQNPKNTLQELYLQNNGFTGK 409
Query: 231 LSNFTFSPLSKLSQLILSYNKL-----QCIDRDALAGLKSLRIISLHGNDIS-MIPEGAF 284
+ S S+L L LS+N L L L LR + L N + IP+
Sbjct: 410 IPPT-LSNCSELVSLHLSFNYLSGTIPSS-----LGSLSKLRDLKLWLNMLEGEIPQE-L 462
Query: 285 ADLHAITHLAIGGNPL 300
+ + L + N L
Sbjct: 463 MYVKTLETLILDFNDL 478
Score = 52.6 bits (127), Expect = 3e-07
Identities = 49/202 (24%), Positives = 71/202 (35%), Gaps = 42/202 (20%)
Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG----------------IEDNAF 160
L L +N+ G+I D L G L LDL N G + N F
Sbjct: 272 QYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
GE L K ++VL ++ FS + S + N S +
Sbjct: 331 SGELPMDTLL------KMR-GLKVL---------DLSFNEFSGELPES--LTNLSASLLT 372
Query: 221 RDLSNNQI-GFL-SNFTFSPLSKLSQLILSYNKLQ-CIDRDALAGLKSLRIISLHGNDIS 277
DLS+N G + N +P + L +L L N I L+ L + L N +S
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLS 431
Query: 278 -MIPEGAFADLHAITHLAIGGN 298
IP + L + L + N
Sbjct: 432 GTIPS-SLGSLSKLRDLKLWLN 452
Score = 50.7 bits (122), Expect = 1e-06
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCI--DRDALAGLKSLRIISLHGNDIS- 277
LSN+ I G +S F + L+ L LS N L +L L+ +++ N +
Sbjct: 83 FLSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140
Query: 278 MIPEGAFADLHAITHLAIGGNPL 300
L+++ L + N +
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSI 163
Score = 50.7 bits (122), Expect = 1e-06
Identities = 34/196 (17%), Positives = 57/196 (29%), Gaps = 52/196 (26%)
Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC-------- 168
T L L+ N + G + + G L L++ N + G+ G
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF------PGKVSGGLKLNSLEVL 156
Query: 169 -LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
L N S V + + + + +S N+
Sbjct: 157 DLSANS---------------------------ISGANVVGWVLSDGCGELKHLAISGNK 189
Query: 228 I-GFLSNFTFSPLSKLSQLILSYNKLQC-IDRDALAGLKSLRIISLHGNDIS-MIPEGAF 284
I G + S L L +S N I L +L+ + + GN +S A
Sbjct: 190 ISGDVD---VSRCVNLEFLDVSSNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSR-AI 243
Query: 285 ADLHAITHLAIGGNPL 300
+ + L I N
Sbjct: 244 STCTELKLLNISSNQF 259
Score = 47.2 bits (113), Expect = 1e-05
Identities = 52/214 (24%), Positives = 79/214 (36%), Gaps = 37/214 (17%)
Query: 108 EIPKDIPLYT--TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG---------- 154
EIP + T + L++N + G+I GRL NL L L N +G
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCR 538
Query: 155 ------IEDNAFEGE------NDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFS 202
+ N F G G + N+ K + DG EC+ A L
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKKECHGAGNLLE 595
Query: 203 SRIRVSYYVGNYPVSTMYRDLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ-CIDRDAL 260
+ S + + ++++ G S TF + L +SYN L I +
Sbjct: 596 FQGIRSEQLNRLS-TRNPCNITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLSGYIP-KEI 652
Query: 261 AGLKSLRIISLHGNDIS-MIPEGAFADLHAITHL 293
+ L I++L NDIS IP+ DL + L
Sbjct: 653 GSMPYLFILNLGHNDISGSIPD-EVGDLRGLNIL 685
Score = 46.8 bits (112), Expect = 2e-05
Identities = 53/249 (21%), Positives = 76/249 (30%), Gaps = 60/249 (24%)
Query: 108 EIPKDIPLYT--TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG---------- 154
EIPK I L L++N G I ++ G +LI LDL N G
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 155 --IEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRA----GECYIAVELFSSRIRVS 208
I N G + ++ +C +L + G +
Sbjct: 563 GKIAANFIAG-KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 209 ----YYVGNYP-VSTMYRDLSNNQ--------IGFLS----------NFT------FSPL 239
N + + D+S N IG + + + L
Sbjct: 622 GHTSPTFDNNGSMMFL--DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 240 SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MIPEGAFADLHAITHLAIGGN 298
L+ L LS NKL A++ L L I L N++S IPE N
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ--FETFPPAKFLNN 737
Query: 299 P-LYCDCGL 306
P L CG
Sbjct: 738 PGL---CGY 743
Score = 46.1 bits (110), Expect = 3e-05
Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 48/192 (25%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
L ++ N + +L +L LDL N G N G + + C
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS--------ISGANVVGWVLSDGCG-- 178
Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR----DLSNNQ----IG 229
++ L S + VS D+S+N I
Sbjct: 179 ---ELKHL----AISGNK-----ISGDV---------DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 230 FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MIPEGAFADLH 288
FL + S L L +S NKL A++ L+++++ N IP L
Sbjct: 218 FLGD-----CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL- 271
Query: 289 AITHLAIGGNPL 300
+L++ N
Sbjct: 272 --QYLSLAENKF 281
Score = 41.4 bits (98), Expect = 9e-04
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ-CIDRDALAGLKSLRIISLHGNDIS-M 278
L N + G + + L LIL +N L I L+ +L ISL N ++
Sbjct: 448 KLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGE 505
Query: 279 IPEGAFADLHAITHLAIGGNPLY 301
IP+ L + L + N
Sbjct: 506 IPKW-IGRLENLAILKLSNNSFS 527
Score = 40.7 bits (96), Expect = 0.001
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 222 DLSNNQIGFLS---NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS- 277
DLS+ + + + L+ L L LS + + SL + L N +S
Sbjct: 56 DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSG 114
Query: 278 MIPEGA-FADLHAITHLAIGGNPL 300
+ + L + N L
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTL 138
Score = 32.2 bits (74), Expect = 0.54
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 108 EIPKDI----PLYTTELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG 154
I ++ EL L +N GKI L+ L L N ++G
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPT--LSNCSELVSLHLSFNYLSG 432
Score = 31.4 bits (72), Expect = 1.1
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 91 GCSCDGTRV---DCSQRGLK----EIPKDIPLYT--TELILNDNEI-GKIKSDGLFGRLP 140
G +C +V D S + L + + T L L+++ I G + F
Sbjct: 44 GVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG---FKCSA 100
Query: 141 NLIKLDLRRNQVTG 154
+L LDL RN ++G
Sbjct: 101 SLTSLDLSRNSLSG 114
Score = 31.0 bits (71), Expect = 1.3
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 108 EIPKDIPLYT--TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG 154
IP + + +L L N + G+I + + L L L N +TG
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQE--LMYVKTLETLILDFNDLTG 480
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 52.9 bits (127), Expect = 2e-08
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 27/142 (19%)
Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN--------IDDCLS---HKCE 445
C C +C C C PG++ I I++C + C
Sbjct: 2 SRGC-ARWCPQDSSCV----NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 446 NNATCVDLIQAYECRCAPGFQGEFCQTKTPF-----------CAGEYNPCRNGARCLDHF 494
+ C + +Y+C C+PG++ C+ + C + C +
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116
Query: 495 SHYTCECTPGFSGVNCTVNVDD 516
Y+C C PG+ + N
Sbjct: 117 GSYSCRCRPGWKPRHGIPNNQK 138
Score = 50.2 bits (120), Expect = 1e-07
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 26/133 (19%)
Query: 435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPF--------CA-GEYNPCR 485
+ C + C +++CV+ A CRC PGF TP CA C
Sbjct: 1 DSRGC-ARWCPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 486 NGARCLDHFSHYTCECTPGFSGVNCTVN-----------VDDCV--NHMCQNGGTCVDGI 532
+ C + Y C C+PG+ V+ VD+C H C + C + +
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116
Query: 533 NDYTCKCEGDFVG 545
Y+C+C +
Sbjct: 117 GSYSCRCRPGWKP 129
Score = 46.7 bits (111), Expect = 2e-06
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 25/112 (22%)
Query: 380 YQCRCTPGYHGQHCEFM--------IDACY---GNPCRNSGTCKLLEEGRFNCECAPGYT 428
CRC PG+ I+ C C C E G ++C C+PGY
Sbjct: 19 TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTE-GSYDCVCSPGYE 77
Query: 429 GDRCEIN-----------IDDCLS--HKCENNATCVDLIQAYECRCAPGFQG 467
+D+C S H+C+++ C + + +Y CRC PG++
Sbjct: 78 PVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP 129
Score = 27.9 bits (62), Expect = 5.4
Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 17/76 (22%)
Query: 380 YQCRCTPGYHGQHCEFMIDACYG-------------NPCRNSGTCKLLEEGRFNCECAPG 426
Y C C+PGY + C +S C G ++C C PG
Sbjct: 68 YDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV-GSYSCRCRPG 126
Query: 427 YTGDRCE---INIDDC 439
+ C
Sbjct: 127 WKPRHGIPNNQKDTVC 142
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 52.4 bits (126), Expect = 2e-07
Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 59/218 (27%)
Query: 118 TELILNDNEIGKIKSDGLFG---------RLPNLIKLDLRRNQVTGIEDNAFEGENDQGC 168
+D G++K + + P L + L N
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-----------PTAQ 111
Query: 169 ------LGDNYCPPKCTCTVRVL-FYD---GRAGECYIAVELFSSRIRVSYYVGNYPVST 218
L + + L ++ G IA P+ +
Sbjct: 112 EPLIDFLSKH-------TPLEHLYLHNNGLGPQAGAKIA-RALQELAVNKKAKNAPPLRS 163
Query: 219 MYRDLSNNQIG-----FLSNFTFSPLSKLSQLILSYNKL-----QCIDRDALAGLKSLRI 268
+ N++ + TF L + + N + + + + LA + L++
Sbjct: 164 I--ICGRNRLENGSMKEWAK-TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220
Query: 269 ISLHGNDISMIPEGAFA------DLHAITHLAIGGNPL 300
+ L N + G+ A + L + L
Sbjct: 221 LDLQDNTFT--HLGSSALAIALKSWPNLRELGLNDCLL 256
Score = 39.3 bits (92), Expect = 0.003
Identities = 35/197 (17%), Positives = 57/197 (28%), Gaps = 63/197 (31%)
Query: 118 TELILNDNEIGKIKSDG------LFGRLPNLIKLDLRRNQVT--GIEDNAFEGENDQGCL 169
+I N + + F L + + +N + GIE EG L
Sbjct: 162 RSIICGRNRLE---NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG------L 212
Query: 170 GDNYCPPKCTCTVRVLFYD------GRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL 223
++VL D G +A+ L + + L
Sbjct: 213 AYC-------QELKVL--DLQDNTFTHLGSSALAIAL----------KSWPNLREL--GL 251
Query: 224 SNNQIG------FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGL--------KSLRII 269
++ + + F+ L L L YN I+ DA+ L L +
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN---EIELDAVRTLKTVIDEKMPDLLFL 308
Query: 270 SLHGNDISMIPEGAFAD 286
L+GN S E D
Sbjct: 309 ELNGNRFS--EEDDVVD 323
Score = 36.6 bits (85), Expect = 0.020
Identities = 18/116 (15%), Positives = 31/116 (26%), Gaps = 31/116 (26%)
Query: 222 DLSNNQIGFLSNFTFSPL----------SKLSQLILSYNKLQCIDRDALAGL----KSLR 267
+ S+ G + + L KL + LS N ++ L L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 268 IISLHGNDISMIPEGA---------------FADLHAITHLAIGGNPLYCDCGLAW 308
+ LH N + P+ + + + G N L W
Sbjct: 126 HLYLHNNGLG--PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179
Score = 33.9 bits (78), Expect = 0.15
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 30/103 (29%)
Query: 222 DLSNNQIG---------FLSNFTFSPLSKLSQLILSYNKL-----QCIDRDALAGLKSLR 267
L + I L + +++LS N + + + + +A K L
Sbjct: 10 SLKLDAITTEDEKSVFAVLLEDD-----SVKEIVLSGNTIGTEAARWL-SENIASKKDLE 63
Query: 268 IISLHGNDI----SMIPEG------AFADLHAITHLAIGGNPL 300
I IPE A + + + N
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 52.3 bits (125), Expect = 3e-07
Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 45/242 (18%)
Query: 184 VLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLS 243
++ Y+ G +I VEL + + +GN + + PL+
Sbjct: 42 LILYNSGDGNDFIVVELVKGYLHYVFDLGNGANL-------------IKGSSNKPLNDNQ 88
Query: 244 --QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301
+++S + +L + + + I GA +L + L IGG
Sbjct: 89 WHNVMISRDT------------SNLHTVKIDTKITTQITAGAR-NLDLKSDLYIGGVAK- 134
Query: 302 CDCGLAWLSEWVKRDYVEPGIARCTEPASMRD----KLLLTAPASSFQCKEKVSDEILSK 357
K + + G C + L + + C ++
Sbjct: 135 -----ETYKSLPKLVHAKEGFQGC-----LASVDLNGRLPDLISDALFCNGQIERGCEGP 184
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCEFMIDACYGNPCRNSGTCKLLEE 416
C + C+NQGVC + + C C+ + G C + T K
Sbjct: 185 STTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPN 243
Query: 417 GR 418
R
Sbjct: 244 DR 245
Score = 48.1 bits (114), Expect = 6e-06
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Query: 502 TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQ 560
G C C C N G C+ + ++C C F G C +
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Query: 561 TSPCQHHDCKN 571
+ N
Sbjct: 233 GGQITYKWPPN 243
Score = 45.4 bits (107), Expect = 4e-05
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 470 CQTKTPFCAGEYNPCRNGARCLDHFSHYTCECT-PGFSGVNCTVNVDDCVNHMCQNGGTC 528
C+ + C + + C N CL + ++C+C+ FSG C + T
Sbjct: 181 CEGPSTTC--QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY 238
Query: 529 VDGIND 534
ND
Sbjct: 239 KWPPND 244
Score = 45.0 bits (106), Expect = 5e-05
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 385 TPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECA-PGYTGDRCEINIDDCLSHK 443
G + CE C + C N G C +G F+C+C+ ++G C + K
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTYIFSK 231
Query: 444 CENNATC 450
T
Sbjct: 232 GGGQITY 238
Score = 43.8 bits (103), Expect = 1e-04
Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 1/76 (1%)
Query: 424 APGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCA-PGFQGEFCQTKTPFCAGEYN 482
G CE C C N C+ + C C+ F G C
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Query: 483 PCRNGARCLDHFSHYT 498
+ + + T
Sbjct: 233 GGQITYKWPPNDRPST 248
Score = 35.0 bits (80), Expect = 0.068
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 1 NGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQTSPCQHHDCKN 48
N G C+ + ++C C F G C + + N
Sbjct: 195 NQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPN 243
Score = 28.8 bits (64), Expect = 5.8
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 559 PQTSPCQHHDCKN-GICFQPQGSNDYLCKCA-PGYSGK 594
++ CQ C N G+C Q + + C C+ +SG
Sbjct: 183 GPSTTCQEDSCSNQGVCL--QQWDGFSCDCSMTSFSGP 218
Score = 28.4 bits (63), Expect = 7.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 36 PQTSPCQHHDCKN-GICFQPQGSNDYLCKCA-PGYSG 70
++ CQ C N G+C Q + + C C+ +SG
Sbjct: 183 GPSTTCQEDSCSNQGVCL--QQWDGFSCDCSMTSFSG 217
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 51.2 bits (122), Expect = 3e-07
Identities = 26/198 (13%), Positives = 44/198 (22%), Gaps = 42/198 (21%)
Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDA------CYGNPCRNSGTCKL 413
+ G Y G+ + + + P + G L
Sbjct: 101 VAVSIKSNDGGKTLT-GTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVL 159
Query: 414 LEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTK 473
G R + N+ + K + + Y GF+G
Sbjct: 160 ---------------GTRGKQNVI-NVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPD 203
Query: 474 TPFC----AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCV 529
T G P G + G V + N +GG +
Sbjct: 204 TYTVENQWGGSTAPWNPGGFWMI-----------GARNGQNVVAL----NVASSDGGKTL 248
Query: 530 DGINDYTCKCEGDFVGKF 547
G Y + F +
Sbjct: 249 AGTMIYNGEGPIGFRARL 266
Score = 50.9 bits (121), Expect = 4e-07
