Query psy15414
Match_columns 1458
No_of_seqs 797 out of 3875
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:24:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4426|consensus 100.0 3E-111 7E-116 940.7 52.9 588 472-1072 68-656 (656)
2 COG0018 ArgS Arginyl-tRNA synt 100.0 5E-110 1E-114 1022.1 55.5 564 476-1072 2-577 (577)
3 PLN02286 arginine-tRNA ligase 100.0 3E-109 6E-114 1031.4 61.3 569 482-1072 4-576 (576)
4 PRK12451 arginyl-tRNA syntheta 100.0 8E-103 2E-107 973.5 59.7 555 477-1072 3-562 (562)
5 KOG4426|consensus 100.0 5E-100 1E-104 850.6 39.8 452 4-493 14-470 (656)
6 TIGR00456 argS arginyl-tRNA sy 100.0 1.1E-96 2E-101 922.5 58.1 555 479-1072 3-566 (566)
7 PRK01611 argS arginyl-tRNA syn 100.0 3.7E-87 8E-92 828.2 54.5 497 476-1072 4-507 (507)
8 KOG1195|consensus 100.0 9.1E-83 2E-87 731.8 37.6 513 536-1072 48-567 (567)
9 COG0018 ArgS Arginyl-tRNA synt 100.0 1.4E-78 3.1E-83 744.7 40.4 380 85-485 1-402 (577)
10 PLN02286 arginine-tRNA ligase 100.0 7.5E-76 1.6E-80 731.8 41.7 387 91-492 3-404 (576)
11 PRK12451 arginyl-tRNA syntheta 100.0 5.7E-73 1.2E-77 705.9 41.4 384 86-492 2-397 (562)
12 TIGR00456 argS arginyl-tRNA sy 100.0 5.1E-67 1.1E-71 655.2 39.3 380 89-492 3-398 (566)
13 PF00750 tRNA-synt_1d: tRNA sy 100.0 8.9E-67 1.9E-71 618.3 21.9 342 587-933 2-354 (354)
14 PF00750 tRNA-synt_1d: tRNA sy 100.0 2.4E-59 5.2E-64 554.8 20.7 289 197-490 2-312 (354)
15 PRK01611 argS arginyl-tRNA syn 100.0 1.4E-55 3.1E-60 546.5 35.0 323 85-487 3-343 (507)
16 KOG1195|consensus 100.0 9.1E-56 2E-60 509.1 29.9 358 112-492 27-393 (567)
17 cd00671 ArgRS_core catalytic c 100.0 2E-45 4.3E-50 407.5 23.7 210 605-870 1-212 (212)
18 cd00671 ArgRS_core catalytic c 100.0 6.1E-42 1.3E-46 379.6 21.8 201 215-472 1-212 (212)
19 PTZ00399 cysteinyl-tRNA-synthe 100.0 5.1E-37 1.1E-41 385.7 30.0 372 590-1073 46-470 (651)
20 PLN02946 cysteine-tRNA ligase 100.0 2.7E-34 5.9E-39 350.8 32.6 367 590-1067 66-474 (557)
21 COG0215 CysS Cysteinyl-tRNA sy 100.0 1.4E-34 3.1E-39 340.6 25.5 327 589-1028 7-378 (464)
22 PRK00260 cysS cysteinyl-tRNA s 100.0 1.2E-30 2.7E-35 319.9 31.0 344 594-1066 13-398 (463)
23 PRK14536 cysS cysteinyl-tRNA s 100.0 1.3E-30 2.8E-35 316.0 26.4 347 592-1023 11-404 (490)
24 PRK14534 cysS cysteinyl-tRNA s 100.0 2.4E-30 5.2E-35 312.0 27.4 327 604-1024 20-398 (481)
25 PRK14535 cysS cysteinyl-tRNA s 100.0 1.8E-30 3.8E-35 317.7 26.4 317 595-1024 239-613 (699)
26 COG0143 MetG Methionyl-tRNA sy 100.0 1.7E-29 3.6E-34 309.0 35.0 383 603-1099 4-515 (558)
27 TIGR00435 cysS cysteinyl-tRNA 100.0 3.2E-29 6.9E-34 306.7 28.8 323 593-1022 10-375 (465)
28 PRK12418 cysteinyl-tRNA synthe 100.0 1.1E-28 2.4E-33 291.6 31.7 309 602-1028 6-365 (384)
29 PF01406 tRNA-synt_1e: tRNA sy 100.0 5.1E-30 1.1E-34 289.6 17.4 251 602-939 5-298 (300)
30 TIGR03447 mycothiol_MshC cyste 100.0 1.6E-28 3.4E-33 291.3 28.9 304 603-1023 34-387 (411)
31 PRK11893 methionyl-tRNA synthe 100.0 6E-28 1.3E-32 302.3 32.0 377 604-1098 1-478 (511)
32 TIGR00398 metG methionyl-tRNA 100.0 1.6E-27 3.5E-32 299.2 34.4 374 607-1097 2-504 (530)
33 KOG2007|consensus 100.0 3.3E-28 7.2E-33 281.0 25.0 368 588-1068 39-454 (586)
34 PRK00133 metG methionyl-tRNA s 100.0 2.2E-26 4.7E-31 294.9 34.6 373 604-1096 2-503 (673)
35 PLN02224 methionine-tRNA ligas 99.9 3.2E-26 6.9E-31 286.5 30.9 385 601-1098 66-548 (616)
36 PRK12267 methionyl-tRNA synthe 99.9 7.6E-26 1.6E-30 289.6 32.7 379 604-1097 4-479 (648)
37 PLN02610 probable methionyl-tR 99.9 8.1E-25 1.8E-29 281.3 32.4 383 603-1097 16-533 (801)
38 PRK12268 methionyl-tRNA synthe 99.9 1.5E-24 3.2E-29 274.0 32.7 331 604-1029 3-463 (556)
39 KOG0436|consensus 99.9 7.7E-23 1.7E-27 231.4 27.7 376 614-1104 49-535 (578)
40 cd07956 Anticodon_Ia_Arg Antic 99.9 1.7E-23 3.7E-28 221.5 12.3 155 910-1072 2-156 (156)
41 cd00672 CysRS_core catalytic c 99.8 1.1E-20 2.3E-25 209.1 15.5 192 602-932 17-213 (213)
42 cd00668 Ile_Leu_Val_MetRS_core 99.8 3E-20 6.6E-25 218.5 19.4 255 606-931 2-312 (312)
43 cd00812 LeuRS_core catalytic c 99.8 6.1E-20 1.3E-24 215.7 16.1 241 605-933 1-314 (314)
44 cd00814 MetRS_core catalytic c 99.8 1.6E-19 3.4E-24 213.0 19.2 241 605-931 1-319 (319)
45 PRK13208 valS valyl-tRNA synth 99.8 7.8E-18 1.7E-22 220.6 35.0 129 603-770 37-170 (800)
46 TIGR00422 valS valyl-tRNA synt 99.8 1E-16 2.3E-21 211.6 34.7 184 851-1095 512-699 (861)
47 cd00802 class_I_aaRS_core cata 99.8 9.7E-19 2.1E-23 182.6 11.9 143 608-869 1-143 (143)
48 PRK14900 valS valyl-tRNA synth 99.8 2.1E-16 4.5E-21 210.3 35.8 187 851-1096 525-715 (1052)
49 cd00818 IleRS_core catalytic c 99.8 6E-18 1.3E-22 200.7 18.1 258 605-931 2-338 (338)
50 PRK05729 valS valyl-tRNA synth 99.8 1.9E-16 4.2E-21 209.0 33.9 183 850-1096 506-693 (874)
51 cd00674 LysRS_core_class_I cat 99.7 4E-17 8.7E-22 192.0 19.7 261 604-935 19-318 (353)
52 PF05746 DALR_1: DALR anticodo 99.7 5.5E-18 1.2E-22 171.1 10.5 119 947-1072 1-119 (119)
53 PF09334 tRNA-synt_1g: tRNA sy 99.7 2.5E-17 5.3E-22 198.4 17.8 262 607-954 2-390 (391)
54 cd00817 ValRS_core catalytic c 99.7 6E-17 1.3E-21 195.2 20.2 132 605-772 2-138 (382)
55 TIGR00392 ileS isoleucyl-tRNA 99.7 1.5E-15 3.2E-20 201.0 30.4 218 818-1096 567-791 (861)
56 TIGR00464 gltX_bact glutamyl-t 99.7 7.8E-17 1.7E-21 197.6 15.3 139 785-941 173-313 (470)
57 PRK01406 gltX glutamyl-tRNA sy 99.7 1.2E-15 2.6E-20 187.3 18.8 137 785-941 183-322 (476)
58 PLN02943 aminoacyl-tRNA ligase 99.7 2E-14 4.2E-19 190.4 31.2 190 851-1095 570-770 (958)
59 PRK06039 ileS isoleucyl-tRNA s 99.7 8.4E-14 1.8E-18 185.4 36.7 183 850-1074 578-765 (975)
60 smart00836 DALR_1 DALR anticod 99.7 4.6E-16 1E-20 157.9 11.1 122 947-1072 1-122 (122)
61 PF03485 Arg_tRNA_synt_N: Argi 99.6 3.5E-16 7.6E-21 148.6 7.4 84 1107-1205 2-85 (85)
62 PTZ00419 valyl-tRNA synthetase 99.6 2E-13 4.4E-18 182.5 36.1 215 853-1095 574-804 (995)
63 PLN02882 aminoacyl-tRNA ligase 99.6 3.7E-13 8E-18 180.3 37.2 131 603-768 37-172 (1159)
64 COG0525 ValS Valyl-tRNA synthe 99.6 7.5E-13 1.6E-17 167.5 37.2 175 852-1074 513-692 (877)
65 PRK05743 ileS isoleucyl-tRNA s 99.6 1.5E-13 3.2E-18 181.8 31.4 171 818-1029 548-722 (912)
66 PRK14895 gltX glutamyl-tRNA sy 99.6 1.1E-14 2.4E-19 177.3 15.6 134 785-941 172-311 (513)
67 TIGR00395 leuS_arch leucyl-tRN 99.6 2.3E-12 5E-17 171.0 36.1 138 603-768 24-166 (938)
68 PRK00750 lysK lysyl-tRNA synth 99.6 1.6E-13 3.5E-18 170.4 22.2 259 606-933 25-321 (510)
69 PLN02381 valyl-tRNA synthetase 99.5 3.4E-11 7.3E-16 160.8 40.2 132 603-769 127-263 (1066)
70 cd00802 class_I_aaRS_core cata 99.5 8E-14 1.7E-18 145.6 11.7 55 218-272 1-55 (143)
71 TIGR00467 lysS_arch lysyl-tRNA 99.5 8.1E-13 1.8E-17 163.0 21.0 260 605-936 19-317 (515)
72 PRK12558 glutamyl-tRNA synthet 99.5 2.4E-13 5.3E-18 164.1 15.5 192 727-941 53-311 (445)
73 PTZ00427 isoleucine-tRNA ligas 99.5 5.1E-11 1.1E-15 159.5 35.0 155 579-768 73-236 (1205)
74 PRK00390 leuS leucyl-tRNA synt 99.4 7.3E-11 1.6E-15 154.6 33.4 126 847-1025 561-687 (805)
75 TIGR00396 leuS_bact leucyl-tRN 99.4 6.7E-11 1.5E-15 155.3 32.6 119 864-1023 604-724 (842)
76 PF03485 Arg_tRNA_synt_N: Argi 99.4 4.6E-13 9.9E-18 127.3 8.6 83 480-578 2-85 (85)
77 TIGR00464 gltX_bact glutamyl-t 99.3 4.6E-12 1E-16 155.9 11.8 101 1349-1456 51-213 (470)
78 KOG1247|consensus 99.3 6.9E-12 1.5E-16 143.2 11.9 333 602-1029 12-473 (567)
79 PRK12410 glutamylglutaminyl-tR 99.3 9.7E-12 2.1E-16 149.7 13.3 138 785-941 166-305 (433)
80 PLN02627 glutamyl-tRNA synthet 99.3 9.1E-12 2E-16 152.2 13.0 139 785-941 225-365 (535)
81 PRK01406 gltX glutamyl-tRNA sy 99.3 6.4E-12 1.4E-16 154.7 9.2 97 1349-1456 54-223 (476)
82 cd00808 GluRS_core catalytic c 99.3 7.1E-11 1.5E-15 132.5 15.4 210 612-940 7-233 (239)
83 PRK14895 gltX glutamyl-tRNA sy 99.3 2.3E-11 5E-16 148.6 12.3 98 1349-1456 54-212 (513)
84 cd09287 GluRS_non_core catalyt 99.2 7.1E-11 1.5E-15 132.0 14.7 167 610-870 5-172 (240)
85 PRK13804 ileS isoleucyl-tRNA s 99.2 9.7E-11 2.1E-15 155.7 16.7 172 817-1029 585-760 (961)
86 PRK04156 gltX glutamyl-tRNA sy 99.2 5.8E-11 1.3E-15 146.9 13.2 231 603-939 99-401 (567)
87 KOG0432|consensus 99.2 2.7E-08 5.8E-13 123.8 34.8 195 854-1066 583-793 (995)
88 cd00418 GlxRS_core catalytic c 99.2 7.1E-11 1.5E-15 131.5 10.5 168 729-941 54-225 (230)
89 PLN02843 isoleucyl-tRNA synthe 99.2 4E-10 8.6E-15 149.9 17.6 180 817-1029 566-749 (974)
90 PRK12300 leuS leucyl-tRNA synt 99.1 6.2E-10 1.3E-14 147.5 17.8 196 818-1095 533-731 (897)
91 PF00749 tRNA-synt_1c: tRNA sy 99.1 1E-09 2.2E-14 129.0 16.7 135 785-936 175-312 (314)
92 PRK12558 glutamyl-tRNA synthet 99.1 2.6E-10 5.6E-15 138.2 9.1 98 1345-1452 48-208 (445)
93 TIGR03838 queuosine_YadB gluta 99.1 3.9E-10 8.5E-15 128.9 10.0 76 785-871 161-236 (272)
94 PRK00260 cysS cysteinyl-tRNA s 99.0 6.2E-09 1.3E-13 128.9 19.5 228 214-494 22-294 (463)
95 cd00808 GluRS_core catalytic c 99.0 5.9E-10 1.3E-14 125.2 8.4 75 1350-1457 52-135 (239)
96 COG0008 GlnS Glutamyl- and glu 99.0 2.1E-09 4.5E-14 131.1 13.5 137 787-940 184-322 (472)
97 TIGR00435 cysS cysteinyl-tRNA 99.0 1.2E-08 2.6E-13 126.2 20.2 227 215-494 21-293 (465)
98 cd00668 Ile_Leu_Val_MetRS_core 99.0 2E-08 4.3E-13 118.7 19.0 237 216-494 2-301 (312)
99 cd00814 MetRS_core catalytic c 98.9 2.2E-08 4.8E-13 118.6 18.0 114 216-381 2-118 (319)
100 cd00812 LeuRS_core catalytic c 98.9 1.8E-08 3.8E-13 119.1 16.1 118 215-384 1-123 (314)
101 PRK05710 glutamyl-Q tRNA(Asp) 98.9 1.3E-08 2.9E-13 117.7 14.6 77 785-872 168-244 (299)
102 PF00749 tRNA-synt_1c: tRNA sy 98.9 8.9E-09 1.9E-13 121.2 13.0 94 1349-1452 51-211 (314)
103 TIGR03838 queuosine_YadB gluta 98.9 7.4E-09 1.6E-13 118.5 10.6 94 1349-1452 50-197 (272)
104 PRK12410 glutamylglutaminyl-tR 98.8 7.8E-09 1.7E-13 124.9 8.6 94 1349-1452 49-202 (433)
105 COG1384 LysS Lysyl-tRNA synthe 98.8 7.2E-08 1.6E-12 115.7 16.4 263 604-939 19-324 (521)
106 PF01921 tRNA-synt_1f: tRNA sy 98.8 6.8E-09 1.5E-13 121.6 7.5 259 603-938 22-328 (360)
107 PRK05710 glutamyl-Q tRNA(Asp) 98.8 1.6E-08 3.5E-13 117.0 10.0 94 1349-1452 55-204 (299)
108 PLN02627 glutamyl-tRNA synthet 98.8 2.4E-08 5.2E-13 122.7 11.0 148 1228-1452 41-261 (535)
109 COG0060 IleS Isoleucyl-tRNA sy 98.8 1.1E-07 2.3E-12 123.0 17.3 212 817-1075 557-774 (933)
110 PLN03233 putative glutamate-tR 98.8 2.3E-08 5E-13 122.8 10.5 76 785-869 167-251 (523)
111 PTZ00402 glutamyl-tRNA synthet 98.8 3.3E-08 7.2E-13 122.5 11.7 116 793-940 229-352 (601)
112 COG0008 GlnS Glutamyl- and glu 98.7 1.3E-08 2.9E-13 124.2 7.4 96 1349-1451 59-217 (472)
113 cd00807 GlnRS_core catalytic c 98.7 3.1E-08 6.8E-13 110.6 9.2 116 729-870 54-170 (238)
114 cd09287 GluRS_non_core catalyt 98.7 1.8E-08 3.8E-13 113.0 6.9 129 1239-1452 7-135 (240)
115 PRK05347 glutaminyl-tRNA synth 98.7 6.8E-08 1.5E-12 119.0 10.6 75 785-871 190-277 (554)
116 cd00418 GlxRS_core catalytic c 98.7 2.6E-08 5.5E-13 111.3 6.3 70 1349-1452 51-121 (230)
117 PLN02907 glutamate-tRNA ligase 98.7 4E-08 8.6E-13 126.3 8.7 123 785-940 369-512 (722)
118 cd00674 LysRS_core_class_I cat 98.6 3.6E-07 7.9E-12 108.5 15.5 240 214-494 19-303 (353)
119 PRK11893 methionyl-tRNA synthe 98.6 1.8E-07 3.8E-12 118.2 13.1 121 1232-1401 2-122 (511)
120 TIGR00463 gltX_arch glutamyl-t 98.6 2.5E-07 5.4E-12 115.0 12.7 188 604-870 92-335 (560)
121 cd00818 IleRS_core catalytic c 98.6 1.3E-07 2.8E-12 112.9 9.7 129 1239-1400 9-140 (338)
122 PLN02224 methionine-tRNA ligas 98.6 3.3E-07 7.1E-12 116.4 12.9 134 1227-1409 65-204 (616)
123 KOG1149|consensus 98.5 1.4E-06 3.1E-11 101.5 15.6 133 785-940 213-352 (524)
124 cd00807 GlnRS_core catalytic c 98.5 1.2E-07 2.7E-12 105.9 6.5 83 1349-1452 51-133 (238)
125 PRK12267 methionyl-tRNA synthe 98.5 5.4E-07 1.2E-11 116.6 13.4 117 1232-1398 5-122 (648)
126 TIGR00398 metG methionyl-tRNA 98.5 4.9E-07 1.1E-11 114.6 12.2 114 1239-1401 7-120 (530)
127 PLN02563 aminoacyl-tRNA ligase 98.5 4.1E-07 8.9E-12 120.5 11.5 118 212-382 109-232 (963)
128 PLN03233 putative glutamate-tR 98.5 4.5E-07 9.7E-12 111.6 11.0 96 1231-1396 10-105 (523)
129 COG0495 LeuS Leucyl-tRNA synth 98.4 1.6E-06 3.4E-11 111.5 14.3 162 818-1027 529-697 (814)
130 cd00817 ValRS_core catalytic c 98.4 6.7E-07 1.4E-11 108.6 10.0 136 1233-1401 3-140 (382)
131 TIGR00440 glnS glutaminyl-tRNA 98.4 8.5E-07 1.8E-11 109.4 10.7 126 794-936 182-325 (522)
132 PRK04156 gltX glutamyl-tRNA sy 98.4 3.5E-07 7.6E-12 113.8 7.4 99 1230-1396 99-197 (567)
133 PRK14703 glutaminyl-tRNA synth 98.4 9.6E-07 2.1E-11 113.5 9.8 78 785-869 192-278 (771)
134 PLN02907 glutamate-tRNA ligase 98.4 9.4E-07 2E-11 113.9 9.5 96 1231-1396 212-307 (722)
135 PRK12268 methionyl-tRNA synthe 98.3 2E-06 4.4E-11 109.6 12.1 121 1232-1401 4-125 (556)
136 PLN02959 aminoacyl-tRNA ligase 98.3 6.2E-06 1.4E-10 111.5 16.9 61 214-274 45-105 (1084)
137 PLN02859 glutamine-tRNA ligase 98.3 1.7E-06 3.6E-11 110.1 10.2 63 801-872 445-507 (788)
138 PRK14534 cysS cysteinyl-tRNA s 98.3 1.1E-05 2.5E-10 99.1 16.9 233 215-493 21-307 (481)
139 PLN02563 aminoacyl-tRNA ligase 98.3 4.1E-06 8.8E-11 111.3 13.7 115 603-770 110-230 (963)
140 PF00133 tRNA-synt_1: tRNA syn 98.3 3.6E-06 7.7E-11 108.0 12.4 135 602-771 21-160 (601)
141 PRK05347 glutaminyl-tRNA synth 98.3 4.8E-06 1E-10 103.1 12.8 112 1208-1396 12-124 (554)
142 PRK14536 cysS cysteinyl-tRNA s 98.3 2.9E-05 6.3E-10 96.1 19.5 130 214-385 22-153 (490)
143 PRK13208 valS valyl-tRNA synth 98.3 2.2E-06 4.7E-11 113.6 10.1 136 1230-1401 37-174 (800)
144 COG0495 LeuS Leucyl-tRNA synth 98.2 3.1E-06 6.8E-11 108.8 9.9 119 604-774 34-157 (814)
145 cd00672 CysRS_core catalytic c 98.2 1.8E-05 3.9E-10 88.3 14.3 177 216-494 21-202 (213)
146 PLN02946 cysteine-tRNA ligase 98.2 4.2E-05 9.2E-10 95.6 18.9 221 214-493 79-350 (557)
147 PRK00133 metG methionyl-tRNA s 98.2 8.7E-06 1.9E-10 105.8 13.1 121 1232-1401 3-123 (673)
148 TIGR00463 gltX_arch glutamyl-t 98.1 4.7E-06 1E-10 103.9 7.0 96 1231-1396 92-187 (560)
149 PLN02843 isoleucyl-tRNA synthe 98.1 1.8E-05 4E-10 106.1 12.9 132 603-772 31-167 (974)
150 PRK00390 leuS leucyl-tRNA synt 98.1 1.5E-05 3.2E-10 105.3 11.8 113 1240-1401 41-155 (805)
151 PTZ00402 glutamyl-tRNA synthet 98.1 9.8E-06 2.1E-10 101.0 9.3 97 1230-1396 50-147 (601)
152 TIGR00396 leuS_bact leucyl-tRN 98.1 1.6E-05 3.5E-10 105.3 11.8 119 1233-1401 32-152 (842)
153 PLN02381 valyl-tRNA synthetase 98.0 1.2E-05 2.6E-10 108.4 10.7 134 1230-1398 127-265 (1066)
154 TIGR00422 valS valyl-tRNA synt 98.0 1.1E-05 2.3E-10 107.9 10.2 135 1230-1398 32-169 (861)
155 PRK13804 ileS isoleucyl-tRNA s 98.0 2.2E-05 4.8E-10 105.3 13.0 134 603-772 53-191 (961)
156 PF09334 tRNA-synt_1g: tRNA sy 98.0 2.6E-05 5.5E-10 95.0 12.0 111 1240-1399 8-118 (391)
157 PRK12418 cysteinyl-tRNA synthe 98.0 6.5E-05 1.4E-09 90.5 14.9 120 1229-1399 6-126 (384)
158 PTZ00419 valyl-tRNA synthetase 98.0 1.4E-05 3.1E-10 108.1 10.1 136 1229-1399 58-198 (995)
159 PRK14703 glutaminyl-tRNA synth 98.0 1.2E-05 2.6E-10 103.6 8.5 114 1206-1396 12-126 (771)
160 TIGR00467 lysS_arch lysyl-tRNA 98.0 2.4E-05 5.3E-10 97.5 10.5 48 215-263 19-66 (515)
161 PLN02943 aminoacyl-tRNA ligase 97.9 2.3E-05 5E-10 105.1 10.3 135 1230-1400 87-226 (958)
162 PF00133 tRNA-synt_1: tRNA syn 97.9 6.4E-05 1.4E-09 96.6 13.9 136 1228-1396 20-158 (601)
163 PTZ00437 glutaminyl-tRNA synth 97.9 2.5E-05 5.5E-10 96.6 9.7 34 603-637 49-82 (574)
164 PRK14900 valS valyl-tRNA synth 97.9 2.3E-05 5.1E-10 105.9 9.8 134 1231-1398 48-185 (1052)
165 PTZ00427 isoleucine-tRNA ligas 97.9 2.4E-05 5.1E-10 106.1 9.4 127 1238-1397 109-238 (1205)
166 PTZ00437 glutaminyl-tRNA synth 97.9 1.6E-05 3.5E-10 98.3 7.1 96 1231-1396 50-145 (574)
167 PLN02610 probable methionyl-tR 97.9 5.9E-05 1.3E-09 99.0 12.6 119 1231-1398 17-136 (801)
168 TIGR00395 leuS_arch leucyl-tRN 97.9 4.2E-05 9E-10 102.7 11.4 143 1230-1397 24-168 (938)
169 COG0143 MetG Methionyl-tRNA sy 97.9 0.0001 2.2E-09 92.4 13.5 119 1231-1398 5-123 (558)
170 PRK00750 lysK lysyl-tRNA synth 97.9 0.00029 6.4E-09 88.5 17.6 237 215-491 24-305 (510)
171 PRK05743 ileS isoleucyl-tRNA s 97.9 4E-05 8.6E-10 102.6 10.3 131 1230-1397 48-181 (912)
172 PLN02882 aminoacyl-tRNA ligase 97.8 3.4E-05 7.3E-10 104.9 8.9 132 1233-1397 40-174 (1159)
173 PLN02959 aminoacyl-tRNA ligase 97.8 9.2E-05 2E-09 100.4 12.6 61 604-664 45-105 (1084)
174 TIGR03447 mycothiol_MshC cyste 97.8 0.00017 3.7E-09 87.3 13.3 119 1230-1399 34-153 (411)
175 PRK05729 valS valyl-tRNA synth 97.8 4.7E-05 1E-09 101.9 9.2 134 1230-1399 35-173 (874)
176 TIGR00440 glnS glutaminyl-tRNA 97.7 5.1E-05 1.1E-09 94.0 7.8 45 1349-1396 50-95 (522)
177 TIGR00392 ileS isoleucyl-tRNA 97.7 0.00014 3E-09 97.5 12.6 134 1231-1397 36-172 (861)
178 PRK06039 ileS isoleucyl-tRNA s 97.7 9E-05 1.9E-09 100.1 9.9 135 1230-1397 40-177 (975)
179 KOG0433|consensus 97.7 0.00088 1.9E-08 83.2 17.1 147 850-1027 599-746 (937)
180 COG0525 ValS Valyl-tRNA synthe 97.7 0.00024 5.3E-09 91.7 12.4 130 1231-1396 33-167 (877)
181 PRK14535 cysS cysteinyl-tRNA s 97.6 0.00057 1.2E-08 86.3 15.1 123 1230-1402 246-369 (699)
182 PLN02859 glutamine-tRNA ligase 97.6 0.00012 2.6E-09 93.7 8.7 95 1232-1396 264-358 (788)
183 KOG0435|consensus 97.6 9.1E-05 2E-09 90.7 6.3 107 613-772 66-178 (876)
184 PTZ00399 cysteinyl-tRNA-synthe 97.5 0.00067 1.5E-08 87.4 13.0 125 1228-1401 56-181 (651)
185 PF01406 tRNA-synt_1e: tRNA sy 97.5 0.0046 1E-07 71.7 18.0 228 213-494 6-280 (300)
186 PRK12300 leuS leucyl-tRNA synt 97.4 0.00028 6E-09 94.6 9.0 124 619-770 1-129 (897)
187 COG0215 CysS Cysteinyl-tRNA sy 97.4 0.0043 9.2E-08 75.5 17.2 119 215-385 22-143 (464)
188 KOG1149|consensus 97.2 0.00057 1.2E-08 80.5 6.1 42 1352-1396 86-136 (524)
189 KOG0432|consensus 96.6 0.0062 1.3E-07 77.5 9.4 162 1237-1434 81-263 (995)
190 COG0060 IleS Isoleucyl-tRNA sy 96.6 0.0074 1.6E-07 79.3 10.4 130 605-770 50-184 (933)
191 TIGR00233 trpS tryptophanyl-tR 96.4 0.012 2.6E-07 70.2 9.6 60 813-877 139-206 (328)
192 cd07957 Anticodon_Ia_Met Antic 96.2 0.048 1E-06 55.4 11.7 116 948-1092 10-127 (129)
193 PRK13354 tyrosyl-tRNA syntheta 95.9 0.022 4.8E-07 69.9 9.1 55 818-877 189-243 (410)
194 KOG0434|consensus 95.8 0.088 1.9E-06 65.5 13.2 138 847-1025 586-733 (1070)
195 KOG0433|consensus 95.0 0.14 3.1E-06 64.5 11.5 121 615-773 66-191 (937)
196 cd07962 Anticodon_Ia_Val Antic 94.7 0.14 3.1E-06 52.9 9.2 90 982-1093 42-134 (135)
197 cd07958 Anticodon_Ia_Leu_BEm A 94.6 0.29 6.3E-06 48.7 10.7 104 950-1092 12-115 (117)
198 KOG0435|consensus 94.4 0.016 3.4E-07 71.9 1.2 34 1240-1273 66-99 (876)
199 cd07375 Anticodon_Ia_like Anti 93.9 0.73 1.6E-05 45.5 11.9 76 947-1028 10-85 (117)
200 cd07959 Anticodon_Ia_Leu_AEc A 93.9 0.58 1.3E-05 46.7 11.2 68 952-1028 14-82 (117)
201 KOG2007|consensus 93.4 0.52 1.1E-05 57.5 11.3 126 215-388 55-184 (586)
202 KOG1147|consensus 93.4 0.095 2.1E-06 63.8 5.1 48 1350-1400 251-298 (712)
203 TIGR00234 tyrS tyrosyl-tRNA sy 93.1 0.33 7.2E-06 59.2 9.3 55 818-877 180-234 (377)
204 COG0162 TyrS Tyrosyl-tRNA synt 92.7 0.3 6.5E-06 59.5 8.1 53 818-875 183-235 (401)
205 PRK01233 glyS glycyl-tRNA synt 91.7 0.91 2E-05 59.1 11.1 106 945-1060 569-674 (682)
206 COG0180 TrpS Tryptophanyl-tRNA 91.3 0.1 2.2E-06 61.3 1.8 55 820-877 150-212 (314)
207 TIGR00211 glyS glycyl-tRNA syn 90.9 1.2 2.5E-05 58.3 10.9 107 944-1060 578-684 (691)
208 KOG0434|consensus 90.3 0.97 2.1E-05 56.8 8.9 130 605-769 39-173 (1070)
209 cd00805 TyrRS_core catalytic c 90.2 0.15 3.4E-06 59.2 2.1 58 817-880 153-210 (269)
210 PRK12556 tryptophanyl-tRNA syn 89.7 0.23 5E-06 59.5 3.0 60 813-876 149-214 (332)
211 KOG0437|consensus 89.6 3 6.6E-05 53.1 12.4 46 213-258 43-88 (1080)
212 PRK12285 tryptophanyl-tRNA syn 88.6 0.26 5.6E-06 59.8 2.5 58 815-877 203-265 (368)
213 COG1384 LysS Lysyl-tRNA synthe 88.5 1.6 3.5E-05 54.1 9.0 65 1209-1281 4-69 (521)
214 PF00579 tRNA-synt_1b: tRNA sy 88.5 0.21 4.4E-06 58.9 1.5 62 818-881 152-216 (292)
215 cd00395 Tyr_Trp_RS_core cataly 87.8 0.38 8.1E-06 56.2 3.1 59 817-880 155-214 (273)
216 PRK14908 glycyl-tRNA synthetas 87.6 2.8 6E-05 56.4 11.0 104 942-1060 891-994 (1000)
217 cd07960 Anticodon_Ia_Ile_BEm A 87.6 6.2 0.00013 42.9 12.2 95 981-1095 43-140 (180)
218 PRK05912 tyrosyl-tRNA syntheta 86.9 0.39 8.4E-06 59.2 2.6 57 816-877 189-245 (408)
219 PRK08560 tyrosyl-tRNA syntheta 86.7 0.5 1.1E-05 56.6 3.3 59 813-878 168-229 (329)
220 PRK12284 tryptophanyl-tRNA syn 86.2 0.49 1.1E-05 57.9 2.9 61 813-877 148-215 (431)
221 COG0751 GlyS Glycyl-tRNA synth 85.7 15 0.00033 47.6 15.5 159 874-1059 521-682 (691)
222 PF01921 tRNA-synt_1f: tRNA sy 85.6 1.2 2.7E-05 53.4 5.8 69 1209-1280 3-71 (360)
223 cd00806 TrpRS_core catalytic c 85.6 0.57 1.2E-05 54.9 3.0 55 820-877 142-205 (280)
224 KOG0436|consensus 84.2 6.3 0.00014 47.5 10.5 104 225-380 50-156 (578)
225 PLN02486 aminoacyl-tRNA ligase 81.6 0.84 1.8E-05 55.7 2.2 55 818-877 222-279 (383)
226 PF08264 Anticodon_1: Anticodo 80.7 14 0.00031 38.6 11.0 45 985-1029 2-48 (153)
227 PRK12282 tryptophanyl-tRNA syn 79.4 1.2 2.7E-05 53.4 2.7 61 813-877 142-209 (333)
228 KOG1147|consensus 78.0 5.8 0.00013 49.1 7.5 41 731-771 255-296 (712)
229 PRK00927 tryptophanyl-tRNA syn 76.3 1.5 3.2E-05 52.7 2.1 63 813-877 138-209 (333)
230 PTZ00126 tyrosyl-tRNA syntheta 75.7 2.3 5.1E-05 51.9 3.6 59 813-877 210-271 (383)
231 PRK12283 tryptophanyl-tRNA syn 71.8 2.3 4.9E-05 51.9 2.2 38 610-654 6-44 (398)
232 KOG1148|consensus 57.1 11 0.00024 47.3 4.1 62 602-664 245-334 (764)
233 PTZ00348 tyrosyl-tRNA syntheta 49.9 11 0.00023 49.4 2.7 59 813-877 175-236 (682)
234 cd00805 TyrRS_core catalytic c 46.6 17 0.00038 42.4 3.5 40 610-655 4-44 (269)
235 cd07961 Anticodon_Ia_Ile_ABEc 43.1 1.5E+02 0.0033 32.1 10.0 48 981-1028 46-94 (183)
236 PTZ00126 tyrosyl-tRNA syntheta 43.0 24 0.00052 43.4 4.0 42 609-655 69-110 (383)
237 PLN02886 aminoacyl-tRNA ligase 42.5 21 0.00045 43.8 3.4 40 608-653 48-87 (389)
238 PRK08560 tyrosyl-tRNA syntheta 39.8 23 0.0005 42.6 3.2 39 610-654 34-72 (329)
239 KOG1148|consensus 38.9 32 0.0007 43.4 4.2 75 1208-1291 232-334 (764)
240 cd00806 TrpRS_core catalytic c 38.4 29 0.00062 40.9 3.6 39 610-653 3-41 (280)
241 PLN02886 aminoacyl-tRNA ligase 35.3 25 0.00054 43.2 2.5 38 1237-1280 50-87 (389)
242 PF09190 DALR_2: DALR domain; 35.0 93 0.002 27.9 5.5 50 1000-1066 4-54 (63)
243 PRK00927 tryptophanyl-tRNA syn 34.8 27 0.00059 42.1 2.7 41 1238-1284 6-46 (333)
244 TIGR00234 tyrS tyrosyl-tRNA sy 33.7 33 0.00072 42.1 3.3 43 220-268 34-77 (377)
245 cd00395 Tyr_Trp_RS_core cataly 32.1 45 0.00098 39.1 3.9 38 610-653 3-41 (273)
246 PF15294 Leu_zip: Leucine zipp 31.7 76 0.0017 37.1 5.5 50 2-51 82-153 (278)
247 PF00975 Thioesterase: Thioest 31.6 45 0.00098 37.1 3.7 31 1248-1278 71-101 (229)
248 PF00579 tRNA-synt_1b: tRNA sy 30.7 40 0.00086 39.8 3.2 39 609-653 8-46 (292)
249 PTZ00348 tyrosyl-tRNA syntheta 30.3 48 0.001 43.7 4.0 41 609-654 35-75 (682)
250 PRK05912 tyrosyl-tRNA syntheta 29.7 56 0.0012 40.6 4.3 44 608-657 35-79 (408)
251 PRK12285 tryptophanyl-tRNA syn 28.4 60 0.0013 39.8 4.2 38 610-653 70-107 (368)
252 KOG0437|consensus 26.8 82 0.0018 41.1 4.9 62 603-664 43-104 (1080)
253 PF12808 Mto2_bdg: Micro-tubul 25.4 1.3E+02 0.0028 26.4 4.4 25 27-51 26-50 (52)
254 TIGR00233 trpS tryptophanyl-tR 25.3 47 0.001 40.0 2.5 42 220-267 6-47 (328)
255 PF08232 Striatin: Striatin fa 24.3 5.2E+02 0.011 27.1 9.6 46 5-60 24-69 (134)
256 PRK12282 tryptophanyl-tRNA syn 24.2 69 0.0015 38.7 3.7 40 609-654 5-44 (333)
257 PRK13354 tyrosyl-tRNA syntheta 22.9 62 0.0013 40.3 3.0 55 420-479 183-243 (410)
258 PRK10884 SH3 domain-containing 22.9 1.2E+02 0.0026 34.2 4.9 54 4-57 98-159 (206)
259 PF03464 eRF1_2: eRF1 domain 2 22.6 1.1E+02 0.0023 31.8 4.3 28 1165-1201 56-85 (133)
260 PLN02486 aminoacyl-tRNA ligase 22.4 92 0.002 38.4 4.3 38 610-653 77-116 (383)
261 PRK12284 tryptophanyl-tRNA syn 21.8 78 0.0017 39.4 3.4 41 609-653 5-45 (431)
262 PF06156 DUF972: Protein of un 20.5 2.8E+02 0.006 28.0 6.4 43 5-57 14-56 (107)
No 1
>KOG4426|consensus
Probab=100.00 E-value=3.1e-111 Score=940.74 Aligned_cols=588 Identities=60% Similarity=0.996 Sum_probs=556.7
Q ss_pred ccccCHHHHHHHHHhhhhhhcccccCCcceeEeecCcccccccccchhchHHHHHHHHhhcCCCCChhhHHHHHHHhhcc
Q psy15414 472 RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTS 551 (1458)
Q Consensus 472 gt~~~l~~~L~ell~dAi~~a~~~~~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~~~P~~IA~~i~~~i~~ 551 (1458)
..+.++...|.++++.|+..+++...+.|+.+.+++++ +||||+||.||.|++.++.+|++++|.+||++|..+
T Consensus 68 ~~~~ni~~~L~~lF~~aik~a~Pd~~~vp~liaps~~~---kFGDYQCNnAMgl~~~lK~kg~~~~P~~va~~l~~~--- 141 (656)
T KOG4426|consen 68 KFTSNIFRRLQSLFDVAIKLAFPDLPDVPLLIAPSPNA---KFGDYQCNNAMGLSSKLKGKGINKRPRDVAQELQKH--- 141 (656)
T ss_pred cccccHHHHHHHHHHHHHHHhCCCCCCCCceeccCccc---ccccccccchhhHHHHHhhcCCccCcHHHHHHHHhh---
Confidence 33457889999999999999999887788888888899 999999999999999999999999999999999999
Q ss_pred cccCCcccccceeEEEEeCCceEEEEeCHHHHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHH
Q psy15414 552 ELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 631 (1458)
Q Consensus 552 ~l~~~~~~~~~i~~vevagpGfiN~~l~~~~~~~~l~~i~~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD 631 (1458)
+|.+ +.|++++|+||||||++|+..|+.+.|..++.+|...|.+ ..++|+|+|||||++|.|||||+|||||||
T Consensus 142 -lP~s----e~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~~P~l-~~KrvlVDFSSPNIAKeMHVGHLRSTIIGd 215 (656)
T KOG4426|consen 142 -LPTS----EMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVKLPTL-SVKRVLVDFSSPNIAKEMHVGHLRSTIIGD 215 (656)
T ss_pred -CCch----hhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCCCccc-ceeeEEEecCCCcHHHHhhhhhhhhhhHhH
Confidence 9876 7999999999999999999999999999999999998776 458999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhc
Q psy15414 632 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 711 (1458)
Q Consensus 632 ~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~ 711 (1458)
+|+|+|++.|++|.|.||+||||+||||+++++.++||++....+||.||+-+|++++.+|+++++|+++|++.+.++|.
