Query psy15410
Match_columns 87
No_of_seqs 108 out of 846
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:18:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mcr_A NADH dehydrogenase, sub 99.6 7.2E-15 2.5E-19 103.1 7.4 72 14-86 75-154 (213)
2 3i9v_5 NADH-quinone oxidoreduc 98.8 1.2E-09 4E-14 76.2 1.6 63 17-86 4-70 (207)
3 3otd_A TRNA(His) guanylyltrans 68.3 18 0.00062 25.8 6.4 43 4-48 42-84 (269)
4 3gdz_A Arginyl-tRNA synthetase 66.9 15 0.00052 22.1 5.2 48 16-64 58-108 (109)
5 2ckc_A Chromodomain-helicase-D 49.2 16 0.00054 21.5 2.8 28 47-83 42-69 (80)
6 2gjf_A Designed protein; proca 47.5 15 0.00051 20.4 2.6 32 39-71 46-77 (78)
7 3mtk_A Diguanylate cyclase/pho 47.2 47 0.0016 20.3 6.9 47 13-60 60-106 (178)
8 1vjq_A Designed protein; struc 46.5 17 0.00058 20.2 2.7 31 39-70 38-68 (79)
9 3a4c_A DNA replication factor 45.7 51 0.0017 20.3 6.6 47 11-59 51-98 (106)
10 1uv7_A General secretion pathw 37.6 67 0.0023 19.4 5.8 48 12-60 21-68 (110)
11 2ebm_A RWD domain-containing p 31.8 77 0.0026 18.9 4.2 62 16-86 15-76 (128)
12 3nf5_A Nucleoporin NUP116; nuc 30.4 67 0.0023 21.1 3.9 43 5-48 112-154 (164)
13 2p1l_B Beclin 1; apoptosis, au 28.0 9.7 0.00033 18.4 -0.4 13 66-78 19-31 (31)
14 3lh2_S 4E10_1VI7A_S0_002_N (T8 27.4 81 0.0028 17.2 4.9 44 20-63 22-65 (76)
15 3pbp_B Nucleoporin NUP116/NSP1 21.9 57 0.002 21.0 2.3 43 5-48 101-143 (148)
16 4axq_A Archaemetzincin; metall 21.7 17 0.00057 23.8 -0.3 68 6-79 9-78 (163)
17 1y8x_B Ubiquitin-activating en 21.3 72 0.0025 19.0 2.5 29 42-70 7-36 (98)
18 3hvw_A Diguanylate-cyclase (DG 20.8 1.5E+02 0.0052 18.0 5.6 46 13-60 54-102 (176)
19 2jsx_A Protein NAPD; TAT, proo 20.4 1.3E+02 0.0046 17.5 3.6 57 14-76 17-73 (95)
No 1
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca}
Probab=99.56 E-value=7.2e-15 Score=103.08 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHh-------cCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCC-CCcee
Q psy15410 14 SHLVDFGKYCAEI-------LPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSR-PNRFE 85 (87)
Q Consensus 14 ~~l~~i~~~L~~~-------fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~-~~RFe 85 (87)
.+++++++.|.+. ||++|.++.+. .+++++.|+++.|.+++++||++++++|++|+||||||||+. ..||+
T Consensus 75 ~~~d~v~d~L~e~l~~~~~~f~~~i~~~~~~-~~eltl~V~~e~l~~v~~~Lkd~~~~~F~~L~dltgVDy~~~~g~rFe 153 (213)
T 3mcr_A 75 AYFDEVADALERSLKEIGTPYDTAISRVVVD-RGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELH 153 (213)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHEEEEEEE-TTEEEEEECGGGHHHHHHHHHHCTTTCCCEEEEEEEEECTTSTTCCEE
T ss_pred ccHHHHHHHHHHHHhhcccccccceeEEEEE-CCEEEEEEcHHHHHHHHHHHHhCcCCCcceEEEEEeecccccCCCeeE
Confidence 3567777777776 55789999888 899999999999999999999999999999999999999984 56898
Q ss_pred e
Q psy15410 86 V 86 (87)
Q Consensus 86 V 86 (87)
|
T Consensus 154 V 154 (213)
T 3mcr_A 154 A 154 (213)
T ss_dssp E
T ss_pred E
Confidence 7
No 2
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5*
Probab=98.80 E-value=1.2e-09 Score=76.23 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCC----CCCceee
Q psy15410 17 VDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPS----RPNRFEV 86 (87)
Q Consensus 17 ~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~----~~~RFeV 86 (87)
..+.+.++++-.+ ++....+++++.|+++.+.+++++||+ ++|++|+|+|||||+. +.+||+|
T Consensus 4 ~~~~~~~~~~~~~----~~~~~~g~~~v~V~~e~l~~v~~~Lk~---~gf~~L~~l~gvD~~~~~~~~~~~f~v 70 (207)
T 3i9v_5 4 ERVLEEARAKGYP----IEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAV 70 (207)