Identities = 29/180 (16%), Positives = 43/180 (23%), Gaps = 41/180 (22%)
Query: 380 YQCRCTPGYHGQHCEFMIDA------CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
Y G+ G P + G L G R +
Sbjct: 53 YNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVL---------------GARDK 97
Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ----TKTPFCAGEYNPCRNGAR 489
NI +S K + + Y GF+ E + G P +G
Sbjct: 98 QNIV-AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGV 156
Query: 490 CLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
+ G NV V+ +GG + G Y + F G
Sbjct: 157 WV--------------LGTRGKQNVI-NVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTS 201
Score = 40.5 bits (94), Expect = 8e-04
Identities = 16/111 (14%), Positives = 29/111 (26%), Gaps = 19/111 (17%)
Query: 443 KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFC----AGEYNPCRNGARCLDHFSHYT 498
K ++ + Y GF+G G P + G +
Sbjct: 39 KSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVL------ 92
Query: 499 CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
G N+ V+ +GG + G Y + F + +
Sbjct: 93 --------GARDKQNIV-AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTD 134
Score = 27.7 bits (61), Expect = 9.9
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCE 26
+GG + G Y + F G
Sbjct: 176 DGGKTLSGTMTYNGEGPIGFRGTLTS 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 6e-07
Identities = 44/290 (15%), Positives = 81/290 (27%), Gaps = 80/290 (27%)
Query: 124 DNEIGKIK---SDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTC 180
D E G+ + D L + + V + + E +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSKEE----IDHIIMSKDAVS 62
Query: 181 TVRVLFYDGRAGECYIAVELFSSRIRVSYYVG-----NY-----PVSTMYRDLSNNQIGF 230
LF + + V +V NY P+ T R S +
Sbjct: 63 GTLRLF---------WTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 231 LSNFTFSPLSKLSQLILSYN--KLQCID--RDALAGLKSLRIISLHGNDISMIPEGAFAD 286
+ L +Q+ YN +LQ R AL L+ + + + G +
Sbjct: 113 IE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----V-------- 158
Query: 287 LHAITHLAIGGNPLYCDCGLAWLSEWVKRDY-VE---PG------IARCTEPASMRDKL- 335
G G W++ V Y V+ + C P ++ + L
Sbjct: 159 ---------LG------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 336 -LLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRC 384
LL ++ + S I + ++ + L + Y+ C
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHS------IQAELRRLLKSKPYE-NC 246
Score = 34.1 bits (77), Expect = 0.15
Identities = 43/304 (14%), Positives = 86/304 (28%), Gaps = 82/304 (26%)
Query: 99 VDCSQRGL-KEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
+DC + L +E+ P + + I + DGL N ++ + T IE
Sbjct: 311 LDCRPQDLPREVLTTNPR----RL---SIIAESIRDGL-ATWDNWKHVNCDK-LTTIIES 361
Query: 158 --NAFEGENDQGC---LG----DNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVS 208
N E + L + P + ++++D + + V
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLSLIWFDVIKSDVMVVVNKLHKY---- 414
Query: 209 YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLS-------QLILSYNKLQCIDRDALA 261
S + + + I + + KL ++ YN + D
Sbjct: 415 --------SLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFD----- 460
Query: 262 GLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNP--------LYCDCGLAWLSEWV 313
+D+ + H HL +P ++ D +L + +
Sbjct: 461 -----------SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLEQKI 507
Query: 314 KRDYVEPGIARCTEPASMRDKLLLTAPASSFQCK------EKVSD--EILSKCNA-CYKS 364
+ D A S+ + L + C V+ + L K S
Sbjct: 508 RHD----STAWNA-SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 365 PCTN 368
T+
Sbjct: 563 KYTD 566
Score = 28.7 bits (63), Expect = 8.4
Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 71/202 (35%)
Query: 110 PKD--IPLYTTELI---LNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT--GIE-DNAFE 161
P IP LI + +++ + + L L++ + + ++ I + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYS--LVEKQPKESTISIPSIYLELKVK 438
Query: 162 GENDQGC---LGDNYCPPKCTCTVRVL-------FYDGRAGECYIA-----------VEL 200
EN+ + D+Y PK + ++ FY +I + L
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY------SHIGHHLKNIEHPERMTL 492
Query: 201 FS----------SRIRVSYYVGNYPVSTM--------YRD-----------LSNNQIGFL 231
F +IR N S + Y+ L N + FL
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 232 ----SNFTFSPLSKLSQLILSY 249
N S + L ++ L
Sbjct: 553 PKIEENLICSKYTDLLRIALMA 574
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 47.4 bits (113), Expect = 6e-07
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
+ C+++ C + C+PL + Y C C G+ E + N C +
Sbjct: 5 DPCFRANC--EYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDP--NTQ 60
Query: 419 FNCECAPGYT---GDRCEINIDDCLS-HKCENNATCVDLIQAYECRCAPGFQG 467
+CEC GY G C +ID+C + C C +L +EC C P
Sbjct: 61 ASCECPEGYILDDGFICT-DIDECENGGFCS--GVCHNLPGTFECICGPDSAL 110
Score = 43.1 bits (102), Expect = 2e-05
Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
+D C+ C C+ L++ + C CA G+ E + ++ A C Q
Sbjct: 4 VDPCFRANC--EYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQ- 60
Query: 457 YECRCAPGFQGEFCQTKTPFCAGEYNPCRNG----ARCLDHFSHYTCECTPGF 505
C C G+ + C + C NG C + + C C P
Sbjct: 61 ASCECPEGYILDDGFI----CTD-IDECENGGFCSGVCHNLPGTFECICGPDS 108
Score = 30.8 bits (70), Expect = 0.40
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 497 YTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFV---GKFCEIAPF 553
Y C C GF+ + + + C +C+C ++ G C
Sbjct: 24 YLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QASCECPEGYILDDGFICT---- 78
Query: 554 VAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGY 591
C++ +G+C G+ + C C P
Sbjct: 79 ------DIDECENGGFCSGVCHNLPGT--FECICGPDS 108
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 50.4 bits (120), Expect = 1e-06
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTP-GYHGQHCEF 395
N C PC +QG+C +YQC CT GY G +C
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 39.6 bits (92), Expect = 0.003
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAP-GYTGDRCEI 434
++ C PC++ G C R+ C+C GY+G C I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 38.5 bits (89), Expect = 0.006
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 481 YNPCRNGARCLDH-FSHYTCECTP-GFSGVNCTV 512
Y PC++ C+ Y C+CT G+SG NCT+
Sbjct: 7 YYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 35.0 bits (80), Expect = 0.080
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 514 VDDCVNHMCQNGGTCVD-GINDYTCKCEG-DFVGKFCEIAPF 553
V+ C + CQ+ G CV G++ Y C C + G C I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 43
Score = 32.3 bits (73), Expect = 0.55
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 436 IDDCLSHKCENNATCVDL-IQAYECRCAP-GFQGEFCQT 472
++ C + C++ CV + Y+C C G+ G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 28.5 bits (63), Expect = 8.3
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 563 PCQHHDCKNGICFQPQGSNDYLCKCAP-GYSGKES 596
PCQH GIC G + Y C C GYSG
Sbjct: 9 PCQH----QGICV-RFGLDRYQCDCTRTGYSGPNC 38
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 50.1 bits (119), Expect = 2e-06
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTP-GYHGQHCEF 395
N C +PC N+G C QY+C CT G++G++C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 38.6 bits (89), Expect = 0.005
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 481 YNPCRNGARCLDH-FSHYTCECTP-GFSGVNCTV 512
NPC+N C+ F Y C+CT GF G NCT
Sbjct: 6 SNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 37.8 bits (87), Expect = 0.009
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAP-GYTGDRCEI 434
+ C NPC+N G C ++ C+C G+ G+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 35.5 bits (81), Expect = 0.049
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 515 DDCVNHMCQNGGTCVD-GINDYTCKCEG-DFVGKFCEIAPF 553
+ C ++ CQN G C+ G + Y C C F G+ C F
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEF 42
Score = 33.2 bits (75), Expect = 0.29
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 437 DDCLSHKCENNATCVDL-IQAYECRCAP-GFQGEFCQT 472
+ C S+ C+N C+ Y+C C GF GE C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 29.7 bits (66), Expect = 3.6
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 563 PCQHHDCKNGICFQPQGSNDYLCKCAP-GYSGK 594
PCQ+ G C G + Y C C G+ G+
Sbjct: 8 PCQN----RGECM-STGFDQYKCDCTRTGFYGE 35
Score = 29.3 bits (65), Expect = 4.8
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 40 PCQHHDCKNGICFQPQGSNDYLCKCAP-GYSG 70
PCQ+ G C G + Y C C G+ G
Sbjct: 8 PCQN----RGECM-STGFDQYKCDCTRTGFYG 34
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 44.0 bits (104), Expect = 2e-06
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 356 SKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEF 395
C + Y C N GVC + Y C C GY G C+
Sbjct: 4 PGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
Score = 41.3 bits (97), Expect = 2e-05
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 399 ACYGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCE 433
+ Y C N G C +E + C C GY+GDRC+
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 32.1 bits (73), Expect = 0.034
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 522 CQNGGTC--VDGINDYTCKCEGDFVGKFCE 549
C NGG C ++ ++ YTC C + G C+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 29.8 bits (67), Expect = 0.25
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 444 CENNATCVDL--IQAYECRCAPGFQGEFCQTKT 474
C N C+ + + +Y C C G+ G+ CQT+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46
Score = 29.0 bits (65), Expect = 0.43
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 482 NPCRNGARC--LDHFSHYTCECTPGFSGVNC 510
C NG C ++ YTC C G+SG C
Sbjct: 12 GYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 29.0 bits (65), Expect = 0.48
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 1 NGGTC--VDGINDYTCKCEGDFVGKFCE 26
NGG C ++ ++ YTC C + G C+
Sbjct: 16 NGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 28.6 bits (64), Expect = 0.59
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 562 SPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK 594
C + G+C + + Y C C GYSG
Sbjct: 12 GYCLN----GGVCMHIESLDSYTCNCVIGYSGD 40
Score = 28.2 bits (63), Expect = 0.81
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 39 SPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 70
C + G+C + + Y C C GYSG
Sbjct: 12 GYCLN----GGVCMHIESLDSYTCNCVIGYSG 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 46.9 bits (112), Expect = 9e-06
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
+L + + + LS L + + L + D + L ++L N + +P
Sbjct: 87 ELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPA 144
Query: 282 GAFADLHAITHLAIGGNP 299
+ A L+ + L+I P
Sbjct: 145 -SIASLNRLRELSIRACP 161
Score = 44.9 bits (107), Expect = 4e-05
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
Query: 222 DLSNNQIGFL-SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
+ + + L L L D L L+ +++ + +P
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELP 120
Query: 281 EGAFADLHAITHLAIGGNPL 300
+ + L + NPL
Sbjct: 121 D-TMQQFAGLETLTLARNPL 139
Score = 42.2 bits (100), Expect = 3e-04
Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 222 DLS-NNQIGFL--------SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
+ ++ L ++ L L L L + ++ + ++A L++L+ + +
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIR 214
Query: 273 GNDISMIPEGAFADLHAITHLAIGGN 298
+ +S + A L + L + G
Sbjct: 215 NSPLSALGP-AIHHLPKLEELDLRGC 239
Score = 38.0 bits (89), Expect = 0.006
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
++ L + P + + ++ + ++ + L L L RN +
Sbjct: 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRA 141
Query: 155 I 155
+
Sbjct: 142 L 142
Score = 35.7 bits (83), Expect = 0.036
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 15/67 (22%)
Query: 100 DCSQRGLKEIPKDIPLYT-----------TELILNDNEIGKIKSDGLFGRLPNLIKLDLR 148
C + L E+P+ + L L I + + L NL L +R
Sbjct: 159 ACPE--LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS--IANLQNLKSLKIR 214
Query: 149 RNQVTGI 155
+ ++ +
Sbjct: 215 NSPLSAL 221
Score = 34.1 bits (79), Expect = 0.12
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 222 DLSN-NQIGFLSNFTFSPLSKLSQLILSYN-KLQCIDRDALAGLKSLRIISLHGNDISMI 279
L + + + L L++L +L L L + +A L + II + + + +
Sbjct: 259 ILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQL 316
Query: 280 PE 281
+
Sbjct: 317 DQ 318
Score = 33.4 bits (77), Expect = 0.20
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 100 DCSQRGLKEIPKDIPLYT--TELILNDN--------EIGKIKSDGLFGRLPNLIKLDLRR 149
++ L+ +P I EL + + + G L NL L L
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 150 NQVT 153
+
Sbjct: 193 TGIR 196
Score = 31.1 bits (71), Expect = 1.1
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 97 TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN 150
+ G++ +P I L + ++ + + LP L +LDLR
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELDLRGC 239
Score = 29.1 bits (66), Expect = 4.0
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 100 DCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGL---FGRLPNLIKLDLRRNQVTG 154
DCS L +P DI T +L L + L +LP + + +
Sbjct: 262 DCSN--LLTLPLDIHRLTQLEKLDLRGCV--NLSR--LPSLIAQLPANCIILVPPHLQAQ 315
Query: 155 IEDN 158
++ +
Sbjct: 316 LDQH 319
Score = 29.1 bits (66), Expect = 4.6
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 100 DCSQRGLKEIPKDI----PLYTTELILND-NEIGKI-KSDGLFGRLPNLIKLDLRRNQ 151
C+ L+ P PL LIL D + + + RL L KLDLR
Sbjct: 238 GCTA--LRNYPPIFGGRAPL--KRLILKDCSNLLTLPLD---IHRLTQLEKLDLRGCV 288
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 41.7 bits (98), Expect = 1e-05
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 356 SKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEF 395
S+C + C + GVC + +Y C C GY G+ C++
Sbjct: 4 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 44
Score = 39.4 bits (92), Expect = 9e-05
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 398 DACYGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCE 433
+ C + G C +E ++ C C GY G+RC+
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 31.7 bits (72), Expect = 0.059
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 522 CQNGGTC--VDGINDYTCKCEGDFVGKFCE 549
C + G C ++ ++ Y C C ++G+ C+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 29.0 bits (65), Expect = 0.53
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 1 NGGTC--VDGINDYTCKCEGDFVGKFCE 26
+ G C ++ ++ Y C C ++G+ C+
Sbjct: 16 HDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 28.7 bits (64), Expect = 0.71
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 444 CENNATC--VDLIQAYECRCAPGFQGEFCQTKT 474
C ++ C ++ + Y C C G+ GE CQ +
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 46