T Consensus 216 sl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQg 295 (656)
T KOG4426|consen 216 SLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQG 295 (656)
T ss_pred HHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHHHHHHhccCcCHHHHHHHHHHeeeccc
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecccccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCCCCCCcEEEcC
Q psy15414 712 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKS 791 (1458)
Q Consensus 712 gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~d~~~~vL~ks 791 (1458)
|||..++.|..+|++|..+|.++|++|+|++.++|||||++.|.++++.|..+|++.++||+.++|.++++ .|.+++||
T Consensus 296 gdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~~-IPLtvVKS 374 (656)
T KOG4426|consen 296 GDPDIRKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGCD-IPLTVVKS 374 (656)
T ss_pred CCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCCC-cceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 89999999
Q ss_pred CCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCC
Q psy15414 792 DGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD 871 (1458)
Q Consensus 792 DGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gn 871 (1458)
||..||.|+|+|+.+||+.....|++|||++.+|..||..+|++++..||.+|...++.|++||+|++.+|+|+.||.|.
T Consensus 375 DGGftYdtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld~~~~RV~HvgFGlVLGeD~KkFkTRsge 454 (656)
T KOG4426|consen 375 DGGFTYDTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLDPTYPRVEHVGFGLVLGEDKKKFKTRSGE 454 (656)
T ss_pred CCCcccccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccCCCccceeeeeeeeEEccCcccccccccc
Confidence 99999999999999999988899999999999999999999999999999888888999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHH
Q psy15414 872 TVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAY 951 (1458)
Q Consensus 872 vI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~ 951 (1458)
+|.+-|||+|+..|+.+.+.++|++..++|||+.+.++++++++|+|.+|+++|.+||.||+|+|++-.|||+.|+.|||
T Consensus 455 tVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~ 534 (656)
T KOG4426|consen 455 TVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAY 534 (656)
T ss_pred eeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchhhh-hccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhccc
Q psy15414 952 TRIASIARTAGINSEDLRV-AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1030 (1458)
Q Consensus 952 aRi~SIlrK~~~~~~~i~~-~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~v 1030 (1458)
+|||||.||.+.....++. ....+...|.|+.||+|.+.+.+|++.+..+.+++-||.+|+|+|+||..|..||++|-+
T Consensus 535 tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cyv 614 (656)
T KOG4426|consen 535 TRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSCYV 614 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccEE
Confidence 9999999999765322222 112234568899999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1031 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1031 L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
..++.+++.+.+...||+||+|+..|++.|+.+|||.|+.+|
T Consensus 615 ~e~~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi~pV~km 656 (656)
T KOG4426|consen 615 IEKNKEGEIPFVNMSRLLLCEATAAVMRKCFHILGIKPVYKM 656 (656)
T ss_pred eccccccccccchhHHHHHHHHHHHHHHHhhHhhCCcccccC
Confidence 877766777888999999999999999999999999998776
No 2
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-110 Score=1022.11 Aligned_cols=564 Identities=34% Similarity=0.540 Sum_probs=497.3
Q ss_pred CHHHHHHHHHhhhhhhcccccCCcceeEeecCcccccccccchhchHHHHHHHHhhcCCCCChhhHHHHHHHhhcccccC
Q psy15414 476 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 555 (1458)
Q Consensus 476 ~l~~~L~ell~dAi~~a~~~~~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~~~P~~IA~~i~~~i~~~l~~ 555 (1458)
++.+.+++.+.+++..+........+.++.|+++ +||||++|+||.|||.++ +||++||++|++. |+.
T Consensus 2 ~i~~~l~~~i~~~l~~~~~~~~~~~~~ve~~~~~---~~GD~a~n~a~~laK~~~-----~~P~eiA~~i~~~----l~~ 69 (577)
T COG0018 2 NIKQLLKEKIAEALSAAGLDVEEIEILVEPPKDP---EHGDFATNIAFQLAKKLG-----KNPREIAEEIAEK----LDT 69 (577)
T ss_pred CHHHHHHHHHHHHHHHhhccccccccceecCCCC---CcccccchHHHHHhhhcC-----CCHHHHHHHHHHh----ccc
Confidence 5667778888888887651122345778888888 999999999999999987 8999999999999 776
Q ss_pred CcccccceeEEEEeCCceEEEEeCHHHHHHHHHHHHHcC-CCCC--CCCCCceEEEEeeCCccCCccccchhhHHHHHHH
Q psy15414 556 NPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG-VQPP--TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 632 (1458)
Q Consensus 556 ~~~~~~~i~~vevagpGfiN~~l~~~~~~~~l~~i~~~g-~~~~--~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~ 632 (1458)
+ +.|++|+++|||||||++++.++.+.+.+++..+ ..|+ ..+++++|+||||||||||||||||+|||||||+
T Consensus 70 ~----~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDs 145 (577)
T COG0018 70 D----EIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDS 145 (577)
T ss_pred c----CcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHH
Confidence 5 5799999999999999999999999998888764 4443 3467899999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCC-CCCCChhHHHHHHHHhhhccCCcHHHH-HHHHHHHHHHh
Q psy15414 633 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFK-KRAYQCVVALQ 710 (1458)
Q Consensus 633 LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~-~~~~~i~~l~~iy~~~~~~~~~~~~~~-~~a~~~~~~le 710 (1458)
|+|||+++||+|+|+|||||||+||++++.+++..+.+.. ...+++.++.++|++.++.+++++... .++++.+.++|
T Consensus 146 Laril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e 225 (577)
T COG0018 146 LARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLE 225 (577)
T ss_pred HHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999986665543 234568888999999999888776533 78999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCC--CCC--
Q psy15414 711 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED--RGS-- 783 (1458)
Q Consensus 711 ~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~--~d~-- 783 (1458)
.||+++ ++|++++++++.+++++|++|||.|+. +||++|.+.+.++++.|+++|++|+++|++|++.+. ..|
T Consensus 226 ~~d~~~-~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~ 304 (577)
T COG0018 226 SGDEEA-ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGDD 304 (577)
T ss_pred cCChHH-HHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCCC
Confidence 999999 999999999999999999999998753 588889999999999999999999999999887753 222
Q ss_pred CCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCc
Q psy15414 784 IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 863 (1458)
Q Consensus 784 ~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~ 863 (1458)
+|+||+|||||++|+|||||||+||++ ++||++|||||++|++||+|++++++++|+..+ ...+.|..||++++++|.
T Consensus 305 ~~~vl~KSDGt~lY~t~DIAy~~~K~~-~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~-~~~~~h~~~~l~~~~~g~ 382 (577)
T COG0018 305 KDRVLQKSDGTYLYFTRDIAYHLYKFE-RGFDKLIYVLGADQHGHFKQLKAVLELLGYGPD-KEVLLHQGVGLVRGGEGV 382 (577)
T ss_pred CCeEEEEcCCCeeeehhHHHHHHHHHh-cCCCEEEEEeCCcchhHHHHHHHHHHHhcCCCc-cceEEEEEEeeeECCCCc
Confidence 579999999999999999999999996 899999999999999999999999999998543 257899999999999999
Q ss_pred ccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCc
Q psy15414 864 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 943 (1458)
Q Consensus 864 KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~ 943 (1458)
|||||.|++|+++|++++++++|.+.+.++ +.. + +++|+.||++||||++|+.++.++++|||+.+++++|||
T Consensus 383 kmStR~G~~vtl~dllde~~era~~~~~~~-~~~-----~-~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt 455 (577)
T COG0018 383 KMSTRAGNVVTLDDLLDEAGERAPEEMEEK-EEK-----N-EEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNT 455 (577)
T ss_pred cccccCCceEEHHHHHHHHHHHhhhHhhhh-hhh-----h-HHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCC
Confidence 999999999999999999999999988765 321 1 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy15414 944 AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1023 (1458)
Q Consensus 944 g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~ 1023 (1458)
+|||||||||+|||+||++... ++.....+ ..+.++.|++|+..|.+||+++.+|+++++||.+|.||++||+.||+
T Consensus 456 ~pYvQYA~ARi~SIlrka~e~~--~~~~~~~~-~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~ 532 (577)
T COG0018 456 APYVQYAHARICSILRKAGEDE--LDLSTEAD-ALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNS 532 (577)
T ss_pred chhHHHHHHHHHHHHHhccccc--cccccccc-hhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 9999999999999999996432 11100011 24667789999999999999999999999999999999999999999
Q ss_pred hhhhccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1024 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1024 fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
||+.||||..++ .+++.+||+||.++++||++||+||||++|++|
T Consensus 533 fY~~~~Vl~~~~----~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~e~M 577 (577)
T COG0018 533 FYNACPVLGAEN----EELRAARLALVKATRQVLKNGLDLLGIEAPERM 577 (577)
T ss_pred HHhhCCcCCCCc----HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCC
Confidence 999999986542 236889999999999999999999999999998
No 3
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=2.9e-109 Score=1031.39 Aligned_cols=569 Identities=50% Similarity=0.841 Sum_probs=503.0
Q ss_pred HHHHhhhhhhcccccCCcceeEeecCcccccccccchhchHHHHHHHHhhcCCC-CChhhHHHHHHHhhcccccCCcccc
Q psy15414 482 SDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLA 560 (1458)
Q Consensus 482 ~ell~dAi~~a~~~~~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~-~~P~~IA~~i~~~i~~~l~~~~~~~ 560 (1458)
...+.++++.+++......+.++.|+++ +||||++|+||.|||.++.+|.. ++|.+||++|++. |...
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~---~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~----l~~~---- 72 (576)
T PLN02286 4 AKLFEASLRLTVPDEPSVEPLVAACTNP---KFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKN----LPAS---- 72 (576)
T ss_pred HHHHHHHHHHhcCcccccCeEEecCCCC---CCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHh----Cccc----
Confidence 3445555555443222224668888888 99999999999999988634333 7999999999999 6543
Q ss_pred cceeEEEEeCCceEEEEeCHHHHHHHHHHHHHcCCCCC-CCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHH
Q psy15414 561 KVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP-TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEY 639 (1458)
Q Consensus 561 ~~i~~vevagpGfiN~~l~~~~~~~~l~~i~~~g~~~~-~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~ 639 (1458)
++|++|+++|||||||+|++.++.+.+..++..+..|+ ....+++|+||||||||||||||||+|||||||+|+|||++
T Consensus 73 ~~i~~v~vagpGfiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~ 152 (576)
T PLN02286 73 EMIESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEF 152 (576)
T ss_pred cceeeEEEcCCCeEEEEECHHHHHHHHHHHHHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHH
Confidence 57999999999999999999999999988887776653 22356899999999999999999999999999999999999
Q ss_pred cCCcEEEEeecCCchhHHHHHHHHHHhhcCCCC-CCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHH
Q psy15414 640 LGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 718 (1458)
Q Consensus 640 ~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~-~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~ 718 (1458)
+||+|+|+|||||||+||++++.++...+++.. .+..++.++..+|+++++.+++++++++++++.+.+||+||+++++
T Consensus 153 ~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~ 232 (576)
T PLN02286 153 SGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRA 232 (576)
T ss_pred cCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999876666532 2345788898899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCEEecccccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCCCCCCcEEEcCCCCccCC
Q psy15414 719 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYD 798 (1458)
Q Consensus 719 lw~~~~~~s~~~f~~~y~~L~i~f~~~geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~d~~~~vL~ksDGt~tY~ 798 (1458)
+|++++++++++|+++|++|||+|+..|||+|.+.+.++++.|+++|++|++||++|+++++.+ .|+||+||||++||+
T Consensus 233 lw~~~~~~~~~~~~~~y~~l~V~fd~~ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~-~~~vl~ksDGt~tY~ 311 (576)
T PLN02286 233 AWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFD-IPLIVVKSDGGFNYA 311 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeeeecCchhhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCC-CceEEEECCCchhhH
Confidence 9999999999999999999999998788999998889999999999999999999999887654 578999999999999
Q ss_pred CcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCC-CcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 799 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNP-NKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 799 trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~-~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
|+|||||+||++++++|++|||||++|++||+|++++++++||.++ +..++.|+.||+|++.+|+|||||+|++|+++|
T Consensus 312 t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~d 391 (576)
T PLN02286 312 STDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVD 391 (576)
T ss_pred HHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHH
Confidence 9999999999988899999999999999999999999999998422 135799999999987888899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHH
Q psy15414 878 LLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 957 (1458)
Q Consensus 878 LLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SI 957 (1458)
||+++..+|.+.+.+++..+.+++++.+++++.+|++|+||++|+.++.++++|||+++++++||+||||||||||+|||
T Consensus 392 lldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SI 471 (576)
T PLN02286 392 LLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSI 471 (576)
T ss_pred HHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHH
Confidence 99999999999998876556788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q psy15414 958 ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEG 1037 (1458)
Q Consensus 958 lrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~vL~k~~~~ 1037 (1458)
+||++.....+. ..++..+.++.|++|+..|.+||++|.+++++++||.+|.||++||+.||+||+.|||+..++
T Consensus 472 lrKa~~~~~~~~---~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~-- 546 (576)
T PLN02286 472 IRKSGKDIDELK---KTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEE-- 546 (576)
T ss_pred HHhccCcccccc---ccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCccCCCCc--
Confidence 999864211110 011234668999999999999999999999999999999999999999999999999985321
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1038 KIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1038 ~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
..+||+||.||++||++||.||||++|++|
T Consensus 547 -----~~aRL~L~~a~~~vL~~gL~LLGI~~~e~M 576 (576)
T PLN02286 547 -----ETSRLLLCEATAIVMRKCFHLLGITPLYRL 576 (576)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 178999999999999999999999999998
No 4
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.3e-103 Score=973.47 Aligned_cols=555 Identities=29% Similarity=0.485 Sum_probs=486.4
Q ss_pred HHHHHHHHHhhhhhhcccccCCcceeEeecCcccccccccchhchHHHHHHHHhhcCCCCChhhHHHHHHHhhcccccCC
Q psy15414 477 VRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 556 (1458)
Q Consensus 477 l~~~L~ell~dAi~~a~~~~~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~~~P~~IA~~i~~~i~~~l~~~ 556 (1458)
+...+.+.+.+++...... ....+.++.|++| +||||++| +|.|||.++ ++|.+||++|++. |..
T Consensus 3 ~~~~i~~~l~~~l~~~~~~-~~~~~~i~~~~~~---~~GD~~~~-~~~lak~~~-----~~P~~iA~~i~~~----l~~- 67 (562)
T PRK12451 3 YKTQFAESLSNIFTNELTQ-QQILDLIETPKQD---EFGDAAFP-CFSLAKQYK-----KAPAIIAKEVAEK----LSD- 67 (562)
T ss_pred HHHHHHHHHHHHHHhhccc-cccceeeecCCCC---CCCcccch-HHHHHHHcC-----CCHHHHHHHHHHh----ccc-
Confidence 3455666666666543211 1113557778888 99999999 699999886 8999999999999 643
Q ss_pred cccccceeEEEEeCCceEEEEeCHHHHHHH-HHHHHHcCCCCCC--CCCCceEEEEeeCCccCCccccchhhHHHHHHHH
Q psy15414 557 PSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 633 (1458)
Q Consensus 557 ~~~~~~i~~vevagpGfiN~~l~~~~~~~~-l~~i~~~g~~~~~--~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~L 633 (1458)
+.|++++++|| ||||+|+++++.+. +.+++..+..|+. .+++++|+||||||||+|||||||+|||||||+|
T Consensus 68 ----~~i~~ve~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l 142 (562)
T PRK12451 68 ----PFFTKVEAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNAL 142 (562)
T ss_pred ----cccceeEeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHH
Confidence 35899999996 99999999988766 5677777666753 2357899999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCC-CCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcC
Q psy15414 634 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 712 (1458)
Q Consensus 634 aRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~-~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~g 712 (1458)
+|||+++||+|+++|||||||+||++++.++. ++++. ..+..++.++..+|+++++.+++++++++++++.+.+||+|
T Consensus 143 ~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~-~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~g 221 (562)
T PRK12451 143 KHIAEKCGYEVVGINYIGDWGTQFGKLITAYK-KWGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEG 221 (562)
T ss_pred HHHHHHCCCCeEEEeeecCchHHHHHHHHHHH-HhCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999885 34432 12345788999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-ccccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCCCCCCcEEEcC
Q psy15414 713 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKS 791 (1458)
Q Consensus 713 d~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~d~~~~vL~ks 791 (1458)
|++..++|+.++++++++|+++|++|||.|++ .+||+|.+.+.++++.|+++|++|++||++|++.++.+.+|+||+||
T Consensus 222 d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~g~~~~vl~ks 301 (562)
T PRK12451 222 DEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKS 301 (562)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecccCCCceEEEeC
Confidence 99999999999999999999999999999975 48899988889999999999999999999998775432247999999
Q ss_pred CCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCC
Q psy15414 792 DGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD 871 (1458)
Q Consensus 792 DGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gn 871 (1458)
||++||+|+|||||.||++++++|++|||||++|++||+|++++++++||. ++.++.|+.||+|++ +|+|||||+|+
T Consensus 302 DGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~--~~~~l~h~~~g~V~~-~g~kmStR~G~ 378 (562)
T PRK12451 302 DGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYT--WVDGMEHVPFGLILK-DGKKMSTRKGR 378 (562)
T ss_pred CCccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCC--cccCeEEEeeeeEec-CCCCCcCCCCC
Confidence 999999999999999999888999999999999999999999999999984 245799999999987 67799999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHH
Q psy15414 872 TVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAY 951 (1458)
Q Consensus 872 vI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~ 951 (1458)
+|+++||++++..+|.+.+.+++++ + ++.+++++.+|++|+||++|+.++.++++||||++++++||+||||||+|
T Consensus 379 ~v~l~dLldea~~~a~~~~~~~~~~--l--~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~ 454 (562)
T PRK12451 379 VVLLEEVLEEAIELAKQNIEEKNPN--L--KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTH 454 (562)
T ss_pred eeEHHHHHHHHHHHHHHHHHhhccc--c--ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHH
Confidence 9999999999999999999887643 3 33677999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccc
Q psy15414 952 TRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCI 1031 (1458)
Q Consensus 952 aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~vL 1031 (1458)
||+|||+||++.... . ....++++.|++|+..+..||+.+.+++++++||.+|.|+++||+.||+||+.|+|+
T Consensus 455 AR~~SIlrka~~~~~---~----~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl 527 (562)
T PRK12451 455 ARACSILRKESVEFE---T----CTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRIL 527 (562)
T ss_pred HHHHHHHHhcCCCcc---c----cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999863211 0 112356899999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1032 EKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1032 ~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
..+ ++..+||+||.||++||++||.||||+||++|
T Consensus 528 ~~~------~~~~~RL~L~~a~~~vL~~gL~LLGI~~~erM 562 (562)
T PRK12451 528 EES------AEKDSRLALVYAVTVVLKEGLRLLGVEAPEEM 562 (562)
T ss_pred CCH------HHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 321 34789999999999999999999999999998
No 5
>KOG4426|consensus
Probab=100.00 E-value=5.2e-100 Score=850.63 Aligned_cols=452 Identities=52% Similarity=0.829 Sum_probs=413.4
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCccccccccchhhhcCCccccc
Q psy15414 4 KELKLKEFISKVNELSTKGFISESATEDVLAAQLQNTKLKHRLAILQRAIAEEEKKQGISSSISSQTKGAAKKMNVPVRD 83 (1458)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1458)
.|.|.+.+.+.++...++..+... +..+|.+|.|||||+.||++||++++.++ ...
T Consensus 14 ~~~~~r~lta~~k~~~s~e~L~~~----l~~~q~~n~klk~r~sil~KSia~~~a~~--------------------~~~ 69 (656)
T KOG4426|consen 14 AELENRLLTAMIKGEKSDELLEHI----LVQLQKENDKLKYRLSILEKSIAEEAAKN--------------------EKF 69 (656)
T ss_pred HHHHhhhHHHHHhhhcccchhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------------ccc
Confidence 578899999999998888888742 88999999999999999999999997763 233
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCCCcccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhhh
Q psy15414 84 RMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSEL 163 (1458)
Q Consensus 84 ~~~~~~~l~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~l 163 (1458)
+.|++.+|+++|..||+.++|++++.++.+.++. .++|||||||.||.|++.+|.|+..++|++||++|..++
T Consensus 70 ~~ni~~~L~~lF~~aik~a~Pd~~~vp~liaps~---~~kFGDYQCNnAMgl~~~lK~kg~~~~P~~va~~l~~~l---- 142 (656)
T KOG4426|consen 70 TSNIFRRLQSLFDVAIKLAFPDLPDVPLLIAPSP---NAKFGDYQCNNAMGLSSKLKGKGINKRPRDVAQELQKHL---- 142 (656)
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCCCCceeccCc---ccccccccccchhhHHHHHhhcCCccCcHHHHHHHHhhC----
Confidence 4568999999999999999999877777666543 369999999999999999999999999999999998765
Q ss_pred ccCCccccchheeeeeCCceeEEeeCHHHHHHHHHHHHHcCCCCCCCCCCcEEEEEecCCCCCCCccccchhhhhHHHHH
Q psy15414 164 ATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 243 (1458)
Q Consensus 164 ~~~~~~~~~i~~vevagpGfIN~~l~~~~~~~~l~~i~~~g~~~~~~~~~~~V~VEfsSpN~akplHvGHlRstiIGdsl 243 (1458)
|.+ ++|+|++||||||||++|+..|.+..|..++.+|...|.... ++|+||||||||||+|||||||||||||||
T Consensus 143 P~s----e~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~~P~l~~-KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl 217 (656)
T KOG4426|consen 143 PTS----EMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVKLPTLSV-KRVLVDFSSPNIAKEMHVGHLRSTIIGDSL 217 (656)
T ss_pred Cch----hhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCCCcccce-eeEEEecCCCcHHHHhhhhhhhhhhHhHHH
Confidence 443 589999999999999999999999999999999999887765 789999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcCC
Q psy15414 244 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 323 (1458)
Q Consensus 244 aril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd 323 (1458)
||+|||.||+|.|.||+|||||||||||+|++++||+++...|||.||+-||++++++|++||+|+++|++++++||.||
T Consensus 218 ~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggd 297 (656)
T KOG4426|consen 218 CRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGD 297 (656)
T ss_pred HHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcceecccchhhhhhhHHHHHHHHHHCCCeeecCCCeEEecCCCCCCceEEEecCC
Q psy15414 324 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDG 403 (1458)
Q Consensus 324 ~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~~gEs~y~~~~~~vv~~L~~kg~~~~~dGa~~~~~~~~~~~~~vl~kSDG 403 (1458)
|..+++|..||++|+++|+.+|+||+|++.+.|||||++.|.+||++|+.+|+++++||+.++|.++- .+|++|+||||
T Consensus 298 p~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~-~IPLtvVKSDG 376 (656)
T KOG4426|consen 298 PDIRKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGC-DIPLTVVKSDG 376 (656)
T ss_pred ChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCC-CcceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 58999999999
Q ss_pred ccccchhhHHHHHHHhhhcCCCEEEEecCCchHHHHHHHHHHHHHHcCCCCCC----Cccccccc-cccCCCcccccCHH
Q psy15414 404 GFTYDTSDLAAIRQRIEEEKADWIVYVTDHRSYHQVLQAIAEEEKKQGISSSS----SSQTKGTA-KKMNVPVRDRMSVR 478 (1458)
Q Consensus 404 ~~tY~t~DiA~~~~r~~~~~~d~iIyv~D~~~~~~~~~a~~~a~~~~g~~~~~----~~~~~G~~-~kmskr~gt~~~l~ 478 (1458)
++||.|+|+|+++||+.++++||+|||||.+|. ++|..++.|+++.||.... .+..||.+ +.++|||+||.+-.
T Consensus 377 GftYdtsDlaAl~yRl~EEkadwiIYVvD~GQs-~Hf~t~fkAar~~gwld~~~~RV~HvgFGlVLGeD~KkFkTRsget 455 (656)
T KOG4426|consen 377 GFTYDTSDLAALKYRLNEEKADWIIYVVDSGQS-QHFNTIFKAARKAGWLDPTYPRVEHVGFGLVLGEDKKKFKTRSGET 455 (656)
T ss_pred CcccccchHHHHHHHHHHhhcCeEEEEeeCchh-HHHHHHHHHHHHcCccCCCccceeeeeeeeEEccCcccccccccce
Confidence 999999999999999999999999999999984 5699999999999995432 24578887 58899999998877
Q ss_pred HHHHHHHhhhhhhcc
Q psy15414 479 DYLSDVFTHAVQVAF 493 (1458)
Q Consensus 479 ~~L~ell~dAi~~a~ 493 (1458)
..|.+++.++..+..
T Consensus 456 VrL~DLLdEg~kRs~ 470 (656)
T KOG4426|consen 456 VRLLDLLDEGKKRSK 470 (656)
T ss_pred eeHHHHHHHHHHHHH
Confidence 777777777766654
No 6
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=1.1e-96 Score=922.54 Aligned_cols=555 Identities=34% Similarity=0.505 Sum_probs=480.3
Q ss_pred HHHHHHHhhhhhhcccccCCcceeEeecCcccccccccchhchHHHHHHHHhhcCCCCChhhHHHHHHHhhcccccCCcc
Q psy15414 479 DYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 558 (1458)
Q Consensus 479 ~~L~ell~dAi~~a~~~~~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~~~P~~IA~~i~~~i~~~l~~~~~ 558 (1458)
+.|.+.+.+++...... ....+.++.|+++ .||||+||+||.+||.++ ++|.+||++|++. |...
T Consensus 3 ~~i~~~~~~~l~~~~~~-~~~~~~i~~~~~~---~~GD~~~~~a~~lak~~~-----~~P~~iA~~i~~~----l~~~-- 67 (566)
T TIGR00456 3 TLLKDEISAALLKAGLS-KESEILLEETPNP---EFGDYASNIAFPLAKVLK-----KNPRAIAEEIVLK----LKTG-- 67 (566)
T ss_pred HHHHHHHHHHHHhcccc-cccceeeecCCCC---CCCccccHHHHHHHHHcC-----CCHHHHHHHHHHh----CCCc--
Confidence 44555666666544211 1113567778888 999999999999999886 8999999999999 6543
Q ss_pred cccceeEEEEeCCceEEEEeCHHHHHHH-HHHHHHcCCCCCCC-CCCceEEEEeeCCccCCccccchhhHHHHHHHHHHH
Q psy15414 559 LAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNGVQPPTL-NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL 636 (1458)
Q Consensus 559 ~~~~i~~vevagpGfiN~~l~~~~~~~~-l~~i~~~g~~~~~~-~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRi 636 (1458)
++|++|+++|| ||||+|+++++.+. ++.+++.+..|+.. ..+++|+||||||||+|||||||+||+++||+|+|+
T Consensus 68 --~~i~~ve~~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~ 144 (566)
T TIGR00456 68 --EIIEKVEAAGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARI 144 (566)
T ss_pred --CcEeEEEEeCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHH
Confidence 67999999998 99999999766665 67888777777532 126799999999999999999999999999999999
Q ss_pred HHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCC--CCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCCh
Q psy15414 637 LEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL--TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 714 (1458)
Q Consensus 637 l~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~--~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~ 714 (1458)
|+++||+|+|+|||||||+||++++.++...+.+.. ....|+.++..+|+++++.+++++++.+++++.+.+||.||+
T Consensus 145 ~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~ 224 (566)
T TIGR00456 145 LEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDE 224 (566)
T ss_pred HHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCH
Confidence 999999999999999999999999999865443321 234578889889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCC-CC-CCcEEE
Q psy15414 715 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDR-GS-IPMTIV 789 (1458)
Q Consensus 715 e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~-d~-~~~vL~ 789 (1458)
+...+|+.+++++++.|+++|++|||+|+. ++|+++.+.+.++++.|+++|++|++ |++|++.++. +. .|+||+
T Consensus 225 ~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl~ 303 (566)
T TIGR00456 225 EAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVLQ 303 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccccCCCCCeEEE
Confidence 999999999999999999999999998863 36778888999999999999999977 9999876543 21 469999
Q ss_pred cCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCccccccc
Q psy15414 790 KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRS 869 (1458)
Q Consensus 790 ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~ 869 (1458)
||||++||+|+|||||.+|+++ ++|++|||||++|++||+|++++++++|+.. ..++.|++||+|.+ .|||||+
T Consensus 304 ksDGt~~Y~t~DiA~~~~k~~~-~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~--~~~l~h~~~~~V~~---~kmSkr~ 377 (566)
T TIGR00456 304 KSDGTYLYLTRDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQFFAILEKLGFYK--KKELIHLNFGMVPL---GSMKTRR 377 (566)
T ss_pred ECCCCceechhhHHHHHHHHhc-CCCEEEEEecCcHHHHHHHHHHHHHHcCCCC--CCceEEEEEEEEEC---CCCCccC
Confidence 9999999999999999999975 9999999999999999999999999999843 45899999999964 5899999
Q ss_pred CCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHH
Q psy15414 870 GDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLY 949 (1458)
Q Consensus 870 GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqY 949 (1458)
||+|+++|+++++.++|.+.+.++++. +.+++++.+|++|+||++|+..+.+|++|||++++++++|++|||||
T Consensus 378 Gn~V~~~dll~~~~~ra~~~i~~~~~~------~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqY 451 (566)
T TIGR00456 378 GNVISLDNLLDEASKRAGNVITIKNDL------EEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQY 451 (566)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhcCCc------cHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHH
Confidence 999999999999999999999877542 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc
Q psy15414 950 AYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1029 (1458)
Q Consensus 950 a~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~ 1029 (1458)
+|+|+|||++|++... ++.. . ....+.++.|++|+..+.+||+.+.+++++++|+.+|.|+++||+.||+||+.||
T Consensus 452 a~aR~~SIlrK~~~~~--~~~~-~-~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~ 527 (566)
T TIGR00456 452 AHARICSILRKADIDG--EKLI-A-DDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACP 527 (566)
T ss_pred HHHHHHHHHHhccccc--cccc-c-cccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999985432 1110 0 1112347889999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1030 CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1030 vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
||..++ +++..+||.||.||++||++||.||||++|++|
T Consensus 528 Vl~~~~----~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~e~M 566 (566)
T TIGR00456 528 VLDAEN----ENLAAARLALLKATRQTLKNGLQLLGIEPPERM 566 (566)
T ss_pred cCCCCC----HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 985432 246789999999999999999999999999998
No 7
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-87 Score=828.20 Aligned_cols=497 Identities=33% Similarity=0.520 Sum_probs=426.0
Q ss_pred CHHHHHHHHHhhhhhhcccccCCcceeEeecCcccccccccchhchHHHHHHHHhhcCCCCChhhHHHHHHHhhcccccC
Q psy15414 476 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 555 (1458)
Q Consensus 476 ~l~~~L~ell~dAi~~a~~~~~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~~~P~~IA~~i~~~i~~~l~~ 555 (1458)
.+.+.+.+.+.+++...... ......++.|+++ ++|||++|.||.+||.++ ++|.+||++|++.
T Consensus 4 ~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~---~~gd~~~~~a~~lak~~~-----~~p~~ia~~i~~~------- 67 (507)
T PRK01611 4 DIKELLAEALAAALEAGGLP-ELPAVLIERPKDP---EHGDYATNVAMQLAKKLK-----KNPREIAEEIVEA------- 67 (507)
T ss_pred HHHHHHHHHHHHHHHhcccc-ccccceeecCCCC---CccCeecHHHHHHHHHcC-----CCHHHHHHHHHhh-------
Confidence 34555666666666543211 1112446778888 999999999999999886 8999999999965
Q ss_pred CcccccceeEEEEeCCceEEEEeCHHHHHHHHHHHHHcCCCCCC--CCCCceEEEEeeCCccCCccccchhhHHHHHHHH
Q psy15414 556 NPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 633 (1458)
Q Consensus 556 ~~~~~~~i~~vevagpGfiN~~l~~~~~~~~l~~i~~~g~~~~~--~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~L 633 (1458)
|++|+++|||||||+|+++++.+.+..++..+..|+. .+++++|+||||||||+||+||||+|++++||+|
T Consensus 68 -------i~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~l 140 (507)
T PRK01611 68 -------IEKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDAL 140 (507)
T ss_pred -------eeEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHH
Confidence 6799999999999999999999999888776666753 2467899999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCC
Q psy15414 634 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 713 (1458)
Q Consensus 634 aRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd 713 (1458)
+|+|+++||+|+++||+||||+||++++.++.
T Consensus 141 aR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~------------------------------------------------ 172 (507)
T PRK01611 141 ARILEFAGYDVTREYYVNDAGTQIGMLIASLE------------------------------------------------ 172 (507)
T ss_pred HHHHHHcCCcEEEEeeeCCccHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999997654331
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHHHHHHcCCeE-eeCCcEEEEcCCCC-CCCcEE
Q psy15414 714 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE-LDDGRKIMWGEDRG-SIPMTI 788 (1458)
Q Consensus 714 ~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~~L~~kG~~y-e~dGa~~~~~d~~d-~~~~vL 788 (1458)
..|+.+++.+++.|.++|++|||.|+. .+++.+.+.+.++++.|+++|++| +++|++|+.++... ..|+||
T Consensus 173 ----~~~~~~~~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl 248 (507)
T PRK01611 173 ----LLWRKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVL 248 (507)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEE
Confidence 158899999999999999999998852 234456788999999999999999 99999998765432 136999
Q ss_pred EcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccc
Q psy15414 789 VKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTR 868 (1458)
Q Consensus 789 ~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR 868 (1458)
+||||++||+|+|||||.||+++ +|++|||||++|++||+|++++++++|+..+....+.|..||+|++.+|+|||||
T Consensus 249 ~ksdG~~~Y~t~Dia~~~~k~~~--~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR 326 (507)
T PRK01611 249 IKSDGTYTYFTRDIAYHLYKFER--FDRVIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTR 326 (507)
T ss_pred EECCCCccchHHHHHHHHHHHhh--cCEEEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCC
Confidence 99999999999999999999975 8999999999999999999999999998432234599999999999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHH
Q psy15414 869 SGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 948 (1458)
Q Consensus 869 ~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylq 948 (1458)
+||+|+|+||++++..+|.+.+.++ ++|+.+|++|+||++|+.++.+++.|||++++++++++++|+|
T Consensus 327 ~Gn~i~l~dll~~a~g~~~~~~~~~------------~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvq 394 (507)
T PRK01611 327 AGNVVTLDDLLDEAVGRARELIEEK------------EIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQ 394 (507)
T ss_pred CCceeEHHHHHHHHHHHHHHHHHhh------------hhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHH
Confidence 9999999999999666777777543 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhc
Q psy15414 949 YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1028 (1458)
Q Consensus 949 Ya~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~ 1028 (1458)
|+|+|++||++|++... +.. ....+.++.|+.|+..|.+||+++.+++++++||.+|.||++||+.||+||+.|
T Consensus 395 Ya~aR~~sil~k~~~~~--~~~----~~~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~ 468 (507)
T PRK01611 395 YAHARICSILRKAAEAG--IDL----LLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRV 468 (507)
T ss_pred HHHHHHHHHHHhhhccC--ccc----cccccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999975321 100 001245788999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1029 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1029 ~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
+ +..+.+ ++..+||+||.|+++||++||.||||++|++|
T Consensus 469 ~-l~~~~~----~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~e~M 507 (507)
T PRK01611 469 L-LKDEEE----ELRNARLALVKATAQVLKNGLDLLGISAPERM 507 (507)
T ss_pred C-CCCChH----HHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 8 643211 15789999999999999999999999999998
No 8
>KOG1195|consensus
Probab=100.00 E-value=9.1e-83 Score=731.79 Aligned_cols=513 Identities=29% Similarity=0.403 Sum_probs=451.3
Q ss_pred CChhhHHHHHHHhhcccccCCcccccceeEEEEeCCceEEEEeCHHHHHHHH-HHHHHcCCCCCC--CCCCceEEEEeeC
Q psy15414 536 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI-KDIIVNGVQPPT--LNKKLRVLVDFSS 612 (1458)
Q Consensus 536 ~~P~~IA~~i~~~i~~~l~~~~~~~~~i~~vevagpGfiN~~l~~~~~~~~l-~~i~~~g~~~~~--~~~~~kV~VE~~S 612 (1458)
..|.+.|...++. ++.+ ..++++...|| |++|+|++..+.+.+ ..+..++..|+. .+++++|+|||||
T Consensus 48 ~~~~~~a~~~~e~----~~~~----~~v~~~~~~~~-~~~f~ln~~~~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSS 118 (567)
T KOG1195|consen 48 VQGKEDALRWAEA----LPCN----RIVEEVGASGP-FVQFFLNRRRLIKSVLPIIEEQREKYGKNELGSGKKIVVEFSS 118 (567)
T ss_pred cCCHHHHHHHHHh----cccc----cchHHHhcCCC-eEEEEecHHHHHHHHHHHHHHHhcccCccccccCceEEEEecC
Confidence 3455889999988 7765 67899999987 999999998766664 566667777754 4678999999999
Q ss_pred CccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhcc
Q psy15414 613 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 692 (1458)
Q Consensus 613 pNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~ 692 (1458)
||++||+|+||+||||||..++|+.+..||+|+++||+||||+|||+++..+...-.+.....+||.+|-+.|+++++..
T Consensus 119 PNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~ 198 (567)
T KOG1195|consen 119 PNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDA 198 (567)
T ss_pred CCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999998886333333344679999999999999988
Q ss_pred CCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-cccc-ccchhHHHHHHHHHHcCCeEee
Q psy15414 693 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGES-FYQKHMEQLVPYLEKKGLLELD 770 (1458)
Q Consensus 693 ~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS-~~~~~v~~vi~~L~~kG~~ye~ 770 (1458)
+.+++..+.|++.+.+||.||.+.+.+|++|++.|+..+.++|+||||.|+. .||| .+.+.+.++++.+++.|++.+.
T Consensus 199 ~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESqv~~e~~~~~~d~~rs~~l~~e~ 278 (567)
T KOG1195|consen 199 EKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQVSNEKMQEALDLLRSANLTEEI 278 (567)
T ss_pred hhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHHHHHHHHHHHHHHHHhcCCcccC
Confidence 8888888999999999999999999999999999999999999999999964 6788 4678899999999999988888
Q ss_pred CCcEEEEcCCCCC--CCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcce
Q psy15414 771 DGRKIMWGEDRGS--IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 848 (1458)
Q Consensus 771 dGa~~~~~d~~d~--~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~ 848 (1458)
||+.++++.+.+. .-.++.|||||++|.|||||++++|..++.||++|||++.+|..||.++|.+++++|+ .|+.+
T Consensus 279 dG~~vidL~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf~~lf~ilk~mg~--~~a~~ 356 (567)
T KOG1195|consen 279 DGTIVIDLSKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHFCQLFEILKKMGF--DWAKK 356 (567)
T ss_pred CCcEEEEecccCcccceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHHHHHHHHHHHHHhCc--hhhhh
Confidence 9999998865442 1246889999999999999999999999999999999999999999999999999998 36889
Q ss_pred EEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCc
Q psy15414 849 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLD 928 (1458)
Q Consensus 849 ~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d 928 (1458)
++|++||+|.+ ||||+|+++.++|+++++.+.|++.|..... .....+..+++|+.+|++||.+.++...+.++
T Consensus 357 ~qHV~~G~v~G-----msTRkG~~~fl~dil~e~re~m~e~M~s~~t-~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~ 430 (567)
T KOG1195|consen 357 LQHVNFGRVQG-----MSTRKGKVVFLDDILEEAREQMLEVMASNKT-KPVQMANPDEVADRLGLSAVIVQDFKGRRISN 430 (567)
T ss_pred cceeccccccc-----ccccCCceeeHHHHHHHHHHHHHHHHHhccC-CCCCCCCHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 99999999843 9999999999999999999999999875432 24455667889999999999999999999999
Q ss_pred cccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy15414 929 YVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1008 (1458)
Q Consensus 929 ~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~ 1008 (1458)
|.|+|+++.+++|+||+||||+|+|+.|+++|++... .+.....++..+++|....|+..|.+||+++++++++++|+
T Consensus 431 yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~--~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~ 508 (567)
T KOG1195|consen 431 YEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVT--LDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPC 508 (567)
T ss_pred ceEEhhhhheecCCchHHHHHHHHHHHHHHHhccccC--chhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcch
Confidence 9999999999999999999999999999999986321 11111223455677787788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1009 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1009 ~l~~yL~~LA~~fN~fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
.++.||+.||++++++|...+|+.. +.++..+||+|+.|+++||.+||++|||+|+++|
T Consensus 509 ~lV~YL~~La~a~s~~yk~l~V~d~-----~~eia~aRL~Lf~AvRqVL~ngm~lLGitPv~~M 567 (567)
T KOG1195|consen 509 TLVTYLFKLAHAVSSAYKILWVKDS-----PMEIALARLLLFSAVRQVLNNGMRLLGITPVDRM 567 (567)
T ss_pred hHHHHHHHHHHHHHhHHhheeecCC-----cHHHHHHHHHHHHHHHHHHHhHHHHhCCCccccC
Confidence 9999999999999999999998733 3467999999999999999999999999999987
No 9
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-78 Score=744.71 Aligned_cols=380 Identities=32% Similarity=0.496 Sum_probs=331.0
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCCCcccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhhhc
Q psy15414 85 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 164 (1458)
Q Consensus 85 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~l~ 164 (1458)
|++++.+++.+.+++.++.-......+.++.|+ +++|||||||+||.|||.+ ++||++||++|++.| .
