BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15410
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0MQG8|NDUS3_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Pan troglodytes GN=NDUFS3 PE=2 SV=1
Length = 264
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 6 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
+P ++VA L FG+Y AEILPKY+++VQ++ +ELE+ I P+GV+PVL FL+DH AQ
Sbjct: 48 RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 107
Query: 66 FVSLVDIAGMDVPSRPNRFEV 86
F SLVD+ +DVP+R NRFE+
Sbjct: 108 FKSLVDLTAVDVPTRQNRFEI 128
>sp|O75489|NDUS3_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Homo sapiens GN=NDUFS3 PE=1 SV=1
Length = 264
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 6 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
+P ++VA L FG+Y AEILPKY+++VQ++ +ELE+ I P+GV+PVL FL+DH AQ
Sbjct: 48 RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 107
Query: 66 FVSLVDIAGMDVPSRPNRFEV 86
F SLVD+ +DVP+R NRFE+
Sbjct: 108 FKSLVDLTAVDVPTRQNRFEI 128
>sp|Q0MQG7|NDUS3_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS3 PE=2
SV=1
Length = 263
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 6 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
+P ++VA L FG+Y AEILPKY+++VQ++ +ELE+ I P+GV+PVL FL+DH AQ
Sbjct: 47 RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 106
Query: 66 FVSLVDIAGMDVPSRPNRFEV 86
F SLVD+ +DVP+R NRFE+
Sbjct: 107 FKSLVDLTAVDVPTRQNRFEI 127
>sp|Q0MQG6|NDUS3_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Pongo pygmaeus GN=NDUFS3 PE=2 SV=1
Length = 263
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 6 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
+P ++VA L FG+Y AEILPKY+++VQ++ +ELE+ I P+GV+PVL FL+DH AQ
Sbjct: 47 RPRNDVAHQQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 106
Query: 66 FVSLVDIAGMDVPSRPNRFEV 86
F SLVD+ +DVP+R NRFE+
Sbjct: 107 FKSLVDLTAVDVPTRQNRFEI 127
>sp|P23709|NDUS3_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Bos taurus GN=NDUFS3 PE=1 SV=1
Length = 266
Score = 99.0 bits (245), Expect = 9e-21, Method: Composition-based stats.
Identities = 43/81 (53%), Positives = 62/81 (76%)
Query: 6 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
+P ++VA L FG+Y AEILPKY+++VQ++ +ELE+ I P+GV+PVL FL+DH AQ
Sbjct: 50 RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQ 109
Query: 66 FVSLVDIAGMDVPSRPNRFEV 86
F SL D+ +D+P+R NRFE+
Sbjct: 110 FKSLADLTAVDIPTRQNRFEI 130
>sp|Q9DCT2|NDUS3_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Mus musculus GN=Ndufs3 PE=1 SV=2
Length = 263
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 59/81 (72%)
Query: 6 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
+P +V L FG+Y AEILPKY+++VQ++ DELE+ I P+GV+P L FL+DH AQ
Sbjct: 47 RPRSDVTHKQLSAFGEYVAEILPKYVQQVQVSCLDELEICIHPDGVIPTLTFLRDHTNAQ 106
Query: 66 FVSLVDIAGMDVPSRPNRFEV 86
F SL D+ +DVP+R NRFE+
Sbjct: 107 FKSLADLTAVDVPTRQNRFEI 127
>sp|Q00673|NDUS3_CANMA Probable NADH-ubiquinone oxidoreductase 30.4 kDa subunit,
mitochondrial OS=Candida maltosa GN=ALI1 PE=3 SV=1
Length = 276
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 10 EVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSL 69
+V L FG Y LPKYI++ + DEL + + P + PV+ +LK+H + QF ++
Sbjct: 60 KVQIEELHKFGTYIMSCLPKYIQQFSVWK-DELTIYVAPSAIRPVMSYLKNHTSCQFKAV 118
Query: 70 VDIAGMDVPSRPNRFEV 86
+DI D PSR NRF+V