T ss_dssp HHHHHHHHHTTCC----CCBCTTSCBEEECCHHHHHHHHHHHHH---TTCCCEEEEEEEECTTCSSCCSSSEEE
T ss_pred HHHHHHHHhcCCc----eeeccCCcEEEEEcHHHHHHHHHHHHH---CCCCeEEEEEeEECCccCCCCCCeEEE
Confidence 4455566666432 232214899999999999999999996 7899999999999964 4678987
No 3
>3otd_A TRNA(His) guanylyltransferase; polymerase-like PALM domain, catalytic carboxylates; 2.28A {Homo sapiens} PDB: 3otc_A 3otb_A 3ote_A
Probab=68.26 E-value=18 Score=25.78 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=37.9
Q ss_pred ccCCCCHHHhhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcC
Q psy15410 4 IRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIP 48 (87)
Q Consensus 4 ~~~~~~~~~~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~ 48 (87)
..||-|.-..+.+..-+..|.+.|++.+..... .+|.++...+
T Consensus 42 F~KPnD~r~l~lM~~aA~~lm~~~~~i~~aYg~--SDEiSfvf~~ 84 (269)
T 3otd_A 42 FAKPNDSRALQLMTKCAQTVMEELEDIVIAYGQ--SDEYSFVFKR 84 (269)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHSSSEEEEEEE--TTEEEEEECT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEec--CcEEEEEECC
Confidence 569999999999999999999999987777766 4999999976
No 4
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=66.88 E-value=15 Score=22.08 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcC--CceeEEEEeeC-CeEEEEEcCCChHHHHHHhhcCccC
Q psy15410 16 LVDFGKYCAEILP--KYIEKVQITSG-DELELLIIPEGVVPVLQFLKDHHTA 64 (87)
Q Consensus 16 l~~i~~~L~~~fp--~~i~~~~~~~~-~el~i~i~~e~l~~vl~fLKdd~~l 64 (87)
-.++++.|.+.++ +.+.++++. + |-+-+.++++.+.+++.-...++.+
T Consensus 58 P~~iA~~i~~~l~~~~~i~~veva-gpGFINf~l~~~~~~~~l~~il~~~~l 108 (109)
T 3gdz_A 58 PRQLAEQVLSHLDLNGIANKVEIA-GPGFINIFLDPAFLADNVNRALQSERL 108 (109)
T ss_dssp HHHHHHHHHHHCCCTTTEEEEEEE-TTTEEEEEECHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCcCCcEeEEEEe-CCCeEEEEECHHHHHHHHHHHHhcccC
Confidence 4567888888887 357888876 4 7999999999999988887666553
No 5
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=49.19 E-value=16 Score=21.51 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=20.7
Q ss_pred cCCChHHHHHHhhcCccCCccccccceeeeCCCCCCc
Q psy15410 47 IPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNR 83 (87)
Q Consensus 47 ~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~R 83 (87)
++-...+++.|||.+|+ ..||+|.-.++
T Consensus 42 ~AP~~KdL~dWLrqhP~---------y~vD~p~f~p~ 69 (80)
T 2ckc_A 42 DAPKNKDLVEWLKLHPT---------YTVDMPSYVPK 69 (80)
T ss_dssp SSCBHHHHHHHHHHCTT---------EEESCCCCCCC
T ss_pred cCccccCHHHHHHHCCC---------cEEecCCcccc
Confidence 34457899999999998 46777765444
No 6
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=47.46 E-value=15 Score=20.39 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCChHHHHHHhhcCccCCcccccc
Q psy15410 39 GDELELLIIPEGVVPVLQFLKDHHTAQFVSLVD 71 (87)
Q Consensus 39 ~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~D 71 (87)
+...-|.|+++.+..+..+|+.. ++.|+.+++
T Consensus 46 ~~~vdI~V~p~~~~~f~~~L~~~-~I~y~Vlie 77 (78)
T 2gjf_A 46 GQPVVILIPSDMVEWFLEMLKAK-GIPFTVYVE 77 (78)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHH-TCCEEEEEE
T ss_pred CCeEEEEECHHHHHHHHHHHHHC-CCcEEEEeC
Confidence 35688999999999999999975 577777653
No 7
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=47.19 E-value=47 Score=20.35 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhc
Q psy15410 13 RSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKD 60 (87)
Q Consensus 13 ~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKd 60 (87)
+..|..+++.|++.+++.-.-.... +++..+.++.+.+..+++-|+.