T Consensus 1 m~i~~~l~~~i~~~l~~~~~~~~~~~~~ve~~~---~~~~GD~a~n~a~~laK~~-----~~~P~eiA~~i~~~l----~ 68 (577)
T COG0018 1 MNIKQLLKEKIAEALSAAGLDVEEIEILVEPPK---DPEHGDFATNIAFQLAKKL-----GKNPREIAEEIAEKL----D 68 (577)
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccceecCC---CCCcccccchHHHHHhhhc-----CCCHHHHHHHHHHhc----c
Confidence 567888999999999887611122334555554 3689999999999999998 899999999999986 2
Q ss_pred cCCccccchheeeeeCCceeEEeeCHHHHHHHHHHHHHcCC-CC--CCCCCCcEEEEEecCCCCCCCccccchhhhhHHH
Q psy15414 165 TNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV-QP--PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 241 (1458)
Q Consensus 165 ~~~~~~~~i~~vevagpGfIN~~l~~~~~~~~l~~i~~~g~-~~--~~~~~~~~V~VEfsSpN~akplHvGHlRstiIGd 241 (1458)
.. +.+++|+++|||||||+|++.++.+.+.+++..+. .+ ...+++++|+||||||||||||||||+|||||||
T Consensus 69 ~~----~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGD 144 (577)
T COG0018 69 TD----EIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGD 144 (577)
T ss_pred cc----CcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHH
Confidence 22 26899999999999999999999999999887643 33 2456788999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCC-CCCCChhhHHHHHHHhhhhcCCCHHHH-HHHHHHHHHH
Q psy15414 242 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFK-KRAYQCVVAL 319 (1458)
Q Consensus 242 slaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~-~~~~~i~~l~~~y~~~~~~~~~~~~~~-~~a~~~~~~l 319 (1458)
||||||+|+||+|+|+|||||||+|||+|+.+++..+.+.. ...+++.++.++|+++++.+++++... +++++.++++
T Consensus 145 sLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~ 224 (577)
T COG0018 145 SLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKL 224 (577)
T ss_pred HHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999987766544 244578999999999999998876532 6788999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHHHHHHHHCCCeeecCCCeEEecCC----CC
Q psy15414 320 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RG 392 (1458)
Q Consensus 320 e~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~vv~~L~~kg~~~~~dGa~~~~~~~----~~ 392 (1458)
|.||+++ .+|++++++++++++++|++|||+||. +|||+|+++++++++.|+++|++++++||+|++.++ .+
T Consensus 225 e~~d~~~-~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd 303 (577)
T COG0018 225 ESGDEEA-ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGD 303 (577)
T ss_pred hcCChHH-HHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCC
Confidence 9999999 999999999999999999999999984 699999999999999999999999999999887653 34
Q ss_pred CCceEEEecCCccccchhhHHHHHHHhhhcCCCEEEEe--cCCchHHHHHHHHHHHHHHcCCCCCC-C--c-----cccc
Q psy15414 393 SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV--TDHRSYHQVLQAIAEEEKKQGISSSS-S--S-----QTKG 462 (1458)
Q Consensus 393 ~~~~vl~kSDG~~tY~t~DiA~~~~r~~~~~~d~iIyv--~D~~~~~~~~~a~~~a~~~~g~~~~~-~--~-----~~~G 462 (1458)
.+|+||+|||||+||+|+|||||+||++ ++||++||| +||++|++++++++++ +|+.+.. . + +++|
T Consensus 304 ~~~~vl~KSDGt~lY~t~DIAy~~~K~~-~~~d~~IyV~gadq~~~~~ql~~~l~~---~g~~~~~~~~~h~~~~l~~~~ 379 (577)
T COG0018 304 DKDRVLQKSDGTYLYFTRDIAYHLYKFE-RGFDKLIYVLGADQHGHFKQLKAVLEL---LGYGPDKEVLLHQGVGLVRGG 379 (577)
T ss_pred CCCeEEEEcCCCeeeehhHHHHHHHHHh-cCCCEEEEEeCCcchhHHHHHHHHHHH---hcCCCccceEEEEEEeeeECC
Confidence 5799999999999999999999999997 799999997 7888999999988765 7987764 2 2 3678
Q ss_pred cccccCCCcccccCHHHHHHHHH
Q psy15414 463 TAKKMNVPVRDRMSVRDYLSDVF 485 (1458)
Q Consensus 463 ~~~kmskr~gt~~~l~~~L~ell 485 (1458)
+.+|||||.|+.+++.+.++++.
T Consensus 380 ~g~kmStR~G~~vtl~dllde~~ 402 (577)
T COG0018 380 EGVKMSTRAGNVVTLDDLLDEAG 402 (577)
T ss_pred CCccccccCCceEEHHHHHHHHH
Confidence 88999999999999999999999
No 10
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=7.5e-76 Score=731.81 Aligned_cols=387 Identities=45% Similarity=0.757 Sum_probs=328.3
Q ss_pred HHHHHHHHHHHhccccCCCCcccccccccccCCccccccchhHHhhHHhhhcCCC-CCHHHHHHHHHHHHhhhhccCCcc
Q psy15414 91 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSL 169 (1458)
Q Consensus 91 l~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~-~~P~~iA~~i~~~l~~~l~~~~~~ 169 (1458)
|...+.+++..+++......+.++.|+ +++|||||||+||.|||.+|.+|.+ ++|++||++|++.| ...
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~i~~~~---~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l----~~~--- 72 (576)
T PLN02286 3 LAKLFEASLRLTVPDEPSVEPLVAACT---NPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNL----PAS--- 72 (576)
T ss_pred HHHHHHHHHHHhcCcccccCeEEecCC---CCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhC----ccc---
Confidence 455566677666643222234455554 3689999999999999998444333 99999999999876 222
Q ss_pred ccchheeeeeCCceeEEeeCHHHHHHHHHHHHHcCCCCC-CCCCCcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHH
Q psy15414 170 AKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP-TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLE 248 (1458)
Q Consensus 170 ~~~i~~vevagpGfIN~~l~~~~~~~~l~~i~~~g~~~~-~~~~~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~ 248 (1458)
+.|++|+|+|||||||+|++.++.+.+..++..+..+. ....+++|+||||||||||||||||+|||||||+|||||+
T Consensus 73 -~~i~~v~vagpGfiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~ 151 (576)
T PLN02286 73 -EMIESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLE 151 (576)
T ss_pred -cceeeEEEcCCCeEEEEECHHHHHHHHHHHHHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHH
Confidence 36899999999999999999999999988887765432 2234579999999999999999999999999999999999
Q ss_pred HcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCC-CCCCChhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHH
Q psy15414 249 YLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 327 (1458)
Q Consensus 249 ~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~-~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~ 327 (1458)
|+||+|+|+|||||||+|||+|+.++...+|+.. ..+.++.++..+|+++++.++++++|++++++.+.+||+||+++.
T Consensus 152 ~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~ 231 (576)
T PLN02286 152 FSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYR 231 (576)
T ss_pred HcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999876677532 345688999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcceecccchhhhhhhHHHHHHHHHHCCCeeecCCCeEEecCCCCCCceEEEecCCcccc
Q psy15414 328 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTY 407 (1458)
Q Consensus 328 ~~w~~~~~~s~~~~~~~y~rl~i~f~~~gEs~y~~~~~~vv~~L~~kg~~~~~dGa~~~~~~~~~~~~~vl~kSDG~~tY 407 (1458)
.+|+.+|++|+++|+++|.+|||+||..|||+|++.++++++.|+++|+++++|||+|+++++.+ .|+||+|||||+||
T Consensus 232 ~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~-~~~vl~ksDGt~tY 310 (576)
T PLN02286 232 AAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFD-IPLIVVKSDGGFNY 310 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeeeecCchhhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCC-CceEEEECCCchhh
Confidence 99999999999999999999999999899999998899999999999999999999999887654 58999999999999
Q ss_pred chhhHHHHHHHhhhcCCCEEEEec--CCchHHHHHHHHHHHHHHcCCCCC---CC--cccccccc-----ccCCCccccc
Q psy15414 408 DTSDLAAIRQRIEEEKADWIVYVT--DHRSYHQVLQAIAEEEKKQGISSS---SS--SQTKGTAK-----KMNVPVRDRM 475 (1458)
Q Consensus 408 ~t~DiA~~~~r~~~~~~d~iIyv~--D~~~~~~~~~a~~~a~~~~g~~~~---~~--~~~~G~~~-----kmskr~gt~~ 475 (1458)
+|+|||||++|+++++||++|||+ ||++|.+++++++++ +||.+. .. ++.+|++. +||||.|+++
T Consensus 311 ~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~---lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v 387 (576)
T PLN02286 311 ASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKR---AGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVV 387 (576)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHH---cCCCccccCCceEEEeeccEECCCCCcccCCCCCee
Confidence 999999999999988999999985 566667777777655 898632 12 34566542 7999999999
Q ss_pred CHHHHHHHHHhhhhhhc
Q psy15414 476 SVRDYLSDVFTHAVQVA 492 (1458)
Q Consensus 476 ~l~~~L~ell~dAi~~a 492 (1458)
++.++|+++...|.+..
T Consensus 388 ~L~dlldea~~~a~~~~ 404 (576)
T PLN02286 388 RLVDLLDEAKSRSKAAL 404 (576)
T ss_pred EHHHHHHHHHHHHHHHH
Confidence 99999988877776665
No 11
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.7e-73 Score=705.92 Aligned_cols=384 Identities=28% Similarity=0.443 Sum_probs=321.6
Q ss_pred cHHHHHHHHHHHHHHHhccccCCCCcccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhhhcc
Q psy15414 86 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 165 (1458)
Q Consensus 86 ~~~~~l~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~l~~ 165 (1458)
++++.+.+.+.+++..+.+.. ...+.++.|+ +++||||||| +|.|||.+ +++|++||++|++.|. .
T Consensus 2 ~~~~~i~~~l~~~l~~~~~~~-~~~~~i~~~~---~~~~GD~~~~-~~~lak~~-----~~~P~~iA~~i~~~l~----~ 67 (562)
T PRK12451 2 DYKTQFAESLSNIFTNELTQQ-QILDLIETPK---QDEFGDAAFP-CFSLAKQY-----KKAPAIIAKEVAEKLS----D 67 (562)
T ss_pred hHHHHHHHHHHHHHHhhcccc-ccceeeecCC---CCCCCcccch-HHHHHHHc-----CCCHHHHHHHHHHhcc----c
Confidence 356677777777776543211 1123345443 3689999999 69999998 7999999999998761 1
Q ss_pred CCccccchheeeeeCCceeEEeeCHHHHHHH-HHHHHHcCCCCCC--CCCCcEEEEEecCCCCCCCccccchhhhhHHHH
Q psy15414 166 NPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 242 (1458)
Q Consensus 166 ~~~~~~~i~~vevagpGfIN~~l~~~~~~~~-l~~i~~~g~~~~~--~~~~~~V~VEfsSpN~akplHvGHlRstiIGds 242 (1458)
+.|+++|++|| ||||+|++.++.+. +..++..|..++. .+++++|+||||||||||||||||+|||||||+
T Consensus 68 -----~~i~~ve~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~ 141 (562)
T PRK12451 68 -----PFFTKVEAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNA 141 (562)
T ss_pred -----cccceeEeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHH
Confidence 14789999995 99999999999665 5677766655442 235689999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcC
Q psy15414 243 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 322 (1458)
Q Consensus 243 laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~g 322 (1458)
|||||+|+||+|+|+|||||||+|||+|+.++....++...+..++.++..+|+++++.+++++++++++++.+.+||+|
T Consensus 142 l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~g 221 (562)
T PRK12451 142 LKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEG 221 (562)
T ss_pred HHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999998643222222445789999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcceecc-cchhhhhhhHHHHHHHHHHCCCeeecCCCeEEecCCCCCCceEEEec
Q psy15414 323 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKS 401 (1458)
Q Consensus 323 d~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~-~gEs~y~~~~~~vv~~L~~kg~~~~~dGa~~~~~~~~~~~~~vl~kS 401 (1458)
|++...+|+.++++|+++++++|++|||+||+ .|||+|++.++++++.|+++|+++++|||+|++.++.+.+|+||+||
T Consensus 222 d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~g~~~~vl~ks 301 (562)
T PRK12451 222 DEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKS 301 (562)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecccCCCceEEEeC
Confidence 99999999999999999999999999999996 59999998899999999999999999999998876544468999999
Q ss_pred CCccccchhhHHHHHHHhhhcCCCEEEEec--CCchHHHHHHHHHHHHHHcCCCCCCC--ccccccc----cccCCCccc
Q psy15414 402 DGGFTYDTSDLAAIRQRIEEEKADWIVYVT--DHRSYHQVLQAIAEEEKKQGISSSSS--SQTKGTA----KKMNVPVRD 473 (1458)
Q Consensus 402 DG~~tY~t~DiA~~~~r~~~~~~d~iIyv~--D~~~~~~~~~a~~~a~~~~g~~~~~~--~~~~G~~----~kmskr~gt 473 (1458)
|||+||+|+|||||++|+++++||++|||+ ||++|.+++++++++ +||.+... ++.+|++ .|||||.|+
T Consensus 302 DGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~---lg~~~~~~l~h~~~g~V~~~g~kmStR~G~ 378 (562)
T PRK12451 302 DGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKK---LGYTWVDGMEHVPFGLILKDGKKMSTRKGR 378 (562)
T ss_pred CCccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHH---cCCCcccCeEEEeeeeEecCCCCCcCCCCC
Confidence 999999999999999999989999999985 566677778777755 89874332 3456654 389999999
Q ss_pred ccCHHHHHHHHHhhhhhhc
Q psy15414 474 RMSVRDYLSDVFTHAVQVA 492 (1458)
Q Consensus 474 ~~~l~~~L~ell~dAi~~a 492 (1458)
.+++.++|++....|.+..
T Consensus 379 ~v~l~dLldea~~~a~~~~ 397 (562)
T PRK12451 379 VVLLEEVLEEAIELAKQNI 397 (562)
T ss_pred eeEHHHHHHHHHHHHHHHH
Confidence 9999998888777776654
No 12
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=5.1e-67 Score=655.25 Aligned_cols=380 Identities=31% Similarity=0.444 Sum_probs=316.0
Q ss_pred HHHHHHHHHHHHHhccccCCCCcccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhhhccCCc
Q psy15414 89 DYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 168 (1458)
Q Consensus 89 ~~l~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~l~~~~~ 168 (1458)
+.|++.+.+++..+... ....+.++.|+ ++.|||||||+||.|||.+ ++||++||++|++.|. ..
T Consensus 3 ~~i~~~~~~~l~~~~~~-~~~~~~i~~~~---~~~~GD~~~~~a~~lak~~-----~~~P~~iA~~i~~~l~----~~-- 67 (566)
T TIGR00456 3 TLLKDEISAALLKAGLS-KESEILLEETP---NPEFGDYASNIAFPLAKVL-----KKNPRAIAEEIVLKLK----TG-- 67 (566)
T ss_pred HHHHHHHHHHHHhcccc-cccceeeecCC---CCCCCccccHHHHHHHHHc-----CCCHHHHHHHHHHhCC----Cc--
Confidence 45666666666554211 00123455443 3689999999999999998 7999999999998762 22
Q ss_pred cccchheeeeeCCceeEEeeCHHHHHH-HHHHHHHcCCCCC--CCCCCcEEEEEecCCCCCCCccccchhhhhHHHHHHH
Q psy15414 169 LAKVIDKIEVAKPGFVNVFLSRVYAGE-QIKDIIVNGVQPP--TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 245 (1458)
Q Consensus 169 ~~~~i~~vevagpGfIN~~l~~~~~~~-~l~~i~~~g~~~~--~~~~~~~V~VEfsSpN~akplHvGHlRstiIGdslar 245 (1458)
+.|+++|++|| ||||+|++.++.+ ++..++..+..++ ..+ +++|+||||||||+|||||||+||++|||+|||
T Consensus 68 --~~i~~ve~~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r 143 (566)
T TIGR00456 68 --EIIEKVEAAGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLK-NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLAR 143 (566)
T ss_pred --CcEeEEEEeCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCC-CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHH
Confidence 36899999998 9999999976665 4667877665554 223 578999999999999999999999999999999
Q ss_pred HHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCC--CCCCChhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcCC
Q psy15414 246 LLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL--TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 323 (1458)
Q Consensus 246 il~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~--~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd 323 (1458)
+|+++||+|+|+|||||||+|||+|+.+++..+++.. ....|+.++..+|+++++.+++++.|++++++.+.+||+||
T Consensus 144 ~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d 223 (566)
T TIGR00456 144 ILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGD 223 (566)
T ss_pred HHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999976554431 23457888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHHHHHHHHCCCeeecCCCeEEecCCC-CC-CceEE
Q psy15414 324 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDR-GS-IPMTI 398 (1458)
Q Consensus 324 ~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~vv~~L~~kg~~~~~dGa~~~~~~~~-~~-~~~vl 398 (1458)
+++..+|+.++++++++++++|++|||+||. +|||+|++.++++++.|+++|+++++ ||+|++.++. +. .|+||
T Consensus 224 ~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl 302 (566)
T TIGR00456 224 EEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVL 302 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccccCCCCCeEE
Confidence 9999999999999999999999999999984 48899999999999999999999977 9999877543 22 58999
Q ss_pred EecCCccccchhhHHHHHHHhhhcCCCEEEEec--CCchHHHHHHHHHHHHHHcCCCCCCC--ccccccc--cccCCCcc
Q psy15414 399 VKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT--DHRSYHQVLQAIAEEEKKQGISSSSS--SQTKGTA--KKMNVPVR 472 (1458)
Q Consensus 399 ~kSDG~~tY~t~DiA~~~~r~~~~~~d~iIyv~--D~~~~~~~~~a~~~a~~~~g~~~~~~--~~~~G~~--~kmskr~g 472 (1458)
+|||||+||+|+|||||++|+++ +||++|||+ ||++|.+++++++++ +|++.... +..+|.+ .+||||.|
T Consensus 303 ~ksDGt~~Y~t~DiA~~~~k~~~-~~d~iI~V~g~~q~~h~~~v~~~l~~---lG~~~~~~l~h~~~~~V~~~kmSkr~G 378 (566)
T TIGR00456 303 QKSDGTYLYLTRDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQFFAILEK---LGFYKKKELIHLNFGMVPLGSMKTRRG 378 (566)
T ss_pred EECCCCceechhhHHHHHHHHhc-CCCEEEEEecCcHHHHHHHHHHHHHH---cCCCCCCceEEEEEEEEECCCCCccCC
Confidence 99999999999999999999987 999999984 566777888887766 89854332 3345654 49999999
Q ss_pred cccCHHHHHHHHHhhhhhhc
Q psy15414 473 DRMSVRDYLSDVFTHAVQVA 492 (1458)
Q Consensus 473 t~~~l~~~L~ell~dAi~~a 492 (1458)
|.++..+.+.++...+.+..
T Consensus 379 n~V~~~dll~~~~~ra~~~i 398 (566)
T TIGR00456 379 NVISLDNLLDEASKRAGNVI 398 (566)
T ss_pred ceeeHHHHHHHHHHHHHHHH
Confidence 99999988888777665554
No 13
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=8.9e-67 Score=618.25 Aligned_cols=342 Identities=38% Similarity=0.598 Sum_probs=289.8
Q ss_pred HHHHHHcCCCC-CCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHH
Q psy15414 587 IKDIIVNGVQP-PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 665 (1458)
Q Consensus 587 l~~i~~~g~~~-~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~ 665 (1458)
|++++.++..| ...+++++|+||||||||||||||||+||+||||+|+|||+++||+|+++|||||||+||++++.++.
T Consensus 2 i~~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 2 INEILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 56778888887 33578999999999999999999999999999999999999999999999999999999999999886
Q ss_pred hhcCCCCCCCCChhHHHHHHHHhhhccCCc-------HHHHHHHHHHHHHHhcCChhHHHHHHH-HHHHHHHHHHHHHHH
Q psy15414 666 DKFPDYLTKSPPIADLQAFYKESKKRFDED-------EIFKKRAYQCVVALQRFDPDYKKAWEM-ICDVSRRDFQKIYDR 737 (1458)
Q Consensus 666 ~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~-------~~~~~~a~~~~~~le~gd~e~~~lw~~-~~~~s~~~f~~~y~~ 737 (1458)
....+......++.++.++|+..+.....+ +.+.+++++.+.++|+||++..++|+. +++++.+.|..++.+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~ 161 (354)
T PF00750_consen 82 KFGDEELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIR 161 (354)
T ss_dssp HHHHHHTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT--
T ss_pred hhhhhhhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544432233468999999998766543322 348899999999999999999999999 999999888888888
Q ss_pred hCCEEecccccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCCC-CCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCe
Q psy15414 738 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG-SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADW 816 (1458)
Q Consensus 738 L~i~f~~~geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~d-~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~ 816 (1458)
|+++|++ +|+++.+.+.++++.|+++|+++++||++|++.+..+ ..|+||+||||++||+|||||||++|++.+++|+
T Consensus 162 fDv~~~E-~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~~d~ 240 (354)
T PF00750_consen 162 FDVWFDE-SESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEYGFDK 240 (354)
T ss_dssp -SEEEEH-CHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCSS-SE
T ss_pred hCcCccc-chhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhhcccc
Confidence 8888865 6888999999999999999999999999999886431 2568999999999999999999999998899999
Q ss_pred EEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCc-ccccccCCccchHHHHHHHHHHHHHHHhhcCC
Q psy15414 817 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK-KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNR 895 (1458)
Q Consensus 817 iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~-KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~ 895 (1458)
+|||||++|++||+|++++++++|+. +.+.++.|++||+|++++|+ |||||+||+|+++|||+++.++|.+ +.++.+
T Consensus 241 ~iyV~~~~q~~hf~~l~~~l~~lg~~-~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~-~~~~~~ 318 (354)
T PF00750_consen 241 IIYVVGADQKGHFKQLFAILEALGYD-PEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE-IMEKNP 318 (354)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTT-H-HHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH-HHHHHT
T ss_pred EEEEecCchhhHHHHHHHHHHHhCCC-CCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH-HHhccc
Confidence 99999999999999999999999973 34678999999999999997 9999999999999999999999999 766654
Q ss_pred CCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccch
Q psy15414 896 HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 933 (1458)
Q Consensus 896 ~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~ 933 (1458)
+ +++++.+++|+.+|++||||++|+..+.+++.|||
T Consensus 319 ~--~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 319 D--LSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp T--CTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred C--CChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 3 88899999999999999999999999999999998
No 14
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=2.4e-59 Score=554.82 Aligned_cols=289 Identities=34% Similarity=0.509 Sum_probs=236.8
Q ss_pred HHHHHHcCCCC-CCCCCCcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhh
Q psy15414 197 IKDIIVNGVQP-PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 275 (1458)
Q Consensus 197 l~~i~~~g~~~-~~~~~~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 275 (1458)
|.+|+.+|..+ ...+++++|+||||||||||||||||+|||||||+|||||+++||+|+|+|||||||+|||+|+.+++
T Consensus 2 i~~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 2 INEILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 67788888775 45578899999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCCCCCCChhhHHHHHHHhhhhcCCC-------HHHHHHHHHHHHHHhcCChHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15414 276 DKFPDYLTKSPPIADLQAFYKESKKRFDED-------EIFKKRAYQCVVALQRFDPDYKKAWEM-ICDVSRRDFQKIYDR 347 (1458)
Q Consensus 276 ~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~-------~~~~~~a~~~~~~le~gd~~~~~~w~~-~~~~s~~~~~~~y~r 347 (1458)
..+++.....+++.++.++|+..+.....+ +.|.+++++++.++|+||++..++|+. ++++++++|+++|.+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~ 161 (354)
T PF00750_consen 82 KFGDEELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIR 161 (354)
T ss_dssp HHHHHHTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT--
T ss_pred hhhhhhhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554455678999999999877654222 238889999999999999999999999 999999999999999
Q ss_pred hcceecccchhhhhhhHHHHHHHHHHCCCeeecCCCeEEecCCC-CCCceEEEecCCccccchhhHHHHHHHhhhcCCCE
Q psy15414 348 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDR-GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADW 426 (1458)
Q Consensus 348 l~i~f~~~gEs~y~~~~~~vv~~L~~kg~~~~~dGa~~~~~~~~-~~~~~vl~kSDG~~tY~t~DiA~~~~r~~~~~~d~ 426 (1458)
+|++|+| |||+|++.++++++.|+++|+++++|||+|+..++. +..|+||+|||||+||+|+|||||++|++.++||+
T Consensus 162 fDv~~~E-~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~~d~ 240 (354)
T PF00750_consen 162 FDVWFDE-SESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEYGFDK 240 (354)
T ss_dssp -SEEEEH-CHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCSS-SE
T ss_pred hCcCccc-chhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhhcccc
Confidence 9999887 899999999999999999999999999999988743 34688999999999999999999999998899999
Q ss_pred EEEecCCc--hHHHHHHHHHHHHHHcCCCCC-CC--cc-------ccccccccCCCcccccCHHHHHHHHHhhhhh
Q psy15414 427 IVYVTDHR--SYHQVLQAIAEEEKKQGISSS-SS--SQ-------TKGTAKKMNVPVRDRMSVRDYLSDVFTHAVQ 490 (1458)
Q Consensus 427 iIyv~D~~--~~~~~~~a~~~a~~~~g~~~~-~~--~~-------~~G~~~kmskr~gt~~~l~~~L~ell~dAi~ 490 (1458)
+|||+|.. ++.++++++++ .+|+.+. .. ++ ++|+ ++||||.|+.+++.++|+++...|.+
T Consensus 241 ~iyV~~~~q~~hf~~l~~~l~---~lg~~~~~~~~~H~~~g~vl~~~gk-~~mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 241 IIYVVGADQKGHFKQLFAILE---ALGYDPEAVKLQHVSFGVVLLKDGK-VKMSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp EEEEEEGGGHHHHHHHHHHHH---HTT-HHHHCTEEEEEE-EEEETTBE-ESS-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred EEEEecCchhhHHHHHHHHHH---HhCCCCCCCEEEEEEEEEEEcCCCC-ccccCCCCCceEHHHHHHHHHHHHHH
Confidence 99996654 45566666654 4898432 11 23 3455 88999999999999999988888777
No 15
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-55 Score=546.47 Aligned_cols=323 Identities=32% Similarity=0.490 Sum_probs=263.5
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCCCcccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhhhc
Q psy15414 85 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 164 (1458)
Q Consensus 85 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~l~ 164 (1458)
|++++.+.+.+.+++...... ....+.++.|+ +++||||+||+||.|||.+ +++|++||++|++.
T Consensus 3 ~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~---~~~~gd~~~~~a~~lak~~-----~~~p~~ia~~i~~~------ 67 (507)
T PRK01611 3 MDIKELLAEALAAALEAGGLP-ELPAVLIERPK---DPEHGDYATNVAMQLAKKL-----KKNPREIAEEIVEA------ 67 (507)
T ss_pred HHHHHHHHHHHHHHHHhcccc-ccccceeecCC---CCCccCeecHHHHHHHHHc-----CCCHHHHHHHHHhh------
Confidence 456777777777777543211 10122344443 4689999999999999998 78999999999853
Q ss_pred cCCccccchheeeeeCCceeEEeeCHHHHHHHHHHHHHcCCCCC--CCCCCcEEEEEecCCCCCCCccccchhhhhHHHH
Q psy15414 165 TNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP--TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 242 (1458)
Q Consensus 165 ~~~~~~~~i~~vevagpGfIN~~l~~~~~~~~l~~i~~~g~~~~--~~~~~~~V~VEfsSpN~akplHvGHlRstiIGds 242 (1458)
|++++++|||||||+|++.++.+.+..++..|..++ ..+++++|+||||||||+|||||||+||+++||+
T Consensus 68 --------i~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~ 139 (507)
T PRK01611 68 --------IEKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDA 139 (507)
T ss_pred --------eeEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHH
Confidence 589999999999999999999998888876665544 2246789999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcC
Q psy15414 243 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 322 (1458)
Q Consensus 243 laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~g 322 (1458)
|+|+|+++||+|+++||+||||+||++++.++..
T Consensus 140 laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~---------------------------------------------- 173 (507)
T PRK01611 140 LARILEFAGYDVTREYYVNDAGTQIGMLIASLEL---------------------------------------------- 173 (507)
T ss_pred HHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999999876421
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHHHHHHHHCCCee-ecCCCeEEecCCC-CCCceE
Q psy15414 323 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE-LDDGRKIMWGEDR-GSIPMT 397 (1458)
Q Consensus 323 d~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~vv~~L~~kg~~~-~~dGa~~~~~~~~-~~~~~v 397 (1458)
.|+.+++.+.+.|.++|++|||+||. .+++++.+.+.++++.|+++|+++ +++|++|+..+.. +..|+|
T Consensus 174 ------~~~~~~~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~v 247 (507)
T PRK01611 174 ------LWRKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRV 247 (507)
T ss_pred ------HHHHHHHHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeE
Confidence 69999999999999999999999973 355567789999999999999999 9999998766543 234899
Q ss_pred EEecCCccccchhhHHHHHHHhhhcCCCEEEEecCC--chHHHHHHHHHHHHHHcCCCCCC----Cccccc-----cccc
Q psy15414 398 IVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDH--RSYHQVLQAIAEEEKKQGISSSS----SSQTKG-----TAKK 466 (1458)
Q Consensus 398 l~kSDG~~tY~t~DiA~~~~r~~~~~~d~iIyv~D~--~~~~~~~~a~~~a~~~~g~~~~~----~~~~~G-----~~~k 466 (1458)
|+|||||+||+|+|||||++|+++ +|++|||+|. +++.++++++++ .+|+.+.. .++.+| ...|
T Consensus 248 l~ksdG~~~Y~t~Dia~~~~k~~~--~d~~i~V~g~~q~~hf~~~~~~~~---~lg~~~~~~~~~~h~~~glv~~~~g~K 322 (507)
T PRK01611 248 LIKSDGTYTYFTRDIAYHLYKFER--FDRVIYVVGADHHGHFKRLKAALK---ALGYDPDALEVLLHQMVGLVRGGEGVK 322 (507)
T ss_pred EEECCCCccchHHHHHHHHHHHhh--cCEEEEEECCChHHHHHHHHHHHH---HcCCCcccceEEEEEEEEeeECCCCCc
Confidence 999999999999999999999986 9999998655 455566666554 48987542 122233 3459
Q ss_pred cCCCcccccCHHHHHHHHHhh
Q psy15414 467 MNVPVRDRMSVRDYLSDVFTH 487 (1458)
Q Consensus 467 mskr~gt~~~l~~~L~ell~d 487 (1458)
||||.|+.+++.+++++....
T Consensus 323 MSkR~Gn~i~l~dll~~a~g~ 343 (507)
T PRK01611 323 MSTRAGNVVTLDDLLDEAVGR 343 (507)
T ss_pred ccCCCCceeEHHHHHHHHHHH
Confidence 999999999999999984443
No 16
>KOG1195|consensus
Probab=100.00 E-value=9.1e-56 Score=509.14 Aligned_cols=358 Identities=29% Similarity=0.388 Sum_probs=297.3
Q ss_pred ccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhhhccCCccccchheeeeeCCceeEEeeCHH
Q psy15414 112 SVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRV 191 (1458)
Q Consensus 112 ~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~l~~~~~~~~~i~~vevagpGfIN~~l~~~ 191 (1458)
..+.++. ++-||...+ |-+. +-.|.+.|.++++.+ +.+ ..++++...|| |++|+|++.
T Consensus 27 ~le~~~~---~~r~~~~~~----lp~i------~~~~~~~a~~~~e~~----~~~----~~v~~~~~~~~-~~~f~ln~~ 84 (567)
T KOG1195|consen 27 ALEQSNS---MDRPDLLLP----LPRI------RVQGKEDALRWAEAL----PCN----RIVEEVGASGP-FVQFFLNRR 84 (567)
T ss_pred HHHhhcc---CCCCCcccc----Cccc------ccCCHHHHHHHHHhc----ccc----cchHHHhcCCC-eEEEEecHH
Confidence 3444443 355665543 3433 334558888888765 332 46889887775 999999998
Q ss_pred HHHH-HHHHHHHcCCCCC--CCCCCcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHH
Q psy15414 192 YAGE-QIKDIIVNGVQPP--TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 268 (1458)
Q Consensus 192 ~~~~-~l~~i~~~g~~~~--~~~~~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~ 268 (1458)
++.. ++..|..++..++ ..+++++|+|||||||+||||||||+||||||..++|+.+.+||+|+|.||+||||+|||
T Consensus 85 ~~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFg 164 (567)
T KOG1195|consen 85 RLIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFG 164 (567)
T ss_pred HHHHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhh
Confidence 7765 5666766665544 456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCCChhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15414 269 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 348 (1458)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl 348 (1458)
+++.+++...+|..-...||.+|.+.|+++++..+.+++..+.|++.+..||.||.++.++|++|++.|+..+.++|+||
T Consensus 165 ll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl 244 (567)
T KOG1195|consen 165 LLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRL 244 (567)
T ss_pred HHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 99999876555555566799999999999999888877777899999999999999999999999999999999999999
Q ss_pred cceecc-cchh-hhhhhHHHHHHHHHHCCCeeecCCCeEEecCCCC--CCceEEEecCCccccchhhHHHHHHHhhhcCC
Q psy15414 349 NVTLTE-RGES-FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG--SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKA 424 (1458)
Q Consensus 349 ~i~f~~-~gEs-~y~~~~~~vv~~L~~kg~~~~~dGa~~~~~~~~~--~~~~vl~kSDG~~tY~t~DiA~~~~r~~~~~~ 424 (1458)
||+||+ .||| ++++.+..+++.+++.|++.+.||+.|+.+.+.+ ..-.+|+|||||++|.|||||+++.|.++|.|
T Consensus 245 ~v~FD~y~gESqv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~f 324 (567)
T KOG1195|consen 245 NVKFDEYSGESQVSNEKMQEALDLLRSANLTEEIDGTIVIDLSKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSF 324 (567)
T ss_pred ceeeeeccchHHHHHHHHHHHHHHHHhcCCcccCCCcEEEEecccCcccceEEEEcCCCceehHHHHHHHHHHHHHhcCc
Confidence 999996 7999 6679999999999999999999999998876433 23477999999999999999999999999999
Q ss_pred CEEEEecCCchHHHHHHHHHHHHHHcCCCCCCC--ccccccccccCCCcccccCHHHHHHHHHhhhhhhc
Q psy15414 425 DWIVYVTDHRSYHQVLQAIAEEEKKQGISSSSS--SQTKGTAKKMNVPVRDRMSVRDYLSDVFTHAVQVA 492 (1458)
Q Consensus 425 d~iIyv~D~~~~~~~~~a~~~a~~~~g~~~~~~--~~~~G~~~kmskr~gt~~~l~~~L~ell~dAi~~a 492 (1458)
|++|||+|.+| -++|.+.++..+++|+.+... ++.+|.+--||+|.|..+-+.+.+.+.=..+.+.+
T Consensus 325 dr~iYVvd~~Q-~~hf~~lf~ilk~mg~~~a~~~qHV~~G~v~GmsTRkG~~~fl~dil~e~re~m~e~M 393 (567)
T KOG1195|consen 325 DRLIYVVDSQQ-KDHFCQLFEILKKMGFDWAKKLQHVNFGRVQGMSTRKGKVVFLDDILEEAREQMLEVM 393 (567)
T ss_pred ceEEEEechHH-HHHHHHHHHHHHHhCchhhhhcceecccccccccccCCceeeHHHHHHHHHHHHHHHH
Confidence 99999999987 355777777778899886444 55799988999999999777666665544444443
No 17
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=2e-45 Score=407.47 Aligned_cols=210 Identities=36% Similarity=0.555 Sum_probs=190.3
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
+|+||||||||+||+||||+||+++||+|+|+|+++||+|+++||+||||.||+.++...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-------------------- 60 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-------------------- 60 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH--------------------
Confidence 589999999999999999999999999999999999999999999999999998755322
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEe-cccccccchhHHHHHHHHHH
Q psy15414 685 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT-ERGESFYQKHMEQLVPYLEK 763 (1458)
Q Consensus 685 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~-~~geS~~~~~v~~vi~~L~~ 763 (1458)
..|+.+++.+++.|.++|++|||+|+ +.+||.+.+.+.++++.|++
T Consensus 61 ---------------------------------~~~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~~ 107 (212)
T cd00671 61 ---------------------------------EKWRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLEE 107 (212)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHHH
Confidence 11888999999999999999999885 34678888899999999999
Q ss_pred cCCeEeeCCcEEEEcCCC-CCCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCC
Q psy15414 764 KGLLELDDGRKIMWGEDR-GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGIL 842 (1458)
Q Consensus 764 kG~~ye~dGa~~~~~d~~-d~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~ 842 (1458)
+|++|+.+|++|+.++.. +..++||+||||++||.|+|||||++|+. +++|++|||+|++|..||++++++++++|+.
T Consensus 108 ~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~ 186 (212)
T cd00671 108 LGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALELLGYD 186 (212)
T ss_pred CCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999877543 22469999999999999999999999997 8999999999999999999999999999984
Q ss_pred CCCcceEEEEEeEEEecCCCcccccccC
Q psy15414 843 NPNKTRMDFVGFGVVLGEDRKKFKTRSG 870 (1458)
Q Consensus 843 ~~~~~~~~H~~fg~V~~~~G~KMSKR~G 870 (1458)
...++.|+.||+|++.+|+|||||.|
T Consensus 187 --~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 187 --EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred --CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 34689999999999988999999998
No 18
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=6.1e-42 Score=379.58 Aligned_cols=201 Identities=36% Similarity=0.532 Sum_probs=172.9
Q ss_pred EEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHH
Q psy15414 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 294 (1458)
Q Consensus 215 ~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~ 294 (1458)
+|+||||||||+||+||||+||+|+||+|+|+|+++||+|+++||+||||+||++++.+...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~------------------ 62 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK------------------ 62 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH------------------
Confidence 58999999999999999999999999999999999999999999999999999998865421
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceec-ccchhhhhhhHHHHHHHHHH
Q psy15414 295 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT-ERGESFYQKHMEQLVPYLEK 373 (1458)
Q Consensus 295 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~-~~gEs~y~~~~~~vv~~L~~ 373 (1458)
|+.+++.+.+.|.++|++|||+|| +.+||.+.+.+.++++.|.+
T Consensus 63 -----------------------------------~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~~ 107 (212)
T cd00671 63 -----------------------------------WRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLEE 107 (212)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHHH
Confidence 999999999999999999999998 46899998899999999999
Q ss_pred CCCeeecCCCeEEecCCC-CCCceEEEecCCccccchhhHHHHHHHhhhcCCCEEEEecCC--chHHHHHHHHHHHHHHc
Q psy15414 374 KGLLELDDGRKIMWGEDR-GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDH--RSYHQVLQAIAEEEKKQ 450 (1458)
Q Consensus 374 kg~~~~~dGa~~~~~~~~-~~~~~vl~kSDG~~tY~t~DiA~~~~r~~~~~~d~iIyv~D~--~~~~~~~~a~~~a~~~~ 450 (1458)
+|++++.+|++|...++. +..++||+||||++||.|+|||||++|++ +++|++|||+|. .++.+++++++++ +
T Consensus 108 ~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~~~~~~~~---l 183 (212)
T cd00671 108 LGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALEL---L 183 (212)
T ss_pred CCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHHHHHHHHH---c
Confidence 999999999988766543 34589999999999999999999999998 799999998654 4555667766655 8
Q ss_pred CCCCCCC--ccccccc-----cccCCCcc
Q psy15414 451 GISSSSS--SQTKGTA-----KKMNVPVR 472 (1458)
Q Consensus 451 g~~~~~~--~~~~G~~-----~kmskr~g 472 (1458)
|+.+... ++.+|.+ .|||||.|
T Consensus 184 g~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 184 GYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 9862222 3333432 38999987
No 19
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=5.1e-37 Score=385.74 Aligned_cols=372 Identities=14% Similarity=0.148 Sum_probs=282.4
Q ss_pred HHHcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHH-HcCCcEEEEeecCCchhHHHHHHHHHHhhc
Q psy15414 590 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLE-YLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 668 (1458)
Q Consensus 590 i~~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~-~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~ 668 (1458)
+.+..+.|.+. .+++|.++.|+|++|++.||||+|++|..|+|+|+|+ +.||+|..+.+|+|+|..|-.