Sbjct: 119 MDITAADYPSRTNRFDV 135
>sp|P23710|NDUS3_NEUCR NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-31 PE=2 SV=2
Length = 283
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 15 HLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAG 74
+L +G + LPKYI++ + DEL + I P GV+PV FLK + A++ + DI
Sbjct: 72 NLHKYGSWLMGCLPKYIQQFSVWK-DELTIYISPAGVIPVFSFLKYNTAAEYTQVSDITA 130
Query: 75 MDVPSRPNRFEV 86
+D P++ RFEV
Sbjct: 131 VDFPTKDQRFEV 142
>sp|O21271|NDUS3_RECAM NADH-ubiquinone oxidoreductase subunit 9 OS=Reclinomonas
americana GN=NAD9 PE=3 SV=1
Length = 204
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L +FG ++ PKYI+K I S EL L + P ++ +++ LK+H QF SL D+ +
Sbjct: 10 LKEFGISLIKMFPKYIDKA-IYSKGELTLHVKPTNLIALMKILKNHTNCQFKSLSDLCAV 68
Query: 76 DVPSRPNRFEV 86
D P + RFE+
Sbjct: 69 DFPEKKERFEI 79
>sp|P34944|NDUS3_MARPO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3
OS=Marchantia polymorpha GN=NAD9 PE=3 SV=2
Length = 195
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 19 FGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVP 78
F K LPK+I K Q TS E L P + +L FLK H +F L+DI G+D P
Sbjct: 6 FFKSLIATLPKWIHKCQ-TSKHENILYTNPNSLFQLLYFLKYHTNTRFKVLIDICGVDYP 64
Query: 79 SRPNRFEV 86
SR RFEV
Sbjct: 65 SRKRRFEV 72
>sp|Q2W3I6|NUOC_MAGSA NADH-quinone oxidoreductase subunit C OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=nuoC PE=3
SV=1
Length = 199
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L D G+Y A+ LP+ + ++ EL L + +V V+ +LKD F LVD+ G+
Sbjct: 5 LKDLGEYIAQALPQDVLGTEVNRCGELSLTVKAASIVKVMTYLKDDAGCLFKQLVDVCGV 64
Query: 76 DVPSRPNRFEV 86
D P R RF+V
Sbjct: 65 DWPGREQRFDV 75
>sp|Q98KQ7|NUOC_RHILO NADH-quinone oxidoreductase subunit C OS=Rhizobium loti (strain
MAFF303099) GN=nuoC PE=3 SV=1
Length = 201
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 14 SHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIA 73
+ L + Y E L + I G EL + + P ++ V+ FL+D QF+S++D+
Sbjct: 3 ASLSELSTYLGERLIGRVNDADIAYG-ELTMHVEPRNLIEVVTFLRDDQRCQFISIIDVC 61
Query: 74 GMDVPSRPNRFEV 86
G D PSRP RF+V
Sbjct: 62 GADYPSRPKRFDV 74
>sp|Q2RU38|NUOC_RHORT NADH-quinone oxidoreductase subunit C OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=nuoC PE=3 SV=1
Length = 213
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + G LP + +V++ + DEL+++ + VL FL+D +F LVDIAG+
Sbjct: 12 LKELGARIEAALPTDVVRVEM-AKDELQVIAQRPSIAKVLTFLRDDSACRFSQLVDIAGV 70
Query: 76 DVPSRPNRFEV 86
D PSR RFEV
Sbjct: 71 DYPSREERFEV 81
>sp|B9JD44|NUOC_AGRRK NADH-quinone oxidoreductase subunit C OS=Agrobacterium
radiobacter (strain K84 / ATCC BAA-868) GN=nuoC PE=3
SV=1
Length = 200
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + Y E+ I +I G EL + E V+ +L FL+D FV++ DI G+
Sbjct: 5 LNELATYLTEVRGALISSSEIKYG-ELNVTTTAENVIALLTFLRDDAKCGFVNMTDICGV 63
Query: 76 DVPSRPNRFEV 86
D P RP+RF+V
Sbjct: 64 DWPQRPDRFDV 74
>sp|Q37622|NDUS3_PROWI NADH-ubiquinone oxidoreductase subunit 9 OS=Prototheca
wickerhamii GN=NAD9 PE=3 SV=1
Length = 192
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 18 DFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDV 77
+F K ++P++I+ ++ +E + PE + P L FL+DH + Q+ +DI D
Sbjct: 4 NFEKSILLMVPQWIQ-YHVSHRNETTFYVYPEYLKPFLYFLRDHMSTQYKVCIDITAADY 62
Query: 78 PSRPNRFEV 86
PSR +RFE
Sbjct: 63 PSRASRFEC 71
>sp|A6X1N2|NUOC_OCHA4 NADH-quinone oxidoreductase subunit C OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=nuoC
