BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15414
(1458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-trna Synthetase Complexed
With The Trna(arg) And L-arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase Complexed
With The Trnaarg
Length = 607
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 147/526 (27%), Positives = 237/526 (45%), Gaps = 46/526 (8%)
Query: 563 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQPPTLNKKLRVLVDFSSPNIAKE 618
++K+E P F + A I DI+ G NKK V+++FSSPNIAK
Sbjct: 100 LEKVEANGPFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKK--VIIEFSSPNIAKP 157
Query: 619 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 678
H GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+L + + PI
Sbjct: 158 FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPI 217
Query: 679 ADLQAFYKESKKRFDE-------DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDF 731
L Y K +E ++ +A + ++ D + K W+ + S +
Sbjct: 218 HHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKY 277
Query: 732 QKIYDRLNVTL-TERGESFYQKH-MEQLVPYLEKKGLLELDDGRKIM----WGEDRGSIP 785
Y RLN+ GES K M + + ++KGL D G ++ + + G
Sbjct: 278 IDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGK-- 335
Query: 786 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPN 845
+ KSDG Y T D+ A R E+ D ++YV Q +H E K+ G
Sbjct: 336 AIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGF--EW 393
Query: 846 KTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKL-KDKNRHTELTPTEL 904
+ V FG+V G TR G V L +L+E + + + K++N++ ++ E
Sbjct: 394 AKDLQHVNFGMVQG-----MSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPE- 447
Query: 905 SEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 964
E V + D+ R +Y F +++ML G+T YL YA++R+ S+ R A
Sbjct: 448 -EVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGI 506
Query: 965 SEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH----LCEYLYDISTA 1020
+++ + A + + KE A AK L+R+ V R+ H + YL+ ++
Sbjct: 507 TQEKWINADFSLL-----KEPA-AKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQ 560
Query: 1021 FSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066
S YD + G+ + + T RL L A +V+ +L +
Sbjct: 561 VSSCYDVLWV-----AGQTEELATARLALYGAARQVLYNGMRLLGL 601
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 128/275 (46%), Gaps = 21/275 (7%)
Query: 173 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQPPTLNKKLRVLVDFSSPNIAKE 228
++K+E P F + A I DI+ G NKK V+++FSSPNIAK
Sbjct: 100 LEKVEANGPFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKK--VIIEFSSPNIAKP 157
Query: 229 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 288
H GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+L + + PI
Sbjct: 158 FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPI 217
Query: 289 ADLQAFYKESKKRFDE-------DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDF 341
L Y K +E ++ +A + ++ D + K W+ + S +
Sbjct: 218 HHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKY 277
Query: 342 QKIYDRLNVTL-TERGESFYQKH-MEQLVPYLEKKGLLELDDGRKIM----WGEDRGSIP 395
Y RLN+ GES K M + + ++KGL D G ++ + + G
Sbjct: 278 IDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGK-- 335
Query: 396 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 430
+ KSDG Y T D+ A R E+ D ++YV
Sbjct: 336 AIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYV 370
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 128/275 (46%), Gaps = 21/275 (7%)
Query: 1190 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQPPTLNKKLRVLVDFSSPNIAKE 1245
++K+E P F + A I DI+ G NKK V+++FSSPNIAK
Sbjct: 100 LEKVEANGPFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKK--VIIEFSSPNIAKP 157
Query: 1246 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 1305
H GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+L + + PI
Sbjct: 158 FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPI 217
Query: 1306 ADLQAFYKESKKRFDE-------DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDF 1358
L Y K +E ++ +A + ++ D + K W+ + S +
Sbjct: 218 HHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKY 277
Query: 1359 QKIYDRLNVTL-TERGESFYQKH-MEQLVPYLEKKGLLELDDGRKIM----WGEDRGSIP 1412
Y RLN+ GES K M + + ++KGL D G ++ + + G
Sbjct: 278 IDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGK-- 335
Query: 1413 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 1447
+ KSDG Y T D+ A R E+ D ++YV
Sbjct: 336 AIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYV 370
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 123 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 182