Score = 27.5 bits (61), Expect = 1.6
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 482 NPCRNGARC--LDHFSHYTCECTPGFSGVNC 510
C + C ++ Y C C G+ G C
Sbjct: 12 GYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
Score = 26.7 bits (59), Expect = 3.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 572 GICFQPQGSNDYLCKCAPGYSGK 594
G+C + + Y C C GY G+
Sbjct: 18 GVCMYIEALDKYACNCVVGYIGE 40
Score = 26.7 bits (59), Expect = 3.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 49 GICFQPQGSNDYLCKCAPGYSG 70
G+C + + Y C C GY G
Sbjct: 18 GVCMYIEALDKYACNCVVGYIG 39
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 42.3 bits (100), Expect = 3e-05
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYT--GDRCEINID 437
Y T + Q + C N S C L + + C C G+ R +ID
Sbjct: 13 YDIPTTENLYFQGAMG-TNECLDNNGGCSYVCNDL-KIGYECLCPDGFQLVAQRRCEDID 70
Query: 438 DCLS-HKCENNATCVDLIQAYECRCAPGFQ 466
+C C CV+L Y+C+C GFQ
Sbjct: 71 ECQDPDTCS--QLCVNLEGGYKCQCEEGFQ 98
Score = 37.3 bits (87), Expect = 0.002
Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 446 NNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGF 505
+ + Y+ + T C C C D Y C C GF
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSY--VCNDLKIGYECLCPDGF 58
Query: 506 SGVN---CTVNVDDC-VNHMCQNGGTCVDGINDYTCKCEGDFV----GKFCE 549
V C ++D+C C CV+ Y C+CE F K C+
Sbjct: 59 QLVAQRRC-EDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 35.8 bits (83), Expect = 0.006
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 417 GRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPF 476
++ ++CL + + C DL YEC C GFQ +
Sbjct: 11 SDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDI 69
Query: 477 --CAGEYNPCRNGARCLDHFSHYTCECTPGF 505
C + + C C++ Y C+C GF
Sbjct: 70 DECQ-DPDTC--SQLCVNLEGGYKCQCEEGF 97
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 43.1 bits (101), Expect = 2e-04
Identities = 49/268 (18%), Positives = 71/268 (26%), Gaps = 39/268 (14%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCR-----NSGTCK 412
+ C N+ V C C G +CE +D + P R NS CK
Sbjct: 260 ASECAPVDGVNEEVEGM---VHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACK 316
Query: 413 LLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA----YECRCAPGFQGE 468
+ C N+ + C++N + Q ++
Sbjct: 317 KCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPN 376
Query: 469 FCQTKTPFCAGEYNPCRNGARCLDHFSHYT--CECTPGFSGVNCT-----------VNVD 515
C+ T AG N C C G C +
Sbjct: 377 LCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPY 436
Query: 516 DCVNHMCQNGGTCVDGI----NDYTCKCEGDFVGKFCEI-APFVAMMYPQTSPCQHHDC- 569
C + C GT G C C+ G+ C+ P + C+ DC
Sbjct: 437 GCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCD 496
Query: 570 ----KNGICFQPQGSNDYLCKCAPGYSG 593
N C + G C C P G
Sbjct: 497 LGGALNNSCSEDSGQ----CSCLPHMIG 520
Score = 41.6 bits (97), Expect = 6e-04
Identities = 33/170 (19%), Positives = 39/170 (22%), Gaps = 20/170 (11%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSG---TCKLL 414
C C P Q + + CT G + D CKL
Sbjct: 357 CEQCK--PFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLH 414
Query: 415 EEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAY----ECRCAPGFQGEFC 470
EG C G+ E + C S C T C C G+ C
Sbjct: 415 VEGERCDVCKEGFYDLSAE-DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRC 473
Query: 471 QTKTPFCAGEYNPCRNGARCLDHFSHYT----------CECTPGFSGVNC 510
P G N C C C P G C
Sbjct: 474 DQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQC 523
Score = 37.0 bits (85), Expect = 0.019
Identities = 28/153 (18%), Positives = 42/153 (27%), Gaps = 35/153 (22%)
Query: 346 CKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPC 405
C+ D S+ + QCRC G+ C+ + Y
Sbjct: 378 CEPCTCDPAGSENGGICD--GYTDFSVGLIAG---QCRCKLHVEGERCDVCKEGFYDLSA 432
Query: 406 RNSGTCKLLEEGRF--------------NCECAPGYTGDRCE----------INIDDCLS 441
+ CK C C TG RC+ ++D C
Sbjct: 433 EDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRP 492
Query: 442 HKCEN----NATCVDLIQAYECRCAPGFQGEFC 470
C+ N +C + +C C P G C
Sbjct: 493 CDCDLGGALNNSCSEDSG--QCSCLPHMIGRQC 523
Score = 30.4 bits (68), Expect = 1.9
Identities = 17/87 (19%), Positives = 22/87 (25%), Gaps = 14/87 (16%)
Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSG--TCKLLE 415
C C+ C C GQ C+ + +G G C
Sbjct: 441 CACNPLGTIPGGNPCDS---ETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDL 497
Query: 416 EGRFN---------CECAPGYTGDRCE 433
G N C C P G +C
Sbjct: 498 GGALNNSCSEDSGQCSCLPHMIGRQCN 524
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 38.0 bits (88), Expect = 3e-04
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 398 DACYGNPCRNSGTC---KLLEEGRFNCECAPGYTGDRCE 433
+ C N C K+ + ++CECA G+ G RCE
Sbjct: 9 ETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 33.0 bits (75), Expect = 0.020
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 357 KCNACY-KSPCTNQGVCEPLPERQ---YQCRCTPGYHGQHCEF 395
KC + C N C + Y C C G+ GQ CE+
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 29.1 bits (65), Expect = 0.52
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 444 CENNATCVDLIQA----YECRCAPGFQGEFCQTKTP 475
C N+A C + A Y C CA GF G+ C+ K
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEI 51
Score = 26.8 bits (59), Expect = 3.7
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 522 CQNGGTC----VDGINDYTCKCEGDFVGKFCE 549
C N C + + Y+C+C F+G+ CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 26.4 bits (58), Expect = 4.7
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 482 NPCRNGARCLDHF----SHYTCECTPGFSGVNC 510
C N A C Y+CEC GF G C
Sbjct: 14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 42.1 bits (100), Expect = 4e-04
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQC-IDRDALAGLKSLRIISLHGNDIS-M 278
DLS N + G S F ++ L+ N L + + + K+L + L N I
Sbjct: 203 DLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGT 259
Query: 279 IPEGAFADLHAITHLAIGGNPL 300
+P+G L + L + N L
Sbjct: 260 LPQG-LTQLKFLHSLNVSFNNL 280
Score = 40.2 bits (95), Expect = 0.001
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 222 DLSNNQI-----GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI 276
+++ + FLS + L L SYN L +++ L +L I+ GN I
Sbjct: 107 YITHTNVSGAIPDFLSQ-----IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 277 S-MIPE--GAFADLHAITHLAIGGNPL 300
S IP+ G+F+ L T + I N L
Sbjct: 162 SGAIPDSYGSFSKL--FTSMTISRNRL 186
Score = 38.3 bits (90), Expect = 0.005
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MIPEGAFADLHAITHLAIGG 297
L++L L +++ + D L+ +K+L + N +S +P + + L + + G
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDG 158
Query: 298 NPL 300
N +
Sbjct: 159 NRI 161
Score = 34.8 bits (81), Expect = 0.064
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 25/66 (37%)
Query: 222 DLSNNQI-----GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAG-------LKSLRII 269
DL NN+I L+ L L L +S+N L G L+ +
Sbjct: 250 DLRNNRIYGTLPQGLTQ-----LKFLHSLNVSFNNLC--------GEIPQGGNLQRFDVS 296
Query: 270 SLHGND 275
+ N
Sbjct: 297 AYANNK 302
Score = 34.0 bits (79), Expect = 0.12
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG 154
L + N + G + LPNL+ + N+++G
Sbjct: 128 VTLDFSYNALSGTLPPS--ISSLPNLVGITFDGNRISG 163
Score = 29.8 bits (68), Expect = 2.3
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 104 RGLKEIPKDIPL--YTTELIL-NDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG 154
IP + Y L + N + G I +L L L + V+G
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSG 115
Score = 29.8 bits (68), Expect = 2.3
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 108 EIPKDIPLYT--TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG 154
IP I T L + + G I ++ L+ LD N ++G
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSG 139
Score = 29.0 bits (66), Expect = 4.5
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG 154
++ L N + + G NL LDLR N++ G
Sbjct: 224 QKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRIYG 258
Score = 28.7 bits (65), Expect = 5.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 108 EIPKDI----PLYTTELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG 154
IP L T + ++ N + GKI F L NL +DL RN + G
Sbjct: 164 AIPDSYGSFSKL-FTSMTISRNRLTGKIPPT--FANL-NLAFVDLSRNMLEG 211
Score = 28.3 bits (64), Expect = 8.1
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 24/91 (26%)
Query: 222 DLSNNQI-----GFLSNFTFSPLSKLSQLILSYNKL-----QCIDRDALAGLKSL-RIIS 270
D S N + +S+ L L + N++ L ++
Sbjct: 131 DFSYNALSGTLPPSISS-----LPNLVGITFDGNRISGAIPDSY-----GSFSKLFTSMT 180
Query: 271 LHGNDIS-MIPEGAFADLHAITHLAIGGNPL 300
+ N ++ IP FA+L+ + + + N L
Sbjct: 181 ISRNRLTGKIPP-TFANLN-LAFVDLSRNML 209
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 38.4 bits (90), Expect = 5e-04
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 393 CEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE----INIDDCLSHKCE-NN 447
C D C C N+ G F C+C GY ++ID+C
Sbjct: 6 CRISPDLCGRGQCVNT-------PGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRG 58
Query: 448 ATCVDLIQAYECRCAPGFQ 466
C + +Y C C PG Q
Sbjct: 59 GVCHNTEGSYRCECPPGHQ 77
Score = 36.9 bits (86), Expect = 0.002
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 430 DRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPF----CAGEYNPCR 485
D C I+ D C CV+ +EC+C G++ F K C + CR
Sbjct: 4 DECRISPDLC------GRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR 57
Query: 486 NGARCLDHFSHYTCECTPGF 505
G C + Y CEC PG
Sbjct: 58 GG-VCHNTEGSYRCECPPGH 76
Score = 30.3 bits (69), Expect = 0.31
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 380 YQCRCTPGYHGQHCEFM----IDACYGNPCR-NSGTCKLLEEGRFNCECAPGYTGD 430
++C+C GY ID C +P G C E G + CEC PG+
Sbjct: 25 FECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTE-GSYRCECPPGHQLS 79
Score = 27.3 bits (61), Expect = 4.0
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 27/90 (30%)
Query: 510 CTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQ---- 565
C ++ D C C N D+ CKC+ + + C
Sbjct: 6 CRISPDLCGRGQCVN------TPGDFECKCDEGYES-----------GFMMMKNCMDIDE 48
Query: 566 ----HHDCKNGICFQPQGSNDYLCKCAPGY 591
C+ G+C +GS Y C+C PG+
Sbjct: 49 CQRDPLLCRGGVCHNTEGS--YRCECPPGH 76
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 41.6 bits (97), Expect = 7e-04
Identities = 24/167 (14%), Positives = 41/167 (24%), Gaps = 18/167 (10%)
Query: 384 CTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHK 443
P + C+ + C + A +G C+
Sbjct: 229 TDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTH 288
Query: 444 CEN--NATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCEC 501
N C +L + Y CR G + +C T EY C+ + C+
Sbjct: 289 NRTPENFPCKNLDENY-CRNPDGKRAPWCHTTNSQVRWEY--CKIPS----------CDS 335
Query: 502 TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFC 548
+P + + + Y GK C
Sbjct: 336 SPVSTEQLAPTAPPELTPVVQD---CYHGDGQSYRGTSSTTTTGKKC 379
Score = 37.7 bits (87), Expect = 0.013
Identities = 31/162 (19%), Positives = 44/162 (27%), Gaps = 25/162 (15%)
Query: 374 PLPERQYQCRCTPGYH-GQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGD-- 430
P +R C T ++C+ I +C +P Y GD
Sbjct: 308 PDGKRAPWCHTTNSQVRWEYCK--IPSCDSSPVSTEQLAPT-APPELTPVVQDCYHGDGQ 364
Query: 431 --RCEINID----DCLSHKC---------ENNATCVDLIQAYECRCAPGFQGEFCQTKTP 475
R + C S N L Y CR +G +C T P
Sbjct: 365 SYRGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNY-CRNPDADKGPWCFTTDP 423
Query: 476 FCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDC 517
EY C N +C + T + +DC
Sbjct: 424 SVRWEY--C-NLKKCSGTEASVVAPPPVVLLPDVETPSEEDC 462
Score = 36.6 bits (84), Expect = 0.023
Identities = 22/218 (10%), Positives = 33/218 (15%), Gaps = 27/218 (12%)
Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRF 419
C Y+ G C+ R
Sbjct: 244 TTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLDEN 303
Query: 420 NCECAPGYTGDRC----------EINIDDCLSHKCENNATC---------------VDLI 454
C G C I C S
Sbjct: 304 YCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDG 363
Query: 455 QAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNV 514
Q+Y + G+ CQ+ + + + C G C
Sbjct: 364 QSYRGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAG-LTMNYCRNPDADKGPWCFTTD 422
Query: 515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAP 552
C N C + +
Sbjct: 423 PSVRWEYC-NLKKCSGTEASVVAPPPVVLLPDVETPSE 459
Score = 36.6 bits (84), Expect = 0.029
Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 26/206 (12%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKC--ENNATCVDLIQ 455
D C C C ++ + + +G C+ + +L +
Sbjct: 155 DYCDILECEE--ECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKK 212
Query: 456 AYECRCAPGFQGEFCQTKTPFCAGEY----------NPCRNGARCL-DHFSHYTCECTPG 504
Y CR +C T P E +CL +Y
Sbjct: 213 NY-CRNPDRELRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVT 271
Query: 505 FSGVNCTVNVDDCVNHMCQNGGTCVD-GINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSP 563
SG C + + +++ C+ +C + S
Sbjct: 272 VSGHTCQHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWC---------HTTNSQ 322
Query: 564 CQHHDCKNGICFQPQGSNDYLCKCAP 589
+ CK C S + L AP
Sbjct: 323 VRWEYCKIPSCDSSPVSTEQLAPTAP 348
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 41.5 bits (98), Expect = 7e-04
Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 43/178 (24%)
Query: 118 TELILNDNEIGKIKSDG------LFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD 171
+ L+D + P L +L+LR N+ + D C+
Sbjct: 31 QVVRLDDCGLT---EARCKDISSALRVNPALAELNLRSNE---LGDVGVH------CVLQ 78
Query: 172 NYCPPKCTCTVRVLFYDGRAGECYI---AVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
+C ++ L C + + SS +R + + LS+N +
Sbjct: 79 --GLQTPSCKIQKL----SLQNCCLTGAGCGVLSSTLRT-----LPTLQEL--HLSDNLL 125
Query: 229 G-----FLSNFTFSPLSKLSQLILSYNKLQCIDR----DALAGLKSLRIISLHGNDIS 277
G L P +L +L L Y L L + +++ NDI+
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183
Score = 39.6 bits (93), Expect = 0.002
Identities = 28/206 (13%), Positives = 52/206 (25%), Gaps = 48/206 (23%)
Query: 118 TELILNDNEIGKIKSDG------LFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD 171
+L L + + + P+ +L + N I + L
Sbjct: 145 EKLQLEYCSLS---AASCEPLASVLRAKPDFKELTVSNND---INEAGVR------VLCQ 192
Query: 172 NYCPPKCTCTVRVLFYDGRAGECYI---AVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
C L C + + S L +N++
Sbjct: 193 GLKDSPCQLEALKL------ESCGVTSDNCRDLCGIVASK-------ASLRELALGSNKL 239
Query: 229 G-----FLSNFTFSPLSKLSQLILSYNKLQCID----RDALAGLKSLRIISLHGNDISM- 278
G L P S+L L + + L +SL+ +SL GN++
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299
Query: 279 ----IPEGAFADLHAITHLAIGGNPL 300
+ E + L +
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSF 325
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 222 DLSNNQIG-----FLSNFTFSPLSKLSQLILSYNKLQ---CID-RDALAGLKSLRIISLH 272