PE=3 SV=1
Length = 202
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ ++ G EL L + ++ VL FL+D QFV+L
Sbjct: 1 MSEEALGELSGYIKERLGDAIEEAKLAYG-ELTLSVPAASIISVLTFLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQRAKRFDV 75
>sp|Q0C1E5|NUOC_HYPNA NADH-quinone oxidoreductase subunit C OS=Hyphomonas neptunium
(strain ATCC 15444) GN=nuoC PE=3 SV=1
Length = 202
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L D + +P + QI G EL LL + +VP+L+FL+D F + +D+ G+
Sbjct: 6 LSDLAAHIEGRMPDAVRSWQIHVG-ELTLLAERDHIVPLLRFLRDDQQCNFETFIDVCGV 64
Query: 76 DVPSRPNRFEV 86
D P R RFEV
Sbjct: 65 DYPERSERFEV 75
>sp|B3PVZ9|NUOC1_RHIE6 NADH-quinone oxidoreductase subunit C 1 OS=Rhizobium etli (strain
CIAT 652) GN=nuoC1 PE=3 SV=1
Length = 200
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + Y E I Q+ G EL L E ++P+L FL+D FV+L+DI G+
Sbjct: 5 LTELASYLGEARGNLIAASQLKYG-ELTLTATGENLIPLLTFLRDDAKCGFVNLIDICGV 63
Query: 76 DVPSRPNRFEV 86
D P R RF+V
Sbjct: 64 DWPQRELRFDV 74
>sp|Q11JK4|NUOC_MESSB NADH-quinone oxidoreductase subunit C OS=Mesorhizobium sp.
(strain BNC1) GN=nuoC PE=3 SV=1
Length = 200
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L D Y E L ++ + DEL + + P +V VL FLK QF + VDI+G+
Sbjct: 5 LRDLAGYIKEKLDGRVQDWMVAY-DELTIFVEPGDIVDVLTFLKSDVQCQFFAFVDISGV 63
Query: 76 DVPSRPNRFEV 86
D P+R RFEV
Sbjct: 64 DYPARERRFEV 74
>sp|A1USW9|NUOC_BARBK NADH-quinone oxidoreductase subunit C OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=nuoC PE=3 SV=1
Length = 205
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
+A LV+ Y E L +E+ + G EL ++ + ++ VL F++D QF++++
Sbjct: 1 MATETLVELAAYLKEKLGDKLEESALAFG-ELTIVSRLDAIIDVLMFIRDDSRCQFINII 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P+R RF+V
Sbjct: 60 DISGVDYPARDKRFDV 75
>sp|A9CJB1|NUOC_AGRT5 NADH-quinone oxidoreductase subunit C OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=nuoC PE=3 SV=1
Length = 200
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L D Y E + I G EL L PE V+ +L FL+D FV+++DI G+
Sbjct: 5 LNDLAAYVKEARGSLVVSADIAYG-ELTLNTTPENVIALLTFLRDDVQCGFVNIIDICGV 63
Query: 76 DVPSRPNRFEV 86
D P R RF+V
Sbjct: 64 DWPQREKRFDV 74
>sp|Q8G1B5|NUOC_BRUSU NADH-quinone oxidoreductase subunit C OS=Brucella suis biovar 1
(strain 1330) GN=nuoC PE=3 SV=1
Length = 202
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ + G EL L + ++ VL FL+D QFV+L
Sbjct: 1 MSEEALGELSGYIRERLGDAIEEANLAYG-ELTLCVPVASLIGVLTFLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQREKRFDV 75
>sp|B0CLD1|NUOC_BRUSI NADH-quinone oxidoreductase subunit C OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=nuoC PE=3 SV=1
Length = 202
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ + G EL L + ++ VL FL+D QFV+L
Sbjct: 1 MSEEALGELSGYIRERLGDAIEEANLAYG-ELTLCVPVASLIGVLTFLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQREKRFDV 75
>sp|A5VPY5|NUOC_BRUO2 NADH-quinone oxidoreductase subunit C OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=nuoC PE=3 SV=1
Length = 202
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ + G EL L + ++ VL FL+D QFV+L
Sbjct: 1 MSEEALGELSGYIRERLGDAIEEANLAYG-ELTLCVPVASLIGVLTFLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQREKRFDV 75
>sp|Q8YGK2|NUOC_BRUME NADH-quinone oxidoreductase subunit C OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
GN=nuoC PE=3 SV=1