K GDF A L K+ K + P +IA+ I + L K ++ G
Sbjct: 37 KLGDFGTPIAFKLAKLLK-----RPPIEIAEKIVEKLKLNLPEGIKDVKAVN-------G 84
Query: 183 FVNVFLSRV-YAGEQIKDIIVNG--VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 239
++NVF+ +A I DI+ G + K +V+V+ +S N K +H+GH R+ I+
Sbjct: 85 YINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAIL 144
Query: 240 GDTISRLLEYLGHDVVRLNHVGDWGTQFG 268
GD ++R+L +LG++V N++ D G QF
Sbjct: 145 GDVMARILRFLGYEVEVQNYIDDLGIQFA 173
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 513 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 572
K GDF A L K+ K + P +IA+ I + L K ++ G
Sbjct: 37 KLGDFGTPIAFKLAKLLK-----RPPIEIAEKIVEKLKLNLPEGIKDVKAVN-------G 84
Query: 573 FVNVFLSRV-YAGEQIKDIIVNG--VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 629
++NVF+ +A I DI+ G + K +V+V+ +S N K +H+GH R+ I+
Sbjct: 85 YINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAIL 144
Query: 630 GDTISRLLEYLGHDVVRLNHVGDWGTQFG 658
GD ++R+L +LG++V N++ D G QF
Sbjct: 145 GDVMARILRFLGYEVEVQNYIDDLGIQFA 173
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 1140 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 1199
K GDF A L K+ K + P +IA+ I + L K ++ G
Sbjct: 37 KLGDFGTPIAFKLAKLLK-----RPPIEIAEKIVEKLKLNLPEGIKDVKAVN-------G 84
Query: 1200 FVNVFLSRV-YAGEQIKDIIVNG--VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 1256
++NVF+ +A I DI+ G + K +V+V+ +S N K +H+GH R+ I+
Sbjct: 85 YINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAIL 144
Query: 1257 GDTISRLLEYLGHDVVRLNHVGDWGTQFG 1285
GD ++R+L +LG++V N++ D G QF
Sbjct: 145 GDVMARILRFLGYEVEVQNYIDDLGIQFA 173
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 106/210 (50%), Gaps = 17/210 (8%)
Query: 864 KFKTRSGDTVKLS--ELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 921
KF R G V + E++ E ++R+ + +++KN L+ E +E + V G I+Y +
Sbjct: 424 KFSGRKGTWVGFTVDEVIQEAVKRARELIEEKN--PALSDEEKAEVAEKVGIGAIRYNLI 481
Query: 922 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA-----GINSEDLRVAAQSTP 976
++ + +F ++ +L+ G +A Y+ YA+ R +SI R A ++ E L A T
Sbjct: 482 KYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTK 541
Query: 977 VSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE 1036
+S E+E L L + ++ +D+ H + + ++++ F++FY + + + K E
Sbjct: 542 LS---ERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMD-HPVLKAEE 597
Query: 1037 GKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066
G V RLLL A +V+K ++ I
Sbjct: 598 G----VREARLLLVMAVEQVLKNALYLMGI 623
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase From
Campylobacter Jejuni
Length = 464
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 113/499 (22%), Positives = 200/499 (40%), Gaps = 108/499 (21%)
Query: 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML- 660
K+ L+++ S N +H+GH R + GDT++RL +LG+ +V D G Q +L
Sbjct: 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLG 87
Query: 661 ----------IAHLQDKFPDYLTKSPPIADL--QAFYKESKKRFDEDEI--FKKRAYQCV 706
I H ++P+ K I DL +AF K K+ F E+ I A +
Sbjct: 88 LSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKM 147
Query: 707 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 766
+ L + + + K ++ VS R + YD LN TL + +++ E++G
Sbjct: 148 LVLIKQNLEQAKI-KIDSYVSERSY---YDALNATL---------ESLKEHKGIYEQEGK 194
Query: 767 LELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD-LGQ 825
+ L +K G+++ + I++ DG TY +D IVY D + +
Sbjct: 195 IWLASSQK---GDEKDRV---IIREDGRGTYLAAD---------------IVYHKDKMSR 233
Query: 826 GVHFRLLEECAKKAGILNPNKTRMDFVGFG-----------VVLGEDRKKFKT--RSGDT 872
G + A G + K M+F+GF V L +D + +K R+G+
Sbjct: 234 GYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNF 293
Query: 873 VKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH--NRNLDYV 930
+ +S+++DE + ++Y LS + +L++
Sbjct: 294 ILMSDVVDE-----------------------------IGSDALRYIFLSKKCDTHLEFD 324
Query: 931 FSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED-LRVAAQSTPVSLEHEKEFALAK 989
S D +D N Y+ YA+ RI + AG +D ++ QS ++ L
Sbjct: 325 IS-DLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSL-----NQDGVNLLF 378
Query: 990 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1049
L + VL L + +YL +++ F +FY+ + E + L L
Sbjct: 379 EALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDL-------LKL 431
Query: 1050 AEATAKVMKKCFDILNIRT 1068
A +K F ++ I
Sbjct: 432 FSLVALSIKTAFSLMGIEA 450
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 212 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML- 270
K+ L+++ S N +H+GH R + GDT++RL +LG+ +V D G Q +L
Sbjct: 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLG 87