+SNN++ L P S L L L+ + C L SLR + L
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406
Query: 273 GNDISMIPEGA 283
N + G
Sbjct: 407 NNCLG--DAGI 415
Score = 37.6 bits (88), Expect = 0.009
Identities = 27/176 (15%), Positives = 46/176 (26%), Gaps = 39/176 (22%)
Query: 118 TELILNDNEIGKIKSDGLFGRL---PNLIKLDLRRNQVTGIEDNAFEGENDQGC--LGDN 172
L L + L G + +L +L L N++ D G L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG-----------DVGMAELCPG 250
Query: 173 YCPPKCTCTVRVLFYD--GRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIG- 229
P ++ G + L + S L+ N++G
Sbjct: 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE------------SLKELSLAGNELGD 298
Query: 230 ----FLSNFTFSPLSKLSQLILSYNKLQ---CID-RDALAGLKSLRIISLHGNDIS 277
L P +L L + C LA + L + + N +
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354
Score = 35.7 bits (83), Expect = 0.039
Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 15/104 (14%)
Query: 222 DLSNNQIG-----FLSNFTFSPLSKLSQLILSYNKL---QCID-RDALAGLKSLRIISLH 272
+SNN I L +L L L + C D +A SLR ++L
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235
Query: 273 GNDIS-----MIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSE 311
N + + G + L I + G L
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCR 278
Score = 30.7 bits (70), Expect = 1.7
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 222 DLSNNQIGFLSNFTFSP-LSKLSQLILSYNKLQCIDRDA------LAGLKSLRIISLHGN 274
D+ ++ P L + + L L + L +L ++L N
Sbjct: 9 DIQCEELSDARWAELLPLLQQCQVVRLDDCGLT--EARCKDISSALRVNPALAELNLRSN 66
Query: 275 DISMIPEGA 283
++ G
Sbjct: 67 ELG--DVGV 73
Score = 29.9 bits (68), Expect = 2.7
Identities = 35/172 (20%), Positives = 46/172 (26%), Gaps = 73/172 (42%)
Query: 118 TELILNDNEIG----KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC----- 168
EL +++N + + GL L L L V+ D C
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS-----------DSSCSSLAA 392
Query: 169 -LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
L N ++R L DLSNN
Sbjct: 393 TLLAN-------HSLREL------------------------------------DLSNNC 409
Query: 228 IG-----FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGL----KSLRIIS 270
+G L P L QL+L D L L SLR+IS
Sbjct: 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 37.2 bits (87), Expect = 0.001
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCA-----GEYNPCRNGA 488
+++D+C + C++ +Y C C G+ + C NPC NG
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE-----CVDTDECSVGNPCGNG- 56
Query: 489 RCLDHFSHYTCECTPGFSG 507
C + + C C GF
Sbjct: 57 TCKNVIGGFECTCEEGFEP 75
Score = 34.9 bits (81), Expect = 0.009
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 380 YQCRCTPGY--HGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGD 430
Y+C C GY G C D C +GTCK + G F C C G+
Sbjct: 26 YRCECPFGYILAGNECV-DTDECSVGNPCGNGTCKNVI-GGFECTCEEGFEPG 76
Score = 27.9 bits (63), Expect = 2.4
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 512 VNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFV--GKFC----EIAPFVAMMYPQTSPCQ 565
V++D+C G C++ Y C+C ++ G C E + +PC
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECS--------VGNPCG 54
Query: 566 HHDCKNGICFQPQGSNDYLCKCAPGYSG 593
+ CKN I G + C C G+
Sbjct: 55 NGTCKNVI-----GG--FECTCEEGFEP 75
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 40.8 bits (95), Expect = 0.001
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 507 GVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH 566
+++ D ++ +N T G N++ + D F + P + + P+ + ++
Sbjct: 296 QKQANISIVDIDSNQEENVATSSSG-NNFGLDLKADDKIYFGGL-PTLRNLRPEVNVKKY 353
Query: 567 HDCKNGICFQPQGSNDYLCKCAPGYSG 593
C I Y +P Y G
Sbjct: 354 SGCLKDIEIS---RTPYNILSSPDYVG 377
Score = 36.6 bits (84), Expect = 0.026
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 10/68 (14%)
Query: 29 PFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAAC 88
P + + P+ + ++ C I Y +P Y GV + C ++
Sbjct: 339 PTLRNLRPEVNVKKYSGCLKDIEIS---RTPYNILSSPDYVGVTKG-------CSLENVY 388
Query: 89 PSGCSCDG 96
G
Sbjct: 389 TVSFPKPG 396
Score = 33.9 bits (77), Expect = 0.15
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 184 VLFYDGRAGEC-YIAVELFSSRIRVSYYVGNYPVSTMYRD--LSNNQ 227
+LFY G A ++A+E+ ++ + VG+ Y D + ++
Sbjct: 47 LLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSY 93
Score = 33.1 bits (75), Expect = 0.29
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 184 VLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
++ G+ Y A+ L R+ V G + + N+
Sbjct: 423 IILLGSGGGQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRF 467
Score = 31.6 bits (71), Expect = 0.80
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 184 VLFYDGRAGEC-YIAVELFSSRIRVSYYVGNYPVS 217
+L Y +++VEL ++VSY +G+ S
Sbjct: 241 LLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTS 275
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 36.6 bits (84), Expect = 0.001
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 355 LSKCNACYKSPCTNQGVCEPLPE----RQYQCRCTPGYHGQHCE 394
L KC K+ C N G C + + +Y C+C PG+ G C
Sbjct: 3 LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 34.3 bits (78), Expect = 0.008
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 389 HGQHCEFMIDACYGNPCRNSGTCKLLEE----GRFNCECAPGYTGDRCE 433
H C C N G C ++++ R+ C+C PG+TG RC
Sbjct: 2 HLVKC----AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 28.2 bits (62), Expect = 1.5
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 515 DDCVNHMCQNGGTC-----VDGINDYTCKCEGDFVGKFCE 549
+ C NGG C + + Y CKC+ F G C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 27.8 bits (61), Expect = 1.8
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 480 EYNPCRNGARC-----LDHFSHYTCECTPGFSGVNCTVNV 514
E C NG C L + S Y C+C PGF+G CT NV
Sbjct: 10 EKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
Score = 26.6 bits (58), Expect = 5.2
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 437 DDCLSHKCENNATC-----VDLIQAYECRCAPGFQGEFCQTKTP 475
+ C N C + Y C+C PGF G C P
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVP 50
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 38.6 bits (90), Expect = 0.001
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
+C C+ G C Y C C GY+G C+F
Sbjct: 121 SCQPWSCSGHGECVE-IINNYTCNCDVGYYGPQCQF 155
Score = 35.9 bits (83), Expect = 0.015
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 468 EFCQTKTPF-C---AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNC 510
+ C C + + C C++ ++YTC C G+ G C
Sbjct: 107 DACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 35.2 bits (81), Expect = 0.025
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 432 CEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
C C C + CV++I Y C C G+ G CQ
Sbjct: 117 CYT--ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 35.2 bits (81), Expect = 0.028
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 517 CVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
C C G CV+ IN+YTC C+ + G C+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 34.0 bits (78), Expect = 0.063
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 393 CEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
C +C C G C + + C C GY G +C+
Sbjct: 117 CY--TASCQPWSCSGHGEC-VEIINNYTCNCDVGYYGPQCQ 154
Score = 33.2 bits (76), Expect = 0.095
Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 16/85 (18%)
Query: 509 NCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHD 568
N N +DCV + ND C + C A Q C H
Sbjct: 82 NNKKNKEDCV-EIYIKRNKDAGKWNDDACHKLKAAL---CYTAS------CQPWSCSGH- 130
Query: 569 CKNGICFQPQGSNDYLCKCAPGYSG 593
G C + N+Y C C GY G
Sbjct: 131 ---GEC--VEIINNYTCNCDVGYYG 150
Score = 30.9 bits (70), Expect = 0.65
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCE 26
G CV+ IN+YTC C+ + G C+
Sbjct: 129 GHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 27.9 bits (62), Expect = 5.9
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 10 NDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYS 69
ND C + C A Q C H G C + N+Y C C GY
Sbjct: 105 NDDACHKLKAAL---CYTAS------CQPWSCSGH----GEC--VEIINNYTCNCDVGYY 149
Query: 70 G 70
G
Sbjct: 150 G 150
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 40.2 bits (93), Expect = 0.002
Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 5/140 (3%)
Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQ--GEFCQTKTPFCAGEYNPCRNGARCLDHF 494
++CL + + C DL YEC C GFQ + C +P C++
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 57
Query: 495 SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFV 554
Y C+C GF T + + + E + +
Sbjct: 58 GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVAL 117
Query: 555 AMMYPQTSPCQHHDCKNGIC 574
+ IC
Sbjct: 118 DTEVASNRIYWSDLSQRMIC 137
Score = 34.8 bits (79), Expect = 0.076
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 10/129 (7%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCK---LLE 415
N C + VC L Y+C C G+ D + C++ TC +
Sbjct: 1 NECLDNNGGCSHVCNDLKIG-YECLCPDGFQLVAQRRCEDI---DECQDPDTCSQLCVNL 56
Query: 416 EGRFNCECAPGYTGD---RCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
EG + C+C G+ D + + N + +
Sbjct: 57 EGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Query: 473 KTPFCAGEY 481
A
Sbjct: 117 LDTEVASNR 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 40.1 bits (94), Expect = 0.002
Identities = 37/231 (16%), Positives = 64/231 (27%), Gaps = 52/231 (22%)
Query: 111 KDIPLYTTELILNDNEIG----KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ 166
+ P T L L+ N +G L N+ L+L N ++ +
Sbjct: 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS-----------YK 95
Query: 167 GC--LGDNYCPPKCTCTVRVLFYDGRAGECYI---AVELFSSRIRVSYYVGNYPVSTMYR 221
L T TV L G + F ++++
Sbjct: 96 SSDELVKTLAAIPFTITVLDL------GWNDFSSKSSSEFKQAFSNL----PASITSL-- 143
Query: 222 DLSNNQIG-----FLSNFTFSPLSKLSQLILSYNKLQCIDRDALA-GLK----SLRIISL 271
+L N +G L + + ++ L L N L + LA L S+ + L
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203
Query: 272 HGNDISMIPEGAFADLHA-------ITHLAIGGNPLYCDCGLAWLSEWVKR 315
N + + + + L + N L L L
Sbjct: 204 SANLLG--LKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSLENLKLLKDS 251
Score = 39.3 bits (92), Expect = 0.003
Identities = 27/208 (12%), Positives = 55/208 (26%), Gaps = 50/208 (24%)
Query: 118 TELILNDNEIG----KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC--LGD 171
T L L+ N + L + LDL N + +
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-----------SKSSSEFKQ 131
Query: 172 NYCPPKCTCTVRVLFYDGRAGECYI---AVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
+ ++ L + + + + P + +L N +
Sbjct: 132 AFS--NLPASITSL----NLRGNDLGIKSSDELIQILA------AIPANVNSLNLRGNNL 179
Query: 229 G-----FLSNFTFSPLSKLSQLILSYNKLQCIDRDALA-GLKS----LRIISLHGNDISM 278
L+ F S + ++ L LS N L LA S + ++L N +
Sbjct: 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH- 238
Query: 279 IPEGA------FADLHAITHLAIGGNPL 300
L + + + + +
Sbjct: 239 -GPSLENLKLLKDSLKHLQTVYLDYDIV 265
Score = 37.8 bits (88), Expect = 0.008
Identities = 22/184 (11%), Positives = 45/184 (24%), Gaps = 66/184 (35%)
Query: 118 TELILNDNEIG----KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY 173
L L N + + L ++ LDL N + + Y
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG-----------LKSYAELAY 218
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIG---- 229
V L +L N +
Sbjct: 219 IFSSIPNHVVSL------------------------------------NLCLNCLHGPSL 242
Query: 230 -FLSNFTFSPLSKLSQLILSYNKLQCIDRD-------ALAGLKSLRIISLHGNDISMIPE 281
L L L + L Y+ ++ + ++ A ++ + ++ +G +I P
Sbjct: 243 ENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH--PS 299
Query: 282 GAFA 285
+
Sbjct: 300 HSIP 303
Score = 37.8 bits (88), Expect = 0.009
Identities = 37/224 (16%), Positives = 64/224 (28%), Gaps = 51/224 (22%)
Query: 118 TELILNDNEIG----KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC--LGD 171
T L L N+ ++ L+LR N + + L
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG-----------IKSSDELIQ 160
Query: 172 NYCPPKCTCTVRVLFYD----GRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
V L +A L S V+++ DLS N
Sbjct: 161 --ILAAIPANVNSLNLRGNNLASKNCAELAKFLASI---------PASVTSL--DLSANL 207
Query: 228 IG-----FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGL----KSLRIISLHGNDISM 278
+G L+ S + + L L N L + L L K L+ + L + +
Sbjct: 208 LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267
Query: 279 I-PEG------AFADLHAITHLAIGGNPLYCDCGLAWLSEWVKR 315
+ E AF ++ I + G + +S ++
Sbjct: 268 MSKEQCKALGAAFPNIQKIILVDKNGKEI-HPSHSIPISNLIRE 310
Score = 35.1 bits (81), Expect = 0.058
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 20/107 (18%)
Query: 222 DLSNNQIG-----FLSNFTFSPLSKLSQLILSYNKLQCIDRDALA-GLKS----LRIISL 271
DLS N + L + + ++ L LS N L + D L L + + ++L
Sbjct: 28 DLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87
Query: 272 HGNDISMIPEG------AFADLHA-ITHLAIGGNPLYCDCGLAWLSE 311
GN +S + A + IT L +G N + +
Sbjct: 88 SGNFLS--YKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQ 131
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 40.2 bits (93), Expect = 0.002
Identities = 38/228 (16%), Positives = 63/228 (27%), Gaps = 5/228 (2%)
Query: 351 SDEILSKCNACYKSPCT-NQGVCEPLPER-QYQCRCTPGYHGQHCEFMIDACYGNPCR-N 407
SDE C + G C + + C C + N + +
Sbjct: 205 SDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCH 264
Query: 408 SGTCKLLEE-GRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQ 466
SG C L++ +C E ++CL + + C DL YEC C GFQ
Sbjct: 265 SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ 324
Query: 467 GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG 526
+ + +P C++ Y C+C GF T +
Sbjct: 325 LVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT 383
Query: 527 TCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGIC 574
+ + E + + + IC
Sbjct: 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC 431
Score = 32.1 bits (72), Expect = 0.61
Identities = 22/126 (17%), Positives = 34/126 (26%), Gaps = 8/126 (6%)
Query: 420 NCECAPGYTGD-RCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGE-FCQTKTPFC 477
C + RC C+++ C+D + E C G Q + C
Sbjct: 82 GCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLD--GSDEASCPVLTCGPASFQCNSSTC 139
Query: 478 AGEYNPCRNGARCLDHF----SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGIN 533
+ C N C D C+ C++ C + DG
Sbjct: 140 IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGP 199
Query: 534 DYTCKC 539
D K
Sbjct: 200 DCKDKS 205
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 39.7 bits (93), Expect = 0.002
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 18/108 (16%)
Query: 222 DLSNNQIG-----FLSNFTFSPLSKLSQLILSYNKLQCIDRDALA-GLK---SLRIISLH 272