T Consensus 46 lt~~k~~f~p~-~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~--------- 115 (651)
T PTZ00399 46 LTGGKVEFVPQ-NGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIK--------- 115 (651)
T ss_pred CCCCccccccC-CCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHH---------
Confidence 33445566443 5778999999999999999999999999999999999 999999999999999854421
Q ss_pred CCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE---Eecc
Q psy15414 669 PDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT---LTER 745 (1458)
Q Consensus 669 ~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~---f~~~ 745 (1458)
++.+ +| +.+|..+++.+...|.+++++|||. +.++
T Consensus 116 ------------------~A~~--------------------~g----~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r 153 (651)
T PTZ00399 116 ------------------RARE--------------------EK----LSIFLELARKWEKEFFEDMKALNVRPPDVITR 153 (651)
T ss_pred ------------------HHHH--------------------hC----CCcHHHHHHHHHHHHHHHHHHcCCCCCccccC
Confidence 1111 11 1224557778889999999999994 4445
Q ss_pred cccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCCC----------------------C--------------CCcEEE
Q psy15414 746 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG----------------------S--------------IPMTIV 789 (1458)
Q Consensus 746 geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~d----------------------~--------------~~~vL~ 789 (1458)
.|.|++.|.++|+.|.++|++|+.+|.++|++.... + .+++||
T Consensus 154 -~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLW 232 (651)
T PTZ00399 154 -VSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALW 232 (651)
T ss_pred -cCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhh
Confidence 588999999999999999999999999988653210 0 123455
Q ss_pred cC--CCCccCCCcc----hHHHHHHh--hhcCCCeEEEEeeCCccccHHHHH-HHHHH---cCCCCCCcceEEEEEeEEE
Q psy15414 790 KS--DGGFTYDTSD----LAAIRQRI--EEEKADWIVYVTDLGQGVHFRLLE-ECAKK---AGILNPNKTRMDFVGFGVV 857 (1458)
Q Consensus 790 ks--DGt~tY~trD----iA~~~~k~--~~~~~d~iIyVvg~dq~~hf~~l~-~il~a---lG~~~~~~~~~~H~~fg~V 857 (1458)
|. .|.|.|.++. .+||..-. ...-++..++||+++.++.||+|. .+++. .| ..+++.+|+|++| |
T Consensus 233 k~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~-~~~~v~y~~H~G~--L 309 (651)
T PTZ00399 233 KASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFD-KHQWVNYFLHSGH--L 309 (651)
T ss_pred CCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhC-CCCCCcEEEEEEE--E
Confidence 43 3445555442 23332210 000123478999999999999997 45553 34 2468899999999 3
Q ss_pred ecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHH
Q psy15414 858 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 937 (1458)
Q Consensus 858 ~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l 937 (1458)
+ .+|+|||||+||+|+++|+|++++ .+++||++|+.+++++++||++.+.
T Consensus 310 ~-i~G~KMSKSLGNfItp~dlLekyg-----------------------------aDaLR~~lLs~~~~~dldFS~e~l~ 359 (651)
T PTZ00399 310 H-IKGLKMSKSLKNFITIRQALSKYT-----------------------------ARQIRLLFLLHKWDKPMNYSDESMD 359 (651)
T ss_pred E-eccchhhhcCCCcccHHHHHHHcC-----------------------------hHHHHHHHHhcCCCCCCccCHHHHH
Confidence 3 378899999999999999999864 2469999999999999999999988
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Q psy15414 938 DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT-RDLCLHHLCEYLYD 1016 (1458)
Q Consensus 938 ~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~-~~~~p~~l~~yL~~ 1016 (1458)
+..+....|.+| ++|+++++++.... . ...+ .+.++.|+..+..+++.+.+++ ++++++.++.+|++
T Consensus 360 ~a~~~~~~l~n~-~~rl~s~l~~~~~~-----~-----~~~~-~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~e 427 (651)
T PTZ00399 360 EAIEKDKVFFNF-FANVKIKLRESELT-----S-----PQKW-TQHDFELNELFEETKSAVHAALLDNFDTPEALQALQK 427 (651)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhcccc-----c-----cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 865555567766 88999988764211 0 1112 3567889999999999999999 67999999999999
Q ss_pred HHHHHHhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhH
Q psy15414 1017 ISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEE 1073 (1458)
Q Consensus 1017 LA~~fN~fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~ 1073 (1458)
|++.+|.||+.. ...|+.++.++..+|.++|.+|||.+++.|.
T Consensus 428 Lv~~~N~yi~~~--------------~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m~ 470 (651)
T PTZ00399 428 LISATNTYLNSG--------------EQPSAPLLRSVAQYVTKILSIFGLVEGSDGL 470 (651)
T ss_pred HHHHHHHHHhcc--------------ccchHHHHHHHHHHHHHHHhcccCCcchhhc
Confidence 999999999621 1245778899999999999999998887764
No 20
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=2.7e-34 Score=350.82 Aligned_cols=367 Identities=13% Similarity=0.066 Sum_probs=264.5
Q ss_pred HHHcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcC
Q psy15414 590 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFP 669 (1458)
Q Consensus 590 i~~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~ 669 (1458)
+.+..+.|.+. .+++|.++.|+|+|++++||||+|+.|..|+|+|+|++.||+|..+.+++|+|..|-.-+
T Consensus 66 ltr~ke~f~P~-~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A-------- 136 (557)
T PLN02946 66 MSRKKELFKPK-VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARA-------- 136 (557)
T ss_pred CCCCeeccccC-CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHH--------
Confidence 33444556443 567899999999999999999999999999999999999999999999999987553211
Q ss_pred CCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE--Eecccc
Q psy15414 670 DYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT--LTERGE 747 (1458)
Q Consensus 670 ~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~--f~~~ge 747 (1458)
. +.|- -|+.+++.+.+.|.+++++|||. +.....
T Consensus 137 -------------------~--------------------~~g~-----~~~ela~~y~~~f~~d~~~LnI~~p~~~pra 172 (557)
T PLN02946 137 -------------------N--------------------ELGE-----DPISLSRRYCEEFLSDMAYLHCLPPSVEPRV 172 (557)
T ss_pred -------------------H--------------------HcCC-----CHHHHHHHHHHHHHHHHHHCCCCCCCeecCc
Confidence 1 0110 03456777889999999999995 222236
Q ss_pred cccchhHHHHHHHHHHcCCeEeeCCcEEEEcCC--------------------------CCC-CCcEEEcC--CCCccCC
Q psy15414 748 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED--------------------------RGS-IPMTIVKS--DGGFTYD 798 (1458)
Q Consensus 748 S~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~--------------------------~d~-~~~vL~ks--DGt~tY~ 798 (1458)
|.|++.|.++|+.|.++|++|+.+|.+|+.+.. |.. .+++|||. .|.+.|-
T Consensus 173 tehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~ 252 (557)
T PLN02946 173 SDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWD 252 (557)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCcc
Confidence 889999999999999999999999998875421 101 35899985 5667777
Q ss_pred Ccc----hHHHHHHhh--hcCCCeEEEEeeCCccccHHHHH-HHHH--H-cCCCCCCcceEEEEEeEEEecCCCcccccc
Q psy15414 799 TSD----LAAIRQRIE--EEKADWIVYVTDLGQGVHFRLLE-ECAK--K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTR 868 (1458)
Q Consensus 799 trD----iA~~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~-~il~--a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR 868 (1458)
+++ .+||+.--. ..-++..++|||++.++.|||++ .+++ + .| .+++.+|+|++| |+ .+|+|||||
T Consensus 253 SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g--~~~a~yW~H~G~--v~-~~G~KMSKS 327 (557)
T PLN02946 253 SPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACC--DSNISYWIHNGF--VT-VDSEKMSKS 327 (557)
T ss_pred CCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhC--CCCCceeeEeeE--EE-eCCCCcCCc
Confidence 765 566654311 11245689999999999999998 3444 3 35 357889999877 44 388999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHH
Q psy15414 869 SGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 948 (1458)
Q Consensus 869 ~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylq 948 (1458)
+||+++++|++++++ -+++||++|+.+++++++|+++.+... .+.-.|++
T Consensus 328 lGN~itl~dll~~y~-----------------------------~dalR~~lLs~hyr~~l~fs~e~L~~a-~~~l~~l~ 377 (557)
T PLN02946 328 LGNFFTIRQVIDLYH-----------------------------PLALRLFLLGTHYRSPINYSDVQLESA-SERIFYIY 377 (557)
T ss_pred CCCcCCHHHHHHhcC-----------------------------ccceeeeeeccCCCCCcEecHHHHHHH-HHHHHHHH
Confidence 999999999999763 146999999999999999999986554 34456899
Q ss_pred HHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhhhhh
Q psy15414 949 YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFSEFYDN 1027 (1458)
Q Consensus 949 Ya~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN~fy~~ 1027 (1458)
|+++|+++++++..... .. .. . ...+...+..+.+.+.++++ +++...++..|+++++.+|++.+.
T Consensus 378 ~~~~~~~~~l~~~~~~~---~~------~~--~--~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~ 444 (557)
T PLN02946 378 QTLHDCEESLQQHDSTF---EK------DS--V--PPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHT 444 (557)
T ss_pred HHHHHHHHHhhhhcccc---cc------cc--c--chhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhh
Confidence 99999999887532110 00 00 0 01112233445566666665 589899999999999999998754
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccc
Q psy15414 1028 CYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1067 (1458)
Q Consensus 1028 ~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~ 1067 (1458)
.. ... ...++..+.++...+...+.+|||.
T Consensus 445 ~~--~~~--------~~~~~~~l~~~~~~~~~~~~vLGl~ 474 (557)
T PLN02946 445 RK--GKK--------QEKRLESLAALEKKIRDVLSVLGLM 474 (557)
T ss_pred cc--ccc--------ccchHHHHHHHHHHHHHHHHHcCCC
Confidence 21 000 0111222344555566677889983
No 21
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-34 Score=340.59 Aligned_cols=327 Identities=17% Similarity=0.202 Sum_probs=242.8
Q ss_pred HHHHcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhc
Q psy15414 589 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 668 (1458)
Q Consensus 589 ~i~~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~ 668 (1458)
++.+..+.|.+. .+.+|.||.|+|+|+...||||+|+.|.+|+|+|+|++.||.|..+.+|+|.--
T Consensus 7 Tltr~ke~F~P~-~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDD------------- 72 (464)
T COG0215 7 TLTRQKEEFVPI-DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDD------------- 72 (464)
T ss_pred cCccceecccCC-CCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccH-------------
Confidence 344555667655 455699999999999999999999999999999999999999999999999632
Q ss_pred CCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCC---EEecc
Q psy15414 669 PDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV---TLTER 745 (1458)
Q Consensus 669 ~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i---~f~~~ 745 (1458)
+|..++.+ +|- -|+.+++.++++|.++++.||| +++++
T Consensus 73 --------------KIi~rA~~--------------------~g~-----~~~ev~~~~i~~f~~D~~aL~v~~p~~~Pr 113 (464)
T COG0215 73 --------------KIINRARE--------------------EGL-----SIREVAERYIAAFFEDMDALNVLPPDIEPR 113 (464)
T ss_pred --------------HHHHHHHH--------------------hCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcccCc
Confidence 33333221 221 2667888899999999999999 35665
Q ss_pred cccccchhHHHHHHHHHHcCCeEee-CCcEEEEcCC---------C-------------------CCCCcEEEcC--CCC
Q psy15414 746 GESFYQKHMEQLVPYLEKKGLLELD-DGRKIMWGED---------R-------------------GSIPMTIVKS--DGG 794 (1458)
Q Consensus 746 geS~~~~~v~~vi~~L~~kG~~ye~-dGa~~~~~d~---------~-------------------d~~~~vL~ks--DGt 794 (1458)
.|.|++.|.++|++|+++|++|+. +|.++|.+.. . +..+++|||+ .|.
T Consensus 114 -aTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gE 192 (464)
T COG0215 114 -ATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGE 192 (464)
T ss_pred -HhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCchhheeeccCCCCC
Confidence 789999999999999999999998 7899885421 1 0135899985 577
Q ss_pred ccCCCcc----hHHHHHHh--hhcCCCeEEEEeeCCccccHHHHH-HHHHH---cCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 795 FTYDTSD----LAAIRQRI--EEEKADWIVYVTDLGQGVHFRLLE-ECAKK---AGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 795 ~tY~trD----iA~~~~k~--~~~~~d~iIyVvg~dq~~hf~~l~-~il~a---lG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
|.|-+++ .+||+.-. ...-++..++|||++.++-|||++ .+++. .| ..+++.+|+|++|-+| +|+|
T Consensus 193 p~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g-~~~~a~yWmH~G~l~i---~geK 268 (464)
T COG0215 193 PSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATG-VKPFAKYWMHNGFLNI---DGEK 268 (464)
T ss_pred CCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhC-CCcceeEeEEcceeee---cCcC
Confidence 7777765 56665431 112356789999999999999998 56663 34 2468999999999554 8899
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcH
Q psy15414 865 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 944 (1458)
Q Consensus 865 MSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g 944 (1458)
||||+|||+++.|+++++. | ..|||++|+.+++++++||.+.+.+..
T Consensus 269 MSKSLGNfiti~d~l~~~~-----------------p------------~~lR~~lls~HYR~pl~fsee~L~~A~---- 315 (464)
T COG0215 269 MSKSLGNFITVRDLLKKYD-----------------P------------EVLRLFLLSSHYRSPLDFSEELLEEAK---- 315 (464)
T ss_pred cccccCCeeEHHHHHhhcC-----------------H------------HHHHHHHHHHHhCCccccCHHHHHHHH----
Confidence 9999999999999999863 2 248999999999999999999877652
Q ss_pred HHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHh
Q psy15414 945 VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFSE 1023 (1458)
Q Consensus 945 ~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN~ 1023 (1458)
.++.|+...+++...... .... . ....+...+..+++ +++...++..|+++++..|.
T Consensus 316 ----~~l~rl~~~~~~~~~~~~---------~~~~--~-------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~ 373 (464)
T COG0215 316 ----KALERLYNALRRLRDLAG---------DAEL--A-------DLKEFEARFREALDDDFNTPKALAVLFELAKEINR 373 (464)
T ss_pred ----HHHHHHHHHHHHHHhhcc---------cccc--c-------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh
Confidence 233455555554311100 0000 0 23334444555554 58888999999999999877
Q ss_pred hhhhc
Q psy15414 1024 FYDNC 1028 (1458)
Q Consensus 1024 fy~~~ 1028 (1458)
..+.+
T Consensus 374 ~~~~~ 378 (464)
T COG0215 374 LLEEG 378 (464)
T ss_pred hhhcc
Confidence 65544
No 22
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.98 E-value=1.2e-30 Score=319.87 Aligned_cols=344 Identities=17% Similarity=0.189 Sum_probs=254.2
Q ss_pred CCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCC
Q psy15414 594 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 673 (1458)
Q Consensus 594 g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~ 673 (1458)
.+.|.+. .+++|.++.|+|+|++++||||+|+.++.|+|+|+|+..||+|..+.+++|+|..+..-+
T Consensus 13 ~~~f~p~-~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A------------ 79 (463)
T PRK00260 13 KEEFKPL-EPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRA------------ 79 (463)
T ss_pred eeecccC-CCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHH------------
Confidence 3444332 457899999999999999999999999999999999999999999999999986553211
Q ss_pred CCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE-Eec-ccccccc
Q psy15414 674 KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE-RGESFYQ 751 (1458)
Q Consensus 674 ~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~-f~~-~geS~~~ 751 (1458)
. +.|. -|+.+++.+.+.|.++|++|||. .+. ...|.|.
T Consensus 80 ---------------~--------------------~~g~-----~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~ 119 (463)
T PRK00260 80 ---------------N--------------------EEGE-----SIKELTERYIAAFHEDMDALNVLPPDIEPRATEHI 119 (463)
T ss_pred ---------------H--------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCccccccccH
Confidence 0 1111 25667888999999999999994 332 2356788
Q ss_pred hhHHHHHHHHHHcCCeEeeCCcEEEEcCC--------------------------CCC-CCcEEEcC--CCCccCCCcc-
Q psy15414 752 KHMEQLVPYLEKKGLLELDDGRKIMWGED--------------------------RGS-IPMTIVKS--DGGFTYDTSD- 801 (1458)
Q Consensus 752 ~~v~~vi~~L~~kG~~ye~dGa~~~~~d~--------------------------~d~-~~~vL~ks--DGt~tY~trD- 801 (1458)
+.+.+++++|.++|++|+.+|.+++++.. |.. .+++|||. .|.+.|.++.
T Consensus 120 ~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g 199 (463)
T PRK00260 120 PEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWG 199 (463)
T ss_pred HHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCC
Confidence 99999999999999999999998875421 100 35789986 4666666553
Q ss_pred ---hHHHHHHh--hhcCCCeEEEEeeCCccccHHHHH-HHHH--H-cCCCCCCcceEEEEEeEEEecCCCcccccccCCc
Q psy15414 802 ---LAAIRQRI--EEEKADWIVYVTDLGQGVHFRLLE-ECAK--K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDT 872 (1458)
Q Consensus 802 ---iA~~~~k~--~~~~~d~iIyVvg~dq~~hf~~l~-~il~--a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gnv 872 (1458)
+++|+... ...-++..++|++++.++.||++. .+++ + .| .|++..|+|.++ |. .+|+|||||+||+
T Consensus 200 ~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g--~p~~~~w~H~g~--v~-~~G~KMSKS~GN~ 274 (463)
T PRK00260 200 KGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATG--KPFANYWMHNGF--VT-VNGEKMSKSLGNF 274 (463)
T ss_pred CCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhcC--CCcceEEEEccE--Ec-cCCCcccCcCCCC
Confidence 45555431 112345689999999999999997 4555 2 46 468889999998 33 4889999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHH
Q psy15414 873 VKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 952 (1458)
Q Consensus 873 I~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~a 952 (1458)
|++.|++++++ -+++||++|+.+++++++|+++.+.+. +..+.
T Consensus 275 i~~~dll~~~~-----------------------------~d~lR~~ll~~~~~~~~~fs~~~l~~a--------~~~~~ 317 (463)
T PRK00260 275 FTIRDLLKKYD-----------------------------PEVLRFFLLSAHYRSPLNFSEEALEQA--------KKALE 317 (463)
T ss_pred CCHHHHHHHcC-----------------------------chHhHHHHHhCCCCCCCccCHHHHHHH--------HHHHH
Confidence 99999999863 136999999999999999999986544 33445
Q ss_pred HHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhhhhhcccc
Q psy15414 953 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFSEFYDNCYCI 1031 (1458)
Q Consensus 953 Ri~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN~fy~~~~vL 1031 (1458)
|+.+.++..... +.+..+...+..+.+.+.++++ +++.+.++..|+++++.+|.+.+...
T Consensus 318 rl~~~~~~~~~~-----------------~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~~~-- 378 (463)
T PRK00260 318 RLYNALAETALG-----------------EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALETKD-- 378 (463)
T ss_pred HHHHHHHHhhhc-----------------cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccc--
Confidence 666666553100 0112344556677788888885 79999999999999999999875431
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhhhccc
Q psy15414 1032 EKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066 (1458)
Q Consensus 1032 ~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI 1066 (1458)
. . .+..+...|...+.+|||
T Consensus 379 ---~-------~-----~~~~~~~~~~~~~~ilG~ 398 (463)
T PRK00260 379 ---K-------E-----AAAALAALLRALADVLGL 398 (463)
T ss_pred ---H-------H-----HHHHHHHHHHHHHHhcCC
Confidence 0 1 113344556667889998
No 23
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.3e-30 Score=316.03 Aligned_cols=347 Identities=16% Similarity=0.128 Sum_probs=234.0
Q ss_pred HcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCC
Q psy15414 592 VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 671 (1458)
Q Consensus 592 ~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~ 671 (1458)
+..+.|.+. .+++|.+|.|+|+|++++||||+|+.|..|+|+|+|++.||+|..+.+|+|+|+..+- .++
T Consensus 11 ~~ke~f~p~-~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~---------~De 80 (490)
T PRK14536 11 RQQEEFQPI-EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDD---------ADS 80 (490)
T ss_pred CCeeccccC-CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccC---------CcC
Confidence 344555443 4668999999999999999999999999999999999999999999999999865541 011
Q ss_pred CCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEE---eccccc
Q psy15414 672 LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL---TERGES 748 (1458)
Q Consensus 672 ~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f---~~~geS 748 (1458)
+ + +++..++. +.|-. |+.+++.+.+.|.+.+++|||.+ .++ .+
T Consensus 81 -~-d------dKii~~A~--------------------~~g~~-----~~e~a~~~~~~f~~d~~~Lni~~~~~~~r-at 126 (490)
T PRK14536 81 -G-E------DKMVKSAQ--------------------EHGKS-----VLEIAAHYTAAFFRDTARLNIERPSIVCN-AT 126 (490)
T ss_pred -C-C------hHHHHHHH--------------------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCceecC-cc
Confidence 1 1 12322221 12211 45678889999999999999954 444 58
Q ss_pred ccchhHHHHHHHHHHcCCeEeeCCcEEEEcCC--------------------------CCC-CCcEEEcC----CC-Ccc
Q psy15414 749 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGED--------------------------RGS-IPMTIVKS----DG-GFT 796 (1458)
Q Consensus 749 ~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~--------------------------~d~-~~~vL~ks----DG-t~t 796 (1458)
.|++.+.++++.|.++|++|+.+|.+|+.+.. |.. .+++|||. .| .++
T Consensus 127 ~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~ 206 (490)
T PRK14536 127 EHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALT 206 (490)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCc
Confidence 89999999999999999999999998875421 000 35788864 22 356
Q ss_pred CCCcc----hHHHHHHhh--hcCCCeEEEEeeCCccccHHHHH-HHHH--Hc-CCCCCCcceEEEEEeEEEecCCCcccc
Q psy15414 797 YDTSD----LAAIRQRIE--EEKADWIVYVTDLGQGVHFRLLE-ECAK--KA-GILNPNKTRMDFVGFGVVLGEDRKKFK 866 (1458)
Q Consensus 797 Y~trD----iA~~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~-~il~--al-G~~~~~~~~~~H~~fg~V~~~~G~KMS 866 (1458)
|-+++ .+||+.-.. ..-++..++|||++.++.|||++ .+++ ++ | .+++..|+|.+|-.+ +|+|||
T Consensus 207 W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g--~~~~~~w~h~g~l~~---~g~KMS 281 (490)
T PRK14536 207 WDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATG--KPWVRYWLHHEFLLM---NKGKMS 281 (490)
T ss_pred ccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcC--CCcceEEEEcCEEee---cCcccc
Confidence 66654 345543211 11234567999999999999998 3444 33 4 368899999999433 788999
Q ss_pred cccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHH
Q psy15414 867 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 946 (1458)
Q Consensus 867 KR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~y 946 (1458)
||+||+|+++||+++.. ++ +++||++|+.+++++++||++.+.+.... -..
T Consensus 282 KSlGN~itl~dll~~g~----------------~~------------~alR~~lls~~yr~~l~Fs~e~l~~a~~~-~~r 332 (490)
T PRK14536 282 KSAGQFLTLSSLQEKGF----------------QP------------LDYRFFLLGGHYRSQLAFSWEALKTAKAA-RRS 332 (490)
T ss_pred ccCCCcccHHHHHhcCC----------------CH------------HHHHHHHHhCCCCCCCCCCHHHHHHHHHH-HHH
Confidence 99999999999999631 11 36999999999999999999998875322 223
Q ss_pred HHHHHHHHHHHHHHhCCC-cchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHh
Q psy15414 947 LLYAYTRIASIARTAGIN-SEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFSE 1023 (1458)
Q Consensus 947 lqYa~aRi~SIlrK~~~~-~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN~ 1023 (1458)
++.++.++.......... ...... ........+ +...+..+.+.+.+|++ +++...++..|+++++..|.
T Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 333 LVRRVARVVDAARATTGSVRGTLAE---CAAERVAES----RASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSV 404 (490)
T ss_pred HHHHHHHHHHhhhcccccccccccc---cccccccch----hhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Confidence 333333432211100000 000000 000000000 11123345555666655 58888999999999998885
No 24
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=2.4e-30 Score=312.05 Aligned_cols=327 Identities=17% Similarity=0.103 Sum_probs=229.8
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
++|.|+.|+|+|+.++||||+|+.|..|+|+|+|++.||+|..+.+|+|+|+..+. .++ + + ++
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~---------~D~-g-d------dK 82 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGD---------FDD-G-E------DK 82 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCC---------ccC-C-C------cH
Confidence 58999999999999999999999999999999999999999999999999975542 111 1 1 12
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE---EecccccccchhHHHHHHH
Q psy15414 684 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT---LTERGESFYQKHMEQLVPY 760 (1458)
Q Consensus 684 iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~---f~~~geS~~~~~v~~vi~~ 760 (1458)
+..++. ++|-+ |+.+++.+.+.|.+.+++|||. +.++ .+.|++.++++++.
T Consensus 83 Ii~~A~--------------------~~g~~-----~~e~a~~~~~~f~~d~~~Lni~~~~~~p~-atehi~~~i~~i~~ 136 (481)
T PRK14534 83 VVKAAR--------------------ERGLT-----VYEISRFFTEAFFDDCKKLNIVYPDKVLV-ASEYIPIMIEVVKV 136 (481)
T ss_pred HHHHHH--------------------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCceecC-ccchHHHHHHHHHH
Confidence 322221 22211 4567888999999999999995 4454 68899999999999
Q ss_pred HHHcCCeEeeCCcEEEEcCC----------------------------CC-CCCcEEEc-----CCCCccCCCcc----h
Q psy15414 761 LEKKGLLELDDGRKIMWGED----------------------------RG-SIPMTIVK-----SDGGFTYDTSD----L 802 (1458)
Q Consensus 761 L~~kG~~ye~dGa~~~~~d~----------------------------~d-~~~~vL~k-----sDGt~tY~trD----i 802 (1458)
|.++|++|+.+|.+++.+.. |. ..+++||| .+|.++|-+++ +
T Consensus 137 L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrP 216 (481)
T PRK14534 137 LEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYP 216 (481)
T ss_pred HHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCC
Confidence 99999999999998875421 00 03578997 36778887765 5
Q ss_pred HHHHHHhh--hcCCCeEEEEeeCCccccHHHHH-HHHH--H-cCCCCCCcceEEEEEeEEEecCCCcccccccCCccchH
Q psy15414 803 AAIRQRIE--EEKADWIVYVTDLGQGVHFRLLE-ECAK--K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 876 (1458)
Q Consensus 803 A~~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~-~il~--a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~ 876 (1458)
++|+.-.. ...+...++|||++.++.|||++ .+++ + .|. +++..|+|.+|-.+ +|+|||||+||+++++
T Consensus 217 gWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g~--~~~~~W~H~g~l~~---~g~KMSKSlGN~i~l~ 291 (481)
T PRK14534 217 SWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLNK--KWCDMFVHGEFLIM---EYEKMSKSNNNFITIK 291 (481)
T ss_pred cHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhhhcCC--CcceEEEEecEEEe---cCceecccCCCcccHH
Confidence 66654311 11245679999999999999998 3444 3 343 57889999999443 7889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHH
Q psy15414 877 ELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIAS 956 (1458)
Q Consensus 877 DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~S 956 (1458)
||+++.. ++ +++||++|+.+++++++||++.+.+.. .++.|+..
T Consensus 292 dll~~~~----------------~~------------~alR~~lls~~yr~~l~Fs~e~l~~a~--------~~~~~~~~ 335 (481)
T PRK14534 292 DLEDQGF----------------SP------------LDFRYFCLTAHYRTQLKFTFNNLKACK--------IARENMLN 335 (481)
T ss_pred HHHhcCC----------------Ch------------hHHHHHHHhCCCCCCCCCCHHHHHHHH--------HHHHHHHH
Confidence 9998631 11 369999999999999999999988752 12222222
Q ss_pred HHHHh----CCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhh
Q psy15414 957 IARTA----GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFSEF 1024 (1458)
Q Consensus 957 IlrK~----~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN~f 1024 (1458)
.+++. ........ ... ..+.... ....+++.+.+|++ +++...++..|+++++.+|..
T Consensus 336 ~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~---~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~n~~ 398 (481)
T PRK14534 336 KLTYFYSSLDQFDLNLL-----NKD--LENIEFS---LEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNLS 398 (481)
T ss_pred HHHHHHHhhhhcccccc-----ccc--cccchhh---hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHh
Confidence 22211 00000000 000 0000000 11234445555555 688889999999999999964
No 25
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.8e-30 Score=317.75 Aligned_cols=317 Identities=14% Similarity=0.115 Sum_probs=232.6
Q ss_pred CCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCC
Q psy15414 595 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 674 (1458)
Q Consensus 595 ~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~ 674 (1458)
+.|.+. .+++|.++.|+|+|++++||||+|+.|..|+|+|+|+..||+|..+.+++|+|..|-.-+
T Consensus 239 e~f~P~-~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A------------- 304 (699)
T PRK14535 239 EPFAPI-DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARA------------- 304 (699)
T ss_pred eccccC-CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHH-------------
Confidence 444333 567899999999999999999999999999999999999999999999999986553211
Q ss_pred CCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE---Eecccccccc
Q psy15414 675 SPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT---LTERGESFYQ 751 (1458)
Q Consensus 675 ~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~---f~~~geS~~~ 751 (1458)
. +.|- -|+.+++.+.+.|.+.++.|||. +.++ .|.|+
T Consensus 305 --------------~--------------------e~G~-----sp~ela~~y~~~F~~d~~~LnI~~p~~~pr-aTeHI 344 (699)
T PRK14535 305 --------------A--------------------ENGE-----TIGELTARFIQAMHEDADALGVLRPDIEPK-ATENI 344 (699)
T ss_pred --------------H--------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcEeeC-ccchH
Confidence 1 0110 03456777889999999999995 4444 68899
Q ss_pred hhHHHHHHHHHHcCCeEee-CCcEEEEcCC--------------------------CC-CCCcEEEcC--CCCccCCCcc
Q psy15414 752 KHMEQLVPYLEKKGLLELD-DGRKIMWGED--------------------------RG-SIPMTIVKS--DGGFTYDTSD 801 (1458)
Q Consensus 752 ~~v~~vi~~L~~kG~~ye~-dGa~~~~~d~--------------------------~d-~~~~vL~ks--DGt~tY~trD 801 (1458)
+.|.++++.|.++|++|+. +|.+|+.+.. |. ..+++|||+ .|.+.|-+++
T Consensus 345 ~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPW 424 (699)
T PRK14535 345 PQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPW 424 (699)
T ss_pred HHHHHHHHHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCC
Confidence 9999999999999999986 6888775421 00 035889984 5667777765
Q ss_pred ----hHHHHHHhh--hcCCCeEEEEeeCCccccHHHHH-HHHH--H-cCCC--------------CCCcceEEEEEeEEE
Q psy15414 802 ----LAAIRQRIE--EEKADWIVYVTDLGQGVHFRLLE-ECAK--K-AGIL--------------NPNKTRMDFVGFGVV 857 (1458)
Q Consensus 802 ----iA~~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~-~il~--a-lG~~--------------~~~~~~~~H~~fg~V 857 (1458)
.+||+.-.. ..-++..|+|||++.++.|||++ .+++ + .|.. .+++.+|+|++|..
T Consensus 425 G~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~- 503 (699)
T PRK14535 425 GNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR- 503 (699)
T ss_pred CCCCCchHHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEe-
Confidence 556654211 11245789999999999999998 4554 3 3421 14788999999944
Q ss_pred ecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHH
Q psy15414 858 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 937 (1458)
Q Consensus 858 ~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l 937 (1458)
.+|+|||||+||++++.|++++++ -+++||++|+.+++++++|+++.+.
T Consensus 504 --vdGeKMSKSLGN~it~~dlLe~yg-----------------------------pdalRl~lLsshYRspL~fS~e~Le 552 (699)
T PRK14535 504 --VDGEKMSKSLGNFFTIREVLKQYD-----------------------------PEVVRFFILRAHYRSPLNYSDAHLD 552 (699)
T ss_pred --eCCCccCCCCCCcCCHHHHHHhCC-----------------------------HHHHHHHHHcCCCCCCCCcCHHHHH
Confidence 388999999999999999999763 1358999999999999999999877
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q psy15414 938 DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYD 1016 (1458)
Q Consensus 938 ~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~ 1016 (1458)
+.. -.+.|+...+++.... ...+ ...+..+++.+.+|++ +++...++..|++
T Consensus 553 ~Ak--------~~l~Rl~~~l~~~~~~-----------~~~~--------~~~l~~~~~~f~~AL~DDlntp~Ala~L~~ 605 (699)
T PRK14535 553 DAK--------GALTRLYTTLKNTPAA-----------EFML--------SENVNDYTRRFYAAMNDDFGTVEAVAVLFE 605 (699)
T ss_pred HHH--------HHHHHHHHHHHhhhhc-----------cchh--------hhhHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 642 2234555555432100 0000 1123345566666665 5888899999999
Q ss_pred HHHHHHhh
Q psy15414 1017 ISTAFSEF 1024 (1458)
Q Consensus 1017 LA~~fN~f 1024 (1458)
+++.+|+.
T Consensus 606 lvk~iN~~ 613 (699)
T PRK14535 606 LAGEVNKT 613 (699)
T ss_pred HHHHHHHH
Confidence 99999975
No 26
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.7e-29 Score=309.02 Aligned_cols=383 Identities=16% Similarity=0.202 Sum_probs=277.5
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
.++++|-..=|.|+|++||||++++|.+|+++|.+|..||+|..+..-+++|+.|..-+..
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~------------------- 64 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK------------------- 64 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-------------------
Confidence 4688999999999999999999999999999999999999999999999999988643211
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVP 759 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~ 759 (1458)
+.-+| +.+++.+.+.|.++|+.|||+|+. ..++.|...++++++
T Consensus 65 ---------------------------~g~tP------~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~ 111 (558)
T COG0143 65 ---------------------------EGITP------QELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFL 111 (558)
T ss_pred ---------------------------cCCCH------HHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHHH
Confidence 11122 235777888999999999998764 234457889999999
Q ss_pred HHHHcCCeEee--CCcEEE----E-------------------cCCCC-----------CCCcE----------------
Q psy15414 760 YLEKKGLLELD--DGRKIM----W-------------------GEDRG-----------SIPMT---------------- 787 (1458)
Q Consensus 760 ~L~~kG~~ye~--dGa~~~----~-------------------~d~~d-----------~~~~v---------------- 787 (1458)
+|.++|++|.. .|.+|. | +|.++ +.|+.
T Consensus 112 ~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyF 191 (558)
T COG0143 112 KLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYF 191 (558)
T ss_pred HHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEE
Confidence 99999999965 243331 0 00011 00111
Q ss_pred ------------------------------------------EEc-----------CCCCccCCCcc--hHHH---HH--
Q psy15414 788 ------------------------------------------IVK-----------SDGGFTYDTSD--LAAI---RQ-- 807 (1458)
Q Consensus 788 ------------------------------------------L~k-----------sDGt~tY~trD--iA~~---~~-- 807 (1458)
+.| ..+.+.|..=| +.|+ .+
T Consensus 192 f~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~ 271 (558)
T COG0143 192 FRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELA 271 (558)
T ss_pred EEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcchh
Confidence 111 01222222222 1111 00
Q ss_pred ------Hhhh-cCC--CeEEEEeeCCccccHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 808 ------RIEE-EKA--DWIVYVTDLGQGVHFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 808 ------k~~~-~~~--d~iIyVvg~dq~~hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
.+.+ |.. .++++++|.|-..++...+ ++|.+.|...|. + .+.+|+++. +|+|||||+||+|++.+
T Consensus 272 ~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~--~--i~ahg~l~~-~G~KmSKSrG~~V~~~~ 346 (558)
T COG0143 272 EIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPT--R--IFAHGFLTL-EGQKMSKSRGNVVDPDE 346 (558)
T ss_pred ccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCC--E--EEeeeeEEE-CCccccccCCcEEeHHH
Confidence 0000 122 2567777777554444444 677777764332 3 444555554 78899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCccccchhhHHh-hhcCcHHHHHHHHHHHH
Q psy15414 878 LLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLD-DRGNTAVYLLYAYTRIA 955 (1458)
Q Consensus 878 LLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi~ 955 (1458)
++++++ .+++|||+++..+ ++|.+|||+.+.+ .|++..+-+++..+|+.
T Consensus 347 ~~~~~~-----------------------------~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~ 397 (558)
T COG0143 347 LLEQYG-----------------------------VDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTL 397 (558)
T ss_pred HHHHcC-----------------------------chHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999863 3569999999988 8999999999998 48888888888889999
Q ss_pred HHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhc-cc-ccc
Q psy15414 956 SIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC-YC-IEK 1033 (1458)
Q Consensus 956 SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~-~v-L~k 1033 (1458)
+++.|+.... +|... ... .+.+.+++..+....+.+.++++.++.++++.-+++|+...|+|++.. |+ |.|
T Consensus 398 ~fi~k~~~g~--vp~~~----~~~-~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k 470 (558)
T COG0143 398 GFINKYFDGV--VPAAG----APD-LEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAK 470 (558)
T ss_pred HHHHhccCCc--CCccc----ccc-chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhc
Confidence 9999985432 33210 111 256788999999999999999999999999999999999999999988 54 655
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcCCCcc
Q psy15414 1034 DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVPVR 1099 (1458)
Q Consensus 1034 ~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~~~ 1099 (1458)
++ ..+|+ .+|..+..+++++|++ .|+|+||...+++.+++|.+..
T Consensus 471 ~~-------~~~~~---~~vl~~~~~~~r~la~-----------ll~P~mP~~a~ki~~~L~~~~~ 515 (558)
T COG0143 471 ED-------KRERL---ATVLYLALELVRVLAI-----------LLYPFMPETAEKIWDQLGLEED 515 (558)
T ss_pred cC-------cHHHH---HHHHHHHHHHHHHHHH-----------HhcCcCcchHHHHHHHhCCccc
Confidence 42 34566 6777777888888888 8999999999999999997533
No 27
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.97 E-value=3.2e-29 Score=306.71 Aligned_cols=323 Identities=16% Similarity=0.162 Sum_probs=228.0
Q ss_pred cCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCC
Q psy15414 593 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL 672 (1458)
Q Consensus 593 ~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~ 672 (1458)
+.+.|.+. .+++|.++.|+|+|++++||||+|+.|.+|+++|+|+..||+|..+.+++|+|..|-.-+
T Consensus 10 ~~e~f~p~-~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A----------- 77 (465)
T TIGR00435 10 QKEEFEPL-VQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRA----------- 77 (465)
T ss_pred CeeccccC-CCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHH-----------
Confidence 34455443 456899999999999999999999999999999999999999999999999987553211
Q ss_pred CCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--cccccc
Q psy15414 673 TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFY 750 (1458)
Q Consensus 673 ~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~geS~~ 750 (1458)
.+ +.-+ |+.+++.+.+.|.++|++|||.++. ..+|.|
T Consensus 78 ----------------~~-------------------~g~~------~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~h 116 (465)
T TIGR00435 78 ----------------RE-------------------NGES------VYEVSERFIEAYFEDMKALNVLPPDLEPRATEH 116 (465)
T ss_pred ----------------HH-------------------cCCC------HHHHHHHHHHHHHHHHHHhCCCCCcCCcccccc
Confidence 00 0011 2346788899999999999997643 247789
Q ss_pred chhHHHHHHHHHHcCCeEeeC-CcEEEEcCC--------------------------CC-CCCcEEEcC--CCCccCCCc
Q psy15414 751 QKHMEQLVPYLEKKGLLELDD-GRKIMWGED--------------------------RG-SIPMTIVKS--DGGFTYDTS 800 (1458)
Q Consensus 751 ~~~v~~vi~~L~~kG~~ye~d-Ga~~~~~d~--------------------------~d-~~~~vL~ks--DGt~tY~tr 800 (1458)
.+.+.+++++|.++|++|+++ |++|+.+.. |. ..+++|||+ .|.+.|.++
T Consensus 117 i~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~sp 196 (465)
T TIGR00435 117 IDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSP 196 (465)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCC
Confidence 999999999999999999998 998875421 00 035789884 455666654
Q ss_pred c----hHHHHHHhh--hcCCCeEEEEeeCCccccHHHHH-HHHH--H-cCCCCCCcceEEEEEeEEEecCCCcccccccC
Q psy15414 801 D----LAAIRQRIE--EEKADWIVYVTDLGQGVHFRLLE-ECAK--K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSG 870 (1458)
Q Consensus 801 D----iA~~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~-~il~--a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~G 870 (1458)
+ .++|+.--. ..-++..++|++++.++.||++. .+++ + .| .+++..|+|.++ |. .+|+|||||+|
T Consensus 197 wG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g--~~~~~~~~h~g~--v~-~~g~KMSKS~G 271 (465)
T TIGR00435 197 WGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFG--KQLAKYWMHNGF--LM-IDNEKMSKSLG 271 (465)
T ss_pred CCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcC--CCCCcEEEEeeE--EE-ecCccccccCC
Confidence 3 344433210 11245678999999999999998 3333 3 35 367789999776 44 37899999999
Q ss_pred CccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHH
Q psy15414 871 DTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYA 950 (1458)
Q Consensus 871 nvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa 950 (1458)
|+|+++|++++++ -+++||++|+.+++++++||++.+.+.. +.-..+..+
T Consensus 272 N~i~~~dll~~~~-----------------------------~dalR~~ll~~~~~~~l~fs~~~l~~a~-~~~~rl~~~ 321 (465)
T TIGR00435 272 NFFTVRDVLKNYD-----------------------------PEILRYFLLSVHYRSPLDFSEELLEAAK-NALERLYKA 321 (465)
T ss_pred CcCCHHHHHHHCC-----------------------------HHHHHHHHHhCCCCCCCccCHHHHHHHH-HHHHHHHHH
Confidence 9999999999763 1469999999999999999999877653 222334444
Q ss_pred HHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH
Q psy15414 951 YTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFS 1022 (1458)
Q Consensus 951 ~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN 1022 (1458)
+.++...+.. .. . ..... .. . ...+.+.+.+|++ +++...++..|+++++..|
T Consensus 322 ~~~~~~~~~~---~~---~-----~~~~~-~~---~----~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n 375 (465)
T TIGR00435 322 LRVLDTTLAY---SG---N-----QSLNK-FP---D----EKEFEARFVEAMDDDLNTANALAVLFELAKSIN 375 (465)
T ss_pred HHHHHhhhcc---cc---c-----ccccc-ch---h----HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 4443221110 00 0 00000 01 1 1223444445554 6888899999999999999
No 28
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.1e-28 Score=291.57 Aligned_cols=309 Identities=16% Similarity=0.098 Sum_probs=226.2
Q ss_pred CCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
++.+|.++.|||+|++++||||+|++|..|+|+|+|+..||+|..+.+++|+|..|-.-+..