Length = 202
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ + G EL L + ++ VL FL+D QFV+L
Sbjct: 1 MSEEALGELSGYIRERLGDAIEEANLAYG-ELTLCVPVASLIGVLTFLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQREKRFDV 75
>sp|C0RIE1|NUOC_BRUMB NADH-quinone oxidoreductase subunit C OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=nuoC PE=3 SV=1
Length = 202
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ + G EL L + ++ VL FL+D QFV+L
Sbjct: 1 MSEEALGELSGYIRERLGDAIEEANLAYG-ELTLCVPVASLIGVLTFLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQREKRFDV 75
>sp|A9MAI1|NUOC_BRUC2 NADH-quinone oxidoreductase subunit C OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=nuoC PE=3 SV=1
Length = 202
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ + G EL L + ++ VL FL+D QFV+L
Sbjct: 1 MSEEALGELSGYIRERLGDAIEEANLAYG-ELTLCVPVASLIGVLTFLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQREKRFDV 75
>sp|Q1MIL3|NUOC_RHIL3 NADH-quinone oxidoreductase subunit C OS=Rhizobium leguminosarum
bv. viciae (strain 3841) GN=nuoC PE=3 SV=1
Length = 200
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + Y E I Q+ G EL L E +V +L FL+D FV+L+DI G+
Sbjct: 5 LTELASYLGEARGNLIAASQMKYG-ELTLTTTGENLVALLTFLRDDAKCGFVNLIDICGV 63
Query: 76 DVPSRPNRFEV 86
D P R RF+V
Sbjct: 64 DWPQRELRFDV 74
>sp|B5ZYL4|NUOC_RHILW NADH-quinone oxidoreductase subunit C OS=Rhizobium leguminosarum
bv. trifolii (strain WSM2304) GN=nuoC PE=3 SV=1
Length = 200
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + Y E I Q+ G EL L E ++ +L FL+D FV+L+DI G+
Sbjct: 5 LTELASYLGEARGNLIAASQMKYG-ELTLTTTGENLIALLTFLRDDAKCGFVNLIDICGV 63
Query: 76 DVPSRPNRFEV 86
D P R RF+V
Sbjct: 64 DWPQRELRFDV 74
>sp|Q215I2|NUOC_RHOPB NADH-quinone oxidoreductase subunit C OS=Rhodopseudomonas
palustris (strain BisB18) GN=nuoC PE=3 SV=1
Length = 199
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 14 SHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIA 73
+ L + G+ LP + I G EL L + +V V++FL+D +F+S +D+
Sbjct: 2 TDLAELGETIKAALPAAVSNASIAFG-ELTLTVDAAKIVEVVRFLRDDPRCRFISPIDVT 60
Query: 74 GMDVPSRPNRFEV 86
+D P R NRF+V
Sbjct: 61 AVDYPGRANRFDV 73
>sp|A9IUQ0|NUOC_BART1 NADH-quinone oxidoreductase subunit C OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=nuoC PE=3 SV=1
Length = 203
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
LV+ Y L +E+ G EL ++ + + VL F++D QF++L DI+G+
Sbjct: 6 LVELATYLKNKLGNKLEETVFAFG-ELTIVARLDAITDVLMFVRDDSHCQFINLTDISGV 64
Query: 76 DVPSRPNRFEV 86
D PSR RF+V
Sbjct: 65 DYPSRDKRFDV 75
>sp|Q2K9T3|NUOC_RHIEC NADH-quinone oxidoreductase subunit C OS=Rhizobium etli (strain
CFN 42 / ATCC 51251) GN=nuoC PE=3 SV=1
Length = 200
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + Y E I Q+ G EL L E ++ +L FL+D FV+++DI G+
Sbjct: 5 LTELASYLGEARGNLIAASQLKYG-ELTLTATGENLIALLTFLRDDAKCGFVNMIDICGV 63
Query: 76 DVPSRPNRFEV 86
D P R RF+V
Sbjct: 64 DWPQRELRFDV 74
>sp|O84971|NUOC_RHOCA NADH-quinone oxidoreductase subunit C OS=Rhodobacter capsulatus
GN=nuoC PE=3 SV=1
Length = 199
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L D + A+ P + ++ G EL + + PEG+ ++FL+D +F +LVD+ +
Sbjct: 5 LQDLAAHVAQQRPGDVISAEVVQG-ELTVTVKPEGIADFVRFLRDDAGCRFTTLVDLTAV 63
Query: 76 DVPSRPNRFEV 86
D P R RFE+
Sbjct: 64 DWPERVERFEM 74
>sp|Q6FZY9|NUOC_BARQU NADH-quinone oxidoreductase subunit C OS=Bartonella quintana