T Consensus 60 d~lL~~ia~~L~~~~~~~~~~~R~~-~d~F~il~~~~~~~~~~~~l~~ 106 (178)
T 3mtk_A 60 DELIIHISKRIKDIAGEGNKAFKIG-FDRFAIICKSENISDFIERMLS 106 (178)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEEE-TTEEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEec-CCEEEEEecCccHHHHHHHHHH
Confidence 4567889999999997544445566 7888888877777776666654
No 8
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=46.47 E-value=17 Score=20.16 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCChHHHHHHhhcCccCCccccc
Q psy15410 39 GDELELLIIPEGVVPVLQFLKDHHTAQFVSLV 70 (87)
Q Consensus 39 ~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~ 70 (87)
+...-|.|+++.+..+..+|+.+ +..|+.++
T Consensus 38 ~~~~di~V~p~~~~~f~~~L~~~-~i~~~v~i 68 (79)
T 1vjq_A 38 GQPVVILIPSDMVEWFLEMLKAK-GIPFTVYV 68 (79)
T ss_dssp TCCEEEEECGGGHHHHHHHHHHT-TCCEEEEE
T ss_pred CCcEEEEECHHHHHHHHHHHHHC-CCcEEEEe
Confidence 45688999999999999999976 67888775
No 9
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=45.70 E-value=51 Score=20.29 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=36.9
Q ss_pred HHhhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCC-ChHHHHHHhh
Q psy15410 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPE-GVVPVLQFLK 59 (87)
Q Consensus 11 ~~~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e-~l~~vl~fLK 59 (87)
++.+-+++..+.|.+..|+|+.-..+ +....+.++++ .+-.+++-|-
T Consensus 51 ls~~EmE~hl~lL~ellPdWls~~~v--R~~~ylKl~k~~dl~~i~~rLe 98 (106)
T 3a4c_A 51 LSPGEMEKHLVLLAELLPDWLSLHRI--RTDTYVKLDKAVDLAGLTARLA 98 (106)
T ss_dssp CCHHHHHHHHHHHHHHCTTTEEEEEE--TTEEEEEECTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcchheeeee--eccceeeeehhhhHHHHHHHHH
Confidence 45567788889999999999977777 47778889888 6777776664
No 10
>1uv7_A General secretion pathway protein M; transport; HET: MSE; 1.7A {Vibrio cholerae} SCOP: d.67.4.1
Probab=37.60 E-value=67 Score=19.38 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=38.9
Q ss_pred HhhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhc
Q psy15410 12 ARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKD 60 (87)
Q Consensus 12 ~~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKd 60 (87)
...+|..+...=...++-.+.-+... ++.+.+++++-.+-.++.||.+
T Consensus 21 ~~~~L~~~v~~Sa~~~gL~i~R~qp~-g~~vqV~l~~v~F~~L~~WL~~ 68 (110)
T 1uv7_A 21 SDQPLNQVITNSTRQFNIELIRVQPR-GEMMQVWIQPLPFSQLVSWIAY 68 (110)
T ss_dssp --CCHHHHHHHHHHHHTCCEEEEEEC-SSEEEEEECCBCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHCCCeEEEecCC-CCEEEEEECCCCHHHHHHHHHH
Confidence 34567777777788888777778777 7799999999999999999986
No 11
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.81 E-value=77 Score=18.86 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCCCceee
Q psy15410 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV 86 (87)
Q Consensus 16 l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV 86 (87)
..+=.+.|.+.||+.+...... .....|.+.++.-- .++...+.+...+. -+||...+.+.+
T Consensus 15 q~~EleaL~sIy~d~~~~~~~~-~~~~~i~i~~~~~~-------~~~~~~~~L~v~~p-~~YP~~~P~i~l 76 (128)
T 2ebm_A 15 QRNELEALESIYPDSFTVLSEN-PPSFTITVTSEAGE-------NDETVQTTLKFTYS-EKYPDEAPLYEI 76 (128)
T ss_dssp HHHHHHHHHHHCSSSEEECCSS-SCEEEECCBCCCCT-------TSCCCBEEEEEECC-SSTTTSCCEEEE
T ss_pred HHHHHHHHHHHccCceEEccCC-CCEEEEEEecCCCC-------CcCceeEEEEEEeC-CCCCCCCceEEE