T Consensus 6 ~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~------------------ 67 (384)
T PRK12418 6 PGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR------------------ 67 (384)
T ss_pred CCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHH------------------
Confidence 34489999999999999999999999999999999999999999999999998766421110
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE-E--ecccccccchhHHHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-L--TERGESFYQKHMEQLV 758 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~-f--~~~geS~~~~~v~~vi 758 (1458)
+..+ ++.+++.+.+.|.+.+++|||. + .++ .|.+.+.+++++
T Consensus 68 ----------------------------~G~~------~~e~a~~~~~~f~~d~~~Lni~~~~~~~r-aTe~i~~~~~~i 112 (384)
T PRK12418 68 ----------------------------DGVD------WRDLAEREIALFREDMEALRVLPPRDYVG-AVESIPEVVELV 112 (384)
T ss_pred ----------------------------cCCC------HHHHHHHHHHHHHHHHHHhCCCCCCcccc-CCCCHHHHHHHH
Confidence 0111 3346777888999999999983 2 333 567889999999
Q ss_pred HHHHHcCCeEeeCC----cEEEEcCC------------------------------CCC-CCcEEEcC--CCCccCCCcc
Q psy15414 759 PYLEKKGLLELDDG----RKIMWGED------------------------------RGS-IPMTIVKS--DGGFTYDTSD 801 (1458)
Q Consensus 759 ~~L~~kG~~ye~dG----a~~~~~d~------------------------------~d~-~~~vL~ks--DGt~tY~trD 801 (1458)
++|.++|++|+.+| .+||++.. |.. .+++|||+ .|.+.|-+++
T Consensus 113 ~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~spw 192 (384)
T PRK12418 113 EKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPF 192 (384)
T ss_pred HHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCCC
Confidence 99999999999988 78875310 010 35789885 4556676665
Q ss_pred ----hHHHHHHhh--hcCCCeEEEEeeCCccccHHHHH-HHHH--H-cCCCCCCcceEEEEEeEEEecCCCcccccccCC
Q psy15414 802 ----LAAIRQRIE--EEKADWIVYVTDLGQGVHFRLLE-ECAK--K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD 871 (1458)
Q Consensus 802 ----iA~~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~-~il~--a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gn 871 (1458)
.+||+.-.. ..-++..++|++++.++.||++. .+++ + .|- .|++..|+|.++ +..+|+|||||+||
T Consensus 193 G~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~-~~~~~~w~H~g~---l~~~G~KMSKSlGN 268 (384)
T PRK12418 193 GPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGE-RRFARHYVHAGM---IGLDGEKMSKSRGN 268 (384)
T ss_pred CCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCC-CCcceEEEECCE---ECCCCCcccCcCCC
Confidence 455543210 11245678999999999999998 3444 3 352 368899999998 34589999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHH
Q psy15414 872 TVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAY 951 (1458)
Q Consensus 872 vI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~ 951 (1458)
+|++.|+++... ++ .++||++|+.+++++++|+++.+.+. +..+
T Consensus 269 ~i~~~ell~~G~----------------d~------------~~lR~~lls~~yr~~l~fs~e~l~~a--------~~~l 312 (384)
T PRK12418 269 LVFVSRLRAAGV----------------DP------------AAIRLALLAGHYRADREWTDAVLAEA--------EARL 312 (384)
T ss_pred cCCHHHHHhccC----------------Ch------------hheeEEEeccCCCCCcccCHHHHHHH--------HHHH
Confidence 999999864311 11 26999999999999999999997754 2233
Q ss_pred HHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhhhhhc
Q psy15414 952 TRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFSEFYDNC 1028 (1458)
Q Consensus 952 aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN~fy~~~ 1028 (1458)
.|+.+.++... .+ .+..+.+.+..+++ +++...++..|+++++.+|.|....
T Consensus 313 ~r~~~~~~~~~------------------~~-------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~ 365 (384)
T PRK12418 313 ARWRAAAALPA------------------GP-------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDD 365 (384)
T ss_pred HHHHHHHhccc------------------cc-------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 45544443210 00 11223455555555 5899999999999999999986443
No 29
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.97 E-value=5.1e-30 Score=289.60 Aligned_cols=251 Identities=20% Similarity=0.201 Sum_probs=176.6
Q ss_pred CCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
.+++|.++.|+|+|+...||||+|+.|..|+|.|+|++.||+|..+.+|+|..-
T Consensus 5 ~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDD-------------------------- 58 (300)
T PF01406_consen 5 NPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDD-------------------------- 58 (300)
T ss_dssp CTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSH--------------------------
T ss_pred CCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccch--------------------------
Confidence 678999999999999999999999999999999999999999999999999742
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE---EecccccccchhHHHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT---LTERGESFYQKHMEQLV 758 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~---f~~~geS~~~~~v~~vi 758 (1458)
+++.++.+ .|- -|+.+++.+.+.|.+++++|||. ..++ .|.|++.|.++|
T Consensus 59 -Kii~~A~~--------------------~g~-----~~~ela~~y~~~f~~dm~~Lnv~~p~~~pr-ate~i~~ii~~i 111 (300)
T PF01406_consen 59 -KIIKRARE--------------------EGV-----SPQELARRYEEEFFEDMKALNVLPPDHYPR-ATEHIPEIIELI 111 (300)
T ss_dssp -HHHHHHHH--------------------TTS------HHHHHHHHHHHHHHHHHHTT----SEEEE-GGGGHHHHHHHH
T ss_pred -HHHHHHHh--------------------ccC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccc-hhccHHHHHHHH
Confidence 23332221 111 15567888899999999999994 3455 788999999999
Q ss_pred HHHHHcCCeEeeC-CcEEEEcCC--------------------------CC-CCCcEEEcC--CCCccCCCcc----hHH
Q psy15414 759 PYLEKKGLLELDD-GRKIMWGED--------------------------RG-SIPMTIVKS--DGGFTYDTSD----LAA 804 (1458)
Q Consensus 759 ~~L~~kG~~ye~d-Ga~~~~~d~--------------------------~d-~~~~vL~ks--DGt~tY~trD----iA~ 804 (1458)
+.|+++|++|+.+ |.+++++.. |. ..+++|||. .|.+.|-++. .++
T Consensus 112 ~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGW 191 (300)
T PF01406_consen 112 EKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGW 191 (300)
T ss_dssp HHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-H
T ss_pred HHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCce
Confidence 9999999999998 999987531 11 135789975 4556666654 455
Q ss_pred HHHHhh--hcCCCeEEEEeeCCccccHHHHH-HHHH--Hc-CCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHH
Q psy15414 805 IRQRIE--EEKADWIVYVTDLGQGVHFRLLE-ECAK--KA-GILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSEL 878 (1458)
Q Consensus 805 ~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~-~il~--al-G~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DL 878 (1458)
|+.-.. ...++..|+|+|++.++.||+++ .+++ ++ | .+++..|+|+++-.+ +|+|||||+||+++++|+
T Consensus 192 HiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g--~~~a~~W~H~g~l~~---~g~KMSKSlgN~~~i~dl 266 (300)
T PF01406_consen 192 HIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATG--KPFANYWMHNGHLNV---DGEKMSKSLGNFITIRDL 266 (300)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHS--S-SEEEEEEE--EEE---TTCE--TTTT---BHHHH
T ss_pred eeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhC--chHHHHHHHHHHHhh---cCccccccCCCEEEHHHH
Confidence 543210 01133569999999999999998 3444 33 5 468999999999444 789999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhh
Q psy15414 879 LDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 939 (1458)
Q Consensus 879 Lde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~ 939 (1458)
++.+. + .++||++|+.+++++++|+++.+.+.
T Consensus 267 l~~~~-----------------~------------~~lR~~~l~~hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 267 LKKYS-----------------P------------DALRLFLLSTHYRKPLNFSEENLEEA 298 (300)
T ss_dssp HTTS------------------H------------HHHHHHHHTS-TTS-EEE-HHHHHHH
T ss_pred hhcCC-----------------H------------HHHHHHHhcCCCCCccccCHHHHHHh
Confidence 98642 2 25899999999999999999987653
No 30
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.96 E-value=1.6e-28 Score=291.29 Aligned_cols=304 Identities=15% Similarity=0.107 Sum_probs=220.0
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
+++|.|+.|+|+|++++||||+|++|..|+|+|+|+..||+|..+.+++|+|..|-.-+.
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~-------------------- 93 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAE-------------------- 93 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHH--------------------
Confidence 568999999999999999999999999999999999999999999999999876532110
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE-E-ecccccccchhHHHHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-L-TERGESFYQKHMEQLVPY 760 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~-f-~~~geS~~~~~v~~vi~~ 760 (1458)
++|- -++.+++.+...|.+++++|||. + ..-..|.+++.+.++++.
T Consensus 94 ---------------------------~~g~-----t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~ 141 (411)
T TIGR03447 94 ---------------------------RDGV-----DWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEK 141 (411)
T ss_pred ---------------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHH
Confidence 0110 03346777888999999999985 2 222357778999999999
Q ss_pred HHHcCCeEeeCC----cEEEEcCC------------------------------CCC-CCcEEEcC--CCCccCCCcc--
Q psy15414 761 LEKKGLLELDDG----RKIMWGED------------------------------RGS-IPMTIVKS--DGGFTYDTSD-- 801 (1458)
Q Consensus 761 L~~kG~~ye~dG----a~~~~~d~------------------------------~d~-~~~vL~ks--DGt~tY~trD-- 801 (1458)
|.++|++|+.+| .+||++.. |.. .+++|||. .|.+.|-+++
T Consensus 142 L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~ 221 (411)
T TIGR03447 142 LLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGP 221 (411)
T ss_pred HHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCC
Confidence 999999999887 78875310 000 35789884 4556666664
Q ss_pred --hHHHHHHh--hhcCCCeEEEEeeCCccccHHHHH-HHHH--H-cCCCCCCcceEEEEEeEEEecCCCcccccccCCcc
Q psy15414 802 --LAAIRQRI--EEEKADWIVYVTDLGQGVHFRLLE-ECAK--K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTV 873 (1458)
Q Consensus 802 --iA~~~~k~--~~~~~d~iIyVvg~dq~~hf~~l~-~il~--a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI 873 (1458)
.+||+.-. ...-++..++|++++.++.||+++ .+++ + .|. .|++..|+|.++ +..+|+|||||+||+|
T Consensus 222 GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~-~~~~~~w~H~g~---l~~~G~KMSKSlGN~i 297 (411)
T TIGR03447 222 GRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGV-RRMARHYVHAGM---IGLDGEKMSKSLGNLV 297 (411)
T ss_pred CCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCC-CCcceEEEECCE---ECcCCCCccCcCCCCC
Confidence 45554421 011245689999999999999998 4554 2 342 368899999998 3348899999999999
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHH
Q psy15414 874 KLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 953 (1458)
Q Consensus 874 ~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aR 953 (1458)
++.|+++... ++ .++||++++.+++++++|+++.+.+.. -.+.|
T Consensus 298 ~~~dl~~~g~----------------dp------------~~lRl~lls~~Yr~pl~fs~e~l~~a~--------~~l~r 341 (411)
T TIGR03447 298 FVSKLRAAGV----------------DP------------AAIRLGLLAGHYRQDRDWTDAVLAEAE--------ARLAR 341 (411)
T ss_pred CHHHHHhcCC----------------Cc------------ccEEEEEecCCCCCCCccCHHHHHHHH--------HHHHH
Confidence 9999865411 11 369999999999999999999887542 22334
Q ss_pred HHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHh
Q psy15414 954 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFSE 1023 (1458)
Q Consensus 954 i~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN~ 1023 (1458)
+...+.+.. .+ . +..+...+.++++ +++...++..|+++++.+|.
T Consensus 342 l~~~~~~~~------------------~~---~----~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~ 387 (411)
T TIGR03447 342 WRAALAATD------------------AP---D----ATDLIARLRQHLANDLDTPAALAAVDNWAAAALS 387 (411)
T ss_pred HHHHHhhcc------------------cc---h----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 433333210 00 0 1122233334444 68888999999999998775
No 31
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=6e-28 Score=302.34 Aligned_cols=377 Identities=15% Similarity=0.157 Sum_probs=263.8
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
++++|-.+-|+|+|++||||+|+.++.|+++|+++..||+|..+.+++|+|..|...+..
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~-------------------- 60 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE-------------------- 60 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHH--------------------
Confidence 468899999999999999999999999999999999999999999999999866422110
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHHH
Q psy15414 684 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPY 760 (1458)
Q Consensus 684 iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~~ 760 (1458)
+..++ +.+++.+...|.+++++|||.++. ..+..|.+.+.+++++
T Consensus 61 --------------------------~g~~~------~~~~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~~ 108 (511)
T PRK11893 61 --------------------------AGISP------QELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQR 108 (511)
T ss_pred --------------------------cCCCH------HHHHHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHHHHH
Confidence 00011 234666788899999999997653 2233478899999999
Q ss_pred HHHcCCeEeeCCcEEEEcCC--C----------------C----------------------------------------
Q psy15414 761 LEKKGLLELDDGRKIMWGED--R----------------G---------------------------------------- 782 (1458)
Q Consensus 761 L~~kG~~ye~dGa~~~~~d~--~----------------d---------------------------------------- 782 (1458)
|.++|++|+.++.+++.... . +
T Consensus 109 L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 188 (511)
T PRK11893 109 LLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRN 188 (511)
T ss_pred HHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 99999999876643321100 0 0
Q ss_pred --------C-CCcEEEcCCCC-----------c--cCCCcchHHHHH------------Hhhh-cCCCeEEEEeeCCccc
Q psy15414 783 --------S-IPMTIVKSDGG-----------F--TYDTSDLAAIRQ------------RIEE-EKADWIVYVTDLGQGV 827 (1458)
Q Consensus 783 --------~-~~~vL~ksDGt-----------~--tY~trDiA~~~~------------k~~~-~~~d~iIyVvg~dq~~ 827 (1458)
+ .+..|.|++.. . +|+-.=++|..- .+.. +..| +++.|.|+..
T Consensus 189 ~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D--~~~~G~D~~~ 266 (511)
T PRK11893 189 EVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPAD--VHLIGKDILR 266 (511)
T ss_pred HHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCc--ceEecccccc
Confidence 0 12223331110 1 111110111100 0110 1112 3555555544
Q ss_pred cHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHH
Q psy15414 828 HFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSE 906 (1458)
Q Consensus 828 hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~ 906 (1458)
.+.-.+ +++.++|+. ....+.|++| |+. +|+|||||+||+|++.|++++++
T Consensus 267 ~h~~~~~a~~~a~~~~--~p~~~~~~g~--v~~-~G~KMSKS~GN~i~~~dll~~~g----------------------- 318 (511)
T PRK11893 267 FHAVYWPAFLMAAGLP--LPKRVFAHGF--LTL-DGEKMSKSLGNVIDPFDLVDEYG----------------------- 318 (511)
T ss_pred cchhHHHHHHHhCCCC--CCCEEEeecc--EEE-CCeeecccCCcEEcHHHHHHHcC-----------------------
Confidence 222222 555566653 3357777766 554 79999999999999999999864
Q ss_pred HHHhhhhhheeeeeecCCC-CCccccchhhHHh-hhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHH
Q psy15414 907 AQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKE 984 (1458)
Q Consensus 907 ~ad~v~~~alRy~lLs~~~-~~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e 984 (1458)
.+++||++++..+ .+|++||++.+.. .|++++++++|.++|+.+++++..... +|. ...+ .+.+
T Consensus 319 ------~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~--~~~-----~~~~-~~~d 384 (511)
T PRK11893 319 ------VDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGK--VPE-----PGAL-TEAD 384 (511)
T ss_pred ------cHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCC-----Cccc-chhh
Confidence 2469999999855 8999999999876 578889999999999999998763211 111 0112 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc-c-cccccccccccchhHHHHHHHHHHHHHHHHhh
Q psy15414 985 FALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY-C-IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1062 (1458)
Q Consensus 985 ~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~-v-L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~ 1062 (1458)
+.|+..+..+++.+.+++++++++.++.+++++++.+|.|++.++ + +.++ ...+ +.++..++.++++
T Consensus 385 ~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~~~~~--------~~~~---~~~~l~~~~~~l~ 453 (511)
T PRK11893 385 EALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWSLAKT--------DPER---LATVLYTLLEVLR 453 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChhhhcC--------CHHH---HHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999998774 3 2221 1123 3667777777777
Q ss_pred hcccccchhhHHhhccCCcchhhhHHHhhhhcCCCc
Q psy15414 1063 ILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVPV 1098 (1458)
Q Consensus 1063 LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~~ 1098 (1458)
.|.+ .++|+||...+.+...||.+.
T Consensus 454 ~l~~-----------ll~P~~P~~ae~i~~~L~~~~ 478 (511)
T PRK11893 454 GIAV-----------LLQPVMPELAAKILDQLGVEE 478 (511)
T ss_pred HHHH-----------HHhCccchHHHHHHHHhCCCc
Confidence 7776 889999999999999998743
No 32
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.96 E-value=1.6e-27 Score=299.23 Aligned_cols=374 Identities=15% Similarity=0.161 Sum_probs=263.7
Q ss_pred EEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHH
Q psy15414 607 LVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 686 (1458)
Q Consensus 607 ~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~ 686 (1458)
+|--.-|||+|++||||+|+.++.|+|+|.++..|++|..+..++|+|..+...+..
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~----------------------- 58 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ----------------------- 58 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-----------------------
Confidence 466778999999999999999999999999999999999999999999866321110
Q ss_pred HhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecc---cccccchhHHHHHHHHHH
Q psy15414 687 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEK 763 (1458)
Q Consensus 687 ~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~---geS~~~~~v~~vi~~L~~ 763 (1458)
+..+ ++.+++.+.+.|.++|++|||+++.. .++.|.+.+.+++++|.+
T Consensus 59 -----------------------~g~~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~ 109 (530)
T TIGR00398 59 -----------------------EGLT------PKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKE 109 (530)
T ss_pred -----------------------cCCC------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHH
Confidence 0011 23467888999999999999987532 244578889999999999
Q ss_pred cCCeEeeCCcEEEEcC-----------CC---------------------------------CCC---------------
Q psy15414 764 KGLLELDDGRKIMWGE-----------DR---------------------------------GSI--------------- 784 (1458)
Q Consensus 764 kG~~ye~dGa~~~~~d-----------~~---------------------------------d~~--------------- 784 (1458)
+|++|++++..++... +. .+.
T Consensus 110 kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~ 189 (530)
T TIGR00398 110 NGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRLS 189 (530)
T ss_pred CCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEhH
Confidence 9999987654332100 00 000
Q ss_pred ------------------------------------CcEEEc-C----------CCCccCCCcc--hHHHH---H-----
Q psy15414 785 ------------------------------------PMTIVK-S----------DGGFTYDTSD--LAAIR---Q----- 807 (1458)
Q Consensus 785 ------------------------------------~~vL~k-s----------DGt~tY~trD--iA~~~---~----- 807 (1458)
+.-+-| . +|...|..-| ++|.. +
T Consensus 190 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~~ 269 (530)
T TIGR00398 190 AFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGDT 269 (530)
T ss_pred HHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCCh
Confidence 000000 0 1112222222 12211 0
Q ss_pred -Hhh-hcCC---CeEEEEeeCCccccHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHH
Q psy15414 808 -RIE-EEKA---DWIVYVTDLGQGVHFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDE 881 (1458)
Q Consensus 808 -k~~-~~~~---d~iIyVvg~dq~~hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde 881 (1458)
.+. .+.. .+++++.|.|...+..-++ +++.++|+..| . .|+.+|+|+.. |+|||||+||+|+++|++++
T Consensus 270 ~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~--~--~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~~ 344 (530)
T TIGR00398 270 EDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLP--T--QVFSHGYLTVE-GGKMSKSLGNVVDPSDLLAR 344 (530)
T ss_pred hhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCC--C--EEEeeccEEEC-CceecccCCceecHHHHHHH
Confidence 000 0111 2456677777543322333 57777886322 2 35556667764 99999999999999999998
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCC-CCCccccchhhHHhh-hcCcHHHHHHHHHHHHHHHH
Q psy15414 882 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN-RNLDYVFSFDKMLDD-RGNTAVYLLYAYTRIASIAR 959 (1458)
Q Consensus 882 ~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~-~~~d~~Fd~d~~l~~-n~n~g~ylqYa~aRi~SIlr 959 (1458)
++ .+++||++++.. ..+|++||++.+.+. |.+..++++|+++|+.+++.
T Consensus 345 ~g-----------------------------~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~ 395 (530)
T TIGR00398 345 FG-----------------------------ADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIK 395 (530)
T ss_pred cC-----------------------------chHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 256999999976 489999999997764 56777899999999999988
Q ss_pred HhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc-c-ccccccc
Q psy15414 960 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY-C-IEKDAEG 1037 (1458)
Q Consensus 960 K~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~-v-L~k~~~~ 1037 (1458)
++.... ++. ....++.++.|+..+.++++.+.+++++++++.+++++++++..+|.|++.++ + +.++
T Consensus 396 ~~~~~~--~~~------~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~--- 464 (530)
T TIGR00398 396 KYFNGV--LPS------EDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQ--- 464 (530)
T ss_pred HhcCCc--CCC------CcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCC---
Confidence 753211 111 11124568889999999999999999999999999999999999999999885 3 2221
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcCCC
Q psy15414 1038 KIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVP 1097 (1458)
Q Consensus 1038 ~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~ 1097 (1458)
. .++ .++..++..+++.|.+ .|+|++|...+.+.+.+|++
T Consensus 465 -----~-~~~---~~~~~~l~~~l~~l~~-----------ll~P~~P~~ae~i~~~L~~~ 504 (530)
T TIGR00398 465 -----S-PRL---KELLAVCSMLIRVLSI-----------LLYPIMPKLSEKILKFLNFE 504 (530)
T ss_pred -----h-HHH---HHHHHHHHHHHHHHHH-----------HHhCcccHHHHHHHHHhCCC
Confidence 1 122 5567777778888877 88999999999999999874
No 33
>KOG2007|consensus
Probab=99.96 E-value=3.3e-28 Score=281.02 Aligned_cols=368 Identities=16% Similarity=0.176 Sum_probs=263.1
Q ss_pred HHHHHcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHH-HcCCcEEEEeecCCchhHHHHHHHHHHh
Q psy15414 588 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLE-YLGHDVVRLNHVGDWGTQFGMLIAHLQD 666 (1458)
Q Consensus 588 ~~i~~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~-~~Gy~V~r~~yInD~G~Qi~~l~~~~~~ 666 (1458)
|.+.+.++.|.+ ..+++|-.|.|+|+++...||||+|++|-.|+|.|||+ +.||+|+.+++|+|..- +++
T Consensus 39 NslTr~Ke~fip-~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDD---KII----- 109 (586)
T KOG2007|consen 39 NSLTRQKEVFIP-NNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDD---KII----- 109 (586)
T ss_pred eccccccceeee-CCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhH---HHH-----
Confidence 344455666643 36778999999999999999999999999999999999 99999999999999743 222
Q ss_pred hcCCCCCCCCChhHHHHHHHHhhh-ccCCcHHHHHHHHHHHHHHhcCChhHHHHHHH-HHHHHHHHHHHHHHHhCCE---
Q psy15414 667 KFPDYLTKSPPIADLQAFYKESKK-RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEM-ICDVSRRDFQKIYDRLNVT--- 741 (1458)
Q Consensus 667 ~~~~~~~~~~~i~~l~~iy~~~~~-~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~-~~~~s~~~f~~~y~~L~i~--- 741 (1458)
.+++. .+.+.| ..|.+ || .+-++|.++|.+||+.
T Consensus 110 -------------------~RAr~~~m~e~~---------------------~~l~~~F~-~~e~eF~~DM~~LnvLpPt 148 (586)
T KOG2007|consen 110 -------------------KRARKEEMGEKP---------------------LSLSERFC-YYEEEFLQDMAALNVLPPT 148 (586)
T ss_pred -------------------HHhhhhhhccch---------------------hhHHHHHH-HHHHHHHHHHHHhCCCCCc
Confidence 22210 011111 11221 33 4567999999999993
Q ss_pred EecccccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCCC-----------------C----------CCcEEEcC--C
Q psy15414 742 LTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG-----------------S----------IPMTIVKS--D 792 (1458)
Q Consensus 742 f~~~geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~d-----------------~----------~~~vL~ks--D 792 (1458)
+..+ .|.|++.|..+|++++++|++|..||.++|+++..+ | .++.|||. .
T Consensus 149 v~tR-VSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DFALWKAsK~ 227 (586)
T KOG2007|consen 149 VQTR-VSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADFALWKASKP 227 (586)
T ss_pred ccch-hhhchHHHHHHHHHHHhCCceeeeCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhhhhhhhhcCC
Confidence 3434 688999999999999999999999999999764311 0 24567764 6
Q ss_pred CCccCCCcc----hHHHHHHhh--hcCCCeEEEEeeCCccccHHHHH-HHHHHcC-C-CCCCcceEEEEEeEEEecCCCc
Q psy15414 793 GGFTYDTSD----LAAIRQRIE--EEKADWIVYVTDLGQGVHFRLLE-ECAKKAG-I-LNPNKTRMDFVGFGVVLGEDRK 863 (1458)
Q Consensus 793 Gt~tY~trD----iA~~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~-~il~alG-~-~~~~~~~~~H~~fg~V~~~~G~ 863 (1458)
|.|.|-+++ .+||+.--. .--++.-++|||++-++-||++. .+++.-- + .++|.++|.|.++-.+ +|+
T Consensus 228 gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i---~g~ 304 (586)
T KOG2007|consen 228 GEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTI---NGE 304 (586)
T ss_pred CCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeee---ccc
Confidence 778777765 444433110 01145679999999999999997 4555321 2 2448999999999444 779
Q ss_pred ccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHh---hh
Q psy15414 864 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD---DR 940 (1458)
Q Consensus 864 KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~---~n 940 (1458)
|||||++|+||+.|+|+.+. | .++|.++|..+.+++++|+-..|.. ++
T Consensus 305 KMSKSLkNFiTIke~Lk~~s-----------------p------------~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e 355 (586)
T KOG2007|consen 305 KMSKSLKNFITIKEALKKYS-----------------P------------RQLRLAFLLHQWRSPLDYSDSTMEQALQLE 355 (586)
T ss_pred hhhhhhccceeHHHHHHhcC-----------------H------------HHHHHHHHHHHhcCcCCchHHHHHHHHHHH
Confidence 99999999999999999873 2 2489999999999999999886654 22
Q ss_pred cCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q psy15414 941 GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDIST 1019 (1458)
Q Consensus 941 ~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~ 1019 (1458)
.-+.+|. +. +..+.+ . .. .+..+ .+.|.+|...+......+..|.- ++....+++.+.+|.+
T Consensus 356 ~~~~~ff-~~---~~al~~-~-~~----------~~~~~-~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs 418 (586)
T KOG2007|consen 356 KSLNNFF-LD---VKALLR-G-AK----------PFEKL-SEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVS 418 (586)
T ss_pred HHHHHHH-HH---HHHHHh-c-cc----------hhhcc-ChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 2222221 11 112222 1 00 01122 46788898888888888888765 5777889999999999
Q ss_pred HHHhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccc
Q psy15414 1020 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1068 (1458)
Q Consensus 1020 ~fN~fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~ 1068 (1458)
..|.|+.... . .++..++.++..-+.+.|.++|++.
T Consensus 419 ~~N~~i~~~~----~---------~~~~~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007|consen 419 QGNAYIRESG----E---------RPNSALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred hhhHHHHHhc----c---------ccchHHHHHHHHHHHHHHHHhCCCc
Confidence 9999987653 1 1223566888888999999999976
No 34
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=2.2e-26 Score=294.93 Aligned_cols=373 Identities=14% Similarity=0.127 Sum_probs=251.5
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
++++|...=|+|+|++||||+|+.++.|+++|+++..||+|..+.+.+|+|..+...+..
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-------------------- 61 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-------------------- 61 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH--------------------
Confidence 467888888999999999999999999999999999999999999999999877532211
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecc---cccccchhHHHHHHH
Q psy15414 684 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPY 760 (1458)
Q Consensus 684 iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~---geS~~~~~v~~vi~~ 760 (1458)
+..+ ++.+++.+.+.|.+.+++|||+++.. .+..|...+++++++
T Consensus 62 --------------------------~g~~------p~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~~ 109 (673)
T PRK00133 62 --------------------------EGIT------PEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLK 109 (673)
T ss_pred --------------------------cCCC------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHHH
Confidence 0111 12357778889999999999976542 233588899999999
Q ss_pred HHHcCCeEeeCCcEEEEc-------------------------CCCC-------------------C-------------
Q psy15414 761 LEKKGLLELDDGRKIMWG-------------------------EDRG-------------------S------------- 783 (1458)
Q Consensus 761 L~~kG~~ye~dGa~~~~~-------------------------d~~d-------------------~------------- 783 (1458)
|.++|++|+.++..++.. +.++ +
T Consensus 110 L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~ 189 (673)
T PRK00133 110 LKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFFF 189 (673)
T ss_pred HHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEEE
Confidence 999999998765433210 0000 0
Q ss_pred -----------------------------------CCcEEEc-----------CCCCccCCCcc--hHHHH----H----
Q psy15414 784 -----------------------------------IPMTIVK-----------SDGGFTYDTSD--LAAIR----Q---- 807 (1458)
Q Consensus 784 -----------------------------------~~~vL~k-----------sDGt~tY~trD--iA~~~----~---- 807 (1458)
.+..+-| .+|...|..-| +.|.. +
T Consensus 190 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~ 269 (673)
T PRK00133 190 KLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKR 269 (673)
T ss_pred EHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhhhhHHHhhhcccc
Confidence 0000000 01222344333 22210 0
Q ss_pred ---Hhhh-cCC---CeEEEEeeCCccccHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHH
Q psy15414 808 ---RIEE-EKA---DWIVYVTDLGQGVHFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELL 879 (1458)
Q Consensus 808 ---k~~~-~~~---d~iIyVvg~dq~~hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLL 879 (1458)
.+.. +.. ..+++++|.|-..++..++ +++.++|+..| .. ++.+|+|+. +|+|||||+||+|++.|++
T Consensus 270 ~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP--~~--v~~hg~v~~-~G~KMSKS~GNvV~p~dli 344 (673)
T PRK00133 270 GGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLP--TN--VFAHGFLTV-EGAKMSKSRGTFIWARTYL 344 (673)
T ss_pred cchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCC--CE--EeeeccEEe-cCCcccccCCcccCHHHHH
Confidence 0000 101 2457777777544333333 67777887543 23 445566777 8999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-C-CccccchhhHHh-hhcCcHHHHHHHHHHHHH
Q psy15414 880 DEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-N-LDYVFSFDKMLD-DRGNTAVYLLYAYTRIAS 956 (1458)
Q Consensus 880 de~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~-~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi~S 956 (1458)
++++ .+++||++++..+ . .|.+|||+.+.. .|++..+-+.+...|+++
T Consensus 345 e~yg-----------------------------aDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~ 395 (673)
T PRK00133 345 DHLD-----------------------------PDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAG 395 (673)
T ss_pred HHcC-----------------------------chHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9874 2469999998877 5 699999999765 466666655555569999
Q ss_pred HHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc-c-cccc
Q psy15414 957 IARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY-C-IEKD 1034 (1458)
Q Consensus 957 IlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~-v-L~k~ 1034 (1458)
++++..... ++ . .+.++.|+..+.++++.+.+++++++|+.+++++++++..+|.|++.++ + +.++
T Consensus 396 ~~~k~~~~~--~~---------~-~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~ 463 (673)
T PRK00133 396 FINKRFDGK--LP---------D-ALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQ 463 (673)
T ss_pred HHHHhcCCC--CC---------C-CcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcC
Confidence 988753221 11 1 2347789999999999999999999999999999999999999999884 3 3222
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcCC
Q psy15414 1035 AEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNV 1096 (1458)
Q Consensus 1035 ~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~ 1096 (1458)
+ ..++ .++..++..+++.+.+ .|+|+||...+.+...+|+
T Consensus 464 -~-------~~~~---~~~l~~~~~~l~~l~~-----------lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 464 -D-------GERL---QAVCSVGLNLFRALAI-----------YLKPVLPELAERAEAFLNL 503 (673)
T ss_pred -C-------HHHH---HHHHHHHHHHHHHHHH-----------HhhChhchHHHHHHHHhCC
Confidence 1 1222 3344444444444444 5555555555555555554
No 35
>PLN02224 methionine-tRNA ligase
Probab=99.95 E-value=3.2e-26 Score=286.46 Aligned_cols=385 Identities=15% Similarity=0.164 Sum_probs=265.1
Q ss_pred CCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhH
Q psy15414 601 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 680 (1458)
Q Consensus 601 ~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~ 680 (1458)
+++++++|.-.=|+|+|++||||+|+++++|+|+|+++..||+|..+.+++|+|.+|..-+... +
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~--------g------- 130 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAAN--------G------- 130 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHc--------C-------
Confidence 4677788888889999999999999999999999999999999999999999998886422100 0
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHH
Q psy15414 681 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQL 757 (1458)
Q Consensus 681 l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~v 757 (1458)
.+| +.+|+.+...|...+++|||+++. ..+..|...++++
T Consensus 131 -------------------------------~~p------~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~~ 173 (616)
T PLN02224 131 -------------------------------RNP------PEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEF 173 (616)
T ss_pred -------------------------------CCh------HHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHHH
Confidence 001 124555667889999999997753 2234578899999
Q ss_pred HHHHHHcCCeEeeC--CcEEEEc----CCC-----------C--------------------------------------
Q psy15414 758 VPYLEKKGLLELDD--GRKIMWG----EDR-----------G-------------------------------------- 782 (1458)
Q Consensus 758 i~~L~~kG~~ye~d--Ga~~~~~----d~~-----------d-------------------------------------- 782 (1458)
+.+|.++|++|+.+ |.+|..+ +.. +
T Consensus 174 f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~ 253 (616)
T PLN02224 174 YARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYR 253 (616)
T ss_pred HHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHH
Confidence 99999999999753 3333210 000 0
Q ss_pred ----------C-CCcEEEcC-----------CCCccCCCcc--hHHHH---HHh--------hhcCCCeEEEEeeCCccc
Q psy15414 783 ----------S-IPMTIVKS-----------DGGFTYDTSD--LAAIR---QRI--------EEEKADWIVYVTDLGQGV 827 (1458)
Q Consensus 783 ----------~-~~~vL~ks-----------DGt~tY~trD--iA~~~---~k~--------~~~~~d~iIyVvg~dq~~ 827 (1458)
+ .|+-+-|. ++...|..=| +.|.- +-. ..+.....++|+|.|...
T Consensus 254 ~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~ 333 (616)
T PLN02224 254 LNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILR 333 (616)
T ss_pred HHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccc
Confidence 0 01111110 1222333222 12211 000 001123356777777554
Q ss_pred cHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHH
Q psy15414 828 HFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSE 906 (1458)
Q Consensus 828 hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~ 906 (1458)
+...++ +++.++|+..| ..+..++| ++ .+|+|||||+||+|++.|++++++
T Consensus 334 fH~i~wpa~l~~~g~~~P--~~i~~~g~--l~-~eG~KMSKS~GN~i~p~e~l~~yg----------------------- 385 (616)
T PLN02224 334 FHAVYWPAMLMSAGLELP--KMVFGHGF--LT-KDGMKMGKSLGNTLEPFELVQKFG----------------------- 385 (616)
T ss_pred cHHHHHHHHHHHCCCCCC--cEEEeccc--Ee-cCCccccccCCccCCHHHHHHHcC-----------------------
Confidence 333333 56667787433 45555555 43 489999999999999999999874
Q ss_pred HHHhhhhhheeeeeecCCC-CCccccchhhHHh-hhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHH
Q psy15414 907 AQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKE 984 (1458)
Q Consensus 907 ~ad~v~~~alRy~lLs~~~-~~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e 984 (1458)
.+++|||+++..+ ..|.+|+|+.+.+ .|++..+-+++.+.|+.+++.+..... ++. .... .+.+
T Consensus 386 ------aD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~--~~~-----~~~~-~~~d 451 (616)
T PLN02224 386 ------PDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCEST--LVE-----DSTV-AAEG 451 (616)
T ss_pred ------cHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--CCC-----cccc-cccc
Confidence 2469999999877 7999999999876 477777777888899999988763221 111 0111 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhc-cc-cccccccccccchhHHHHHHHHHHHHHHHHhh
Q psy15414 985 FALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC-YC-IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1062 (1458)
Q Consensus 985 ~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~-~v-L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~ 1062 (1458)
..|+..+.+..+.+.+++++++++.++..+++++...|.|++.+ |+ |.++++ ....++ .++..++.++|+
T Consensus 452 ~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~l~k~~~-----~~~~~~---~~~l~~l~e~lr 523 (616)
T PLN02224 452 VPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGG-----VSAEEA---AKDLVIILEVMR 523 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchhhhcccc-----ccHHHH---HHHHHHHHHHHH
Confidence 56888899999999999999999999999999999999999987 43 434321 012232 445556777788
Q ss_pred hcccccchhhHHhhccCCcchhhhHHHhhhhcCCCc
Q psy15414 1063 ILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVPV 1098 (1458)
Q Consensus 1063 LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~~ 1098 (1458)
++.+ .|+|++|...+.+++.||++.
T Consensus 524 ~~a~-----------LLaPf~P~~Ae~I~~~Lg~~~ 548 (616)
T PLN02224 524 VIAV-----------ALSPIAPCLSLRIYSQLGYSE 548 (616)
T ss_pred HHHH-----------HHhccccHHHHHHHHHhCCCc
Confidence 8877 889999999999999999754
No 36
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=7.6e-26 Score=289.58 Aligned_cols=379 Identities=15% Similarity=0.135 Sum_probs=254.6
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
+++.|-..=|+|+|++||||+|+.++.|+++|+++..||+|..+...+|+|..|..-+..
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-------------------- 63 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-------------------- 63 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH--------------------
Confidence 467888888999999999999999999999999999999999999999999866431110
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--c-cccccchhHHHHHHH
Q psy15414 684 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--R-GESFYQKHMEQLVPY 760 (1458)
Q Consensus 684 iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~-geS~~~~~v~~vi~~ 760 (1458)
+..+ .+.+++.+.+.|+++|++|||+|+. + .+..|...++++++.