(strain Toulouse) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
LV+ Y L +E+ + G EL ++ + + VL F++D QF++L DI+G+
Sbjct: 5 LVELSAYLKNKLGDKLEETILAFG-ELTIVSRLDAITGVLMFVRDDSRCQFINLTDISGV 63
Query: 76 DVPSRPNRFEV 86
D PSR RF+V
Sbjct: 64 DYPSRDKRFDV 74
>sp|A6U7W5|NUOC_SINMW NADH-quinone oxidoreductase subunit C OS=Sinorhizobium medicae
(strain WSM419) GN=nuoC PE=3 SV=1
Length = 201
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + Y E + ++ G EL L E ++ +L FL+D FVS +D+ G+
Sbjct: 5 LNELASYIREARGALVAGSEVRYG-ELTLTTKAESLIALLTFLRDDVQCGFVSFIDVCGV 63
Query: 76 DVPSRPNRFEV 86
D P RP+RF+V
Sbjct: 64 DYPQRPDRFDV 74
>sp|O68854|NUOC1_RHIME NADH-quinone oxidoreductase subunit C 1 OS=Rhizobium meliloti
(strain 1021) GN=nuoC1 PE=3 SV=2
Length = 201
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + Y E I ++ G EL + E ++ +L FL+D FVS +D+ G+
Sbjct: 5 LNELASYLREARGALIADAEVKYG-ELTVTAKAENLIALLTFLRDDVQCGFVSFIDVCGV 63
Query: 76 DVPSRPNRFEV 86
D P RP+RF+V
Sbjct: 64 DYPQRPDRFDV 74
>sp|Q57DU9|NUOC_BRUAB NADH-quinone oxidoreductase subunit C OS=Brucella abortus biovar
1 (strain 9-941) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ + G EL L + ++ VL L+D QFV+L
Sbjct: 1 MSEEALGELSGYIRERLGDAIEEANLAYG-ELTLCVPVASLIGVLTLLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQREKRFDV 75
>sp|Q2YNC7|NUOC_BRUA2 NADH-quinone oxidoreductase subunit C OS=Brucella abortus (strain
2308) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ + G EL L + ++ VL L+D QFV+L
Sbjct: 1 MSEEALGELSGYIRERLGDAIEEANLAYG-ELTLCVPVASLIGVLTLLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQREKRFDV 75
>sp|B2S545|NUOC_BRUA1 NADH-quinone oxidoreductase subunit C OS=Brucella abortus (strain
S19) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70
++ L + Y E L IE+ + G EL L + ++ VL L+D QFV+L
Sbjct: 1 MSEEALGELSGYIRERLGDAIEEANLAYG-ELTLCVPVASLIGVLTLLRDDVQCQFVNLT 59
Query: 71 DIAGMDVPSRPNRFEV 86
DI+G+D P R RF+V
Sbjct: 60 DISGVDYPQREKRFDV 75
>sp|Q28T74|NUOC_JANSC NADH-quinone oxidoreductase subunit C OS=Jannaschia sp. (strain
CCS1) GN=nuoC PE=3 SV=1
Length = 207
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + +Y +E + + + EL + + P +V ++FLK T +F +L+DI +
Sbjct: 5 LKELAEYLSEKRSDDVVSTDVNAMGELSVTVAPAQMVGFIEFLKTDRTCRFSTLIDITAV 64
Query: 76 DVPSRPNRFEV 86
D PSR RF+V
Sbjct: 65 DYPSRDRRFDV 75
>sp|Q3J3F9|NUOC_RHOS4 NADH-quinone oxidoreductase subunit C OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=nuoC PE=3 SV=1
Length = 200
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 41 ELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV 86
EL L ++P +V +++FL+ + +F SLVDI +D P RP RF+V
Sbjct: 29 ELTLDVVPNRIVGLVEFLRSDASCRFSSLVDITAIDHPERPARFDV 74
>sp|A3PIX0|NUOC_RHOS1 NADH-quinone oxidoreductase subunit C OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=nuoC PE=3 SV=1
Length = 200
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 41 ELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV 86
EL L ++P +V +++FL+ + +F SLVDI +D P RP RF+V
Sbjct: 29 ELTLDVVPNRIVGLVEFLRSDASCRFSSLVDITAIDHPERPARFDV 74
>sp|B9KQW2|NUOC_RHOSK NADH-quinone oxidoreductase subunit C OS=Rhodobacter sphaeroides
(strain KD131 / KCTC 12085) GN=nuoC PE=3 SV=1
Length = 200
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 41 ELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV 86
EL L ++P +V +++FL+ + +F SLVDI +D P RP RF+V