L N +G L + +++ L LS N L L GL S+ +SL
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191
Query: 273 GNDISMIPEGA--FADL----HAITHLAIGGNPLYCDCGLAWLSEWVK 314
+ EG A + L + N LA L+ +
Sbjct: 192 HTGLG--DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA-LARAAR 236
Score = 37.4 bits (87), Expect = 0.010
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 49/186 (26%)
Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC------LGD 171
E+ L ++ L KL L+ N + + C L
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-----------PEACKDLRDLLLH 152
Query: 172 NYCPPKCTCTVRVLFYDGRAGECYI---AVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
+ C + L R + V + + N V+ + L + +
Sbjct: 153 D------QCQITTL----RLSNNPLTAAGVAVLMEGLAG-----NTSVTHL--SLLHTGL 195
Query: 229 G-----FLSNFTFSPLSKLSQLILSYNKLQ---CID-RDALAGLKSLRIISLHGNDISMI 279
G L+ +L +L ++YN + A SL ++ L+ N++S
Sbjct: 196 GDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS-- 252
Query: 280 PEGAFA 285
EG
Sbjct: 253 SEGRQV 258
Score = 32.8 bits (75), Expect = 0.29
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 222 DLSNNQIG-----FLSNFTFSPLSKLSQLILSYNKLQCIDRDALA-GLKSLRIISLHGND 275
+L+ ++ ++ S L ++ L+ +L L R + L N
Sbjct: 78 NLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137
Query: 276 ISMIPEGAFA-------DLHAITHLAIGGNPLYCDCGLAWLSE 311
+ PE D IT L + NPL G+A L E
Sbjct: 138 LG--PEACKDLRDLLLHDQCQITTLRLSNNPL-TAAGVAVLME 177
Score = 32.8 bits (75), Expect = 0.29
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 239 LSKLSQLILSYNKLQCIDRDALA-GLKS----LRIISLHGNDISMIPEGAFA---DLHAI 290
LS L QL L+ ++ + +A L S L ++L + P G
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRA 128
Query: 291 THLAIGGNPLYCDCGLAWLSE 311
L + N L L +
Sbjct: 129 RKLGLQLNSL-GPEACKDLRD 148
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 35.7 bits (82), Expect = 0.002
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 405 CRNSGTC---KLLEEGRFNCECAPGYTGDRCE 433
C N C K+ + ++CECA G+ G RCE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 31.4 bits (71), Expect = 0.074
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 355 LSKCNACY-KSPCTNQGVC---EPLPERQYQCRCTPGYHGQHCEF 395
KC + C N C + Y C C G+ GQ CE+
Sbjct: 4 TYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 28.0 bits (62), Expect = 1.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 444 CENNATCVDLIQA----YECRCAPGFQGEFCQTK 473
C N+A C + A Y C CA GF G+ C+ K
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
Score = 26.0 bits (57), Expect = 5.2
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 522 CQNGGTC----VDGINDYTCKCEGDFVGKFCE 549
C N C + + Y+C+C F+G+ CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 468 EFCQTKTPF-C---AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNC 510
E C K C A C C++ ++YTC+C PGFSG+ C
Sbjct: 107 ERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 36.7 bits (85), Expect = 0.007
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
C N C G CV+ IN+YTCKC+ F G CE
Sbjct: 120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 35.5 bits (82), Expect = 0.016
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 432 CEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
C S C + CV+ I Y C+C PGF G C+
Sbjct: 117 CYTAACTNTS--CSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 35.5 bits (82), Expect = 0.019
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 16/80 (20%)
Query: 516 DCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICF 575
DCV + V ND C + + C A TS H +C I
Sbjct: 89 DCV-EIYIKREKDVGMWNDERCSKKKLAL---CYTAAC-----TNTSCSGHGECVETI-- 137
Query: 576 QPQGSNDYLCKCAPGYSGKE 595
N+Y CKC PG+SG +
Sbjct: 138 -----NNYTCKCDPGFSGLK 152
Score = 35.1 bits (81), Expect = 0.022
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMI 397
AC + C+ G C Y C+C PG+ G CE ++
Sbjct: 121 ACTNTSCSGHGECVETI-NNYTCKCDPGFSGLKCEQIV 157
Score = 34.4 bits (79), Expect = 0.041
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 393 CEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
C AC C G C + + C+C PG++G +CE
Sbjct: 117 CYT--AACTNTSCSGHGEC-VETINNYTCKCDPGFSGLKCE 154
Score = 33.2 bits (76), Expect = 0.11
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCE 26
G CV+ IN+YTCKC+ F G CE
Sbjct: 129 GHGECVETINNYTCKCDPGFSGLKCE 154
Score = 30.9 bits (70), Expect = 0.53
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 15/64 (23%)
Query: 10 NDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYS 69
ND C + + C A TS H +C I N+Y CKC PG+S
Sbjct: 105 NDERCSKKKLAL---CYTAAC-----TNTSCSGHGECVETI-------NNYTCKCDPGFS 149
Query: 70 GVEE 73
G++
Sbjct: 150 GLKC 153
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 38.4 bits (88), Expect = 0.002
Identities = 19/107 (17%), Positives = 25/107 (23%), Gaps = 5/107 (4%)
Query: 336 LLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
+ P ++ C + + TP
Sbjct: 87 TVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTC 146
Query: 396 MIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSH 442
C CRN G C R CEC G+ G CE H
Sbjct: 147 QQAECP-GGCRNGGFCN----ERRICECPDGFHGPHCEGTKHHHHHH 188
Score = 38.0 bits (87), Expect = 0.004
Identities = 14/76 (18%), Positives = 18/76 (23%), Gaps = 10/76 (13%)
Query: 404 PCRNSGTCKLLEEGRFNCECAPGYT-------GDRCEINIDDCLSHKCENNATCVDLIQA 456
PC E + G T + C N C +
Sbjct: 108 PCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCN---ER 164
Query: 457 YECRCAPGFQGEFCQT 472
C C GF G C+
Sbjct: 165 RICECPDGFHGPHCEG 180
Score = 36.4 bits (83), Expect = 0.012
Identities = 20/118 (16%), Positives = 24/118 (20%), Gaps = 18/118 (15%)
Query: 403 NPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCA 462
N + C G + T L
Sbjct: 89 NVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEV---DVIVMNSEGNTI--LXTPQNAIFF 143
Query: 463 PGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNH 520
Q C CRNG C CEC GF G +C +H
Sbjct: 144 KTCQQAECP----------GGCRNGGFCN---ERRICECPDGFHGPHCEGTKHHHHHH 188
Score = 32.6 bits (73), Expect = 0.20
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 484 CRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDF 543
+ + T TP + T +C C+NGG C C+C F
Sbjct: 118 AFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGG-CRNGGFCN---ERRICECPDGF 173
Query: 544 VGKFCEIA 551
G CE
Sbjct: 174 HGPHCEGT 181
Score = 29.5 bits (65), Expect = 2.4
Identities = 15/95 (15%), Positives = 23/95 (24%), Gaps = 26/95 (27%)
Query: 499 CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
C GV V M G T + +
Sbjct: 107 FPCLGXQDGVAAFEV---DVIVMNSEGNTILXTPQNAIFFK------------------T 145
Query: 559 PQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
Q + C G C + + +C+C G+ G
Sbjct: 146 CQQAECPGGCRNGGFCNERR-----ICECPDGFHG 175
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 37.9 bits (88), Expect = 0.003
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDAC 400
+C C+ QG C Y C C PG++G CE++ D
Sbjct: 121 SCQDMSCSKQGECLE-TIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 37.9 bits (88), Expect = 0.003
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 468 EFCQTKTPF-C---AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDC 517
E C K C + + C CL+ +YTC C PGF G C DD
Sbjct: 107 EHCLKKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 37.5 bits (87), Expect = 0.004
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 517 CVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
C + C G C++ I +YTC C F G CE
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 35.9 bits (83), Expect = 0.012
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 393 CEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDC 439
C +C C G C L G + C C PG+ G CE DD
Sbjct: 117 CY--TASCQDMSCSKQGEC-LETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 35.5 bits (82), Expect = 0.017
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 432 CEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
C C C C++ I Y C C PGF G C+
Sbjct: 117 CYT--ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 32.5 bits (74), Expect = 0.21
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCE 26
G C++ I +YTC C F G CE
Sbjct: 129 KQGECLETIGNYTCSCYPGFYGPECE 154
Score = 31.3 bits (71), Expect = 0.43
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 16/85 (18%)
Query: 509 NCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHD 568
N N +DCV + + ND C + + C A Q C
Sbjct: 82 NNKRNNEDCV-EIYIKSPSAPGKWNDEHCLKKKHAL---CYTAS------CQDMSCSKQ- 130
Query: 569 CKNGICFQPQGSNDYLCKCAPGYSG 593
G C + +Y C C PG+ G
Sbjct: 131 ---GEC--LETIGNYTCSCYPGFYG 150
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 39.0 bits (90), Expect = 0.003
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGIN 533
CA + C A C D+ + + C C ++G N V + G I
Sbjct: 8 CANNRHQCSVHAECRDYATGFCCRCVANYTG-NGRQCVAEGSPQRVN--GKVKGRIF 61
Score = 35.5 bits (81), Expect = 0.033
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 441 SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNP--CRNGARCLDHFSHYT 498
H+C +A C D + CRC + G + + + +
Sbjct: 12 RHQCSVHAECRDYATGFCCRCVANYTGN-GRQCVAEGSPQRVNGKVKGRIFVGSSQVPVV 70
Query: 499 CECT 502
E T
Sbjct: 71 FENT 74
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 39.4 bits (92), Expect = 0.003
Identities = 14/118 (11%), Positives = 27/118 (22%), Gaps = 12/118 (10%)
Query: 432 CEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFC---QTKTPFCAGEYNPCR--- 485
+ K + + + C F + + A + C+
Sbjct: 262 SGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLC 321
Query: 486 -NGARCLDHFSHYTCECTPGF-SGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
N RC +T + + N GI+ YT +
Sbjct: 322 TNAVRC----QFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCK 375
Score = 39.1 bits (91), Expect = 0.004
Identities = 16/125 (12%), Positives = 28/125 (22%), Gaps = 17/125 (13%)
Query: 470 CQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGF-SGVNCTVNVDDCVNHMCQNGGTC 528
++ P + + +G C F + D V C
Sbjct: 260 SESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSH--EAC 317
Query: 529 VDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCA 588
+ +C+ P + C K + GS +
Sbjct: 318 QKLCTN-AVRCQFF-------------TYTPAQASCNEGKGKCYLKLSSNGSPTKILHGR 363
Query: 589 PGYSG 593
G SG
Sbjct: 364 GGISG 368
Score = 31.4 bits (71), Expect = 1.1
Identities = 13/152 (8%), Positives = 34/152 (22%), Gaps = 22/152 (14%)
Query: 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCEC 423
+ + + E G + + + + + C
Sbjct: 240 TFFSQEWPKESQRNLCLLKTSESGLPSTRIK-------KSKALSGFSLQSCRHS-IPVFC 291
Query: 424 APGYTGDRCEINIDDCLSHK-----CENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCA 478
+ D + + + C+ T Q + A C C
Sbjct: 292 HSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQA----SCNEGKGKCY 347
Query: 479 GEYNPCRNGARCLDHFSHYTCECTPGFSGVNC 510
+ + + + L + G++ C
Sbjct: 348 LKLSSNGSPTKIL-----HGRGGISGYTLRLC 374
Score = 28.3 bits (63), Expect = 8.8
Identities = 11/93 (11%), Positives = 20/93 (21%), Gaps = 23/93 (24%)
Query: 1 NGGTCVDGINDYTCKCEGDFVGKFCEI-----------APFVAMMYPQTSPCQH--HDCK 47
+G + + C F + + CQ +
Sbjct: 276 SGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPA 335
Query: 48 NGICFQPQ----------GSNDYLCKCAPGYSG 70
C + + GS + G SG
Sbjct: 336 QASCNEGKGKCYLKLSSNGSPTKILHGRGGISG 368
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 38.6 bits (89), Expect = 0.005
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 8/142 (5%)
Query: 436 IDDCLSHKCENNATCVDLIQAYECRCAPGFQ----GEFCQTKTPFCAGEYNPCRNGARCL 491
++C + C + A +C C G++ G CQ CA E C G C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNE-CA-EEGYCSQG--CT 58
Query: 492 DHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA 551
+ + C C G+ + +D + E + E A
Sbjct: 59 NSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 118
Query: 552 PFVAMMYPQTSPCQHHDCKNGI 573
+ + + + I
Sbjct: 119 IALDFHHRRELVFWSDVTLDRI 140
Score = 36.7 bits (84), Expect = 0.018
Identities = 22/106 (20%), Positives = 28/106 (26%), Gaps = 6/106 (5%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCK---LLE 415
C + C+ + QC C GY N C G C
Sbjct: 4 ENCNVNNGGCAQKCQMIR-GAVQCTCHTGYRLTEDGRTCQDV--NECAEEGYCSQGCTNS 60
Query: 416 EGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRC 461
EG F C C GY + A +D+ Q R
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRS 106
Score = 28.2 bits (62), Expect = 9.3
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 11/84 (13%)
Query: 1 NGG---TCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGS 57
NGG C C C + + C C +G+
Sbjct: 10 NGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ------GCTNSEGA 63
Query: 58 NDYLCKCAPGYSGVEEFRTRYAGD 81
+ C C GY + R+ A
Sbjct: 64 --FQCWCEAGYELRPDRRSCKALG 85
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 38.7 bits (89), Expect = 0.006
Identities = 37/228 (16%), Positives = 63/228 (27%), Gaps = 5/228 (2%)
Query: 351 SDEILSKCNAC--YKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCR-N 407
SDE C + C++ + + C C + N + +
Sbjct: 223 SDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCH 282
Query: 408 SGTCKLLEEGR-FNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQ 466
SG C L++ +C E ++CL + + C DL YEC C GFQ
Sbjct: 283 SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ 342
Query: 467 GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG 526
+ +P C++ Y C+C GF T +
Sbjct: 343 LVAQRR-CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT 401
Query: 527 TCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGIC 574
+ + E + + + IC
Sbjct: 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC 449
Score = 35.6 bits (81), Expect = 0.060
Identities = 33/178 (18%), Positives = 47/178 (26%), Gaps = 21/178 (11%)
Query: 420 NCECAPGYTGD-RCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGE-FCQTKTPFC 477
C + RC C+++ C+D + E C G Q + C
Sbjct: 100 GCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLD--GSDEASCPVLTCGPASFQCNSSTC 157
Query: 478 AGEYNPCRNGARCLDH--FSHYTCECTPGF--SGVNCTVNVDDCVNHMCQNGGTCVDGIN 533
+ C N C D C F C+ C++ C + DG
Sbjct: 158 IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGP 217
Query: 534 DYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGY 591
D CK + D C T C +G C D C
Sbjct: 218 D--CKDKSDEEN--CA---------VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMS 262
Score = 29.0 bits (64), Expect = 5.8
Identities = 21/246 (8%), Positives = 45/246 (18%), Gaps = 31/246 (12%)
Query: 384 CTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHK 443
C ++C C + + +C C +K
Sbjct: 219 CKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNK 278
Query: 444 CE-NNATCVDLIQ-----------------------------AYECRCAPGFQGEFCQTK 473