T Consensus 64 --------------------------~g~~------~~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~ 111 (648)
T PRK12267 64 --------------------------AGKT------PQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEK 111 (648)
T ss_pred --------------------------cCCC------HHHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHHH
Confidence 0011 2246778889999999999998753 2 222467789999999
Q ss_pred HHHcCCeEeeC--CcEEEE----cCCC---C-------CCCcE-------------------------------------
Q psy15414 761 LEKKGLLELDD--GRKIMW----GEDR---G-------SIPMT------------------------------------- 787 (1458)
Q Consensus 761 L~~kG~~ye~d--Ga~~~~----~d~~---d-------~~~~v------------------------------------- 787 (1458)
|.++|++|..+ |.+|.. ..+. + |.|.+
T Consensus 112 L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~ 191 (648)
T PRK12267 112 LYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNE 191 (648)
T ss_pred HHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHH
Confidence 99999999763 433321 0000 0 00000
Q ss_pred --------------EEcC-----------CCCccCCCcc--hHHHH---H------HhhhcCCCeEEEEeeCCccccHHH
Q psy15414 788 --------------IVKS-----------DGGFTYDTSD--LAAIR---Q------RIEEEKADWIVYVTDLGQGVHFRL 831 (1458)
Q Consensus 788 --------------L~ks-----------DGt~tY~trD--iA~~~---~------k~~~~~~d~iIyVvg~dq~~hf~~ 831 (1458)
+-|. ++...|..=| ++|.. | .++. -....+++.|.|+.....-
T Consensus 192 ~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~-~wp~~~~~~GkDii~fH~i 270 (648)
T PRK12267 192 MINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKK-FWPADVHLVGKDILRFHAI 270 (648)
T ss_pred HHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHh-hcccceEEEeeeecchhHH
Confidence 0110 0111222111 11110 0 0000 0012355566665542222
Q ss_pred HH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHh
Q psy15414 832 LE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 910 (1458)
Q Consensus 832 l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~ 910 (1458)
++ +++.++|+..| ..+. .+|+++. +|+|||||+||+|++.|+++.++
T Consensus 271 ~wpa~l~~~~~~~p--~~v~--~hg~l~~-eg~KMSKS~GN~i~p~d~l~~yg--------------------------- 318 (648)
T PRK12267 271 YWPIMLMALGLPLP--KKVF--AHGWWLM-KDGKMSKSKGNVVDPEELVDRYG--------------------------- 318 (648)
T ss_pred HHHHHHHhCCCCCC--cEEE--ecceEEE-CCceecccCCcccCHHHHHHHcC---------------------------
Confidence 23 66777887433 2333 3455665 68999999999999999999764
Q ss_pred hhhhheeeeeecCCC-CCccccchhhHHh-hhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHH
Q psy15414 911 VAYGCIKYADLSHNR-NLDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALA 988 (1458)
Q Consensus 911 v~~~alRy~lLs~~~-~~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll 988 (1458)
.+++||++++..+ ..|.+|+|+.+.+ .|++..+-+.+..+|+.+++.+..... +|. ...+ .+.++.++
T Consensus 319 --aD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~--~p~-----~~~~-~~~D~~ll 388 (648)
T PRK12267 319 --LDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGE--IPA-----PGNV-TEFDEELI 388 (648)
T ss_pred --CcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc--CCC-----CCCC-chhhHHHH
Confidence 2469999998755 8999999999877 477777778888899999988753221 221 0112 24567799
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc-c-cccccccccccchhHHHHHHHHHHHHHHHHhhhccc
Q psy15414 989 KTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY-C-IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066 (1458)
Q Consensus 989 ~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~-v-L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI 1066 (1458)
..+..+.+.+.+++++++++.++..+++++...|.|++.++ + +.+++. ...|+ .++..++.++|+.+.+
T Consensus 389 ~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~~~~~~~------~~~~~---~~~l~~~~~~l~~~~~ 459 (648)
T PRK12267 389 ALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWVLAKDEG------KKERL---ATVMYHLAESLRKVAV 459 (648)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChhhhcCcc------cHHHH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999874 3 323210 12333 5566666667776666
Q ss_pred ccchhhHHhhccCCcchhhhHHHhhhhcCCC
Q psy15414 1067 RTAIAEEEKKQGISSSISSQTKGAAKKMNVP 1097 (1458)
Q Consensus 1067 ~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~ 1097 (1458)
.|+|++|...+.+.+.+|++
T Consensus 460 -----------lL~P~~P~~ae~i~~~Lg~~ 479 (648)
T PRK12267 460 -----------LLSPFMPETSKKIFEQLGLE 479 (648)
T ss_pred -----------HHhCccchHHHHHHHHcCCC
Confidence 66777777777777777653
No 37
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.94 E-value=8.1e-25 Score=281.31 Aligned_cols=383 Identities=14% Similarity=0.125 Sum_probs=258.7
Q ss_pred CceEEEEeeCCccCCccccchhhHH-HHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRST-IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsa-iIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
.++++|-..=|+|+|++||||++++ +..|+++|+++..|++|..+...+++|+.+..-+...
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~----------------- 78 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEE----------------- 78 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHc-----------------
Confidence 3478999999999999999999976 5589999999999999999999999999875322100
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecc---cccccchhHHHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLV 758 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~---geS~~~~~v~~vi 758 (1458)
.-+| +.+++.+.+.|++.|++|||+|+.. .+..|...+++++
T Consensus 79 -----------------------------g~~p------~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f 123 (801)
T PLN02610 79 -----------------------------NCTP------KEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIF 123 (801)
T ss_pred -----------------------------CCCH------HHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHH
Confidence 0011 2356667788999999999987642 2234778999999
Q ss_pred HHHHHcCCeEeeC--CcEEEE-------------------------cCCCC-------------------C---------
Q psy15414 759 PYLEKKGLLELDD--GRKIMW-------------------------GEDRG-------------------S--------- 783 (1458)
Q Consensus 759 ~~L~~kG~~ye~d--Ga~~~~-------------------------~d~~d-------------------~--------- 783 (1458)
.+|.++|++|... |.+|.. ++.++ |
T Consensus 124 ~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~ 203 (801)
T PLN02610 124 KKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTD 203 (801)
T ss_pred HHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEEcc
Confidence 9999999998642 222210 00000 0
Q ss_pred ------------------------------------------CCcEEEc---------C---CCCccCCCcc--hHHHH-
Q psy15414 784 ------------------------------------------IPMTIVK---------S---DGGFTYDTSD--LAAIR- 806 (1458)
Q Consensus 784 ------------------------------------------~~~vL~k---------s---DGt~tY~trD--iA~~~- 806 (1458)
.++-+-| - +|...|..-| +.|.-
T Consensus 204 ~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~ 283 (801)
T PLN02610 204 HLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSI 283 (801)
T ss_pred eEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHH
Confidence 0000000 0 1233444333 22211
Q ss_pred ---H--Hhhh-cCC---CeEEEEeeCCccccHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchH
Q psy15414 807 ---Q--RIEE-EKA---DWIVYVTDLGQGVHFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 876 (1458)
Q Consensus 807 ---~--k~~~-~~~---d~iIyVvg~dq~~hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~ 876 (1458)
| .+.. |.. .++++++|.|-..++.-++ ++|.++|...+....+..+ |+++ .+|+|||||+||+|++.
T Consensus 284 ~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~--g~l~-~eG~KMSKS~GNvV~p~ 360 (801)
T PLN02610 284 TACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVT--EYLN-YEGGKFSKSKGVGVFGN 360 (801)
T ss_pred HhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEec--cCEe-cCCceecCcCCcccCHH
Confidence 0 0000 111 2457777777544443444 6777788421111344344 4444 48899999999999999
Q ss_pred HHHHH-HHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCccccchhhHHhh-hcCcHHHHHHHHHH
Q psy15414 877 ELLDE-GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLDD-RGNTAVYLLYAYTR 953 (1458)
Q Consensus 877 DLLde-~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~~Fd~d~~l~~-n~n~g~ylqYa~aR 953 (1458)
++++. ++ .+++|||+++..+ .+|.+|||+.+.+. |++..+-+.+..+|
T Consensus 361 ~~i~~~yg-----------------------------~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R 411 (801)
T PLN02610 361 DAKDTNIP-----------------------------VEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINR 411 (801)
T ss_pred HHHhccCC-----------------------------chHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99884 53 3569999999877 79999999999984 88888888888899
Q ss_pred HHHHHHH----hCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhc-
Q psy15414 954 IASIART----AGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC- 1028 (1458)
Q Consensus 954 i~SIlrK----~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~- 1028 (1458)
+.+++.+ +... .+|.. ..... .+.+..|+..+.+..+.+.+++++++++.+++.+++++...|.|++..
T Consensus 412 ~~~~i~~~~~k~~~g--~vp~~---~~~~~-~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~k 485 (801)
T PLN02610 412 VLSFIAKPPGAGYGS--VIPDA---PGAES-HPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 485 (801)
T ss_pred HHHHHHhhhhhccCC--cCCCc---ccccc-chhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999984 3222 12210 00011 234567889999999999999999999999999999999999999987
Q ss_pred cc-cccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcCCC
Q psy15414 1029 YC-IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVP 1097 (1458)
Q Consensus 1029 ~v-L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~ 1097 (1458)
|+ |.+++ ..++ .++..++.++|+++.+ .|+|+||...+.++..||++
T Consensus 486 PW~L~k~d--------~~~l---~~vl~~~le~lr~la~-----------LL~PfmP~~aeeI~~~Lg~~ 533 (801)
T PLN02610 486 FWKLYKED--------KPSC---AIVVKTSVGLVYLLAC-----------LLEPFMPSFSKEVLKQLNLP 533 (801)
T ss_pred chhhhCCC--------HHHH---HHHHHHHHHHHHHHHH-----------HHhCcccHHHHHHHHHhCCC
Confidence 43 44431 1233 4566666677777776 67777777777777777754
No 38
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.94 E-value=1.5e-24 Score=273.98 Aligned_cols=331 Identities=14% Similarity=0.161 Sum_probs=227.4
Q ss_pred ceEEEEeeCCccCCccccchhhHH-HHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRST-IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsa-iIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
++++|.-.-|+|+|++||||+|+. ++.|+++|+++..|++|..+.+++|+|..+..-+...
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~------------------ 64 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE------------------ 64 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHc------------------
Confidence 468888899999999999999999 9999999999999999999999999998765322100
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--c-cccccchhHHHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--R-GESFYQKHMEQLVP 759 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~-geS~~~~~v~~vi~ 759 (1458)
..+ ++.+++.+.+.|.+.+++|||.++. + .+..|.+.+.+++.
T Consensus 65 ----------------------------g~~------~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~ 110 (556)
T PRK12268 65 ----------------------------GVT------PQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFL 110 (556)
T ss_pred ----------------------------CCC------HHHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHHH
Confidence 001 1235666778899999999997653 1 12257889999999
Q ss_pred HHHHcCCeEeeCCcEEEEc-----------CC----------------------------------CC------------
Q psy15414 760 YLEKKGLLELDDGRKIMWG-----------ED----------------------------------RG------------ 782 (1458)
Q Consensus 760 ~L~~kG~~ye~dGa~~~~~-----------d~----------------------------------~d------------ 782 (1458)
+|.++|++|+.++..++.. .+ ++
T Consensus 111 ~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF 190 (556)
T PRK12268 111 KLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFF 190 (556)
T ss_pred HHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceEE
Confidence 9999999997655432210 00 00
Q ss_pred ----------------------------------C-CCcEE-----------E-cCCCCccCCCcc--hHHH---HHHhh
Q psy15414 783 ----------------------------------S-IPMTI-----------V-KSDGGFTYDTSD--LAAI---RQRIE 810 (1458)
Q Consensus 783 ----------------------------------~-~~~vL-----------~-ksDGt~tY~trD--iA~~---~~k~~ 810 (1458)
+ .+..+ + ..+|.+.|..-| ++|. .....
T Consensus 191 ~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~ 270 (556)
T PRK12268 191 LDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAE 270 (556)
T ss_pred EEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHH
Confidence 0 00000 0 012223333223 1111 00000
Q ss_pred ----------hc--CCCeEEEEeeCCccccHHHHH-HHHHHcC--CCCCCcceEEEEEeEEEecCCCcccccccCCccch
Q psy15414 811 ----------EE--KADWIVYVTDLGQGVHFRLLE-ECAKKAG--ILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKL 875 (1458)
Q Consensus 811 ----------~~--~~d~iIyVvg~dq~~hf~~l~-~il~alG--~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l 875 (1458)
-+ .-...+.|.|.|+......++ +++.+.| +..| . .|+.+|+|+. +|+|||||+||+|++
T Consensus 271 ~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P--~--~v~~~G~v~~-~G~KMSKS~GN~I~p 345 (556)
T PRK12268 271 RTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLP--D--EIVSSEYLTL-EGGKFSKSRGWGIWV 345 (556)
T ss_pred hcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCC--C--EeeccCCEEE-CCeeeccCCCcccCH
Confidence 01 002357777777654333333 6666777 4333 2 4555666765 799999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCccccchhhHHhh-hcCcHHHHHHHHHH
Q psy15414 876 SELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLDD-RGNTAVYLLYAYTR 953 (1458)
Q Consensus 876 ~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~~Fd~d~~l~~-n~n~g~ylqYa~aR 953 (1458)
.|++++++ .+++||++++..+ ..|++||++.+... +.+..+.+.+..+|
T Consensus 346 ~dli~~yG-----------------------------aDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r 396 (556)
T PRK12268 346 DDALERYP-----------------------------PDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNR 396 (556)
T ss_pred HHHHHHcC-----------------------------cHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHH
Confidence 99999874 2469999998876 69999999997653 44555444454579
Q ss_pred HHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc
Q psy15414 954 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1029 (1458)
Q Consensus 954 i~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~ 1029 (1458)
+.+++++..... ++ ...+ .+.++.|+..+..+...+.+++++++++.++.++++++..+|.|++..+
T Consensus 397 ~~~~~~~~~~~~--~~------~~~~-~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~k 463 (556)
T PRK12268 397 VLSFIEKYFGGI--VP------PGEL-GDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKA 463 (556)
T ss_pred HHHHHHHhcCCc--CC------CCcC-CcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999988753221 11 1112 3567889999999999999999999999999999999999999998764
No 39
>KOG0436|consensus
Probab=99.91 E-value=7.7e-23 Score=231.37 Aligned_cols=376 Identities=15% Similarity=0.163 Sum_probs=256.2
Q ss_pred ccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhccC
Q psy15414 614 NIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 693 (1458)
Q Consensus 614 Np~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~ 693 (1458)
.|+-+.|+||+.|+++.|+++|.-+..|-.|...-..+.+|..|...++.- |- +|.
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn--------G~-~P~--------------- 104 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN--------GR-NPP--------------- 104 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc--------CC-ChH---------------
Confidence 467789999999999999999999999999999999999998775433211 10 121
Q ss_pred CcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE---EecccccccchhHHHHHHHHHHcCCeEee
Q psy15414 694 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT---LTERGESFYQKHMEQLVPYLEKKGLLELD 770 (1458)
Q Consensus 694 ~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~---f~~~geS~~~~~v~~vi~~L~~kG~~ye~ 770 (1458)
++||..-+.|.+.+..+||. |....+..|...++++.+.+.++|.+|..
T Consensus 105 ----------------------------e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g 156 (578)
T KOG0436|consen 105 ----------------------------ELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRG 156 (578)
T ss_pred ----------------------------HHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeee
Confidence 24555556677777788884 44344556888899999999999999976
Q ss_pred --CCcEEEEcCC------------CC--------CCCcEEEcCCCCccCCCc------chHHHHH---------------
Q psy15414 771 --DGRKIMWGED------------RG--------SIPMTIVKSDGGFTYDTS------DLAAIRQ--------------- 807 (1458)
Q Consensus 771 --dGa~~~~~d~------------~d--------~~~~vL~ksDGt~tY~tr------DiA~~~~--------------- 807 (1458)
+|.+|+..+. .+ |.| |++++. ..|+-+ -+--|+.
T Consensus 157 ~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~-vv~~kE--~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qV 233 (578)
T KOG0436|consen 157 DYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNP-VVWRKE--DNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQV 233 (578)
T ss_pred cccceEeccccccCCHHHHhcCCCCCCceeeeccCCc-eeEecc--cceeeeHHhhhhHHHHHHhcCCCccCchHHHHHH
Confidence 5777653211 00 112 233332 122221 0000000
Q ss_pred --Hhh---------------hcC------CCeEEEEeeCCccccHH----------------------------------
Q psy15414 808 --RIE---------------EEK------ADWIVYVTDLGQGVHFR---------------------------------- 830 (1458)
Q Consensus 808 --k~~---------------~~~------~d~iIyVvg~dq~~hf~---------------------------------- 830 (1458)
.++ .|| -...||||-..--+|..
T Consensus 234 l~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFH 313 (578)
T KOG0436|consen 234 LSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFH 313 (578)
T ss_pred HHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhh
Confidence 000 011 12355555443322222
Q ss_pred HH-H-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHH
Q psy15414 831 LL-E-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 908 (1458)
Q Consensus 831 ~l-~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~a 908 (1458)
.+ + +.|.++|...| ..+..++| . +.+|.|||||+||||+|.++++.++
T Consensus 314 avYWPafLmaAGlplP--~~I~vHgh--w-t~ngmKMsKSLGNvvdP~~l~~kyg------------------------- 363 (578)
T KOG0436|consen 314 AVYWPAFLMAAGLPLP--KMIFVHGH--W-TKNGMKMSKSLGNVVDPFELVQKYG------------------------- 363 (578)
T ss_pred hhhhHHHHHhcCCCCc--cEEEEeee--e-eecceecchhhccccCHHHHHHHhC-------------------------
Confidence 22 1 56777887544 34434444 2 2488999999999999999999884
Q ss_pred HhhhhhheeeeeecCCC-CCccccchhhHHhh-hcCcHHHHHHHHHHHHH--HHHHhCCCcchhhhhccCCCCCCCCHHH
Q psy15414 909 QAVAYGCIKYADLSHNR-NLDYVFSFDKMLDD-RGNTAVYLLYAYTRIAS--IARTAGINSEDLRVAAQSTPVSLEHEKE 984 (1458)
Q Consensus 909 d~v~~~alRy~lLs~~~-~~d~~Fd~d~~l~~-n~n~g~ylqYa~aRi~S--IlrK~~~~~~~i~~~~~~~~~~l~~~~e 984 (1458)
++++|||+|+... +.|.+|+.+++... |...++-+++..+|+++ +.-+........+ ......+.
T Consensus 364 ----vD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~-------s~~v~ae~ 432 (578)
T KOG0436|consen 364 ----VDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVD-------SPTVAAEG 432 (578)
T ss_pred ----ccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccC-------Ccchhhcc
Confidence 4579999999877 89999999999884 67888888888899998 4333211110000 11111234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhc-cc-cccccccccccchhHHHHHHHHHHHHHHHHhh
Q psy15414 985 FALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC-YC-IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1062 (1458)
Q Consensus 985 ~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~-~v-L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~ 1062 (1458)
..|...+...|++..+.++.+....+|+.++++.+..|.|.+.. |+ |.++.+ ....-| ..+..++-++|+
T Consensus 433 ~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~dsq-----~~~~~l---a~~~~~~le~lr 504 (578)
T KOG0436|consen 433 EPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFKDSQ-----VSAEEL---AKVLHIILEVLR 504 (578)
T ss_pred chHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhcCCceeccccC-----ccHHHH---HHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999887 44 444322 122223 446667778999
Q ss_pred hcccccchhhHHhhccCCcchhhhHHHhhhhcCCCccccccc
Q psy15414 1063 ILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVPVRDRMSV 1104 (1458)
Q Consensus 1063 LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~~~~p~~l 1104 (1458)
++|| .|||++|.-....|+++|++...+.-.
T Consensus 505 v~~i-----------llqpv~Psls~~llsqlgvsk~qrsl~ 535 (578)
T KOG0436|consen 505 VIGI-----------LLQPVAPSLSLRLLSQLGVSKDQRSLI 535 (578)
T ss_pred HHHH-----------HHccccchhHHHHHHHcCCChhhcccc
Confidence 9999 999999999999999999988876444
No 40
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.90 E-value=1.7e-23 Score=221.51 Aligned_cols=155 Identities=33% Similarity=0.534 Sum_probs=135.8
Q ss_pred hhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHH
Q psy15414 910 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAK 989 (1458)
Q Consensus 910 ~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~ 989 (1458)
.+|.+|+||++|+..+.++++|||+++++++||+|+|+||+|+|++||++|++...... ...+...+.++.|++|+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~---~~~~~~ll~~~~E~~L~~ 78 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAE---ADADLSLLPEPDERDLIL 78 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccc---cccchhhcCCHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999986311000 011223456789999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccc
Q psy15414 990 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTA 1069 (1458)
Q Consensus 990 ~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~ 1069 (1458)
.+..||+.+..++.+.+|+.++.|+++|+..||+||++++|+.++. +++..||.|+.++++++.+||.+|||+||
T Consensus 79 ~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V~~~~~-----~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 79 LLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGAEE-----ELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcccCCCH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999885432 46889999999999999999999999999
Q ss_pred hhh
Q psy15414 1070 IAE 1072 (1458)
Q Consensus 1070 e~m 1072 (1458)
++|
T Consensus 154 ~~m 156 (156)
T cd07956 154 ERM 156 (156)
T ss_pred ccC
Confidence 988
No 41
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.84 E-value=1.1e-20 Score=209.08 Aligned_cols=192 Identities=19% Similarity=0.210 Sum_probs=148.0
Q ss_pred CCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
.++++.++.|+|+|++++||||+|+.++.|+++|+++..||+|..+.+++|+|..+...+..
T Consensus 17 ~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~------------------ 78 (213)
T cd00672 17 NPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE------------------ 78 (213)
T ss_pred CCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH------------------
Confidence 45788999999999999999999999999999999999999999999999999876432210
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEE-ecccccccchhHHHHHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TERGESFYQKHMEQLVPY 760 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f-~~~geS~~~~~v~~vi~~ 760 (1458)
+..+ |+.+++...+.|.+.+++|||++ +...
T Consensus 79 ----------------------------~g~~------p~e~~~~~~~~f~~~~~~l~i~~~d~~~-------------- 110 (213)
T cd00672 79 ----------------------------EGLS------WKEVADYYTKEFFEDMKALNVLPPDVVP-------------- 110 (213)
T ss_pred ----------------------------cCCC------HHHHHHHHHHHHHHHHHHcCCCCCCcce--------------
Confidence 0011 34567777888999999999865 2110
Q ss_pred HHHcCCeEeeCCcEEEEcCCCCCCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHH-HHH--
Q psy15414 761 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE-CAK-- 837 (1458)
Q Consensus 761 L~~kG~~ye~dGa~~~~~d~~d~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~-il~-- 837 (1458)
++ |.....|.+.. + ++..++|++++.++.|+++.. +++
T Consensus 111 -------------------------rt---------Wh~ec~am~~~-~----lg~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 111 -------------------------RV---------WHIECSAMAMK-Y----LGETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred -------------------------ee---------hhHHHHHHHHH-H----cCCCccEEeecCCCCcChHHHHHHHHH
Confidence 11 55554444332 2 345689999999999999973 333
Q ss_pred H-cCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhhe
Q psy15414 838 K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 916 (1458)
Q Consensus 838 a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~al 916 (1458)
+ .|- |++..|.|.++ |. .+|+|||||+||+|+++|++++++ -+++
T Consensus 152 a~~g~--~~~~~~~h~~~--v~-~~g~KMSKs~Gn~v~~~dll~~~~-----------------------------~da~ 197 (213)
T cd00672 152 AATGK--PFARYWLHTGH--LT-IDGEKMSKSLGNFITVRDALKKYD-----------------------------PEVL 197 (213)
T ss_pred HHhCC--CCCcEEEEEEE--Ee-ccCcchhhcCCCccCHHHHHHHcC-----------------------------HHHH
Confidence 3 353 67788999966 44 378899999999999999999763 1469
Q ss_pred eeeeecCCCCCccccc
Q psy15414 917 KYADLSHNRNLDYVFS 932 (1458)
Q Consensus 917 Ry~lLs~~~~~d~~Fd 932 (1458)
||++++.+++++++||
T Consensus 198 R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 198 RLALLSSHYRSPLDFS 213 (213)
T ss_pred HHHHHhCCcCCCCCCC
Confidence 9999999999999986
No 42
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.84 E-value=3e-20 Score=218.50 Aligned_cols=255 Identities=17% Similarity=0.135 Sum_probs=171.6
Q ss_pred EEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHH
Q psy15414 606 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 685 (1458)
Q Consensus 606 V~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy 685 (1458)
.+|...-|||+|++||||+|+.++.|+++|.++..||+|..+..++|+|..+...+.... .......++
T Consensus 2 ~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~----~~~~~~~~~------- 70 (312)
T cd00668 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG----GRKKKTIWI------- 70 (312)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc----CcccccccH-------
Confidence 577888999999999999999999999999999999999999999999987765432211 000000010
Q ss_pred HHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-----ccccccchhHHHHHHH
Q psy15414 686 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQLVPY 760 (1458)
Q Consensus 686 ~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-----~geS~~~~~v~~vi~~ 760 (1458)
.+| .+.++.+++.+.+.|.+++++|||++++ ..+..|.+.+.+++++
T Consensus 71 ----------~~~------------------~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~ 122 (312)
T cd00668 71 ----------EEF------------------REDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSR 122 (312)
T ss_pred ----------HHH------------------HHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHH
Confidence 011 2234556788899999999999998862 1233577899999999
Q ss_pred HHHcCCeEeeCCc------EEEEcCC------------C---------------CCCCcEEEcCC--C-----CccCCCc
Q psy15414 761 LEKKGLLELDDGR------KIMWGED------------R---------------GSIPMTIVKSD--G-----GFTYDTS 800 (1458)
Q Consensus 761 L~~kG~~ye~dGa------~~~~~d~------------~---------------d~~~~vL~ksD--G-----t~tY~tr 800 (1458)
|.++|++|+..+. +++.... . +..+..|.|.- | -.+|..-
T Consensus 123 L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~Wf 202 (312)
T cd00668 123 LYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDVWF 202 (312)
T ss_pred HHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccchh
Confidence 9999999995543 3332110 0 00233444421 2 2222211
Q ss_pred c--hHHHHH---Hhhh----cCCCeEEEEeeCCcc-ccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccC
Q psy15414 801 D--LAAIRQ---RIEE----EKADWIVYVTDLGQG-VHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSG 870 (1458)
Q Consensus 801 D--iA~~~~---k~~~----~~~d~iIyVvg~dq~-~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~G 870 (1458)
| +++... .... .-....|++.|.||. .|+..+.+++.+++...+... |..+|+|+..+|+|||||+|
T Consensus 203 ds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~g~KmSKS~g 279 (312)
T cd00668 203 DSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKN---LLVHGFVLDEGGQKMSKSKG 279 (312)
T ss_pred hccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcce---eEECcEEEcCCCccccccCC
Confidence 2 222211 0000 001245999999998 888888888888875323433 33346688777799999999
Q ss_pred CccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCcccc
Q psy15414 871 DTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYVF 931 (1458)
Q Consensus 871 nvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~~F 931 (1458)
|+|+++|++++++ .+++||++++.++ .+|.+|
T Consensus 280 n~v~~~d~~~~~~-----------------------------~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 280 NVIDPSDVVEKYG-----------------------------ADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred CcCCHHHHHHHcC-----------------------------cHHHHHHHHhcCCccCCCCC
Confidence 9999999999863 1469999999875 677655
No 43
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.82 E-value=6.1e-20 Score=215.71 Aligned_cols=241 Identities=18% Similarity=0.151 Sum_probs=164.6
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
|++|-..=|+|+|++||||+|+.+++|+++|.++..|++|..+.+++|+|..+...+... +
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~--------g----------- 61 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI--------G----------- 61 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc--------C-----------
Confidence 467888889999999999999999999999999999999999999999998764322110 0
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--c---cccccchhHHHHHH
Q psy15414 685 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--R---GESFYQKHMEQLVP 759 (1458)
Q Consensus 685 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~---geS~~~~~v~~vi~ 759 (1458)
.+ .+.+++.+.+.|.+.+++|||+++. . ....|...++.++.
T Consensus 62 ---------------------------~~------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~ 108 (314)
T cd00812 62 ---------------------------RD------PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFL 108 (314)
T ss_pred ---------------------------CC------HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHH
Confidence 01 2345677788899999999998763 1 12235667888888
Q ss_pred HHHHcCCeEeeCCcEEEE---------c--CC-CC---------C-CCc----------EEEc--CCCCc------cCCC
Q psy15414 760 YLEKKGLLELDDGRKIMW---------G--ED-RG---------S-IPM----------TIVK--SDGGF------TYDT 799 (1458)
Q Consensus 760 ~L~~kG~~ye~dGa~~~~---------~--d~-~d---------~-~~~----------vL~k--sDGt~------tY~t 799 (1458)
.|.++|++|+.++.+++. . +. ++ . .|. -+-| .=|.+ .|..
T Consensus 109 ~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~isR~~~wGipvP~~~~i~~w 188 (314)
T cd00812 109 KLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIGCSRQRYWGTPIPWTDTMESL 188 (314)
T ss_pred HHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHheeeeecCCcCCcCcccccccc
Confidence 999999999988765431 1 00 00 0 000 0111 11222 1222
Q ss_pred cchH-----HH----------------HHHhhhcCCCeEEEEeeCCc---c-ccHHHHHHHHHHcCC---CCCCcceEEE
Q psy15414 800 SDLA-----AI----------------RQRIEEEKADWIVYVTDLGQ---G-VHFRLLEECAKKAGI---LNPNKTRMDF 851 (1458)
Q Consensus 800 rDiA-----~~----------------~~k~~~~~~d~iIyVvg~dq---~-~hf~~l~~il~alG~---~~~~~~~~~H 851 (1458)
.|-. |. ...+..+. .--|||+|.|| + .|+..+.+++..+|+ .. ..++.+
T Consensus 189 ~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~-p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~--~~~~~~ 265 (314)
T cd00812 189 SDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWY-PVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEP--PKGLIV 265 (314)
T ss_pred cccHHHHHHHHhcccccCcchhhhhhhHHHHHHhC-CCeeeecchhHHHHHHHHHHHHHHHHcCcccccccC--cHHhee
Confidence 2211 11 00111121 12399999998 4 455667788888885 32 234444
Q ss_pred EEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCcccc
Q psy15414 852 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVF 931 (1458)
Q Consensus 852 ~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~F 931 (1458)
+|+|+. +|+|||||+||+|+++|++++++ .+++||++++..+ ++++|
T Consensus 266 --~g~v~~-~g~KmSkS~Gn~v~~~dll~~~~-----------------------------~Da~R~~ll~~~~-~~~~f 312 (314)
T cd00812 266 --QGMVLL-EGEKMSKSKGNVVTPDEAIKKYG-----------------------------ADAARLYILFAAP-PDADF 312 (314)
T ss_pred --cceEec-CccccCCcCCCCCCHHHHHHHhC-----------------------------cHHHHHHHHhcCC-cCCCC
Confidence 455665 78999999999999999999863 2579999999988 99999
Q ss_pred ch
Q psy15414 932 SF 933 (1458)
Q Consensus 932 d~ 933 (1458)
||
T Consensus 313 ~~ 314 (314)
T cd00812 313 DW 314 (314)
T ss_pred CC
Confidence 97
No 44
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.82 E-value=1.6e-19 Score=212.96 Aligned_cols=241 Identities=18% Similarity=0.237 Sum_probs=165.7
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
++.|-..-|+|+|++||||+|+.++.|+++|.++..|++|..+..++|+|..+..-+..
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~--------------------- 59 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE--------------------- 59 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH---------------------
Confidence 35677788999999999999999999999999999999999999999999876532210
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHHHH
Q psy15414 685 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYL 761 (1458)
Q Consensus 685 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~~L 761 (1458)
+.-+ ++.+++.+.+.|+++|++|||.|+. ..++.|.+.+.+++++|
T Consensus 60 -------------------------~g~~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~L 108 (319)
T cd00814 60 -------------------------EGVT------PQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKL 108 (319)
T ss_pred -------------------------cCCC------HHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHHH
Confidence 0001 2346788899999999999998753 23445778899999999
Q ss_pred HHcCCeEeeC--CcEE-----------------EEcC-----------CCC------------------C-CCcEEEcC-
Q psy15414 762 EKKGLLELDD--GRKI-----------------MWGE-----------DRG------------------S-IPMTIVKS- 791 (1458)
Q Consensus 762 ~~kG~~ye~d--Ga~~-----------------~~~d-----------~~d------------------~-~~~vL~ks- 791 (1458)
.++|++|+.+ |.+| +... ... + .+..+-|.
T Consensus 109 ~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~ 188 (319)
T cd00814 109 YENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDL 188 (319)
T ss_pred HHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccC
Confidence 9999999764 3222 2111 000 0 01111111
Q ss_pred ----------CCCccCCCcc--hHHHH------HH-----hhhcCCCeEEEEeeCCccccHHHHH-HHHHHcCCCCCCcc
Q psy15414 792 ----------DGGFTYDTSD--LAAIR------QR-----IEEEKADWIVYVTDLGQGVHFRLLE-ECAKKAGILNPNKT 847 (1458)
Q Consensus 792 ----------DGt~tY~trD--iA~~~------~k-----~~~~~~d~iIyVvg~dq~~hf~~l~-~il~alG~~~~~~~ 847 (1458)
.|...|..-| ++|.- ++ .........|+|.|.|+..++..++ +++.++|+.. ..
T Consensus 189 ~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~~--~~ 266 (319)
T cd00814 189 FDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLPL--PT 266 (319)
T ss_pred cccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCCC--Cc
Confidence 1233343333 12210 00 0012335689999999877655555 6777788633 34
Q ss_pred eEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-C
Q psy15414 848 RMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-N 926 (1458)
Q Consensus 848 ~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~ 926 (1458)
.+.+++| ++. +|+|||||+||+|++.|++++++ .+++||++++..+ .
T Consensus 267 ~~~~~~~--~~~-~g~kmSkS~gn~i~~~~~l~~~~-----------------------------~d~~R~~l~~~~~~~ 314 (319)
T cd00814 267 RIVAHGY--LTV-EGKKMSKSRGNVVDPDDLLERYG-----------------------------ADALRYYLLRERPEG 314 (319)
T ss_pred Eeeeeee--EEE-CCeeecccCCcccCHHHHHHHcC-----------------------------chHHHHHHHhcCCCC
Confidence 6666666 554 68999999999999999999863 2468999999877 6
Q ss_pred Ccccc
Q psy15414 927 LDYVF 931 (1458)
Q Consensus 927 ~d~~F 931 (1458)
+|.+|
T Consensus 315 ~d~~f 319 (319)
T cd00814 315 KDSDF 319 (319)
T ss_pred CCCCC
Confidence 77766
No 45
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.82 E-value=7.8e-18 Score=220.62 Aligned_cols=129 Identities=22% Similarity=0.255 Sum_probs=96.7
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
+++..|...-|||+|++||||+++.+++|+++|+.+..||+|......+.+|..+...+.......+. .+
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~------~~---- 106 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKD------DI---- 106 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcc------cC----
Confidence 46799999999999999999999999999999999999999999999999999886544321100000 00
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc-----ccccchhHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 757 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g-----eS~~~~~v~~v 757 (1458)
..++|.+.+ +.+++.+.+.+.+.+++||+++++.. +..|...+..+
T Consensus 107 -----------~~~~f~~~~------------------~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~ 157 (800)
T PRK13208 107 -----------SREEFIELC------------------RELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKS 157 (800)
T ss_pred -----------CHHHHHHHH------------------HHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHH
Confidence 011222222 23466678889999999999887521 23466788999
Q ss_pred HHHHHHcCCeEee
Q psy15414 758 VPYLEKKGLLELD 770 (1458)
Q Consensus 758 i~~L~~kG~~ye~ 770 (1458)
+.+|.++|++|+.
T Consensus 158 f~~L~~~Gliy~~ 170 (800)
T PRK13208 158 FLDLYKKGLIYRA 170 (800)
T ss_pred HHHHHHCCCeeec
Confidence 9999999999853
No 46
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.78 E-value=1e-16 Score=211.58 Aligned_cols=184 Identities=11% Similarity=0.070 Sum_probs=123.8
Q ss_pred EEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCcc
Q psy15414 851 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDY 929 (1458)
Q Consensus 851 H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~ 929 (1458)
+..+|+|+..+|+|||||+||+|+|.|++++++ .+++||++++..+ .+|+
T Consensus 512 v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~yg-----------------------------aDalR~~l~~~~~~~~d~ 562 (861)
T TIGR00422 512 VYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYG-----------------------------ADALRFTLASLVTPGDDI 562 (861)
T ss_pred EEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhC-----------------------------hHHHHHHHHhCCCCCCCc
Confidence 555577888889999999999999999999874 2469999998877 8999
Q ss_pred ccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy15414 930 VFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH 1009 (1458)
Q Consensus 930 ~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~ 1009 (1458)
+||++.+... .+..+-+.+ ..|...+..+.. . .++. ....+ .+.++-++..+......+.+++++++++.
T Consensus 563 ~f~~~~~~~~-~~~~nkl~N-~~rf~~~~~~~~-~--~~~~----~~~~~-~~~D~wil~~l~~~~~~v~~~~e~~~f~~ 632 (861)
T TIGR00422 563 NFDWKRVESA-RNFLNKLWN-ASRFVLMNLSDD-L--ELSG----GEEKL-SLADRWILSKLNRTIKEVRKALDKYRFAE 632 (861)
T ss_pred eecHHHHHHH-HHHHHHHHH-HHHHHHhccccc-c--cccc----ccccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 9999997654 234444544 345544322111 0 0110 01112 34577789999999999999999999999
Q ss_pred HHHHHHHHH--HHHHhhhhhcc-ccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhh
Q psy15414 1010 LCEYLYDIS--TAFSEFYDNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQ 1086 (1458)
Q Consensus 1010 l~~yL~~LA--~~fN~fy~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~ 1086 (1458)
+++.+++++ ...|.|++..+ .+..+. ...+ .++..+|..+|+.+.+ .|+|+||..
T Consensus 633 A~~~l~~f~~~~~~n~Yie~~k~~~~~~~-------~~~~----~~~~~~l~~~l~~~~~-----------lL~Pf~P~i 690 (861)
T TIGR00422 633 AAKALYEFIWNDFCDWYIELVKYRLYNGN-------EAEK----KAARDTLYYVLDKALR-----------LLHPFMPFI 690 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHcCCC-------cHHH----HHHHHHHHHHHHHHHH-----------HHhhhhhHH
Confidence 999999996 77888888764 332211 1112 2344444454544433 556677766
Q ss_pred HHHhhhhcC
Q psy15414 1087 TKGAAKKMN 1095 (1458)
Q Consensus 1087 ~~~~l~~~g 1095 (1458)
.+.+...++
T Consensus 691 tEelw~~L~ 699 (861)
T TIGR00422 691 TEEIWQHFK 699 (861)
T ss_pred HHHHHHhCc
Confidence 666666554
No 47
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.77 E-value=9.7e-19 Score=182.56 Aligned_cols=143 Identities=23% Similarity=0.182 Sum_probs=117.4
Q ss_pred EEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHH
Q psy15414 608 VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKE 687 (1458)
Q Consensus 608 VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~ 687 (1458)
|++|+|||+|++||||+|+++++|+++|+|+..||+|..+++++|||.|++..+...
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 689999999999999999999999999999999999999999999999997532110
Q ss_pred hhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecccccccchhHHHHHHHHHHcCCe
Q psy15414 688 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 767 (1458)
Q Consensus 688 ~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~geS~~~~~v~~vi~~L~~kG~~ 767 (1458)
+ ..|+.+++.+.+.|.+.|+
T Consensus 58 ------------------------~-----~~~~~~~~~~~~~~~~~~~------------------------------- 77 (143)
T cd00802 58 ------------------------G-----ENAKAFVERWIERIKEDVE------------------------------- 77 (143)
T ss_pred ------------------------C-----CCHHHHHHHHHHHHHHHHH-------------------------------
Confidence 0 1256677777777877665
Q ss_pred EeeCCcEEEEcCCCCCCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcc
Q psy15414 768 ELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKT 847 (1458)
Q Consensus 768 ye~dGa~~~~~d~~d~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~ 847 (1458)
|.+.|+|...++...+ ..|++.|.||..|+++.+.+++++|.. .
