RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15410
         (87 letters)



>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5,
          Nqo5 {Thermus thermophilus [TaxId: 274]}
          Length = 196

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 33 KVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFE 85
           ++      L +++  E     +   K      F  L DI G+D  + P+   
Sbjct: 16 PIEDNGLGNLWVVLPRERFKEEMAHYKAM---GFNFLADIVGLDYLTYPDPRP 65


>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase
          {Moorella thermoacetica [TaxId: 1525]}
          Length = 549

 Score = 27.1 bits (60), Expect = 0.25
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 6  KPIDEVAR------SHLVDFGKYCAEILPKYIEKVQ 35
          KP+ E+AR        +  +GKY A+I      +++
Sbjct: 11 KPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLK 46


>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 328

 Score = 26.2 bits (57), Expect = 0.58
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 10/42 (23%)

Query: 54  VLQFLKDHHTAQFVSLVDIAGMD-----VPSRPNR---FEVD 87
           +L+FL  +   Q V+L    G D     +          ++D
Sbjct: 88  ILEFLVANEKVQVVNLG--CGSDLRMLPLLQMFPHLAYVDID 127


>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn
          {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 91

 Score = 22.8 bits (49), Expect = 4.6
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 11 VARSHLVDFGKYCAEILPKYIEKVQITSGDELEL 44
          VA ++  D G     +       +    GD +E+
Sbjct: 11 VAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEI 44


>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
           [TaxId: 562]}
          Length = 620

 Score = 23.0 bits (48), Expect = 8.5
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 18  DFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKD 60
           D GK     LP+   +  +T+  E  L  I E       F++ 
Sbjct: 552 DAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQP 594


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.410 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 336,997
Number of extensions: 13781
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 6
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)