Confidence 3344588999999866433222 23455555543100 01122233333333 379988887765
No 12
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=30.41 E-value=67 Score=21.07 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=32.7
Q ss_pred cCCCCHHHhhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcC
Q psy15410 5 RKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIP 48 (87)
Q Consensus 5 ~~~~~~~~~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~ 48 (87)
|+||..-+...+....++|++.-+....++... .|..++.|+.
T Consensus 112 ~~pi~d~~~~~~~~~i~rLk~~~g~~FvsYd~~-tG~W~F~V~H 154 (164)
T 3nf5_A 112 RKPIKDPNHRIMERYSEKLKKIPHTHFESYDPA-SGTYCFTVDH 154 (164)
T ss_dssp CCBCCCTTSTHHHHHHHHHHHCTTCEEEEEETT-TTEEEEEESS
T ss_pred CccccCcchHHHHHHHHHHhccCCCEEEEEeCC-CcEEEEEEcc
Confidence 567766666678888999999877666677666 6888888864
No 13
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=27.97 E-value=9.7 Score=18.44 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=4.9
Q ss_pred ccccccceeeeCC
Q psy15410 66 FVSLVDIAGMDVP 78 (87)
Q Consensus 66 F~~L~DItgVDyp 78 (87)
|+.|+.=+-||||
T Consensus 19 FdILS~~sdIDhP 31 (31)
T 2p1l_B 19 FDIMSGQTDVDHP 31 (31)
T ss_dssp HHHTTC-------
T ss_pred HHHHhCCCcCCCC
Confidence 7888888888887
No 14
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=27.40 E-value=81 Score=17.17 Aligned_cols=44 Identities=11% Similarity=-0.042 Sum_probs=27.9
Q ss_pred HHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCcc
Q psy15410 20 GKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHT 63 (87)
Q Consensus 20 ~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~ 63 (87)
.+++.+.++-.|.+......-.+++.++++..-.+...|.+-..
T Consensus 22 v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~ 65 (76)
T 3lh2_S 22 ILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSG 65 (76)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhC
Confidence 34555667766766554424567778899998888888876443
No 15
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=21.94 E-value=57 Score=20.96 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=30.2
Q ss_pred cCCCCHHHhhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcC
Q psy15410 5 RKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIP 48 (87)
Q Consensus 5 ~~~~~~~~~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~ 48 (87)
|+||..-++..+....++|+++-+....++... .|..++.|+.
T Consensus 101 ~~~i~d~~~~~~~~~i~rlk~~~g~~FvsYd~~-tG~W~F~V~H 143 (148)
T 3pbp_B 101 RKPIKDPNHQLVKRHIERLKKNPNSKFESYDAD-SGTYVFIVNH 143 (148)
T ss_dssp CCBCCCTTSHHHHHHHHHHTSCSSSEEEEECTT-TCCEEEEESC
T ss_pred cccccCcchHHHHHHHHHHhhcCCCEEEEEeCC-CcEEEEEeee
Confidence 567766666667788888888777656666555 6788887754
No 16
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A*
Probab=21.68 E-value=17 Score=23.76 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=39.8
Q ss_pred CCCCHHHhhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCC--ChHHHHHHhhcCccCCccccccceeeeCCC
Q psy15410 6 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPE--GVVPVLQFLKDHHTAQFVSLVDIAGMDVPS 79 (87)
Q Consensus 6 ~~~~~~~~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e--~l~~vl~fLKdd~~l~F~~L~DItgVDyp~ 79 (87)
-||+ +....++.+.+.|.+.||-.|.-...-+.......-.+. +.-.++.+|+.. +...-+|++|...
