RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15410
         (87 letters)



>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center
           for structural genomics, J protein structure initiative,
           PSI-2; 2.65A {Thermobifida fusca}
          Length = 213

 Score = 75.6 bits (186), Expect = 1e-18
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 7   PIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQF 66
             DEVA + L    K         I +V +  G E+   +  E ++ V   L+D    +F
Sbjct: 76  YFDEVADA-LERSLKEIGTPYDTAISRVVVDRG-EITFHVQREHLLDVATRLRDDPALRF 133

Query: 67  VSLVDIAGMDVPSRP-NRFEV 86
              + + G+  P    N    
Sbjct: 134 ELCLGVTGVHYPEDEGNELHA 154


>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport,
          respiratory chain, cell flavoprotein, FMN, iron,
          iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
          thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5*
          3m9s_5*
          Length = 207

 Score = 54.0 bits (130), Expect = 1e-10
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 17 VDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMD 76
          +   +   E   K    ++      L +++  E     +   K      F  L DI G+D
Sbjct: 1  MRLERVLEEARAKGY-PIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLD 56

Query: 77 VPS----RPNRFEV 86
            +    RP RF V
Sbjct: 57 YLTYPDPRPERFAV 70


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.071
 Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 5/22 (22%)

Query: 4   IRKPID-----EVARSHLVDFG 20
           IR P+      +   +H++DFG
Sbjct: 484 IRLPVKWETTTQFKATHILDFG 505



 Score = 28.1 bits (62), Expect = 0.37
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 27/78 (34%)

Query: 7    PIDEVARSHL----VDFGK----YCAEILPKYIEKVQITSGDELELLI----IP------ 48
            P DE+ RS+     ++ G+    +  E L   +E+V   +G  +E  I    +       
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE--IVNYNVENQQYVA 1855

Query: 49   -------EGVVPVLQFLK 59
                   + V  VL F+K
Sbjct: 1856 AGDLRALDTVTNVLNFIK 1873


>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection,
          cytoplasm, cytoskeleton, membrane, phosphoprotein,
          structural protein; NMR {Mus musculus}
          Length = 128

 Score = 27.8 bits (61), Expect = 0.27
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 6  KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLI 46
          + +D   ++ +VD  K   ++L     ++ IT+ DE  L+ 
Sbjct: 17 RMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 57


>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
          OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
          Length = 396

 Score = 25.1 bits (56), Expect = 3.1
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 9/35 (25%)

Query: 49 EGVVPV----LQFLKDHHTAQ-----FVSLVDIAG 74
          E  VPV      FL  +H        F+++VDIAG
Sbjct: 61 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95


>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
          GTP1OBG, PSI, protein structure initiative; 2.80A
          {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
          Length = 392

 Score = 25.2 bits (56), Expect = 3.4
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 9/35 (25%)

Query: 49 EGVVPV----LQFLKDHHTAQ-----FVSLVDIAG 74
          E  V V      +L + +  +     F+++ DIAG
Sbjct: 60 EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94


>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
           protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
           c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
           2zhc_A* 3iku_A 3iky_A
          Length = 320

 Score = 24.8 bits (53), Expect = 4.6
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 7   PIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDEL---ELLIIPEGVVPVLQFLKDHHT 63
           P+ E    +     +        + +K+ +  GD     ++ ++PE +    + L++   
Sbjct: 103 PLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDE 162

Query: 64  AQFVSLVDIAG 74
              + ++D+ G
Sbjct: 163 LDSLLIIDLGG 173


>1yhp_A Ddcad-1, GP24, calcium-dependent cell adhesion molecule-1; NMR
           {Dictyostelium discoideum} PDB: 2b1o_A
          Length = 212

 Score = 24.1 bits (51), Expect = 8.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 20  GKYCAEILPKYIEKVQITSGDELELLIIPE 49
           G Y   I P  ++KV    GD+   L IP+
Sbjct: 112 GSYEMTITPYQVDKVACKDGDDFVQLPIPK 141


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.141    0.410 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,423,607
Number of extensions: 75240
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 15
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)