+ ++ C+ L + C G C
Sbjct: 279 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCP 338
Query: 474 TPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGIN 533
F C + C D + C G C ++ +
Sbjct: 339 DGFQLVAQRRCEDIDECQDPDTCSQL-CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY 397
Query: 534 DYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
+ + + + + + S +C +
Sbjct: 398 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 457
Query: 594 KESLLQ 599
S
Sbjct: 458 GVSSYD 463
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 38.8 bits (89), Expect = 0.006
Identities = 24/142 (16%), Positives = 38/142 (26%), Gaps = 20/142 (14%)
Query: 376 PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE-- 433
+ RC R S + + C +C
Sbjct: 18 AGSVQRARCASRCLSLQIT-----------RISAFFQHFQNNGSLVWCQNHKQCSKCLEP 66
Query: 434 -INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLD 492
D H+C++ + ++YEC + F K C A C++
Sbjct: 67 CKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVE 126
Query: 493 HFSHYTCECTPGFSGV-NCTVN 513
+CE SGV C N
Sbjct: 127 -----SCEVDNECSGVKKCCSN 143
Score = 30.3 bits (67), Expect = 2.2
Identities = 23/138 (16%), Positives = 35/138 (25%), Gaps = 29/138 (21%)
Query: 421 CECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE 480
A RC CLS + + Q +CQ C+
Sbjct: 15 SLSAGSVQRARCASR---CLSLQITRISAFFQHFQNNGSLV-------WCQN-HKQCSKC 63
Query: 481 YNPCRNG-----ARCLDH------FSHYTCECTPGFSGVNCTVNVDDC--VNHMCQNGGT 527
PC+ +C Y C + F V DC
Sbjct: 64 LEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAA 123
Query: 528 CVDGINDYTCKCEGDFVG 545
CV+ +C+ + + G
Sbjct: 124 CVE-----SCEVDNECSG 136
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 38.3 bits (89), Expect = 0.006
Identities = 12/110 (10%), Positives = 24/110 (21%), Gaps = 20/110 (18%)
Query: 483 PCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGD 542
PC A + V + C+N +G+ Y GD
Sbjct: 35 PCLAWASAQAKALSKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGKPGD 84
Query: 543 FVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYS 592
F + +G+ + + + +
Sbjct: 85 FGYCDL----------NYCEEAVEEETGDGLDEDSDRAIEGATATSEYQT 124
Score = 37.2 bits (86), Expect = 0.015
Identities = 15/149 (10%), Positives = 32/149 (21%), Gaps = 24/149 (16%)
Query: 442 HKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCEC 501
C A+ + Q N CRN + Y
Sbjct: 34 LPCLAWASAQAKALSKHQDFNSAVQLV------------ENFCRNPDGDEEGVWCYVAGK 81
Query: 502 TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQT 561
F + + DG+++ + + + + + P T
Sbjct: 82 PGDFGYCDLNYCEEAVEEE-------TGDGLDEDSDRA----IEGATATSEYQTFFNPAT 130
Query: 562 SPCQHHDC-KNGICFQPQGSNDYLCKCAP 589
DC + + + +
Sbjct: 131 FGSGEADCGLRPLFEKKSLEDKTERELLE 159
Score = 34.5 bits (79), Expect = 0.11
Identities = 13/144 (9%), Positives = 28/144 (19%), Gaps = 25/144 (17%)
Query: 402 GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRC 461
G PC + + + + + + C N + + Y
Sbjct: 33 GLPCLAWASAQAKAL-SKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGK 81
Query: 462 APGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDD----- 516
F +C E D + G + + +
Sbjct: 82 PGDFG----YCDLNYC--EEAVEEE---TGDGLDEDSDRAIEGATATSEYQTFFNPATFG 132
Query: 517 CVNHMCQNGGTCVDGINDYTCKCE 540
C + + E
Sbjct: 133 SGEADCGLRPLFEKKSLEDKTERE 156
Score = 30.2 bits (68), Expect = 2.3
Identities = 20/132 (15%), Positives = 29/132 (21%), Gaps = 16/132 (12%)
Query: 384 CTPGYHGQHCEFMI-DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSH 442
+H +F N CRN + C Y + C +
Sbjct: 42 AQAKALSKHQDFNSAVQLVENFCRNPDGDEE------GVWC---YVAG-KPGDFGYCDLN 91
Query: 443 KCENN--ATCVDLIQAYECRCAPGFQ--GEFCQTKTPFCAGEYNP-CRNGARCLDHFSHY 497
CE D + R G E+ P G C
Sbjct: 92 YCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLED 151
Query: 498 TCECTPGFSGVN 509
E S ++
Sbjct: 152 KTERELLESYID 163
Score = 27.9 bits (62), Expect = 9.9
Identities = 15/134 (11%), Positives = 28/134 (20%), Gaps = 11/134 (8%)
Query: 342 SSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACY 401
+S Q K + + ++ C N E Y + + C
Sbjct: 40 ASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWC-YVAGKPGDFGYCDLNY----CE 94
Query: 402 GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRC 461
+G + G T + + A C L +E +
Sbjct: 95 EAVEEETGDGL----DEDSDRAIEGATATSEYQTFFNPATFGS-GEADC-GLRPLFEKKS 148
Query: 462 APGFQGEFCQTKTP 475
Sbjct: 149 LEDKTERELLESYI 162
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 38.0 bits (88), Expect = 0.007
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCEC 423
S G C P + C C+PG+ G C A CR+ G C + C C
Sbjct: 396 SRLCRNGYCTPTGK----CCCSPGWEGDFCRT---AKCEPACRHGGVCVRPNK----CLC 444
Query: 424 APGYTGDRCE 433
GY G +CE
Sbjct: 445 KKGYLGPQCE 454
Score = 36.5 bits (84), Expect = 0.021
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 458 ECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT 511
+C C+PG++G+FC +T C CR+G C+ C C G+ G C
Sbjct: 409 KCCCSPGWEGDFC--RTAKCE---PACRHGGVCVR---PNKCLCKKGYLGPQCE 454
Score = 35.0 bits (80), Expect = 0.065
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 405 CRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPG 464
CRN G C + C C+PG+ GD C + C + CV + +C C G
Sbjct: 399 CRN-GYCTPTGK----CCCSPGWEGDFCRTAKCE---PACRHGGVCV---RPNKCLCKKG 447
Query: 465 FQGEFCQ 471
+ G C+
Sbjct: 448 YLGPQCE 454
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 33.6 bits (77), Expect = 0.009
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 356 SKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEFM 396
+ C + C + G C L + + C C GY G CE
Sbjct: 6 NDCPDSHTQFCFH-GTCRFLVQEDKPACVCHSGYVGARCEHA 46
Score = 28.2 bits (63), Expect = 0.75
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 409 GTCKLLEE-GRFNCECAPGYTGDRCE 433
GTC+ L + + C C GY G RCE
Sbjct: 19 GTCRFLVQEDKPACVCHSGYVGARCE 44
Score = 28.2 bits (63), Expect = 0.95
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 40 PCQHHD-CKNGICFQPQGSNDYLCKCAPGYSG 70
P H C +G C + C C GY G
Sbjct: 9 PDSHTQFCFHGTCRFLVQEDKPACVCHSGYVG 40
Score = 28.2 bits (63), Expect = 0.95
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 563 PCQHHD-CKNGICFQPQGSNDYLCKCAPGYSG 593
P H C +G C + C C GY G
Sbjct: 9 PDSHTQFCFHGTCRFLVQEDKPACVCHSGYVG 40
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 37.3 bits (86), Expect = 0.009
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 91 GCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKS-DGLFGRLPNLIKLDLRR 149
R C L+ I ++IP + L L++N + ++ + + PNL L+L
Sbjct: 147 NIDVVLNRRSCMAATLRIIEENIPELLS-LNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205
Query: 150 NQVTGIED 157
N++ +
Sbjct: 206 NELKSERE 213
Score = 36.9 bits (85), Expect = 0.012
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 23/109 (21%)
Query: 214 YPVSTMYRDLSNNQI--GFLSNFTFSPLS-----------------KLSQLILSYNKLQC 254
Y S DL + ++ L+ +L L LS N+L
Sbjct: 125 YDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYR 184
Query: 255 ID--RDALAGLKSLRIISLHGNDISMIPE-GAFADLHAITHLAIGGNPL 300
+D + +L+I++L GN++ E L + L + GN L
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSL 232
Score = 28.4 bits (63), Expect = 7.2
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 111 KDIPLYTTELILNDNEIGKIKSDG------LFGRLPNLIKLD 146
K + L EL L+ N + D + R P L++LD
Sbjct: 218 KGLKL--EELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 34.3 bits (78), Expect = 0.013
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 347 KEKVSDEILSKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCE 394
K K + C YK C + G C+ + E R C C PGYHG+ C
Sbjct: 29 KGKGLGKKRDPCLRKYKDFCIH-GECKYVKELRAPSCICHPGYHGERCH 76
Score = 29.7 bits (66), Expect = 0.61
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 409 GTCKLLEE-GRFNCECAPGYTGDRCE 433
G CK ++E +C C PGY G+RC
Sbjct: 51 GECKYVKELRAPSCICHPGYHGERCH 76
Score = 28.9 bits (64), Expect = 0.89
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 37 QTSPC--QHHD-CKNGICFQPQGSNDYLCKCAPGYSG 70
+ PC ++ D C +G C + C C PGY G
Sbjct: 36 KRDPCLRKYKDFCIHGECKYVKELRAPSCICHPGYHG 72
Score = 28.9 bits (64), Expect = 0.89
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 560 QTSPC--QHHD-CKNGICFQPQGSNDYLCKCAPGYSG 593
+ PC ++ D C +G C + C C PGY G
Sbjct: 36 KRDPCLRKYKDFCIHGECKYVKELRAPSCICHPGYHG 72
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 36.9 bits (84), Expect = 0.020
Identities = 19/168 (11%), Positives = 32/168 (19%), Gaps = 19/168 (11%)
Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFN 420
TN +R + S +
Sbjct: 467 VRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPL-------PSYTRSQATRFRWHQPAP 519
Query: 421 CECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE 480
+ + D I D C + CV C C + G +C +
Sbjct: 520 FDKQQTWAIDNVYIG--DGCLDMCSGHGRCVQ----GSCVCDEQWGGLYCDEPETSLPTQ 573
Query: 481 YNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTC 528
N A T ++ + +GG
Sbjct: 574 LKDNFNRAPSN------QNWLTVSGGKLSTVCGAVASGLALHFSGGCS 615
Score = 36.2 bits (82), Expect = 0.036
Identities = 19/149 (12%), Positives = 33/149 (22%), Gaps = 16/149 (10%)
Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYEC 459
N + + + +T I L + AT Q
Sbjct: 467 VRDCLPTNVECSRYHLQRILVSDTFNKWT------RITLPLPSYTRSQATRFRWHQPAPF 520
Query: 460 RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN 519
+ + G + C RC+ +C C + G+ C
Sbjct: 521 DKQQTWAIDNV----YIGDGCLDMCSGHGRCVQG----SCVCDEQWGGLYCDEPETSLPT 572
Query: 520 HMCQNGGTCVDGINDYTCKCEGDFVGKFC 548
+ N N G + C
Sbjct: 573 QLKDNFNRAPSNQN--WLTVSGGKLSTVC 599
Score = 35.8 bits (81), Expect = 0.048
Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 9/121 (7%)
Query: 484 CRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDF 543
R+ A + ++ N + D MC G CV G +C C+ +
Sbjct: 505 TRSQATRFRWHQPAPFDKQQTWAIDNVYIG--DGCLDMCSGHGRCVQG----SCVCDEQW 558
Query: 544 VGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQTTK 603
G +C+ P + + + C SG
Sbjct: 559 GGLYCDEPE---TSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCS 615
Query: 604 A 604
Sbjct: 616 R 616
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 35.6 bits (82), Expect = 0.020
Identities = 4/37 (10%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 184 VLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
++ + G++ + Y+ + L + + + +G+ +
Sbjct: 44 LMLHTGKSAD-YVNLALKNGAVSLVINLGSGAFEALV 79
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 35.6 bits (82), Expect = 0.021
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 184 VLFYDGRAGEC--YIAVELFSSRIRVSYYVGNYPVS 217
++ + G+A E Y+A+ + +++SY +G+ PV
Sbjct: 51 LVLWIGKAAERADYMALAIVDGHLQLSYDLGSQPVV 86
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 32.5 bits (74), Expect = 0.024
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 355 LSKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCE 394
++KC++ C + G C L + Q CRC GY G CE
Sbjct: 3 ITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE 42
Score = 27.9 bits (62), Expect = 1.2
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 409 GTCKLLEE-GRFNCECAPGYTGDRCE 433
G C L + + C C GYTG RCE
Sbjct: 17 GQCIYLVDMSQNYCRCEVGYTGVRCE 42
Score = 26.3 bits (58), Expect = 3.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 46 CKNGICFQPQGSNDYLCKCAPGYSGV 71
C +G C + C+C GY+GV
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGV 39
Score = 26.3 bits (58), Expect = 3.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 569 CKNGICFQPQGSNDYLCKCAPGYSG 593
C +G C + C+C GY+G
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTG 38
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 35.2 bits (81), Expect = 0.030
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 184 VLFYDGRAGEC--YIAVELFSSRIRVSYYVGNYPVS 217
++ + G+ E YIA+ + +++ Y +G+ PV
Sbjct: 64 LILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVV 99
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 32.1 bits (73), Expect = 0.032
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 356 SKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEFM 396
S+C YK C G C + + C C GY G CE +
Sbjct: 6 SRCPKQYKHYCIK-GRCRFVVAEQTPSCVCDEGYIGARCERV 46
Score = 27.8 bits (62), Expect = 1.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 409 GTCK-LLEEGRFNCECAPGYTGDRCE 433
G C+ ++ E +C C GY G RCE
Sbjct: 19 GRCRFVVAEQTPSCVCDEGYIGARCE 44
Score = 27.5 bits (61), Expect = 1.7
Identities = 8/26 (30%), Positives = 8/26 (30%)
Query: 46 CKNGICFQPQGSNDYLCKCAPGYSGV 71
C G C C C GY G
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGA 41
Score = 27.5 bits (61), Expect = 1.8
Identities = 8/25 (32%), Positives = 8/25 (32%)
Query: 569 CKNGICFQPQGSNDYLCKCAPGYSG 593
C G C C C GY G
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIG 40
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 33.0 bits (76), Expect = 0.035
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 16/80 (20%)
Query: 393 CEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYT----GDRCEINIDDCLSHKCENNA 448
C C C+N G F CEC GY CE +ID+C + C
Sbjct: 6 CSLKPSICGTAVCKNI-------PGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--Q 55
Query: 449 TCVDLIQAYECRC--APGFQ 466
CV+ Y C C GF+
Sbjct: 56 LCVNYPGGYTCYCDGKKGFK 75
Score = 29.5 bits (67), Expect = 0.73
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 45/112 (40%)
Query: 430 DRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGAR 489
D C + C + C+N + +EC C G++
Sbjct: 4 DECSLKPSICGTAVCKN------IPGDFECECPEGYR----------------YNLKSKS 41
Query: 490 CLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
C D +D+C +MC CV+ YTC C+G
Sbjct: 42 CED---------------------IDECSENMCA--QLCVNYPGGYTCYCDG 70
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 35.0 bits (80), Expect = 0.039
Identities = 25/131 (19%), Positives = 29/131 (22%), Gaps = 24/131 (18%)
Query: 421 CECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE 480
C C GY G CE S Q E C C G+
Sbjct: 109 CRCDTGYIGKNCECQTQGRSS-------------QELEGSCRKDNNSIICSGLGDCVCGQ 155
Query: 481 YNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCE 540
C CEC + G C G C+C
Sbjct: 156 CL-CHTSDVPGKLIYGQYCECD------TINCERYNGQVCGGPGRGLCFCG----KCRCH 204
Query: 541 GDFVGKFCEIA 551
F G C+
Sbjct: 205 PGFEGSACQHH 215
Score = 32.7 bits (74), Expect = 0.24
Identities = 27/165 (16%), Positives = 42/165 (25%), Gaps = 42/165 (25%)
Query: 432 CEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCL 491
C C I CRC G+ G+ C+
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCE-------------------- 121
Query: 492 DHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDG--INDYTCKCEGDFVGKFCE 549
C+ S D + +C G CV G + + G++CE
Sbjct: 122 -------CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCE 174