T Consensus 78 -----------------------------y~~~~~a~~~~~~~~~---~~i~~~G~Dq~~h~~~~~~i~~~~~~~--~-- 121 (143)
T cd00802 78 -----------------------------YMFLQAADFLLLYETE---CDIHLGGSDQLGHIELGLELLKKAGGP--A-- 121 (143)
T ss_pred -----------------------------HHHHHHHHHHHHhhCC---cEEEEechhHHHHHHHHHHHHHHhCCC--C--
Confidence 8888888877765432 789999999999999999999999852 2
Q ss_pred eEEEEEeEEEecCCCccccccc
Q psy15414 848 RMDFVGFGVVLGEDRKKFKTRS 869 (1458)
Q Consensus 848 ~~~H~~fg~V~~~~G~KMSKR~ 869 (1458)
...|+.||+|++.+|+|||||+
T Consensus 122 ~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 122 RPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred CceEEEeCCeECCCCCcCCCCC
Confidence 2346667778888889999995
No 48
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.77 E-value=2.1e-16 Score=210.32 Aligned_cols=187 Identities=9% Similarity=0.072 Sum_probs=133.9
Q ss_pred EEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCC-CCCcc
Q psy15414 851 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN-RNLDY 929 (1458)
Q Consensus 851 H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~-~~~d~ 929 (1458)
.+.+|+|++.+|+|||||+||+|+|.|++++++ .+++||++++.. ..+|+
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yG-----------------------------aDalR~~L~~~~~~g~D~ 575 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYG-----------------------------ADALRFTLAALTAQGRDI 575 (1052)
T ss_pred eEecccEECCCCCCccCCCCCCCCHHHHHHHhC-----------------------------cHHHHHHHHhcCCCCCCC
Confidence 445577888899999999999999999999875 246999999865 48999
Q ss_pred ccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy15414 930 VFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH 1009 (1458)
Q Consensus 930 ~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~ 1009 (1458)
+||++.+...+ +..+-+.++ .|...+..+........+. ...+ .+.++.++..+..+...+.+++++++++.
T Consensus 576 ~fs~~~l~~~~-~f~nkl~N~-~R~~~~~~~~~~~~~~~~~-----~~~~-~~~D~wils~l~~~i~~v~~~~e~y~f~~ 647 (1052)
T PRK14900 576 KLAKERIEGYR-AFANKLWNA-SRFALMNLSGYQERGEDPA-----RLAR-TPADRWILARLQRAVNETVEALEAFRFND 647 (1052)
T ss_pred cccHHHHHHHH-HHHHHHHHH-HHHHHHhhhccCccccccc-----cccc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999875443 455556564 5766543221100000110 0112 34567789999999999999999999999
Q ss_pred HHHHHHHHH--HHHHhhhhhcc-ccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhh
Q psy15414 1010 LCEYLYDIS--TAFSEFYDNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQ 1086 (1458)
Q Consensus 1010 l~~yL~~LA--~~fN~fy~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~ 1086 (1458)
++..++++. ...|.|++.++ .+.++. ..+ ..++..+|..+|+.+.+ .|.|+||..
T Consensus 648 A~~~i~~f~~~~~~n~Yie~~k~~l~~~~--------~~~---~~~~~~~L~~~L~~l~~-----------LLaPfmP~~ 705 (1052)
T PRK14900 648 AANAVYAFVWHELCDWYIELAKEALASED--------PEA---RRSVQAVLVHCLQTSYR-----------LLHPFMPFI 705 (1052)
T ss_pred HHHHHHHHHHHhhhHHHHHhccHhhccCC--------HHH---HHHHHHHHHHHHHHHHH-----------HHHhHhHHH
Confidence 999999996 58899998875 343321 111 13456677777777766 788999999
Q ss_pred HHHhhhhcCC
Q psy15414 1087 TKGAAKKMNV 1096 (1458)
Q Consensus 1087 ~~~~l~~~g~ 1096 (1458)
.+.+...++.
T Consensus 706 aEeiw~~L~~ 715 (1052)
T PRK14900 706 TEELWHVLRA 715 (1052)
T ss_pred HHHHHHHhcc
Confidence 9998887764
No 49
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.77 E-value=6e-18 Score=200.69 Aligned_cols=258 Identities=18% Similarity=0.114 Sum_probs=163.2
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
+..|--.-|||+|++||||+|+.++.|+++|+++..||+|..+..++|+|..+...+.... +.. +.....++
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~l---g~~-----~~~~~~~~ 73 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKEL---GIS-----GKKDIEKM 73 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHh---CCC-----CCcchhhc
Confidence 3556667799999999999999999999999999999999999999999999875443211 100 00000000
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-----ccccccchhHHHHHH
Q psy15414 685 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQLVP 759 (1458)
Q Consensus 685 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-----~geS~~~~~v~~vi~ 759 (1458)
+-.+..+.++.+++.+.+.|.+.+++||+++++ ..++.|.+.+.+++.
T Consensus 74 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~ 126 (338)
T cd00818 74 ---------------------------GIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFK 126 (338)
T ss_pred ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHH
Confidence 000112335567888899999999999996542 224568889999999
Q ss_pred HHHHcCCeEeeCCcEEE----------Ec--C-----------CC-------------------C---------CCCcEE
Q psy15414 760 YLEKKGLLELDDGRKIM----------WG--E-----------DR-------------------G---------SIPMTI 788 (1458)
Q Consensus 760 ~L~~kG~~ye~dGa~~~----------~~--d-----------~~-------------------d---------~~~~vL 788 (1458)
+|.++|++|+.++.+++ |+ + +. | |.|..+
T Consensus 127 ~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~ 206 (338)
T cd00818 127 QLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPV 206 (338)
T ss_pred HHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceeeE
Confidence 99999999988775321 00 0 00 0 112111
Q ss_pred --EcCCC--------CccCCCcc--hHHHH---H-----HhhhcCCCeEEEEeeCCccc-cHHHHHHHHH-HcCCCCCCc
Q psy15414 789 --VKSDG--------GFTYDTSD--LAAIR---Q-----RIEEEKADWIVYVTDLGQGV-HFRLLEECAK-KAGILNPNK 846 (1458)
Q Consensus 789 --~ksDG--------t~tY~trD--iA~~~---~-----k~~~~~~d~iIyVvg~dq~~-hf~~l~~il~-alG~~~~~~ 846 (1458)
..++| ...|..=| +.+.. + .++.+ ...-+++.|.|+.. +|..+...+. ..|. .|..
T Consensus 207 ~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~-~p~d~~~~GkDii~~wf~~~~~~~~~~~~~-~p~~ 284 (338)
T cd00818 207 WYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEEL-FPADFILEGSDQTRGWFYSLLLLSTALFGK-APYK 284 (338)
T ss_pred EEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhcc-CCCeEEeecchHHhHHHHHHHHHHHHhcCC-Cccc
Confidence 12222 12232111 11211 1 11111 12236678998873 5555543222 3453 3332
Q ss_pred ceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-
Q psy15414 847 TRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR- 925 (1458)
Q Consensus 847 ~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~- 925 (1458)
. ...+|+++..+|+|||||+||+|+++|++++++ .+++||++++.++
T Consensus 285 -~--~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~-----------------------------~D~~R~~l~~~~~~ 332 (338)
T cd00818 285 -N--VIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYG-----------------------------ADALRLWVASSDVY 332 (338)
T ss_pred -e--EEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcC-----------------------------cHHHHHHHHhCCCc
Confidence 2 333455676789999999999999999999764 2468999998875
Q ss_pred CCcccc
Q psy15414 926 NLDYVF 931 (1458)
Q Consensus 926 ~~d~~F 931 (1458)
.+|..|
T Consensus 333 ~~d~~~ 338 (338)
T cd00818 333 AEDLRF 338 (338)
T ss_pred cCCCCC
Confidence 677655
No 50
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.76 E-value=1.9e-16 Score=208.99 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=129.9
Q ss_pred EEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecC-CCCCc
Q psy15414 850 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLD 928 (1458)
Q Consensus 850 ~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~-~~~~d 928 (1458)
.+..+|+|++.+|+|||||+||+|+|.|++++++ .+++||++++. .+++|
T Consensus 506 ~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yG-----------------------------aDalR~~ll~~~~~~~D 556 (874)
T PRK05729 506 DVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYG-----------------------------ADALRFTLAALASPGRD 556 (874)
T ss_pred heEEeeeEECCCCCCcccCCCCCCCHHHHHHHhC-----------------------------hHHHHHHHHhCCCCCCC
Confidence 4666688988899999999999999999999875 24699999987 45899
Q ss_pred cccchhhHHhhhcCcHHHHHHHHHHHHHHH-HHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy15414 929 YVFSFDKMLDDRGNTAVYLLYAYTRIASIA-RTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCL 1007 (1458)
Q Consensus 929 ~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIl-rK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p 1007 (1458)
++||++.+...+ +..+-+.+ .+|..++. .+.... .++. ...+ .+.++.++..+..+...+.++++++++
T Consensus 557 i~fs~~~l~~~~-~~~nkl~N-~~Rf~~~~~~~~~~~--~~~~-----~~~~-~~~D~wil~~l~~~~~~v~~~~e~y~f 626 (874)
T PRK05729 557 IRFDEERVEGYR-NFANKLWN-ASRFVLMNLEGADVG--ELPD-----PEEL-SLADRWILSRLNRTVAEVTEALDKYRF 626 (874)
T ss_pred ceeCHHHHHHHH-HHHHHHHH-HHHHHHHhcccCCcc--cccc-----cccC-CHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 999999986653 34455544 45766542 111110 1110 1122 356788999999999999999999999
Q ss_pred HHHHHHHHHHH--HHHHhhhhhcc-ccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchh
Q psy15414 1008 HHLCEYLYDIS--TAFSEFYDNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSIS 1084 (1458)
Q Consensus 1008 ~~l~~yL~~LA--~~fN~fy~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~ 1084 (1458)
+.++..+++++ ...|.|++..+ .+. + . . ..++..+|..+|+.+.. .|.|+||
T Consensus 627 ~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~--------~-~----~~~~~~~l~~~l~~~~~-----------lL~Pf~P 681 (874)
T PRK05729 627 DEAARALYEFIWNEFCDWYLELAKPVLQ-E--------A-A----KRATRATLAYVLEQILR-----------LLHPFMP 681 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--------h-H----HHHHHHHHHHHHHHHHH-----------HHcccch
Confidence 99999999998 45566666553 332 1 0 0 13455666666666555 7788999
Q ss_pred hhHHHhhhhcCC
Q psy15414 1085 SQTKGAAKKMNV 1096 (1458)
Q Consensus 1085 ~~~~~~l~~~g~ 1096 (1458)
...+.+...++-
T Consensus 682 fitEelw~~l~~ 693 (874)
T PRK05729 682 FITEELWQKLAP 693 (874)
T ss_pred hhHHHHHHhccc
Confidence 888888877763
No 51
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.74 E-value=4e-17 Score=192.01 Aligned_cols=261 Identities=16% Similarity=0.180 Sum_probs=161.5
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
.+++|+ |+..|+|++||||+|..+.+|+++|.++..|++|..++..+|+|. +-++ |.. +. +
T Consensus 19 ~~~~v~-tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~-lrKv--------p~~------l~---~ 79 (353)
T cd00674 19 EKYVVA-SGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR-LRKV--------PPN------VP---E 79 (353)
T ss_pred CeEEEe-cCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc-cccc--------ccc------hh---h
Confidence 456665 455699999999999999999999999999999999999999964 2111 110 00 0
Q ss_pred HHHH-hhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecc--cccccch-hHHHHHH
Q psy15414 684 FYKE-SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--GESFYQK-HMEQLVP 759 (1458)
Q Consensus 684 iy~~-~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~--geS~~~~-~v~~vi~ 759 (1458)
.+.+ .+..+..-|+ ..|-. ..+++.....|.+.+++|||+++.. .+..... ..+.+..
T Consensus 80 ~~~~~~G~pi~~ip~------------p~g~~------~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~ 141 (353)
T cd00674 80 SYEQYIGMPLSSVPD------------PFGCC------ESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILI 141 (353)
T ss_pred HHHHhcCccchhchh------------hcCCC------HHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHH
Confidence 0000 0000000000 01111 1356777888999999999977542 2223333 4455666
Q ss_pred HHHHcCCeEe---------eCCcEEE---EcCCCCCCCcEE--EcC-CCCccCCCc-------chH----HHHHHhh---
Q psy15414 760 YLEKKGLLEL---------DDGRKIM---WGEDRGSIPMTI--VKS-DGGFTYDTS-------DLA----AIRQRIE--- 810 (1458)
Q Consensus 760 ~L~~kG~~ye---------~dGa~~~---~~d~~d~~~~vL--~ks-DGt~tY~tr-------DiA----~~~~k~~--- 810 (1458)
.|.+.+.+.+ -...++= .++.+......+ +.. .|+.+|... |+- -.-||.+
T Consensus 142 ~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~ 221 (353)
T cd00674 142 ALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPM 221 (353)
T ss_pred HHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchh
Confidence 7777776631 1111111 122221000011 111 122334221 120 1112221
Q ss_pred hc-CCCeEEEEeeCCcccc---HHHHHHHHH-HcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHH
Q psy15414 811 EE-KADWIVYVTDLGQGVH---FRLLEECAK-KAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRR 885 (1458)
Q Consensus 811 ~~-~~d~iIyVvg~dq~~h---f~~l~~il~-alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~ 885 (1458)
+| -++-.+=++|.||..| |.++..+++ .+|+..| .|+.||+|+..+|+|||||+||+|+++|+|++++
T Consensus 222 rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P-----~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~-- 294 (353)
T cd00674 222 RWAILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPP-----VPVMYEFIGLKGGGKMSSSKGNVITPSDWLEVAP-- 294 (353)
T ss_pred hhhhcCCCEEeeCccccccccHHHHHHHHHHHHhCCCCC-----eEEEeeeEEeCCCCccCCCCCCcCCHHHHHHHhC--
Confidence 01 1334577899999999 999999999 9998543 4678888988777799999999999999999863
Q ss_pred HHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCC-CCCccccchhh
Q psy15414 886 SLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN-RNLDYVFSFDK 935 (1458)
Q Consensus 886 a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~-~~~d~~Fd~d~ 935 (1458)
-+++||++++.. +.++++||++.
T Consensus 295 ---------------------------~dalR~~~l~~~~~~~~i~Fd~~~ 318 (353)
T cd00674 295 ---------------------------PEVLRYLYARRKNPEKHIGFDLDI 318 (353)
T ss_pred ---------------------------hHHHHHHHHhCCCCCCCCCcChhH
Confidence 146899999987 78999999864
No 52
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=99.74 E-value=5.5e-18 Score=171.07 Aligned_cols=119 Identities=38% Similarity=0.573 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q psy15414 947 LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1026 (1458)
Q Consensus 947 lqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~ 1026 (1458)
|||+|+|++||++|++........ .....+.+++|++|+..+.+||+++.+++++++|+.+|+|+++||+.||+||+
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~---~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~ 77 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEY---DDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYD 77 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCH---CCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCcCCcccc---chhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999998643211100 00011467899999999999999999999999999999999999999999999
Q ss_pred hccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1027 NCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1027 ~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
+|+|+.++++ ....+||.|+.++++|+.+||+||||+||++|
T Consensus 78 ~~~I~~~~~~----~~~~~RL~Ll~~v~~vl~~~l~llgi~~~~~M 119 (119)
T PF05746_consen 78 NVRILDEDEE----IRKNNRLALLKAVRQVLKNGLDLLGIEPLEKM 119 (119)
T ss_dssp HS-STTSTTC----HH-HHHHHHHHHHHHHHHHHHHHTT----S--
T ss_pred hccccccchH----HHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 9999865432 11389999999999999999999999999987
No 53
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.74 E-value=2.5e-17 Score=198.42 Aligned_cols=262 Identities=19% Similarity=0.286 Sum_probs=162.6
Q ss_pred EEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHH
Q psy15414 607 LVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 686 (1458)
Q Consensus 607 ~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~ 686 (1458)
+|-..=|.|+|++||||+.+++.+|+++|.++..|++|..+...+++|+.|..-+...
T Consensus 2 ~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~---------------------- 59 (391)
T PF09334_consen 2 YITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ---------------------- 59 (391)
T ss_dssp EEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT----------------------
T ss_pred EEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc----------------------
Confidence 4555668999999999999999999999999999999999999999999775432211
Q ss_pred HhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHHHHHH
Q psy15414 687 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEK 763 (1458)
Q Consensus 687 ~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~~L~~ 763 (1458)
..+| +.+++.....|++.+++|||+++. ..+..|...+++++++|.+
T Consensus 60 ------------------------g~~p------~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~ 109 (391)
T PF09334_consen 60 ------------------------GIDP------EEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRLYD 109 (391)
T ss_dssp ------------------------TS-H------HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCH------HHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHHHh
Confidence 1112 235666788899999999997643 3345688899999999999
Q ss_pred cCCeEeeC--CcEEE----E---------cCC----------CC--CCCc----------------EEEc----------
Q psy15414 764 KGLLELDD--GRKIM----W---------GED----------RG--SIPM----------------TIVK---------- 790 (1458)
Q Consensus 764 kG~~ye~d--Ga~~~----~---------~d~----------~d--~~~~----------------vL~k---------- 790 (1458)
+|++|+.+ |.+|. | ++. ++ |.+. +.+|
T Consensus 110 ~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~ 189 (391)
T PF09334_consen 110 NGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFKLS 189 (391)
T ss_dssp TTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GG
T ss_pred cCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcccccccCCccccccccCccccceEEEEehH
Confidence 99999653 32221 0 000 00 0000 0000
Q ss_pred ---------------------------------------C-----------CCCccCCCcc--hHHHH------------
Q psy15414 791 ---------------------------------------S-----------DGGFTYDTSD--LAAIR------------ 806 (1458)
Q Consensus 791 ---------------------------------------s-----------DGt~tY~trD--iA~~~------------ 806 (1458)
+ +|...|..-| ++|..
T Consensus 190 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~ 269 (391)
T PF09334_consen 190 KFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDP 269 (391)
T ss_dssp GGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTS
T ss_pred HhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeeccCCceEEEcchHHHHHHHHhcccccccccc
Confidence 0 0111221111 01100
Q ss_pred ---HHh-hhcCCCeEEEEeeCCccccHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHH
Q psy15414 807 ---QRI-EEEKADWIVYVTDLGQGVHFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDE 881 (1458)
Q Consensus 807 ---~k~-~~~~~d~iIyVvg~dq~~hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde 881 (1458)
.++ ..-.-.++++++|.|..-++.-++ +++.++|+..| ..+.-++| ++. +|+|||||+||+|+++|++++
T Consensus 270 ~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP--~~i~~~~~--~~~-~g~K~SkS~gn~i~~~~~~~~ 344 (391)
T PF09334_consen 270 EEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLP--RRIVVHGF--LTL-DGEKMSKSRGNVIWPDDLLEE 344 (391)
T ss_dssp HHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB-----SEEEEE----EEE-TTCCEETTTTESSBHHHHHHH
T ss_pred chhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCC--CEEEeeee--EEE-CCeeccccCCcccCHHHHHHh
Confidence 000 000124678888888654444334 66777888544 34444555 444 789999999999999999998
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCccccchhhHHh-hhcCcHHHHHHHHHHH
Q psy15414 882 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLD-DRGNTAVYLLYAYTRI 954 (1458)
Q Consensus 882 ~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi 954 (1458)
++ .+++||++++..+ ..|.+|+|+.+.+ .|+++.+-+++...|+
T Consensus 345 ~~-----------------------------~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 345 YG-----------------------------ADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp H------------------------------HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CC-----------------------------hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 74 2469999999877 7999999999988 4666555555555676
No 54
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.73 E-value=6e-17 Score=195.23 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=97.6
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
+..|...-|+|+|++||||+|+.++.|+++|.++..|++|..+...+|+|..+...+......... .+. .
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~------~~~---~- 71 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGK------TRH---D- 71 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhccccc------chh---c-
Confidence 467888899999999999999999999999999999999999999999999886544322100000 000 0
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-----ccccccchhHHHHHH
Q psy15414 685 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQLVP 759 (1458)
Q Consensus 685 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-----~geS~~~~~v~~vi~ 759 (1458)
. ..++| ++..+.+++.+.+.|.+.+++||+++++ ..+..|...+++++.
T Consensus 72 -------~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 125 (382)
T cd00817 72 -------L-GREEF------------------LEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFV 125 (382)
T ss_pred -------C-CHHHH------------------HHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHH
Confidence 0 00111 2234456778889999999999998863 122346778999999
Q ss_pred HHHHcCCeEeeCC
Q psy15414 760 YLEKKGLLELDDG 772 (1458)
Q Consensus 760 ~L~~kG~~ye~dG 772 (1458)
+|.++|++|+...
T Consensus 126 ~L~~~G~iy~~~~ 138 (382)
T cd00817 126 RLYEKGLIYRDNR 138 (382)
T ss_pred HHHHCCCEEeeee
Confidence 9999999997543
No 55
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.71 E-value=1.5e-15 Score=201.00 Aligned_cols=218 Identities=11% Similarity=0.039 Sum_probs=142.4
Q ss_pred EEEeeCCccc-cHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCC
Q psy15414 818 VYVTDLGQGV-HFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNR 895 (1458)
Q Consensus 818 IyVvg~dq~~-hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~ 895 (1458)
+||.|.||.. +|..+. ..+...|. .|.. .++.+|+|+..+|+|||||+||+|+|.|++++++
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~-~P~k---~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yG------------ 630 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQ-APYK---NVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYG------------ 630 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCC-CChH---hhEecceEECCCCCCcCCCCCCCCCHHHHHHHcC------------
Confidence 5666666643 233322 12222353 2321 3555677887789999999999999999999874
Q ss_pred CCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHH--HHHHHhCCCcchhhhhcc
Q psy15414 896 HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIA--SIARTAGINSEDLRVAAQ 973 (1458)
Q Consensus 896 ~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~--SIlrK~~~~~~~i~~~~~ 973 (1458)
.+++||++++..+.+|++|+++.+...+++.++.+.++..++. +.+.++......++
T Consensus 631 -----------------aDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~---- 689 (861)
T TIGR00392 631 -----------------ADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVA---- 689 (861)
T ss_pred -----------------HHHHHHHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccc----
Confidence 2469999999977999999999987655545555555555554 44444321100000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHhhhhhcc-ccccccccccccchhHHHHHH
Q psy15414 974 STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTA--FSEFYDNCY-CIEKDAEGKIKTVHTGRLLLA 1050 (1458)
Q Consensus 974 ~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~--fN~fy~~~~-vL~k~~~~~~~~~~~aRL~L~ 1050 (1458)
...+ .+.++.|+..+..+.+.+.+++++++++.+++++++++.. .|.|++..+ .+-..... ...|
T Consensus 690 --~~~l-~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~-----~~~~---- 757 (861)
T TIGR00392 690 --VEKF-PEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKD-----NDKR---- 757 (861)
T ss_pred --cccC-CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCC-----HHHH----
Confidence 1122 3567889999999999999999999999999999999876 566666553 11111000 1122
Q ss_pred HHHHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcCC
Q psy15414 1051 EATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNV 1096 (1458)
Q Consensus 1051 ~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~ 1096 (1458)
++..+|..+|+.+.+ .|.|++|...+.+...++.
T Consensus 758 -~~~~~l~~~l~~l~~-----------lL~P~~P~~aeeiw~~L~~ 791 (861)
T TIGR00392 758 -AAQTTLYYALLTLVR-----------LLAPFLPHTAEEIYQNLPG 791 (861)
T ss_pred -HHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHhccc
Confidence 234455555555544 6788999888888887764
No 56
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.70 E-value=7.8e-17 Score=197.62 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=108.1
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
++||+||||+|||. +|++.+++. .+++++| +|.+|..+++++..++++||+. .+.+.|+++ + .+.+|+|
T Consensus 173 D~Vl~RsdG~ptY~---~A~~vdD~~-~~ithvI--rG~d~~~~t~~~~~l~~aLg~~---~p~~~H~p~-l-~~~~g~k 241 (470)
T TIGR00464 173 DFVILRSDGSPTYN---FAVVVDDYL-MKITHVI--RGEDHISNTPKQILIYQALGWK---IPVFAHLPM-I-LDEDGKK 241 (470)
T ss_pred CeEEEecCCCcccc---cHHHHHHHh-CCCCEEE--ECchhhcCHHHHHHHHHHcCCC---CCeEEEEee-e-ecCCCcc
Confidence 57899999999999 899999985 6999999 9999999999999999999974 357899999 4 4568899
Q ss_pred cccccCCccchHHHHHHH-HHHH-HHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhc
Q psy15414 865 FKTRSGDTVKLSELLDEG-LRRS-LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 865 MSKR~GnvI~l~DLLde~-~~~a-~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~ 941 (1458)
||||+| .+++++|++++ ...| .+.+...|-...-. .+..... ++++||+++..+.+++.|||+++..+|+
T Consensus 242 LSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~-~e~~~~~-----~~i~~f~l~~~~~~~~~fd~~kL~~~N~ 313 (470)
T TIGR00464 242 LSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPDD-QEFFSLE-----ELIEIFSLNRVSKSPAKFDWKKLQWLNA 313 (470)
T ss_pred ccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCCc-cccCCHH-----HHHHhcCcccCCCCCCeecHHHHHHHHH
Confidence 999999 88999999985 3333 44444433211100 1111111 4689999999999999999999666764
No 57
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.66 E-value=1.2e-15 Score=187.30 Aligned_cols=137 Identities=19% Similarity=0.167 Sum_probs=106.7
Q ss_pred CcEEEcCCCCccCCCcch-HHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCc
Q psy15414 785 PMTIVKSDGGFTYDTSDL-AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 863 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDi-A~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~ 863 (1458)
++||+||||+|||.++|+ ++|.++ ++++| +|++|..+++++..+++++|+. .+.+.|+++ +.+.+|+
T Consensus 183 D~Vl~RsDG~ptY~~a~vVdD~~~~-----ithvI--rG~d~~~~t~~q~~l~~alG~~---~p~~~H~pl--i~~~~g~ 250 (476)
T PRK01406 183 DFVILRSDGTPTYNFAVVVDDHLMG-----ITHVI--RGEDHLSNTPKQILLYEALGWE---VPVFAHLPL--ILGPDGK 250 (476)
T ss_pred CcEEEecCCCccccchHHHHHHHcC-----CCEEE--ECchhhcCHHHHHHHHHHhCCC---CCeEEEeee--eeCCCCC
Confidence 589999999999999998 777665 48888 9999999999999999999984 357899999 4557899
Q ss_pred ccccccCCccchHHHHHHH-HHH-HHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhc
Q psy15414 864 KFKTRSGDTVKLSELLDEG-LRR-SLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 864 KMSKR~GnvI~l~DLLde~-~~~-a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~ 941 (1458)
|||||.| .++++++++++ ... ..+.+...|.... .++..... +++++|+++..+.+++.|||+++..+|+
T Consensus 251 klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG~s~~--~~e~~~~~-----~~i~~f~l~~~~~s~~~fd~~kL~~~N~ 322 (476)
T PRK01406 251 KLSKRHG-ATSVEQYRDMGYLPEALLNYLALLGWSHG--DQEIFSLE-----ELIELFDLERVSKSPARFDIKKLDWLNG 322 (476)
T ss_pred cccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhCCCCC--ccccCCHH-----HHHHhcChhhCCCCCccccHHHHHHHHH
Confidence 9999999 88999999985 333 3444444332211 11111111 4589999999999999999999988864
No 58
>PLN02943 aminoacyl-tRNA ligase
Probab=99.66 E-value=2e-14 Score=190.40 Aligned_cols=190 Identities=10% Similarity=0.083 Sum_probs=123.9
Q ss_pred EEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccc
Q psy15414 851 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYV 930 (1458)
Q Consensus 851 H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~ 930 (1458)
...+|+|++.+|+|||||+||+|++.|++++++ .+++||++++.++++|++
T Consensus 570 v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg-----------------------------aDalR~~l~~~~~~~d~~ 620 (958)
T PLN02943 570 VYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFG-----------------------------TDALRFTLALGTAGQDLN 620 (958)
T ss_pred EEEeccEECCCCCcccCcCCCCCCHHHHHHhcC-----------------------------ChHHHHHHHhCCCCCCcc
Confidence 334466777899999999999999999999874 246999999988899999
Q ss_pred cchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCC-cc----hh--hhhc-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15414 931 FSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN-SE----DL--RVAA-QSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1002 (1458)
Q Consensus 931 Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~-~~----~i--~~~~-~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~ 1002 (1458)
|+++.+.. +.+..+-+.+++ |.. +...... .. .+ .... ......+ ...++-++..+....+.+.+++
T Consensus 621 fs~~~l~~-~~~~~~kl~N~~-rf~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~D~wilskl~~~i~~v~~~~ 695 (958)
T PLN02943 621 LSTERLTS-NKAFTNKLWNAG-KFV--LQNLPSQSDTSAWEHILACKFDKEESLLSL-PLPECWVVSKLHELIDSVTTSY 695 (958)
T ss_pred ccHHHHHH-HHHHHHHHHHHH-HHH--HhccccccccccccccccccCCcccccccc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99998765 233334444432 221 1111000 00 00 0000 0000112 3456778899999999999999
Q ss_pred HhhhHHHHHHHHHHH--HHHHHhhhhhcc-ccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccC
Q psy15414 1003 RDLCLHHLCEYLYDI--STAFSEFYDNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGI 1079 (1458)
Q Consensus 1003 ~~~~p~~l~~yL~~L--A~~fN~fy~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l 1079 (1458)
++++++.+++.++++ ....|.|++.++ .+.++++ ...+ .++..+|..+|+.+.+ .|
T Consensus 696 e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~------~~~~----~~a~~vL~~vl~~ll~-----------LL 754 (958)
T PLN02943 696 DKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGD------NSAL----SRAQAVLLYVFENILK-----------LL 754 (958)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCc------hHHH----HHHHHHHHHHHHHHHH-----------HH
Confidence 999999999999999 478888888774 3432211 1111 3345555555555543 66
Q ss_pred CcchhhhHHHhhhhcC
Q psy15414 1080 SSSISSQTKGAAKKMN 1095 (1458)
Q Consensus 1080 ~~~~~~~~~~~l~~~g 1095 (1458)
.|+||...+.+...++
T Consensus 755 ~PfmPfitEELwq~L~ 770 (958)
T PLN02943 755 HPFMPFVTEELWQALP 770 (958)
T ss_pred hCcchhHHHHHHHHcC
Confidence 7888888888777665
No 59
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.66 E-value=8.4e-14 Score=185.44 Aligned_cols=183 Identities=18% Similarity=0.146 Sum_probs=117.8
Q ss_pred EEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCc
Q psy15414 850 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLD 928 (1458)
Q Consensus 850 ~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d 928 (1458)
.++.+|+|+..+|+|||||+||+|+|.|++++++ .+++||++++..+ .+|
T Consensus 578 ~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yG-----------------------------aDalR~~lls~~~~~~D 628 (975)
T PRK06039 578 NVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYG-----------------------------ADALRWYLLSSSAPWED 628 (975)
T ss_pred EEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhC-----------------------------hHHHHHHHHhCCCCCCC
Confidence 3556677888899999999999999999999875 2469999999886 899
Q ss_pred cccchhhHHhh-hcCcHHHHHHHHHHHHHHHHHhCC-CcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15414 929 YVFSFDKMLDD-RGNTAVYLLYAYTRIASIARTAGI-NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1006 (1458)
Q Consensus 929 ~~Fd~d~~l~~-n~n~g~ylqYa~aRi~SIlrK~~~-~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~ 1006 (1458)
++||++.+++. ++.. +-+.+++.++.... +... ...... .....+ .+.++.++..+..+...+.+++++++
T Consensus 629 ~~fs~~~~~~~~~~~l-~kl~N~~~f~~~y~-~~~~~~~~~~~----~~~~~~-~~~D~wils~l~~li~~v~~a~e~y~ 701 (975)
T PRK06039 629 LRFSEDGVREVVRKFL-LTLWNVYSFFVLYA-NLDGFDYPPAE----DEVDSL-NELDRWILSRLNSLVKEVTEALDNYD 701 (975)
T ss_pred ceechhHHHHHHHHHH-HHHHHHHHHHHHHh-hhccCCccccc----cccccC-CHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999996653 3332 33444443332111 1111 000000 001122 46688899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhcc-ccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHH
Q psy15414 1007 LHHLCEYLYDISTAFSEFY-DNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEE 1074 (1458)
Q Consensus 1007 p~~l~~yL~~LA~~fN~fy-~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~ 1074 (1458)
++.++..|++++..++.+| +..+ -+-.... ...|.....++..+|...+.+|..-+|-..++
T Consensus 702 ~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~------~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEe 765 (975)
T PRK06039 702 ITKAARAIRDFVDDLSNWYIRRSRRRFWKEED------DPDKLAAYATLYTVLETLSRLAAPFTPFIAEE 765 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC------cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999887766 4432 1111110 12233333444455555555555544444444
No 60
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=99.65 E-value=4.6e-16 Score=157.87 Aligned_cols=122 Identities=31% Similarity=0.483 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q psy15414 947 LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1026 (1458)
Q Consensus 947 lqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~ 1026 (1458)
+||+|+|++||++|++.....++.....+...+.++.|++|+..+..||+++..++.+.+|+.+|.|+++|+..||+||+
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~ 80 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYN 80 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHc
Confidence 58999999999999853110122111112233557899999999999999999999999999999999999999999999
Q ss_pred hccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1027 NCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1027 ~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
+++|+.+++ ++++..||.|+.++++++.+++++|||+||++|
T Consensus 81 ~v~V~~~~~----~~~~~~RL~Ll~~~~~~l~~~~~llgi~~~~~m 122 (122)
T smart00836 81 KCRVLGEEN----PELRAARLALLKAVRQVLANGLRLLGISAPERM 122 (122)
T ss_pred cCcccCCCC----HHHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 999986541 246889999999999999999999999999987
No 61
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.63 E-value=3.5e-16 Score=148.63 Aligned_cols=84 Identities=40% Similarity=0.629 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhccccCCCCCceeeccCCCCCCCchhhhcHHHHhchhccccCCCCChHHHHHHHHHhhhhccccCCcc
Q psy15414 1107 YLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 1186 (1458)
Q Consensus 1107 ~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~gd~a~n~a~~lak~~~~~~~~~~pr~ia~~~~~~~~~~~~~~~~~ 1186 (1458)
+|.+.|++|+..+.. .+.....+.|++ |++..||||+||+||.+||.+ |++|++||+.|++. |..++
T Consensus 2 ~l~~~i~~~l~~~~~-~~~~~~~~~i~~-~~~~~~GD~~~n~a~~lak~~-----k~~P~~iA~~i~~~----l~~~~-- 68 (85)
T PF03485_consen 2 QLKKAISEALKKAFG-IDLEEIEIQIEK-PPNPKFGDYQTNIAFRLAKKL-----KKNPREIAEEIAEK----LEKSP-- 68 (85)
T ss_dssp HHHHHHHHHHHHCHS-TTCCCHGGGEEE--SSGGG-SEEEEHHHHHHHHT-----TS-HHHHHHHHHHC----HCTTT--
T ss_pred hHHHHHHHHHHHHhc-ccccccceEEEc-CCCCCceeeeccchHHHHHHc-----CCCHHHHHHHHHHh----cCCCC--
Confidence 567788888888631 111224667777 889999999999999999999 79999999999999 44444
Q ss_pred ccCeeEEEEecCCeeEEEe
Q psy15414 1187 AKVIDKIEVAKPGFVNVFL 1205 (1458)
Q Consensus 1187 ~~~~~~~eiagpGfin~~l 1205 (1458)
.|++|||+|||||||+|
T Consensus 69 --~i~~vev~gpGFiN~~L 85 (85)
T PF03485_consen 69 --IIEKVEVAGPGFINFFL 85 (85)
T ss_dssp --TEEEEEEETTTEEEEEE
T ss_pred --CEEEEEEcCCcEEEEeC
Confidence 39999999999999997
No 62
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.63 E-value=2e-13 Score=182.53 Aligned_cols=215 Identities=10% Similarity=0.061 Sum_probs=131.4
Q ss_pred EeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHH-----------HHHhhhhhheeeeee
Q psy15414 853 GFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSE-----------AQQAVAYGCIKYADL 921 (1458)
Q Consensus 853 ~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~-----------~ad~v~~~alRy~lL 921 (1458)
.+|+|++.+|+|||||+||+|+|.++++.+.- +.+..+.....+++.|+.. .....|.+++||+++
T Consensus 574 ~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~---~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~ 650 (995)
T PTZ00419 574 LHAMVRDSQGEKMSKSKGNVIDPLEVIEGISL---QDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLL 650 (995)
T ss_pred ccceEECCCCCCcccCCCCcCChHHHhcccch---hhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHH
Confidence 34678888999999999999999999984321 1111100011111211111 112568889999999
Q ss_pred cCCC-CCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcch-hhhhccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15414 922 SHNR-NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED-LRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 999 (1458)
Q Consensus 922 s~~~-~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~-i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~ 999 (1458)
+... ..|++||.+.+... .+..+-+-+++.++.+.+.+....... .+. ......+ ...++-++..+..+...+.
T Consensus 651 ~~~~~~~Di~~~~~~v~~~-~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~D~wIls~L~~~i~~v~ 726 (995)
T PTZ00419 651 AYTQQGRNINLDINRVVGY-RHFCNKLWNAVKFALMKLLKDFNLPNSTLFK--PNNVESL-PWEDKWILHRLNVAIKEVT 726 (995)
T ss_pred hcCCCCCCccccHHHHHHH-HHHHHHHHHHHHHHHhccccccccccccccc--ccccccC-CHHHHHHHHHHHHHHHHHH
Confidence 8655 78999999887643 234455556655554433322110000 000 0000112 2457789999999999999
Q ss_pred HHHHhhhHHHHHHHHHH--HHHHHHhhhhhcc-ccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhh
Q psy15414 1000 LVTRDLCLHHLCEYLYD--ISTAFSEFYDNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKK 1076 (1458)
Q Consensus 1000 ~a~~~~~p~~l~~yL~~--LA~~fN~fy~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~ 1076 (1458)
+++++++++.+++.+++ +....|.|++..+ .+.+..+ ..+ ..++..+|..+|+.+.+
T Consensus 727 ~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~-------~~~---~~~~~~~L~~vL~~~l~---------- 786 (995)
T PTZ00419 727 EGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSD-------GER---KQHAQDVLHTVLDIGLR---------- 786 (995)
T ss_pred HHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCC-------cHH---HHHHHHHHHHHHHHHHH----------
Confidence 99999999999999999 5677888888775 3411111 111 13455555555555444
Q ss_pred ccCCcchhhhHHHhhhhcC
Q psy15414 1077 QGISSSISSQTKGAAKKMN 1095 (1458)
Q Consensus 1077 l~l~~~~~~~~~~~l~~~g 1095 (1458)
.|+|++|...+.+...++
T Consensus 787 -LL~PfmPfitEElw~~L~ 804 (995)
T PTZ00419 787 -LLHPMMPFITEELYQRLP 804 (995)
T ss_pred -HHhhhhhhhHHHHHHhhh
Confidence 677788888877777664
No 63
>PLN02882 aminoacyl-tRNA ligase
Probab=99.62 E-value=3.7e-13 Score=180.29 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=93.2
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
.++..+.-.-||++|++|+||+++.++-|+++|+.+..||+|.+....+.+|..+...+.... +-. . ...+.
T Consensus 37 ~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~l---gi~-~-~~~i~--- 108 (1159)
T PLN02882 37 LPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKL---GIK-R-RDDVL--- 108 (1159)
T ss_pred CCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHc---CCC-C-ccchh---
Confidence 345888889999999999999999999999999999999999999999999999876542211 100 0 00111
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc-----ccccchhHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 757 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g-----eS~~~~~v~~v 757 (1458)
++ .-+.|.+.++ .++..+...+.+.+.+||+++++.. +..|...+..+
T Consensus 109 ~~---------g~~~f~~~c~------------------~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~ 161 (1159)
T PLN02882 109 KM---------GIDKYNEECR------------------SIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWV 161 (1159)
T ss_pred hc---------CHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHH
Confidence 11 0122333333 3455567778888889998775421 22356678888
Q ss_pred HHHHHHcCCeE
Q psy15414 758 VPYLEKKGLLE 768 (1458)
Q Consensus 758 i~~L~~kG~~y 768 (1458)
+.+|.++|++|
T Consensus 162 f~~l~~kGliy 172 (1159)
T PLN02882 162 FKQLFEKGLVY 172 (1159)
T ss_pred HHHHHHCCCEE
Confidence 89999999887
No 64
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=7.5e-13 Score=167.52 Aligned_cols=175 Identities=15% Similarity=0.158 Sum_probs=119.8
Q ss_pred EEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecC-CCCCccc
Q psy15414 852 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLDYV 930 (1458)
Q Consensus 852 ~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~-~~~~d~~ 930 (1458)
.-+|+|.+.+|+|||||+||+|+|.|+++++| .+|+||++.+. +++.|+.