Sbjct: 29 ELTLDVVPNRIVGLVEFLRSDASCRFSSLVDITAIDHPERPARFDV 74
>sp|Q37787|NDUS3_BETVU NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta
vulgaris GN=NAD9 PE=2 SV=3
Length = 192
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 21 KYCAEILPK-YIEKVQITS-GDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVP 78
KY E LPK +++K++ + G+ + + + +L FLK H +F L+DI G+D P
Sbjct: 8 KYSWETLPKKWVKKIEKSEHGNRFD--TNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYP 65
Query: 79 SRPNRFEV 86
SR RFEV
Sbjct: 66 SRKRRFEV 73
>sp|Q33994|NDUS3_BETTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta
trigyna GN=NAD9 PE=2 SV=1
Length = 192
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 21 KYCAEILPK-YIEKVQITS-GDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVP 78
KY E LPK +++K++ + G+ + + + +L FLK H +F L+DI G+D P
Sbjct: 8 KYSWETLPKKWVKKIEKSEHGNRFD--TNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYP 65
Query: 79 SRPNRFEV 86
SR RFEV
Sbjct: 66 SRKRRFEV 73
>sp|Q34011|NDUS3_PATWE NADH dehydrogenase [ubiquinone] iron-sulfur protein 3
OS=Patellifolia webbiana GN=NAD9 PE=2 SV=2
Length = 192
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 21 KYCAEILPK-YIEKVQITS-GDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVP 78
KY E LPK +++K++ + G+ + + + +L FLK H +F L+DI G+D P
Sbjct: 8 KYSWETLPKKWVKKIEKSEHGNRFD--TNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYP 65
Query: 79 SRPNRFEV 86
SR RFEV
Sbjct: 66 SRKRRFEV 73
>sp|A7HY47|NUOC_PARL1 NADH-quinone oxidoreductase subunit C OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=nuoC PE=3 SV=1
Length = 200
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L + G++ L + + + G EL +L + + VL+FL+D +F +L+DI +
Sbjct: 5 LAELGEHILGTLEESVLGFHVAFG-ELNVLAQAQSIARVLKFLRDDPACRFGTLLDITAV 63
Query: 76 DVPSRPNRFEV 86
D P RP RF+V
Sbjct: 64 DYPQRPERFDV 74
>sp|Q35322|NDUS3_ORYSJ NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza
sativa subsp. japonica GN=NAD9 PE=2 SV=2
Length = 190
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 21 KYCAEILPK-YIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPS 79
+Y EILPK ++ K++ + + + P+L FLK H + L+DI G+D PS
Sbjct: 8 QYSWEILPKKWVHKMKRSEHGN-RFYTNTDYLFPLLCFLKWHTYTRVQVLIDICGVDYPS 66
Query: 80 RPNRFEV 86
R RFEV
Sbjct: 67 RKRRFEV 73
>sp|A8LIT7|NUOC_DINSH NADH-quinone oxidoreductase subunit C OS=Dinoroseobacter shibae
(strain DFL 12) GN=nuoC PE=3 SV=1
Length = 215
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 40 DELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV 86
DEL ++ P +V ++ FLK T +F +L+DI +D P R RF+V
Sbjct: 37 DELTVVATPNSIVGLVAFLKTDATCKFSTLIDITAVDYPERAQRFDV 83
>sp|A8I3Y9|NUOC_AZOC5 NADH-quinone oxidoreductase subunit C OS=Azorhizobium caulinodans
(strain ATCC 43989 / DSM 5975 / ORS 571) GN=nuoC PE=3
SV=1
Length = 211
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
L D + LP + +I G EL L P+ ++ + FL+D + F +VD+ G
Sbjct: 5 LKDLAAHVTGALPGAVVAHKIAYG-ELTLETTPDHILKLATFLRDDPSCLFTCIVDVCGA 63
Query: 76 DVPSRPNRFEV 86
D P+R RFEV
Sbjct: 64 DYPAREQRFEV 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,855,080
Number of Sequences: 539616
Number of extensions: 1282043
Number of successful extensions: 3433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3335
Number of HSP's gapped (non-prelim): 107
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)