Query: 271 ----------IAHLQDKFPDYLTKSPPIADL--QAFYKESKKRFDEDEI--FKKRAYQCV 316
I H ++P+ K I DL +AF K K+ F E+ I A +
Sbjct: 88 LSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKM 147
Query: 317 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 376
+ L + + + K ++ VS R + YD LN TL + +++ E++G
Sbjct: 148 LVLIKQNLEQAKI-KIDSYVSERSY---YDALNATL---------ESLKEHKGIYEQEGK 194
Query: 377 LELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI-VYVTDHRS 435
+ L +K G+++ + I++ DG TY +D+ + ++ I ++ DH
Sbjct: 195 IWLASSQK---GDEKDRV---IIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHG 248
Query: 436 YHQVLQAIAE 445
Y ++A E
Sbjct: 249 YIPRMKAAME 258
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 35/241 (14%)
Query: 1229 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML- 1287
K+ L+++ S N +H+GH R + GDT++RL +LG+ +V D G Q +L
Sbjct: 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLG 87
Query: 1288 ----------IAHLQDKFPDYLTKSPPIADL--QAFYKESKKRFDEDEI--FKKRAYQCV 1333
I H ++P+ K I DL +AF K K+ F E+ I A +
Sbjct: 88 LSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKM 147
Query: 1334 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 1393
+ L + + + K ++ VS R + YD LN TL + +++ E++G
Sbjct: 148 LVLIKQNLEQAKI-KIDSYVSERSY---YDALNATL---------ESLKEHKGIYEQEGK 194
Query: 1394 LELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI-VYVTDHRS 1452
+ L +K G+++ + I++ DG TY +D+ + ++ I ++ DH
Sbjct: 195 IWLASSQK---GDEKDRV---IIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHG 248
Query: 1453 Y 1453
Y
Sbjct: 249 Y 249
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 852 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAV 911
+ + VL E R+ R G V + E+L+E RR+ +++KN + EA + V
Sbjct: 383 LAYETVLLEGRQ-MSGRKGLAVSVDEVLEEATRRARAIVEEKNPDH----PDKEEAARMV 437
Query: 912 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG-INSEDLRV 970
A G I+++ + F + + L G+T Y+ YA+ R SI R AG + DL
Sbjct: 438 ALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDL-- 495
Query: 971 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1030
+Q+TP E ALA LL + ++ + H L +YL D++ +++ +Y+
Sbjct: 496 -SQATPY------ERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNAREN 548
Query: 1031 IEKDAEGKIKTVHTG----RLLLAEATAKVMKKCFDILNI 1066
+ + T G RL L ++ + + D+L I
Sbjct: 549 GQPAT--PVLTAPEGLRELRLSLVQSLQRTLATGLDLLGI 586
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 216 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 266
VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 105 VLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQ 155
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 606 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 656
VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 105 VLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQ 155
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 1233 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 1283
VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 105 VLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQ 155
>pdb|3GDZ|A Chain A, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|B Chain B, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|C Chain C, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|D Chain D, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
Length = 109
Score = 37.0 bits (84), Expect = 0.074, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 123 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 182
+FGD+Q N A+ K P +A+ + S + L + +K+E+A PG
Sbjct: 38 QFGDYQANGVXAVAKKLGXA-----PRQLAEQVLS--------HLDLNGIANKVEIAGPG 84
Query: 183 FVNVFLSRVYAGEQI 197
F+N+FL + + +
Sbjct: 85 FINIFLDPAFLADNV 99
Score = 37.0 bits (84), Expect = 0.074, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 513 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 572
+FGD+Q N A+ K P +A+ + S + L + +K+E+A PG
Sbjct: 38 QFGDYQANGVXAVAKKLGXA-----PRQLAEQVLS--------HLDLNGIANKVEIAGPG 84
Query: 573 FVNVFLSRVYAGEQI 587
F+N+FL + + +
Sbjct: 85 FINIFLDPAFLADNV 99
Score = 37.0 bits (84), Expect = 0.074, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 1140 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 1199
+FGD+Q N A+ K P +A+ + S + L + +K+E+A PG
Sbjct: 38 QFGDYQANGVXAVAKKLGXA-----PRQLAEQVLS--------HLDLNGIANKVEIAGPG 84
Query: 1200 FVNVFLSRVYAGEQI 1214
F+N+FL + + +
Sbjct: 85 FINIFLDPAFLADNV 99
>pdb|2IMP|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Ternary Complex With Product Bound (L)-Lactate
And Nadh.