Query: 550 IAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK 594
+ + G+C C+C PG+ G
Sbjct: 175 CDTIN---CERYNGQVCGGPGRGLC------FCGKCRCHPGFEGS 210
Score = 29.6 bits (66), Expect = 2.2
Identities = 20/102 (19%), Positives = 27/102 (26%), Gaps = 17/102 (16%)
Query: 342 SSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPG------YHGQHCE- 394
+ S C+ G C QC C +GQ+CE
Sbjct: 121 ECQTQGRSSQELEGSCRKDNNSIICSGLGDCV-----CGQCLCHTSDVPGKLIYGQYCEC 175
Query: 395 --FMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
+ G C G C C PG+ G C+
Sbjct: 176 DTINCERYNGQVCGGPGRGLCFCG---KCRCHPGFEGSACQH 214
Score = 28.0 bits (62), Expect = 7.6
Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 15/93 (16%)
Query: 509 NCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHD 568
C +C G GI C+C+ ++GK CE C+ +
Sbjct: 85 ECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQGRSSQELEGSCRKDN 140
Query: 569 CK-----NGICFQPQGSNDYLCKCAPGYSGKES 596
G C Q C C +
Sbjct: 141 NSIICSGLGDCVCGQ------CLCHTSDVPGKL 167
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 33.2 bits (75), Expect = 0.047
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 10/82 (12%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGD--RC-EINIDDCLS--HKCENNATC-- 450
C C + C + R C+C Y + +C E C C+ +A C
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTE 64
Query: 451 ---VDLIQAYECRCAPGFQGEF 469
+ C C
Sbjct: 65 EDSGSNGKKITCECTKPDSYPL 86
Score = 30.1 bits (67), Expect = 0.52
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 434 INIDDCLSHKCENNATCVDLIQ-AYECRCAPGFQ--GEFCQTKT-PFCAGEYNPCRNGAR 489
I+ C+ +C N+ C + EC+C ++ G+ C P C C A+
Sbjct: 2 ISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAK 61
Query: 490 CL-----DHFSHYTCECTPGFSG 507
C + TCECT S
Sbjct: 62 CTEEDSGSNGKKITCECTKPDSY 84
Score = 27.8 bits (61), Expect = 3.2
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYH--GQHCEFM-IDACYGNP--CRNSGTCKL 413
+ C K C C + + +C+C Y G C C N C C
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTE 64
Query: 414 LEEG----RFNCECAPGYTG 429
+ G + CEC +
Sbjct: 65 EDSGSNGKKITCECTKPDSY 84
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 35.3 bits (80), Expect = 0.047
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 220 YRDLSNNQI---GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA----GLKSLRIISLH 272
+ + + + L +L + +S L L +K L+ I++
Sbjct: 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315
Query: 273 GNDIS 277
N +S
Sbjct: 316 YNYLS 320
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 33.2 bits (75), Expect = 0.049
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGD--RCEINIDDCLSH--KCENNATCVDL 453
C + C +G C G+ +C C + C A C
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70
Query: 454 -IQAYECRCA-----PGFQGEFCQT 472
+ EC+C P F+G FC +
Sbjct: 71 DKKEVECKCTKEGSEPLFEGVFCSS 95
Score = 33.2 bits (75), Expect = 0.052
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYH--GQHCEFMIDACYGNP--CRNSGTCKLL 414
+ C + C + + RC G+ G C C N C C +
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70
Query: 415 EEGRFNCECAPGYTG 429
++ C+C +
Sbjct: 71 DKKEVECKCTKEGSE 85
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 33.8 bits (78), Expect = 0.084
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 24/81 (29%)
Query: 222 DLSNNQIG----------FLSNFTFSPLSKLSQLILSYNKLQCIDRDALA---GLK---S 265
++ +N I SN + L +L + + + L+ +
Sbjct: 99 NVESNFISGSGILALVEALQSNTS------LIELRIDNQSQPLGNNVEMEIANMLEKNTT 152
Query: 266 LRIISLHGNDISMIPEGAFAD 286
L H P ++
Sbjct: 153 LLKFGYHFTQQG--PRLRASN 171
Score = 31.9 bits (73), Expect = 0.39
Identities = 10/98 (10%), Positives = 22/98 (22%), Gaps = 28/98 (28%)
Query: 222 DLSNNQIG----------FLSNFTFSPLSKLSQLILSYNKL-----QCIDRDALAGLKSL 266
+ + N T L L + N + + +AL SL
Sbjct: 71 SIVGTRSNDPVAFALAEMLKVNNT------LKSLNVESNFISGSGILAL-VEALQSNTSL 123
Query: 267 RIISLHGNDISMIPEGA--FADL----HAITHLAIGGN 298
+ + + A++ +
Sbjct: 124 IELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161
Score = 30.7 bits (70), Expect = 0.83
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 240 SKLSQLILSYNKLQCIDRDALA-GLK---SLRIISLHGNDISMIPEGAFA 285
+ + + + + ALA LK +L+ +++ N IS G A
Sbjct: 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS--GSGILA 112
Score = 30.3 bits (69), Expect = 1.1
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 240 SKLSQLILS-YNKLQCIDRDALA-GLK---SLRIISLHGNDISMIPEGA--FADL----H 288
L ++ L+ + A A LK ++ S+ G + A A++ +
Sbjct: 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN--DPVAFALAEMLKVNN 93
Query: 289 AITHLAIGGNPLYCDCGLAWLSE 311
+ L + N + G+ L E
Sbjct: 94 TLKSLNVESNFI-SGSGILALVE 115
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 33.5 bits (76), Expect = 0.099
Identities = 24/142 (16%), Positives = 36/142 (25%), Gaps = 12/142 (8%)
Query: 382 CRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEE---------GRFNCECAPGYTGDRC 432
C Y G+ C+ +G G C G G C
Sbjct: 24 CGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPC 83
Query: 433 EINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLD 492
+I + + Q C F G CQ+ G C +
Sbjct: 84 RADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTN 143
Query: 493 HF---SHYTCECTPGFSGVNCT 511
++ +C PG+ G C
Sbjct: 144 NYCCSKWGSCGIGPGYCGAGCQ 165
Score = 32.3 bits (73), Expect = 0.25
Identities = 25/145 (17%), Positives = 35/145 (24%), Gaps = 13/145 (8%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINI--DDCLSHKCENNATCVDLI- 454
+ C N+ C C Y G C+ ATC +
Sbjct: 5 EQGSNMECPNNLCC----SQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQC 60
Query: 455 --QAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTV 512
Q C + G CQ + G C ++ C GF G+
Sbjct: 61 CSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNN----LCCSQWGFCGLGSEF 116
Query: 513 NVDDCVNHMCQNGGTCVDGINDYTC 537
C + C C C
Sbjct: 117 CGGGCQSGACSTDKPCGKDAGGRVC 141
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 34.1 bits (77), Expect = 0.13
Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 13/65 (20%)
Query: 379 QYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDD 438
C C + G + G C CAPG G CE +
Sbjct: 452 HTLCDCNCSDTQPQAP--------HCSDGQGHL---QCGV--CSCAPGRLGRLCESRGLE 498
Query: 439 CLSHK 443
L +
Sbjct: 499 NLYFQ 503
Score = 29.1 bits (64), Expect = 4.5
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 12/54 (22%)
Query: 496 HYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
H C+C + G G+ C C +G+ CE
Sbjct: 452 HTLCDCNCSDTQPQAPHC--------SDGQGHLQCGV----CSCAPGRLGRLCE 493
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 31.6 bits (71), Expect = 0.14
Identities = 11/76 (14%), Positives = 16/76 (21%), Gaps = 6/76 (7%)
Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDR---CEINIDDCLSH--KCENNATCV- 451
C + C +G C + D C C A C
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKM 64
Query: 452 DLIQAYECRCAPGFQG 467
+ C+C
Sbjct: 65 NDKNEIVCKCTKEGSE 80
Score = 29.6 bits (66), Expect = 0.74
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 5/76 (6%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYH--GQHCEFMIDA-CYGN--PCRNSGTCKL 413
+ C + C + + RC + C + C C CK+
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKM 64
Query: 414 LEEGRFNCECAPGYTG 429
++ C+C +
Sbjct: 65 NDKNEIVCKCTKEGSE 80
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 33.8 bits (77), Expect = 0.17
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 184 VLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
VL A I +E+ ++ G ++ Y+ + +
Sbjct: 236 VLLGISSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARAL 280
Score = 31.1 bits (70), Expect = 1.0
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 184 VLFYDGRAGEC-YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
+++Y + Y ++L R+ + +G + L ++
Sbjct: 59 LIYYVAHQNQMDYATLQLQEGRLHFMFDLGKGRTKVSHPALLSDG 103
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 32.5 bits (74), Expect = 0.19
Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 22/155 (14%)
Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRF 419
+C P T + VC C G G+ CE D +G+P ++G +L
Sbjct: 8 SCAIVPKTKEVVC---------THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRP--- 55
Query: 420 NCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYEC-RCAPGFQGEFCQTKTPFCA 478
C+C D + + L+ +C C+ + C RC GF G
Sbjct: 56 -CQCND--NIDPNAVGNCNRLTGECLK---CIYNTAGFYCDRCKEGFFGNPLAPNPADKC 109
Query: 479 GE---YNPCRNGARCLDHFSHYTCECTPGFSGVNC 510
+ + C+C P SG +C
Sbjct: 110 KACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC 144
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 33.0 bits (74), Expect = 0.27
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 496 HYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
+ C+C C + + GT G+ C+C ++G CE
Sbjct: 430 TFDCDC-------ACQAQAEPNSHRCNNGNGTFECGV----CRCGPGWLGSQCE 472
Score = 32.6 bits (73), Expect = 0.36
Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 21/110 (19%)
Query: 372 CEPLPERQYQCRCTPGYHGQHCEFMIDA-CYGNPCRNSGTCKLLEEG---------RFNC 421
C C G F I+A G P + + G F+C
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 422 ECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
+C C+ + N T + CRC PG+ G C+
Sbjct: 434 DC-------ACQAQAEPNSHRCNNGNGTFECGV----CRCGPGWLGSQCE 472
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 32.7 bits (74), Expect = 0.31
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 184 VLFYDGRAGEC-YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
+LFY R + V+L + SY +G+ STM N+
Sbjct: 73 LLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDG 117
Score = 32.7 bits (74), Expect = 0.38
Identities = 5/45 (11%), Positives = 13/45 (28%)
Query: 184 VLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
VL + +E+ ++ G + +Y +
Sbjct: 248 VLLGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHM 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 32.9 bits (74), Expect = 0.34
Identities = 17/150 (11%), Positives = 40/150 (26%), Gaps = 24/150 (16%)
Query: 261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
+ L+ + L G + ++ + ++ L + N LY W+ D +
Sbjct: 496 SDLRRIESSDLSGANRIVLEDS---NILQPVGLTVFENWLY----------WI--DKQQQ 540
Query: 321 GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQG---VCEPLPE 377
I + + + E+ + + N G +C +
Sbjct: 541 MIEKIDMTGREGRTKV--QARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGD 598
Query: 378 RQYQCRCTPGYH----GQHCEFMIDACYGN 403
+C C C + +
Sbjct: 599 GTTRCSCPMHLVLLQDELSCGGTKHHHHHH 628
Score = 29.0 bits (64), Expect = 5.1
Identities = 19/151 (12%), Positives = 35/151 (23%), Gaps = 17/151 (11%)
Query: 261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
+ ++ G + +I + L L + +Y W ++R
Sbjct: 185 LDTNLIESSNMLGLNREVIADD----LPHPFGLTQYQDYIYWT---DWSRRSIERANKTS 237
Query: 321 GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
G R + S N C S +C +P +
Sbjct: 238 GQNRTI----------IQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGF 287
Query: 381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTC 411
C C Y A + +
Sbjct: 288 VCGCPAHYSLNADNRTCSAPTTFLLFSQKSA 318
Score = 29.0 bits (64), Expect = 5.3
Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 4/50 (8%)
Query: 388 YHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYT----GDRCE 433
E+ C + S C + +G C C C
Sbjct: 570 KELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCG 619
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 29.3 bits (65), Expect = 0.37
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 361 CYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEF 395
Y C N GV + Y C C GY G C+
Sbjct: 6 SYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQT 41
Score = 27.7 bits (61), Expect = 1.0
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 400 CYGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCE 433
Y C N G +E + C C GY+GDRC+
Sbjct: 6 SYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 31.4 bits (71), Expect = 0.50
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 184 VLFYDGRAGEC--YIAVELFSSRIRVSYYVGNYPVSTMY 220
VL + Y+ + + +I V + VG ++
Sbjct: 45 VLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 83
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 31.4 bits (71), Expect = 0.55
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 184 VLFYDGRAGEC---YIAVELFSSRIRVSYYVGNYPVSTM 219
+L Y+G+ + ++++ L + + Y +G
Sbjct: 50 LLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIR 88
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 31.7 bits (71), Expect = 0.57
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 184 VLFYDGRAGEC--YIAVELFSSRIRVSYYVGNYPVSTMY 220
VL + Y+ + + +I V + VG ++
Sbjct: 51 VLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 89
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 31.7 bits (71), Expect = 0.63
Identities = 19/118 (16%), Positives = 27/118 (22%), Gaps = 15/118 (12%)
Query: 355 LSKCNACYKSPCTNQG-VCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKL 413
+S + C C + C C +G CE + P R +
Sbjct: 246 ISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESA 305
Query: 414 LEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
E C C D L + C C G C+
Sbjct: 306 SEC----LPCDCNGRSQEC--YFDPELYRSTGHGGHC--------TNCRDNTDGAKCE 349
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 31.6 bits (71), Expect = 0.63
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 12/68 (17%)
Query: 27 IAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDA 86
+ + C + +C Y C C G +E +T
Sbjct: 258 FSQQRQPNATNPCGIDNGGCSH-LCLMSPVKPFYQCACPTGVKLLENGKT---------- 306
Query: 87 ACPSGCSC 94
C G S
Sbjct: 307 -CKDGNSH 313
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 31.3 bits (70), Expect = 0.66
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 420 NCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYE---CRCAPGFQGEFCQTKTPF 476
+ C C+ + DC A C + ++ +C C
Sbjct: 15 DGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCNTVECLFDNFE 74
Query: 477 CAGEYNPCRNGARCLDHFSHYTCEC-----TPGFSGVNCTVNVDDC 517
C G C+ C DHF C G+ G++C + +
Sbjct: 75 CQGNSKTCKYDKYCADHFKDNHCNQGCNSEECGWDGLDCAADQPEN 120
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 31.9 bits (72), Expect = 0.66
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Query: 398 DACYGNPCRNSGTC-KLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
C C G C + + P + + +
Sbjct: 337 LLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVE 396
Query: 457 YECRCAPGFQGEFCQTK 473
++CRC PG+Q +C+ K
Sbjct: 397 FKCRCYPGWQAPWCERK 413
Score = 29.6 bits (66), Expect = 3.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 377 ERQYQCRCTPGYHGQHCE 394
+++CRC PG+ CE
Sbjct: 394 AVEFKCRCYPGWQAPWCE 411