T Consensus 9 vpig-v~~~~l~~l~~~l~~~~gl~v~~~~~~~~~~~~~d~~r~Q~~a~~il~~l~~~-----d~~~~lt~~Dly~ 78 (163)
T 4axq_A 9 QPLS-VNSHTVEVLANSLPKIFNAEVFVLPASDVSLKCYNASRRQYNSTCILRMLPPI-----KVTLGVTGKDIYA 78 (163)
T ss_dssp EEES-CCHHHHHHHHHHHHHHHTEEEEECCCBCCCGGGEETTTTEEEHHHHHHHSCCC-----SSEEEEESSCEEC
T ss_pred EECC-CCHHHHHHHHHHHHHHhCCeeEecCCCCCchhccCCCcceeeHHHHHHHHHhc-----CeEEEEEecccCc
Confidence 4777 888889999999999998333211100000000111122 355788888764 6666788888443
No 17
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=21.28 E-value=72 Score=19.05 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=21.6
Q ss_pred EEEEEcCC-ChHHHHHHhhcCccCCccccc
Q psy15410 42 LELLIIPE-GVVPVLQFLKDHHTAQFVSLV 70 (87)
Q Consensus 42 l~i~i~~e-~l~~vl~fLKdd~~l~F~~L~ 70 (87)
..+.++++ -+-+++..|.++|+++++-=+
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PS 36 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPA 36 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCe
Confidence 34566555 478999999999998776544
No 18
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=20.78 E-value=1.5e+02 Score=17.95 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEc---CCChHHHHHHhhc
Q psy15410 13 RSHLVDFGKYCAEILPKYIEKVQITSGDELELLII---PEGVVPVLQFLKD 60 (87)
Q Consensus 13 ~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~---~e~l~~vl~fLKd 60 (87)
+..|..+++.|++.+++ -.-.... +++..+.++ .+.+..+++-|+.
T Consensus 54 D~~L~~ia~~L~~~~~~-~~v~R~~-~deF~ill~~~~~~~~~~~~~~l~~ 102 (176)
T 3hvw_A 54 NDLMLEARDRIRAELPD-FTLYKIS-PTRFGLLLPRQQQEETESVCLRLLR 102 (176)
T ss_dssp HHHHHHHHHHHHHHCTT-SCEEEEE-TTEEEEEEEGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CeEEEec-CCEEEEEeCCCCHHHHHHHHHHHHH
Confidence 45678899999999998 4445566 788888774 3355556665554
No 19
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=20.41 E-value=1.3e+02 Score=17.52 Aligned_cols=57 Identities=7% Similarity=0.115 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeee
Q psy15410 14 SHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMD 76 (87)
Q Consensus 14 ~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVD 76 (87)
..+..+.+.|.+.=+-.|...... .|.+.+++..+...++.+.++. .+-+-.+..+.
T Consensus 17 ~~~~~V~~~L~~ipgvEi~~~~~~-~GkiVV~iEa~~~~~l~~~i~~-----I~~i~GVlst~ 73 (95)
T 2jsx_A 17 ERISDISTQLNAFPGCEVAVSDAP-SGQLIVVVEAEDSETLIQTIES-----VRNVEGVLAVS 73 (95)
T ss_dssp TSHHHHHHHHTTSTTEEEEEEETT-TTEEEEEEEESSHHHHHHHHHH-----HTTSTTEEEEE
T ss_pred CCHHHHHHHHHCCCCeEEEEecCC-CCCEEEEEEeCCHHHHHHHHHH-----HhcCCCccEEe
Confidence 445666666765544222112222 4789999999998888887754 33444444443
Done!