pdb|2ILU|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Binary Complex With Nadph
Length = 479
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 109 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 168
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 169 LAKV 172
+A V
Sbjct: 222 VAMV 225
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 499 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 558
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 559 LAKV 562
+A V
Sbjct: 222 VAMV 225
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 1126 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 1185
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 1186 LAKV 1189
+A V
Sbjct: 222 VAMV 225
>pdb|2OPX|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From
Escherichia Coli
Length = 479
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 109 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 168
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 169 LAKV 172
+A V
Sbjct: 222 VAMV 225
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 499 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 558
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 559 LAKV 562
+A V
Sbjct: 222 VAMV 225
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 1126 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 1185
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 1186 LAKV 1189
+A V
Sbjct: 222 VAMV 225
>pdb|2HG2|A Chain A, Structure Of Lactaldehyde Dehydrogenase
Length = 479
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 109 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 168
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 169 LAKV 172
+A V
Sbjct: 222 VAMV 225
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 499 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 558
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 559 LAKV 562
+A V
Sbjct: 222 VAMV 225
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 1126 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 1185
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 1186 LAKV 1189
+A V
Sbjct: 222 VAMV 225
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 208 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 267
P K VLV F P+ ++H+GHL++ +GD ++R G++V+ H W F
Sbjct: 29 PGGRGKQYVLVMFPYPS--GDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-F 82
Query: 268 GMLIAHLQDKF 278
G+ + KF
Sbjct: 83 GLPAENAALKF 93
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 598 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 657
P K VLV F P+ ++H+GHL++ +GD ++R G++V+ H W F
Sbjct: 29 PGGRGKQYVLVMFPYPS--GDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-F 82
Query: 658 GMLIAHLQDKF 668
G+ + KF
Sbjct: 83 GLPAENAALKF 93
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 1225 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 1284
P K VLV F P+ ++H+GHL++ +GD ++R G++V+ H W F
Sbjct: 29 PGGRGKQYVLVMFPYPS--GDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-F 82
Query: 1285 GMLIAHLQDKF 1295
G+ + KF
Sbjct: 83 GLPAENAALKF 93
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 208 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 267
P K VLV F P+ ++H+GHL++ +GD ++R G++V+ H W F
Sbjct: 29 PGGRGKQYVLVMFPYPS--GDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-F 82
Query: 268 GMLIAHLQDKF 278
G+ + KF
Sbjct: 83 GLPAENAALKF 93
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 598 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 657
P K VLV F P+ ++H+GHL++ +GD ++R G++V+ H W F
Sbjct: 29 PGGRGKQYVLVMFPYPS--GDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-F 82
Query: 658 GMLIAHLQDKF 668
G+ + KF
Sbjct: 83 GLPAENAALKF 93
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 1225 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 1284
P K VLV F P+ ++H+GHL++ +GD ++R G++V+ H W F
Sbjct: 29 PGGRGKQYVLVMFPYPS--GDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-F 82
Query: 1285 GMLIAHLQDKF 1295
G+ + KF
Sbjct: 83 GLPAENAALKF 93
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 223 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 256
P + +H+GH+R+ IGD I+R LG +V++
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ 95
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 613 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 646
P + +H+GH+R+ IGD I+R LG +V++
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ 95
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1240 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 1273
P + +H+GH+R+ IGD I+R LG +V++
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ 95
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 212 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 255
KK + V F P ++ +HVGH R+ I D I+R G++V+
Sbjct: 34 KKFYITVAF--PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 645
KK + V F P ++ +HVGH R+ I D I+R G++V+
Sbjct: 34 KKFYITVAF--PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 1229 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 1272
KK + V F P ++ +HVGH R+ I D I+R G++V+
Sbjct: 34 KKFYITVAF--PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 212 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 255
KK + V F P ++ +HVGH R+ I D I+R G++V+
Sbjct: 34 KKFYITVAF--PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 645
KK + V F P ++ +HVGH R+ I D I+R G++V+
Sbjct: 34 KKFYITVAF--PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 1229 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 1272
KK + V F P ++ +HVGH R+ I D I+R G++V+
Sbjct: 34 KKFYITVAF--PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 222 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 270
P + H+G+ R+ I GD + + L +LG+ V ++ D G G L
Sbjct: 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL 97
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 612 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 660
P + H+G+ R+ I GD + + L +LG+ V ++ D G G L
Sbjct: 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL 97
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1239 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 1287
P + H+G+ R+ I GD + + L +LG+ V ++ D G G L
Sbjct: 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL 97
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 18 LSTKGFISESATEDVLAAQLQNTKLK 43
++ KG+I + A E ++AAQ++N+KLK
Sbjct: 226 MNPKGYIDDEAAEQIIAAQIENSKLK 251
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 734 IYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDG 793
+ R +L+ G+ + K E LVP L ++D K++ E+ I + +++ +G
Sbjct: 127 FHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLL-DEETAGIIIEVIQGEG 185
Query: 794 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 827
G + D + Q I +EK D ++ + ++ G+
Sbjct: 186 GVNEASEDFLSKLQEICKEK-DVLLIIDEVQTGI 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,041,393
Number of Sequences: 62578
Number of extensions: 1779299
Number of successful extensions: 4822
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4764
Number of HSP's gapped (non-prelim): 55
length of query: 1458
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1347
effective length of database: 8,027,179
effective search space: 10812610113
effective search space used: 10812610113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)