Score = 28.0 bits (62), Expect = 8.8
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Query: 482 NPCRNGARCLDHFSH--YTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC 539
C RC+ SH P + T + ++ C+C
Sbjct: 342 ALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVEFKCRC 401
Query: 540 EGDFVGKFCE 549
+ +CE
Sbjct: 402 YPGWQAPWCE 411
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 31.6 bits (71), Expect = 0.79
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 8/47 (17%)
Query: 38 TSPCQHHDCKNGIC--------FQPQGSNDYLCKCAPGYSGVEEFRT 76
+ C+ NG C S + C C G + R+
Sbjct: 267 VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS 313
Score = 30.8 bits (69), Expect = 1.4
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 8/40 (20%)
Query: 561 TSPCQHHDCKNGIC--------FQPQGSNDYLCKCAPGYS 592
+ C+ NG C S + C C G
Sbjct: 267 VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 306
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 31.4 bits (70), Expect = 0.81
Identities = 29/197 (14%), Positives = 46/197 (23%), Gaps = 46/197 (23%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
Y S C+N P C F + C + + G
Sbjct: 118 KVTYDSFCSNGVTHRNQPRGD----CDGVQINVPITFQVKVTATE-CIQEQSFVIRALGF 172
Query: 419 FNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCA 478
+ C C CRC G+ G+ C+ +T +
Sbjct: 173 TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQGRS 228
Query: 479 GEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCK 538
+ +C + + + C G CV G C
Sbjct: 229 SQELEG------------------------SCRKDNNSII---CSGLGDCVCG----QCL 257
Query: 539 C------EGDFVGKFCE 549
C G++CE
Sbjct: 258 CHTSDVPGKLIYGQYCE 274
Score = 29.1 bits (64), Expect = 3.7
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 23/93 (24%)
Query: 357 KCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEE 416
+ + +S C +G E CRC GY G++CE + G+C+
Sbjct: 189 RDQSRDRSLCHGKGFLEC-----GICRCDTGYIGKNCEC--QTQGRSSQELEGSCRKDNN 241
Query: 417 -----GRFNCEC-----------APGYTGDRCE 433
G +C C G CE
Sbjct: 242 SIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCE 274
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 31.0 bits (70), Expect = 0.84
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 222 DLSNNQIGFLSNFTFSPLSK-------LSQLILSYNKLQCIDRDALAGL----KSLRIIS 270
+++ N + +S L + + + L+ + + L L SLR+++
Sbjct: 45 EVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104
Query: 271 LHGNDISMIPEGAFADLHAITH 292
+ N ++ PE L +
Sbjct: 105 VESNFLT--PELLARLLRSTLV 124
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 31.0 bits (70), Expect = 1.1
Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 26/114 (22%)
Query: 253 QCIDR-DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC-DCGLAWLS 310
Q ID ++ AG+ + +++ HG+ FA C C
Sbjct: 136 QNIDNLESYAGISTDKLVQCHGS---------FATAT-------------CVTCHWNLPG 173
Query: 311 EWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCK--EKVSDEILSKCNACY 362
E + + C R + + + E Y
Sbjct: 174 ERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSY 227
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 27.9 bits (62), Expect = 1.2
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 358 CNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCE 394
CNA +++ C + G C+ + C+C Y G+ C
Sbjct: 12 CNAEFQNFCIH-GECKYIEHLEAVTCKCQQEYFGERCG 48
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 30.3 bits (68), Expect = 1.3
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 184 VLFYDGRAGEC------YIAVELFSSRIRVSYYVGNYPVS 217
+L + G +I++ L + Y +G+
Sbjct: 46 LLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEAR 85
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 30.2 bits (68), Expect = 1.3
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 184 VLFY-DGRAGECYIAVELFSSRIRVSYYVGNYPVS 217
+L R + +EL + R++++ +G P +
Sbjct: 43 ILMATTSRDSADTLRLELDAGRVKLTVNLGKGPET 77
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 30.8 bits (69), Expect = 1.3
Identities = 18/125 (14%), Positives = 23/125 (18%), Gaps = 9/125 (7%)
Query: 421 CECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE 480
C G C +D C C A + P +G C G+
Sbjct: 236 CNLTFGPEYSVCP-GMDVCARLWC---AVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGK 291
Query: 481 YNPCRNGARCLDHFSHYTCECTP-----GFSGVNCTVNVDDCVNHMCQNGGTCVDGINDY 535
G C N +N G G
Sbjct: 292 CVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTGKRAI 351
Query: 536 TCKCE 540
C
Sbjct: 352 YRSCS 356
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 30.8 bits (68), Expect = 1.4
Identities = 19/132 (14%), Positives = 34/132 (25%), Gaps = 16/132 (12%)
Query: 340 PASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPER------QYQCRCTPGYHGQHC 393
PAS+ + E S E+ + +P +++
Sbjct: 122 PASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVP 181
Query: 394 EFMIDACYGN-----PCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNA 448
F +D Y + C G C C C GYT + + + +
Sbjct: 182 PFGLDGVYISEPCPSYCSGHGDCI-----SGVCFCDLGYTAAQGTCVSNTPNHSEMFDRF 236
Query: 449 TCVDLIQAYECR 460
Y+
Sbjct: 237 EGKLSPLWYKIT 248
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/114 (14%), Positives = 26/114 (22%), Gaps = 13/114 (11%)
Query: 417 GRFNCECAPGYTGDRCEINIDDCLSHK-----CENNATCVDLIQAYECRCAPGFQGEFCQ 471
RF + +D + C + C+ C C G+
Sbjct: 166 TRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCIS----GVCFCDLGYTAAQG- 220
Query: 472 TKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNG 525
+ N R S + T G G C D + G
Sbjct: 221 ---TCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLG 271
Score = 30.4 bits (67), Expect = 1.7
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 8/75 (10%)
Query: 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCEC 423
S C+ G C C C GY + + + + KL +
Sbjct: 196 SYCSGHGDC-----ISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKL---SPLWYKI 247
Query: 424 APGYTGDRCEINIDD 438
G G C D
Sbjct: 248 TGGQVGTGCGTLNDG 262
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 30.4 bits (68), Expect = 1.5
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 184 VLFYDGRAGEC--YIAVELFSSRIRVSYYVGNYPVSTMY 220
VL + Y+ + + +I V + VG ++
Sbjct: 79 VLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 117
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 30.7 bits (69), Expect = 1.8
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 463 PGFQG---EFCQTKTPFCAGEYNPCRNGARC-LDHFSHYTCECTPGFSGVNCTV------ 512
PG + + G + C A C L+ +C C G++G
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDL 64
Query: 513 -----NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
C C+ CV N + D +G C+
Sbjct: 65 DGFPDEKLRCPERQCRKDN-CVTVPNSGQEDVDRDGIGDACD 105
Score = 29.9 bits (67), Expect = 2.6
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 386 PGYHG---QHCEFMIDAC---YGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDD 438
PG C + C C L +G +C CA G+ G+ D
Sbjct: 5 PGVPTSPVWWNS-AQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDT 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 2.5
Identities = 27/122 (22%), Positives = 39/122 (31%), Gaps = 49/122 (40%)
Query: 181 TVRVLFYDGRA-----------GECYIAVELFSSRI--------------RVSYYVG--- 212
V V+FY G Y + + R+ RV G
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 213 ---NYPVSTMYRDLSNNQI---GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL 266
NY ++ N Q G L L ++ +L++ KLQ ID L KSL
Sbjct: 1842 EIVNY-------NVENQQYVAAGDLRA-----LDTVTN-VLNFIKLQKIDIIELQ--KSL 1886
Query: 267 RI 268
+
Sbjct: 1887 SL 1888
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 29.0 bits (65), Expect = 2.9
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 464 GFQGEFCQTKTPFCAGEYN-PCRNGARCLDHFSHYTCECTPGF----SGVNCTVN 513
GF + T C + PC + C + Y C C P + NC VN
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSH--FCNNFIGGYFCSCPPEYFLHDDMKNCGVN 159
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 29.4 bits (66), Expect = 3.9
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 119 ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
+ + ++ + +PNL+ LD+ + T I D F
Sbjct: 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ 248
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 28.7 bits (64), Expect = 4.2
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG----NDISMIPEGAFADL-HAI 290
K+ + + + + I D + GL+ + I L D + +L ++
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116
Query: 291 THLAIGGNPLYCDCGLAWLS 310
+ I D G+ L
Sbjct: 117 LEMEIISCGNVTDKGIIALH 136
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 28.3 bits (62), Expect = 4.5
Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 6/122 (4%)
Query: 357 KCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEE 416
C C C + + +C C P + + G RN C L
Sbjct: 2 SMETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNE--CAL--- 56
Query: 417 GRFNCECAPGYTGDRCEINIDDCLSHKCENNATCV-DLIQAYECRCAPGFQGEFCQTKTP 475
+ C+ P C C ++TCV D C E ++
Sbjct: 57 LKARCKEQPELEVQYQGKCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPSSSEQS 116
Query: 476 FC 477
C
Sbjct: 117 LC 118
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 29.5 bits (65), Expect = 4.6
Identities = 27/188 (14%), Positives = 42/188 (22%), Gaps = 32/188 (17%)
Query: 378 RQYQCRCTPGYHGQHCEFMID-----ACYGNPCRN-------------SGTCKLLEEGRF 419
R Q Y CE + C C + + R
Sbjct: 25 RHRQIVVDKYYQENFCEQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVR- 83
Query: 420 NCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAG 479
+ + G C + C + C I+ +C+ C + C G
Sbjct: 84 SVLRPSQFGGQPCTAPLVA--FQPCIPSKLCK--IEEADCKNKFRCDSGRCIARKLECNG 139
Query: 480 ---------EYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVD 530
E + R A C ++ G V GG C
Sbjct: 140 ENDCGDNSDERDCGRTKAVCTRKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKT 199
Query: 531 GINDYTCK 538
+ T
Sbjct: 200 VKSSRTSN 207
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 29.1 bits (64), Expect = 4.8
Identities = 24/126 (19%), Positives = 33/126 (26%), Gaps = 23/126 (18%)
Query: 435 NIDDCLSHKCENNATCVDLIQAYE-----CRCAPGFQGEFCQ------TKTPFCAGEYNP 483
+I C +A D + C C G C + P+ +
Sbjct: 259 DISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDS 318
Query: 484 CRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDF 543
C H Y C P + N D+ Q GG C C+
Sbjct: 319 ANECQSCNCHGHAYDCYYDPEVDRREASQNQDNV----YQGGGVC--------LDCQHHT 366
Query: 544 VGKFCE 549
G CE
Sbjct: 367 TGINCE 372
Score = 28.3 bits (62), Expect = 9.1
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 21/83 (25%)
Query: 372 CEPLPERQYQCRCTPGYHGQ----------------HCEFMIDACYGNPCRNSGTCKLLE 415
C+ RC PG++ Q +C CY +P + +
Sbjct: 290 CQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQ 349
Query: 416 EGRFN-----CECAPGYTGDRCE 433
+ + +C TG CE
Sbjct: 350 DNVYQGGGVCLDCQHHTTGINCE 372
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 28.3 bits (63), Expect = 5.2
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 184 VLFYDGRAGEC-YIAVELFSSRIRVSYYVGNYPVSTM 219
V+FY + + + L R + + ++
Sbjct: 54 VIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVG 90
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 28.3 bits (63), Expect = 5.2
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 184 VLFYDGRAGEC-YIAVELFSSRIRVSYYVGNYPVSTM 219
V+FY + + + L R + + ++
Sbjct: 42 VIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVG 78
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_T 3u5g_V
Length = 87
Score = 26.8 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 163 ENDQGCLGDNYCPPKCTCTVRVL 185
END+G L + Y P KC+ T R++
Sbjct: 2 ENDKGQLVELYVPRKCSATNRII 24
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 27.6 bits (61), Expect = 7.4
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 386 PGYHGQHCEFMIDACYGNPCRNSGTCKLL--EEGRFNCECAPGYTGDRCEINIDD 438
G+ + ID C P G F C C GY R + +
Sbjct: 113 TGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 28.3 bits (62), Expect = 7.9
Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 16/129 (12%)
Query: 261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
A + +L G+ + L + + + LY D+
Sbjct: 222 AKHHVIERANLDGSHRKAVISQ---GLPHPFAITVFEDSLYWT------------DWHTK 266
Query: 321 GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
I + +++ + N C + +C P + Y
Sbjct: 267 SINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSG-QNY 325
Query: 381 QCRCTPGYH 389
C C G+
Sbjct: 326 TCACPTGFR 334
Score = 28.3 bits (62), Expect = 8.2
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
+ + E + + + H Q + C N + C L
Sbjct: 266 KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLC-LPSGQN 324
Query: 419 FNCECAPGYT---GDRCEINI 436
+ C C G+ C + +
Sbjct: 325 YTCACPTGFRKINSHACALEV 345
Score = 27.9 bits (61), Expect = 9.9
Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 403 NPCRNSGTCK---LLEEGRFNCECAPGYTGD 430
N C G C EG F C C GY
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELR 32
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 28.3 bits (62), Expect = 8.5
Identities = 23/195 (11%), Positives = 40/195 (20%), Gaps = 33/195 (16%)
Query: 356 SKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGN--PCRNSGTCKL 413
+ N + C C+ C C GN + C
Sbjct: 172 TVINGQFVERCWTHSHCQK----VCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKC-- 225
Query: 414 LEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTK 473
C Y RC ++ C FCQ
Sbjct: 226 -------VACRNFYLDGRC---VETCPPPYYHFQDWRC-------------VNFSFCQDL 262
Query: 474 TPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGIN 533
C + + H + EC G++ + + C+ +
Sbjct: 263 HHKCKNSRRQGCHQ--YVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKT 320
Query: 534 DYTCKCEGDFVGKFC 548
+ + G
Sbjct: 321 IDSVTSAQELRGCTV 335
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 28.2 bits (63), Expect = 8.7
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 22/73 (30%)
Query: 258 DAL---AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVK 314
D L AGL+ ++ HG F H ++ C + W+K
Sbjct: 137 DTLERIAGLEQEDLVEAHGT---------FYTSHCVS----------ASCRHEYPLSWMK 177
Query: 315 RDYVEPGIARCTE 327
+C +
Sbjct: 178 EKIFSEVTPKCED 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.472
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,551,967
Number of extensions: 608210
Number of successful extensions: 5879
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3468
Number of HSP's successfully gapped: 1841
Length of query: 604
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 505
Effective length of database: 3,937,614
Effective search space: 1988495070
Effective search space used: 1988495070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)