T Consensus 513 ~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yG-----------------------------aDAlRf~la~~~~~G~Di~ 563 (877)
T COG0525 513 YIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYG-----------------------------ADALRFTLASLASPGRDIN 563 (877)
T ss_pred EEeeeEEcCCCCCCcccCCCcCCHHHHHHHhC-----------------------------hHHHHHHHHhccCCCcccC
Confidence 34478999999999999999999999999986 24689998887 6699999
Q ss_pred cchhhHHhhhcCcHHHHHHHHHHHHHHHH-HhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy15414 931 FSFDKMLDDRGNTAVYLLYAYTRIASIAR-TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH 1009 (1458)
Q Consensus 931 Fd~d~~l~~n~n~g~ylqYa~aRi~SIlr-K~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~ 1009 (1458)
||++++... -|.++-+=++ +|...+.. +.+... . ..... ++.++=++..+.+....+.+++++|++..
T Consensus 564 ~~~~~~~~~-rnF~nKlWNa-~Rfv~~~~~~~~~~~--~------~~~~~-~~~drWIls~l~~~v~~v~~~ld~y~f~~ 632 (877)
T COG0525 564 FDEKRVEGY-RNFLNKLWNA-TRFVLMNLDDLGPDD--L------DLLAL-SLADRWILSRLNETVKEVTEALDNYRFDE 632 (877)
T ss_pred cCHHHHHHH-HHHHHHHHhH-HHHHHhcccccCccc--c------ccccc-chHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999998753 1334444333 56554422 211110 0 00111 46678889999999999999999999999
Q ss_pred HHHHHHHHH-HHHHhhh-hhcc-ccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHH
Q psy15414 1010 LCEYLYDIS-TAFSEFY-DNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEE 1074 (1458)
Q Consensus 1010 l~~yL~~LA-~~fN~fy-~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~ 1074 (1458)
+++.|++.. ..|-.+| +-.+ .+..+ ..++.....+...||.+.|+||-.-+|-..++
T Consensus 633 a~~~ly~F~W~~fcD~YlEl~K~~l~~~--------~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEe 692 (877)
T COG0525 633 AARALYEFIWNDFCDWYLELAKPRLYGG--------EEEKRAARATLYYVLDTLLRLLHPFMPFITEE 692 (877)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhcCc--------HHHHHHHHHHHHHHHHHHHHHhCCCCccchHH
Confidence 999999876 3443333 2222 23211 12333555677788888888888766655554
No 65
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=1.5e-13 Score=181.81 Aligned_cols=171 Identities=11% Similarity=0.095 Sum_probs=111.0
Q ss_pred EEEeeCCccc-cHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCC
Q psy15414 818 VYVTDLGQGV-HFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNR 895 (1458)
Q Consensus 818 IyVvg~dq~~-hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~ 895 (1458)
+|+.|.||.. +|..+. ..+-..|. .|. ..+ +.+|+|+..+|+|||||+||+|+|.+++++++
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~~g~-~P~-k~v--l~HG~vld~~G~KMSKSlGNvIdP~~ii~~yG------------ 611 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVATRGK-APY-KQV--LTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYG------------ 611 (912)
T ss_pred EEEecccccchHHHHHHHHHHHhcCC-Ccc-cee--EEeeeEECCCCCCCCCCCCCcCCHHHHHHhcC------------
Confidence 6788888763 455543 22223564 333 233 34456887799999999999999999999875
Q ss_pred CCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCC
Q psy15414 896 HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQST 975 (1458)
Q Consensus 896 ~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~ 975 (1458)
.+++||++++..+.+|++||.+.+... .+....+.+++ | ++-.+..... +.....+
T Consensus 612 -----------------aDalR~~ll~~~~~~D~~~s~~~l~~~-~~~~~kl~N~~-r---f~~~nl~~~~--~~~~~~~ 667 (912)
T PRK05743 612 -----------------ADILRLWVASTDYSGDVRISDEILKQV-AEAYRRIRNTL-R---FLLGNLNDFD--PAKDAVP 667 (912)
T ss_pred -----------------hHHHHHHHHhcCCCCCeeecHHHHHHH-HHHHHHHHHHH-H---HHHhCccCCC--cccccCC
Confidence 246899999988899999998886642 12222333322 1 2111100000 0000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HH-Hhhhhhcc
Q psy15414 976 PVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST-AF-SEFYDNCY 1029 (1458)
Q Consensus 976 ~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~-~f-N~fy~~~~ 1029 (1458)
...+ .+.++.++..+..+.+.+.+++++++++.+++.+++++. .+ |.|++..+
T Consensus 668 ~~~l-~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K 722 (912)
T PRK05743 668 YEEL-LELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIK 722 (912)
T ss_pred chhC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheecc
Confidence 1112 356788999999999999999999999999999999993 44 66666553
No 66
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.59 E-value=1.1e-14 Score=177.30 Aligned_cols=134 Identities=17% Similarity=0.189 Sum_probs=103.8
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
++||+||||+|||..+ ++.+++. .+++++| +|.+|..+++++..+++++|+. .+.+.|+++ |++.+|+|
T Consensus 172 D~Vi~RsDG~ptY~~a---~vVDD~~-m~ithVI--RG~d~~~~t~~q~~l~~aLG~~---~p~~~H~pl--v~~~~g~K 240 (513)
T PRK14895 172 DMVLLRADGTATYMLA---VVVDDHD-MGITHII--RGDDHLTNAARQLAIYQAFGYA---VPSMTHIPL--IHGADGAK 240 (513)
T ss_pred CcEEEEeCCCcchhhH---HHHHHHh-cCCCEEE--ECchHhhhHHHHHHHHHHcCCC---CCeEEEEEe--EEcCCCCc
Confidence 5799999999999964 7788874 6999999 9999999999999999999974 357899999 77789999
Q ss_pred cccccCCccchHHHHHHHH--HHHHHHHhhcCCC----CCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHh
Q psy15414 865 FKTRSGDTVKLSELLDEGL--RRSLDKLKDKNRH----TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 938 (1458)
Q Consensus 865 MSKR~GnvI~l~DLLde~~--~~a~~~~~~~~~~----~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~ 938 (1458)
||||.|. ..+.++.+.+. +...+.+...|.. +.++.+| . +..|.+..-..++..||++++..
T Consensus 241 LSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~e------l-----~~~F~~~~v~~s~~~FD~~KL~w 308 (513)
T PRK14895 241 LSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQ------A-----IDWFNLDSLGKSPSKLDFAKMNS 308 (513)
T ss_pred cccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHH------H-----HhhCCHHhCcCCcCcCCHHHHHH
Confidence 9999996 46777777532 3345566544432 1223322 2 45677777777899999999988
Q ss_pred hhc
Q psy15414 939 DRG 941 (1458)
Q Consensus 939 ~n~ 941 (1458)
+|+
T Consensus 309 lN~ 311 (513)
T PRK14895 309 LNA 311 (513)
T ss_pred HHH
Confidence 875
No 67
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.57 E-value=2.3e-12 Score=171.03 Aligned_cols=138 Identities=21% Similarity=0.287 Sum_probs=97.4
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
.++..|-..=|||+|+|||||+|+.++.|+++|+.+..||+|.......-.|+.+...+..+...... .+
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~------~~---- 93 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL------TI---- 93 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh------cc----
Confidence 45789999999999999999999999999999999999999999999999999987655444211000 00
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecccc-----cccchhHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE-----SFYQKHMEQL 757 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~ge-----S~~~~~v~~v 757 (1458)
+.|.... .. ..++|.+++ || ..+++.+...+.+.+++||++++++.+ -.|...+...
T Consensus 94 ~~~~~~~-~i-~~~~i~~~~----------~~------~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~ 155 (938)
T TIGR00395 94 KNYTEVH-AI-PREELLKFT----------DP------EYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQ 155 (938)
T ss_pred ccchhhc-cC-CHHHHHhhc----------CH------HHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHH
Confidence 0000000 00 111222211 11 234556677888999999999987421 2456788999
Q ss_pred HHHHHHcCCeE
Q psy15414 758 VPYLEKKGLLE 768 (1458)
Q Consensus 758 i~~L~~kG~~y 768 (1458)
+.+|.++|++|
T Consensus 156 f~~L~e~G~iy 166 (938)
T TIGR00395 156 MNKLKELGLIV 166 (938)
T ss_pred HHHHHHCCCEe
Confidence 99999999998
No 68
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.55 E-value=1.6e-13 Score=170.40 Aligned_cols=259 Identities=15% Similarity=0.178 Sum_probs=151.0
Q ss_pred EEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHH
Q psy15414 606 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 685 (1458)
Q Consensus 606 V~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy 685 (1458)
++|+ |+..|+|++||||+|..+.+|+++|.|+..|++|..++..+|+|. +- +.|+. -|.. +.+
T Consensus 25 ~~~~-~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~-lR--------kvp~~----~p~~---~~~ 87 (510)
T PRK00750 25 VVVE-TGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG-LR--------KVPDN----VPNQ---EML 87 (510)
T ss_pred EEEE-eCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc-cc--------ccCCC----CCch---HHH
Confidence 5555 555799999999999999999999999999999999999999984 10 11110 0100 000
Q ss_pred HH-hhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccccc--ccchhH-HHHHHHH
Q psy15414 686 KE-SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES--FYQKHM-EQLVPYL 761 (1458)
Q Consensus 686 ~~-~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~geS--~~~~~v-~~vi~~L 761 (1458)
.+ .+..+..-|+ ..|. -+.+++.....|.+.+++|||.++..+.+ ...+.. +.+...|
T Consensus 88 ~~~~G~pl~~~p~------------p~G~------~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l 149 (510)
T PRK00750 88 EEYLGKPLTEIPD------------PFGC------HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTAL 149 (510)
T ss_pred HHhcCcccccCCC------------CCCC------chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHH
Confidence 00 0000000000 0111 12356677788999999999976532222 223332 2333344
Q ss_pred HHcCCeEe---------eCCcEEE---EcCCCCCCCcE-EEc--C-CCCccCCCc-------chH----HHHHHhh---h
Q psy15414 762 EKKGLLEL---------DDGRKIM---WGEDRGSIPMT-IVK--S-DGGFTYDTS-------DLA----AIRQRIE---E 811 (1458)
Q Consensus 762 ~~kG~~ye---------~dGa~~~---~~d~~d~~~~v-L~k--s-DGt~tY~tr-------DiA----~~~~k~~---~ 811 (1458)
.+.+.+.+ ....++= .++.+.....+ +.. . .|+.+|... |+- -.-||++ +
T Consensus 150 ~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~~r 229 (510)
T PRK00750 150 ENRDEIMEILLPYLGEERQATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWPMR 229 (510)
T ss_pred HhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcHHH
Confidence 44444321 1111221 12222200000 101 1 122334211 111 0112221 0
Q ss_pred c-CCCeEEEEeeCCccc-cHHHHHHHHH-HcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHH
Q psy15414 812 E-KADWIVYVTDLGQGV-HFRLLEECAK-KAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLD 888 (1458)
Q Consensus 812 ~-~~d~iIyVvg~dq~~-hf~~l~~il~-alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~ 888 (1458)
| -++-.+-+.|.||.. ++.....+++ .+|+..| .|+.||+|+..+|+|||||+||+|++.|+++.+.
T Consensus 230 W~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P-----~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~----- 299 (510)
T PRK00750 230 WAALGVDFEPFGKDHASASYDTSKKIAREILGGEPP-----EPFVYELFLDKKGEKISKSKGNVITIEDWLEYAP----- 299 (510)
T ss_pred HHHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCC-----eeeeeeeEEeCCCCcccccCCCccCHHHHHHHCC-----
Confidence 1 134557889999999 9999999999 9998544 2455677887678999999999999999998753
Q ss_pred HHhhcCCCCCCChhhhHHHHHhhhhhheeeeee-cCCCCCccccch
Q psy15414 889 KLKDKNRHTELTPTELSEAQQAVAYGCIKYADL-SHNRNLDYVFSF 933 (1458)
Q Consensus 889 ~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lL-s~~~~~d~~Fd~ 933 (1458)
-+++|||++ +.++.++++|++
T Consensus 300 ------------------------pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 300 ------------------------PESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred ------------------------HHHHHHHHHhCCCCCCCCcccH
Confidence 135896666 667789999998
No 69
>PLN02381 valyl-tRNA synthetase
Probab=99.51 E-value=3.4e-11 Score=160.80 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=94.5
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
+++..|...-||++|+|||||+++.++.|+++|+.+..||+|......+.+|..+...+..-. ....+. ...++
T Consensus 127 ~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l---~~~~~~--~~~~~- 200 (1066)
T PLN02381 127 KPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKL---MRERHL--TRHDI- 200 (1066)
T ss_pred CCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHh---HhhcCC--ChhhC-
Confidence 456889999999999999999999999999999999999999999999999987754332110 000000 00000
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecccc-----cccchhHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE-----SFYQKHMEQL 757 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~ge-----S~~~~~v~~v 757 (1458)
..++|.+.++ .+++.+...+...+++||+++++..+ ..|...+..+
T Consensus 201 -----------~re~f~~~~~------------------~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 251 (1066)
T PLN02381 201 -----------GREEFVSEVW------------------KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEA 251 (1066)
T ss_pred -----------CHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHH
Confidence 1122333332 23566677888899999998876322 2356788999
Q ss_pred HHHHHHcCCeEe
Q psy15414 758 VPYLEKKGLLEL 769 (1458)
Q Consensus 758 i~~L~~kG~~ye 769 (1458)
+.+|.++|++|.
T Consensus 252 F~~L~~~GlIyr 263 (1066)
T PLN02381 252 FVRLYKEGLIYR 263 (1066)
T ss_pred HHHHHHCCCEEe
Confidence 999999999984
No 70
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.51 E-value=8e-14 Score=145.63 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=52.5
Q ss_pred EEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHH
Q psy15414 218 VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 272 (1458)
Q Consensus 218 VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~ 272 (1458)
|++++|||+|++||||+|+++++|.++|.|+..||+|...++++|||+|++..+.
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~ 55 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPAN 55 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999988664
No 71
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.49 E-value=8.1e-13 Score=162.96 Aligned_cols=260 Identities=13% Similarity=0.144 Sum_probs=142.1
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
+++|+-.= .|+|++||||+|..+.+|+++|.|+..|++|..++..+|+-. +- +-|+. -| +.
T Consensus 19 ~~~~~tg~-~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~-lR--------Kvp~~----~p-----~~ 79 (515)
T TIGR00467 19 LYTVASGI-TPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDP-LR--------KVYPF----LP-----EE 79 (515)
T ss_pred eEEEecCC-CCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcc-cc--------ccccc----cc-----HH
Confidence 57777554 499999999999999999999999999999999999999831 11 11110 00 00
Q ss_pred HHHhhh-ccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccccc-cc-----chhHHHH
Q psy15414 685 YKESKK-RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES-FY-----QKHMEQL 757 (1458)
Q Consensus 685 y~~~~~-~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~geS-~~-----~~~v~~v 757 (1458)
|.+.-. -+..- -||.-. -+.+.+.....|...++.|||.+.....| .| .+.+..+
T Consensus 80 ~~~ylG~Pl~~v----------------pdp~g~--~~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~ 141 (515)
T TIGR00467 80 LETYLGMPLTRI----------------PDPEGC--KTSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIA 141 (515)
T ss_pred HHHhCCCcceec----------------CCCCCC--cHHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHH
Confidence 111000 00000 001000 02245556677888888999865322122 12 2222222
Q ss_pred HHH-------HHH-cCCeEeeCCcEEE--EcCCCCC--CCcEEEcCCCCccCCC-------cch----HHHHHHhh---h
Q psy15414 758 VPY-------LEK-KGLLELDDGRKIM--WGEDRGS--IPMTIVKSDGGFTYDT-------SDL----AAIRQRIE---E 811 (1458)
Q Consensus 758 i~~-------L~~-kG~~ye~dGa~~~--~~d~~d~--~~~vL~ksDGt~tY~t-------rDi----A~~~~k~~---~ 811 (1458)
++. |.+ .|- ...++..-+ .++.+.. .+.+=+..+.+-+|.. .|+ +-.-||.+ +
T Consensus 142 L~~~~~I~~il~~~~~~-~~~~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~R 220 (515)
T TIGR00467 142 LDHRKEISEILNEYRTS-KLEENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPAR 220 (515)
T ss_pred HHhHHHHHHHHHHhcCC-ccCCCceeeeeecCCcCccCceEEEecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHhh
Confidence 211 111 010 011111101 1222210 0111011111222321 111 00112211 0
Q ss_pred c-CCCeEEEEeeCCccc----cHHHHHHHHHHcCCCCCCcceEEEEEeEEE-ecCCCcccccccCCccchHHHHHHHHHH
Q psy15414 812 E-KADWIVYVTDLGQGV----HFRLLEECAKKAGILNPNKTRMDFVGFGVV-LGEDRKKFKTRSGDTVKLSELLDEGLRR 885 (1458)
Q Consensus 812 ~-~~d~iIyVvg~dq~~----hf~~l~~il~alG~~~~~~~~~~H~~fg~V-~~~~G~KMSKR~GnvI~l~DLLde~~~~ 885 (1458)
| -++-.+=-+|.||+. |-.+...+.+++|..+|. ++.|+++ +..+|+|||||+||+|+++|+++.+.
T Consensus 221 W~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~-----~~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~-- 293 (515)
T TIGR00467 221 WKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPV-----TVQYEWISLKGKGGKMSSSKGDVISVKDVLEVYT-- 293 (515)
T ss_pred HhhhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCc-----CcEEEEEEEcCCCccccCCCCCCccHHHHHHHcC--
Confidence 0 122334458999987 778888777899765543 3445555 33467899999999999999999763
Q ss_pred HHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhH
Q psy15414 886 SLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 936 (1458)
Q Consensus 886 a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~ 936 (1458)
-+++||++++.++.++++||++.+
T Consensus 294 ---------------------------pdalR~~~l~~~~~~~ldFd~~~l 317 (515)
T TIGR00467 294 ---------------------------PEITRFLFARTKPEFHISFDLDVI 317 (515)
T ss_pred ---------------------------HHHHHHHHhccCCCCCCcCCHHHH
Confidence 135899999999999999999965
No 72
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.49 E-value=2.4e-13 Score=164.12 Aligned_cols=192 Identities=14% Similarity=0.134 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhCCEEec-ccccccchhHHHHHHHHHHcCCeEee----------------CCc------EE--------
Q psy15414 727 SRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLELD----------------DGR------KI-------- 775 (1458)
Q Consensus 727 s~~~f~~~y~~L~i~f~~-~geS~~~~~v~~vi~~L~~kG~~ye~----------------dGa------~~-------- 775 (1458)
+++.+.++++.||+.++. ..+|...+...+++++|+++|++|.. .|. .|
T Consensus 53 ~~~~I~e~L~wLGI~~De~y~QSer~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~ 132 (445)
T PRK12558 53 YADAIAEDLKWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEK 132 (445)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHH
Confidence 455677788888887763 33555446678888888888888830 110 01
Q ss_pred -------------EEcCCC--------------C---CCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCc
Q psy15414 776 -------------MWGEDR--------------G---SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 825 (1458)
Q Consensus 776 -------------~~~d~~--------------d---~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq 825 (1458)
+..++. + --+.||.|+||.|||.. |...+.. ..+.+++| .|.+|
T Consensus 133 ~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~f---A~vVDD~-~m~ITHVi--RG~d~ 206 (445)
T PRK12558 133 AALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTL---PSVVDDI-DMGITHII--RGEDH 206 (445)
T ss_pred HhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEecCCCccccc---cceeccc-cCCCCEEE--echhh
Confidence 101100 0 02578999999999985 4444544 25778888 99999
Q ss_pred cccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHH--HHHHHHHhhcCCCCC----C
Q psy15414 826 GVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL--RRSLDKLKDKNRHTE----L 899 (1458)
Q Consensus 826 ~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~--~~a~~~~~~~~~~~~----~ 899 (1458)
....+.+..+.++|||.. +.+.|++. +++.+|+|+|||.|. +++.++.+.+. +...+.+...|.... +
T Consensus 207 l~~t~~q~~l~~alg~~~---P~f~H~pl--i~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~ 280 (445)
T PRK12558 207 VTNTAVQIQIFEALGAKP---PVFAHLSL--LTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYT 280 (445)
T ss_pred hhCCHHHHHHHHHhCCCC---CeEEEccc--ccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccC
Confidence 999999999999999854 47889988 778899999999985 68888887632 334566655553211 2
Q ss_pred ChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhc
Q psy15414 900 TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 900 ~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~ 941 (1458)
+.+| .+..|.+..-..++..||.+++..+|+
T Consensus 281 ~~~e-----------li~~F~l~~~~~~~~~fd~~KL~w~N~ 311 (445)
T PRK12558 281 SMEE-----------LAESFDLSSFSRAPAKFDPEDLERLNA 311 (445)
T ss_pred CHHH-----------HHHhCCHhhCCCccccCCHHHHHHHHH
Confidence 3322 245677877777899999999988864
No 73
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.45 E-value=5.1e-11 Score=159.46 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCC-C---CCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 579 SRVYAGEQIKDIIVNGVQPPT-L---NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 579 ~~~~~~~~l~~i~~~g~~~~~-~---~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
+.......+.+..++...|.. . ..+++.++.-.-||++|.+||||+++.++-|+++|+.+..||+|.+....+.+|
T Consensus 73 ~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hG 152 (1205)
T PTZ00427 73 NIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHG 152 (1205)
T ss_pred CHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCC
Confidence 344444445444444333321 1 234557888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q psy15414 655 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKI 734 (1458)
Q Consensus 655 ~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~ 734 (1458)
..+...+.... +-. + ...+.++ .-+.|.+.++ .++..+...+.+.
T Consensus 153 lPiE~~vEk~l---g~~-~-k~~i~~~------------g~~~f~e~c~------------------~~~~~~~~~~~~~ 197 (1205)
T PTZ00427 153 LPIEYEIEKEN---NIN-K-KEDILKM------------GIDVYNEKCR------------------GIVLKYSNEWVKT 197 (1205)
T ss_pred cHHHHHHHHHh---CCC-c-ccchhhc------------CHHHHHHHHH------------------HHHHHHHHHHHHH
Confidence 99875543211 100 0 0011111 0112333333 2344556667777
Q ss_pred HHHhCCEEeccc-----ccccchhHHHHHHHHHHcCCeE
Q psy15414 735 YDRLNVTLTERG-----ESFYQKHMEQLVPYLEKKGLLE 768 (1458)
Q Consensus 735 y~~L~i~f~~~g-----eS~~~~~v~~vi~~L~~kG~~y 768 (1458)
+.+||+++++.. +..|...+..++.+|.++|++|
T Consensus 198 ~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIY 236 (1205)
T PTZ00427 198 VERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVY 236 (1205)
T ss_pred HHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 788887665421 2235567777888888888876
No 74
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.43 E-value=7.3e-11 Score=154.62 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=92.6
Q ss_pred ceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecC-CC
Q psy15414 847 TRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NR 925 (1458)
Q Consensus 847 ~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~-~~ 925 (1458)
..+.|.+| | |||||+||+|++.|++++++ .+++||++++. ++
T Consensus 561 k~v~~~G~--v------KMSKS~GN~i~p~~~i~~yg-----------------------------aD~lRl~l~~~~~~ 603 (805)
T PRK00390 561 KKLLTQGM--V------KMSKSKGNVVDPDDIIEKYG-----------------------------ADTARLFEMFAGPP 603 (805)
T ss_pred hhheecCc--E------EeCCCCCCCCCHHHHHHHcC-----------------------------hHHHHHHHHhcCCc
Confidence 35566666 4 99999999999999999875 14589999884 67
Q ss_pred CCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15414 926 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDL 1005 (1458)
Q Consensus 926 ~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~ 1005 (1458)
+.|++|+.+.+... +..+.|+.+.++......... + ..+ .+.++.++..+.++...+.++++++
T Consensus 604 ~~d~~~s~~~l~~~--------~~~l~kl~~~~~~~~~~~~~~------~-~~~-~~~D~~il~~l~~~i~~v~~~~e~~ 667 (805)
T PRK00390 604 EKDLEWSDSGVEGA--------YRFLQRVWRLVVDAKGEAGAL------D-VAA-LSEDKELRRKLHKTIKKVTEDIERL 667 (805)
T ss_pred cCCcccCHHHHHHH--------HHHHHHHHHHHHHhhhccccc------C-ccc-ChhhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999998876543 122345555555421110000 0 111 2456788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q psy15414 1006 CLHHLCEYLYDISTAFSEFY 1025 (1458)
Q Consensus 1006 ~p~~l~~yL~~LA~~fN~fy 1025 (1458)
+++.++..|+++...+++||
T Consensus 668 ~f~~ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 668 RFNTAIAALMELVNALYKAE 687 (805)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988
No 75
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.42 E-value=6.7e-11 Score=155.27 Aligned_cols=119 Identities=10% Similarity=0.052 Sum_probs=81.9
Q ss_pred ccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecC-CCCCccccchhhHHhhhcC
Q psy15414 864 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLDYVFSFDKMLDDRGN 942 (1458)
Q Consensus 864 KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~-~~~~d~~Fd~d~~l~~n~n 942 (1458)
|||||+||+|+|.|++++++ .+++||++++. ++..+.+|+.+.+....
T Consensus 604 KMSKS~GN~v~p~~ii~~yg-----------------------------aDalRl~~l~~~~~~~d~~~~~~~l~~~~-- 652 (842)
T TIGR00396 604 KMSKSKGNGIDPQEIVKKHG-----------------------------ADALRLYIMFMGPIAASLEWNDSGLEGAR-- 652 (842)
T ss_pred hhhhcCCCcCCHHHHHHHcC-----------------------------chHHHHHHHhcCCcCCCCccCHHHHHHHH--
Confidence 99999999999999999875 24689999864 66899999988865431
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHH
Q psy15414 943 TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC-LHHLCEYLYDISTAF 1021 (1458)
Q Consensus 943 ~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~-p~~l~~yL~~LA~~f 1021 (1458)
..+.|+.++++........... .+...+ .+.++.|+..+.++...+.++++++. ++.+++.++++...+
T Consensus 653 ------~~l~kl~~~~~~~~~~~~~~~~---~~~~~l-~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L 722 (842)
T TIGR00396 653 ------RFLDRVWNLFYNILGELDGKTY---LTPTIL-EEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNAL 722 (842)
T ss_pred ------HHHHHHHHHHHHHHhhhccccc---CCcccC-CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1223444444432100000000 001112 35678899999999999999999977 999999999998655
Q ss_pred Hh
Q psy15414 1022 SE 1023 (1458)
Q Consensus 1022 N~ 1023 (1458)
++
T Consensus 723 ~~ 724 (842)
T TIGR00396 723 YK 724 (842)
T ss_pred Hh
Confidence 54
No 76
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.41 E-value=4.6e-13 Score=127.34 Aligned_cols=83 Identities=41% Similarity=0.657 Sum_probs=65.2
Q ss_pred HHHHHHhhhhhhcc-cccCCcceeEeecCcccccccccchhchHHHHHHHHhhcCCCCChhhHHHHHHHhhcccccCCcc
Q psy15414 480 YLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 558 (1458)
Q Consensus 480 ~L~ell~dAi~~a~-~~~~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~~~P~~IA~~i~~~i~~~l~~~~~ 558 (1458)
.|++.+.+++..++ .......+.++.|+++ ++|||++|.||.+||.++ ++|.+||++|++. |..+
T Consensus 2 ~l~~~i~~~l~~~~~~~~~~~~~~i~~~~~~---~~GD~~~n~a~~lak~~k-----~~P~~iA~~i~~~----l~~~-- 67 (85)
T PF03485_consen 2 QLKKAISEALKKAFGIDLEEIEIQIEKPPNP---KFGDYQTNIAFRLAKKLK-----KNPREIAEEIAEK----LEKS-- 67 (85)
T ss_dssp HHHHHHHHHHHHCHSTTCCCHGGGEEE-SSG---GG-SEEEEHHHHHHHHTT-----S-HHHHHHHHHHC----HCTT--
T ss_pred hHHHHHHHHHHHHhcccccccceEEEcCCCC---CceeeeccchHHHHHHcC-----CCHHHHHHHHHHh----cCCC--
Confidence 45667777777764 2223335667778888 999999999999999997 8999999999999 7665
Q ss_pred cccceeEEEEeCCceEEEEe
Q psy15414 559 LAKVIDKIEVAKPGFVNVFL 578 (1458)
Q Consensus 559 ~~~~i~~vevagpGfiN~~l 578 (1458)
+.|++|+|+|||||||+|
T Consensus 68 --~~i~~vev~gpGFiN~~L 85 (85)
T PF03485_consen 68 --PIIEKVEVAGPGFINFFL 85 (85)
T ss_dssp --TTEEEEEEETTTEEEEEE
T ss_pred --CCEEEEEEcCCcEEEEeC
Confidence 579999999999999997
No 77
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.32 E-value=4.6e-12 Score=155.89 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhccccC-eeEeccccchhHHHHHHHHHHHHHCCCeec----------------c-------CCC---c
Q psy15414 1349 MICDVSRRDFQKIYDRLN-VTLTERGESFYQKHMEQLVPYLEKKGLLEL----------------D-------DGR---K 1401 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d-~~f~esges~~~~~v~~~~~~L~~~G~~Ye----------------~-------~ga---~ 1401 (1458)
.+.+.|.+||+|+|+.|| ..+.|| .+. +.|.+++++|.++|++|. . +|. +
T Consensus 51 ~~~~~i~~~L~wlGl~~de~~~~QS--~r~-~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l 127 (470)
T TIGR00464 51 EAEEAILEGLKWLGISWDEGPYYQS--QRL-DIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNL 127 (470)
T ss_pred HHHHHHHHHHHHCCCCCCCCeeehh--CCH-HHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccC
Confidence 356799999999999999 688888 664 678999999999999994 0 111 0
Q ss_pred ----------------ccc----------ccc---------CCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEE
Q psy15414 1402 ----------------IMW----------GED---------RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 1446 (1458)
Q Consensus 1402 ----------------~~~----------gdd---------kdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~ 1446 (1458)
+-| -|- .+....||+||||+|||. +|||.+++. +|+++||+
T Consensus 128 ~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~---~A~~vdD~~-~~ithvIr 203 (470)
T TIGR00464 128 HEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILRSDGSPTYN---FAVVVDDYL-MKITHVIR 203 (470)
T ss_pred CHHHHHhHHhcCCCceEEEEcCCCCceeEEecccceEEecCccCCCeEEEecCCCcccc---cHHHHHHHh-CCCCEEEE
Confidence 001 000 111124999999999998 999999996 89999999
Q ss_pred eecccccccc
Q psy15414 1447 VTDHRSYHQV 1456 (1458)
Q Consensus 1447 ~~dhhg~~~~ 1456 (1458)
|+||+++.++
T Consensus 204 G~d~~~~t~~ 213 (470)
T TIGR00464 204 GEDHISNTPK 213 (470)
T ss_pred CchhhcCHHH
Confidence 9999998765
No 78
>KOG1247|consensus
Probab=99.32 E-value=6.9e-12 Score=143.21 Aligned_cols=333 Identities=15% Similarity=0.168 Sum_probs=210.7
Q ss_pred CCceEEEEeeCCccCCccccchhhHHHH-HHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhH
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTII-GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 680 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsaiI-GD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~ 680 (1458)
....++|--.-|-++.-.|+|+.-..++ +|+.+|+.++.|+...++...+.+|+....-+ +
T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetka--l---------------- 73 (567)
T KOG1247|consen 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKA--L---------------- 73 (567)
T ss_pred CccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHH--H----------------
Confidence 4567899888999999999999888777 99999999999999999999999998554211 1
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccccc--cc-chhHHHH
Q psy15414 681 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES--FY-QKHMEQL 757 (1458)
Q Consensus 681 l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~geS--~~-~~~v~~v 757 (1458)
|+|= --+.+|+.+..-+...|+.++|+|++.|.+ .. .+..+.+
T Consensus 74 -----------------------------eeg~-----tP~elcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~i 119 (567)
T KOG1247|consen 74 -----------------------------EEGL-----TPQELCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDI 119 (567)
T ss_pred -----------------------------HccC-----CHHHHHHhcchhHHHHHHhhcccccccCcccCcchhHHHHHH
Confidence 1110 012457777778899999999999875433 22 3567889
Q ss_pred HHHHHHcCCeEeeCCc-EEE----------E--------------cCCCC--C---------CC-cEEEcC---------
Q psy15414 758 VPYLEKKGLLELDDGR-KIM----------W--------------GEDRG--S---------IP-MTIVKS--------- 791 (1458)
Q Consensus 758 i~~L~~kG~~ye~dGa-~~~----------~--------------~d~~d--~---------~~-~vL~ks--------- 791 (1458)
+.+|-++|++-+..=. +++ + +|.+| | .| +.+.++
T Consensus 120 F~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h 199 (567)
T KOG1247|consen 120 FSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQH 199 (567)
T ss_pred hhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeE
Confidence 9999999987543211 111 0 11111 0 01 001110
Q ss_pred --------------------------------------CC-CccCCCcchHHH----HHHhhhcCCCeEEEEeeCCcccc
Q psy15414 792 --------------------------------------DG-GFTYDTSDLAAI----RQRIEEEKADWIVYVTDLGQGVH 828 (1458)
Q Consensus 792 --------------------------------------DG-t~tY~trDiA~~----~~k~~~~~~d~iIyVvg~dq~~h 828 (1458)
|| .|--.|||+-+- +.++ -|+++|||...-.+|
T Consensus 200 ~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle~f----k~KVfYVWFDA~IGY 275 (567)
T KOG1247|consen 200 LFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLEKF----KDKVFYVWFDAPIGY 275 (567)
T ss_pred EEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChhhh----cccEEEEEEcCcceE
Confidence 11 011122332110 1111 279999999998877
Q ss_pred HHHHHH----------------HHHHcCCCCCC-------------cceEE---EEEe-EEEecCCCcccccccCCccch
Q psy15414 829 FRLLEE----------------CAKKAGILNPN-------------KTRMD---FVGF-GVVLGEDRKKFKTRSGDTVKL 875 (1458)
Q Consensus 829 f~~l~~----------------il~alG~~~~~-------------~~~~~---H~~f-g~V~~~~G~KMSKR~GnvI~l 875 (1458)
...... ..+.||..+.. ..+|. |+.- ..+. -+..|+|||+|-.|+=
T Consensus 276 lsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYLn-yE~gKFSKSrgvGvFG 354 (567)
T KOG1247|consen 276 LSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYLN-YEDGKFSKSRGVGVFG 354 (567)
T ss_pred EEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhhhc-cccCcccccccccccc
Confidence 543221 44556631100 00111 1110 1111 2445999999988876
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCccccchhhHHhh-hcCcHHHHHHHHHH
Q psy15414 876 SELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLDD-RGNTAVYLLYAYTR 953 (1458)
Q Consensus 876 ~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~~Fd~d~~l~~-n~n~g~ylqYa~aR 953 (1458)
.+.-+. .+++ +..||++|+..| .+|..|+|+.++.. |+++-+-|++-.+|
T Consensus 355 ~~aqd~----------------gi~~------------~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR 406 (567)
T KOG1247|consen 355 NDAQDT----------------GIPA------------SVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNR 406 (567)
T ss_pred cccccC----------------CCCH------------HHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 555442 2222 348999999999 79999999998874 55333333333379
Q ss_pred HHHHHHH-hCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc
Q psy15414 954 IASIART-AGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1029 (1458)
Q Consensus 954 i~SIlrK-~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~ 1029 (1458)
+.+++.. +++. +|. ..+++ .+..|+..+..+.....++++.-.....++-++++++..|.|.+...
T Consensus 407 ~l~fv~~~~~g~---Vp~------~~~~~-~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~ 473 (567)
T KOG1247|consen 407 VLKFVAAKYNGV---VPE------MELTS-GDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENT 473 (567)
T ss_pred HHHHHHHhhCCc---ccc------eeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccc
Confidence 9988764 4432 332 23332 36678888888888888888888888999999999999999999875
No 79
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.31 E-value=9.7e-12 Score=149.70 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=98.6
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
+.||+|+||.|||.. |...+... .+.+++| .|.||..-.+.+..+.+++||..| +.+.|+++ +++.+|+|
T Consensus 166 D~Vi~R~Dg~PtY~f---A~vVDD~~-mgIThVi--RG~d~l~~tp~Qi~Ly~aLg~~~p--p~f~Hlpl--i~~~~g~K 235 (433)
T PRK12410 166 SFVILRADKTPTYNF---ACAVDDML-YDISLII--RGEDHVSNTPKQILIREALGYNKE--ITYAHLPI--ILNEEGKK 235 (433)
T ss_pred CeEEEcCCCCccccc---cchhchhh-cCCCEEE--echhhhhCcHHHHHHHHHcCCCCC--CeEEEeee--eeCCCCCe
Confidence 478999999999974 44455542 5788888 999999999999999999999532 36889998 77889999
Q ss_pred cccccCCccchHHHHHHHH--HHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhc
Q psy15414 865 FKTRSGDTVKLSELLDEGL--RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 865 MSKR~GnvI~l~DLLde~~--~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~ 941 (1458)
||||.| ..++.++.+.+. +...+.+...|... ++|+....+. +..|.+.....++..||++++..+|+
T Consensus 236 LSKR~~-~~~v~~~r~~G~~PeAi~n~l~~lG~~~---~~e~~~~~el-----i~~F~~~~i~~~~~~~d~~kL~~~N~ 305 (433)
T PRK12410 236 MSKRDN-ASSVKWLLEQGFLPSAIANYLILLGNKT---PKEIFTLEEA-----IEWFDIEKISKSPAKFDLKKLRFINR 305 (433)
T ss_pred eecccC-hhhHHHHHHCCCCHHHHHHHHHHhCCCC---cccccCHHHH-----HHhCCHhhCCCccccCCHHHHHHHHH
Confidence 999999 457888877532 33455555444221 1222122222 45567777777888999999887763
No 80
>PLN02627 glutamyl-tRNA synthetase
Probab=99.31 E-value=9.1e-12 Score=152.23 Aligned_cols=139 Identities=14% Similarity=0.165 Sum_probs=99.6
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
+.||+|+||.|||.. |...+.. ..+.+++| .|.||..-.+++..+.++|||.. +.+.|++. |++.+|+|
T Consensus 225 D~Vi~R~DG~PtY~f---A~vVDD~-~mgITHVi--RG~D~l~nTpkQi~ly~aLg~~~---P~f~Hlpl--i~~~~g~K 293 (535)
T PLN02627 225 DFVLLRSNGQPVYNF---CVAVDDA-TMGITHVI--RAEEHLPNTLRQALIYKALGFPM---PRFAHVSL--ILAPDRSK 293 (535)
T ss_pred CeEEEecCCCccccc---cceeccc-ccCCcEEE--echhhhcChHHHHHHHHHcCCCC---CeEEEccc--eeCCCCCc
Confidence 578999999999974 4444544 25788888 99999999999999999999954 46889988 77889999
Q ss_pred cccccCCccchHHHHHHHH--HHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhc
Q psy15414 865 FKTRSGDTVKLSELLDEGL--RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 865 MSKR~GnvI~l~DLLde~~--~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~ 941 (1458)
||||.|. +++.++.+... +...+.+...|-...- .+|+....+. +..|.+..-..++..||.+++..+|+
T Consensus 294 LSKR~~~-~~v~~~r~~G~~PeAi~nyla~LGws~~~-~~e~~~~~el-----i~~F~l~~v~~s~~~fD~~KL~wlN~ 365 (535)
T PLN02627 294 LSKRHGA-TSVGQFREMGYLPDAMVNYLALLGWNDGT-ENEIFTLEEL-----VEKFSIDRINKSGAVFDSTKLKWMNG 365 (535)
T ss_pred cccccCC-ccHHHHHHCCCCHHHHHHHHHHhCCCCCC-CCCcCCHHHH-----HHhCCHhhCCCcccccCHHHHHHHHH
Confidence 9999984 57888877632 2345555544421110 1111112222 45677777777899999999998874
No 81
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.27 E-value=6.4e-12 Score=154.67 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhccccCee--------EeccccchhHHHHHHHHHHHHHCCCeec----------------cCC-----
Q psy15414 1349 MICDVSRRDFQKIYDRLNVT--------LTERGESFYQKHMEQLVPYLEKKGLLEL----------------DDG----- 1399 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~~--------f~esges~~~~~v~~~~~~L~~~G~~Ye----------------~~g----- 1399 (1458)
.+.+.|.+||+|+|+.||.- |.|| .+. +.|.+++++|.++|++|. ..|
T Consensus 54 ~~~~~i~~~L~wlGl~~De~p~~~~~gpy~QS--~r~-~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y 130 (476)
T PRK01406 54 EAEEAILEGLKWLGLDWDEGPDGGPYGPYRQS--ERL-DIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRY 130 (476)
T ss_pred HHHHHHHHHHHHCCCCCCCCCccCCCCceehh--cCH-HHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCC
Confidence 46689999999999999954 8888 764 689999999999999996 111
Q ss_pred --C-----------------c--cc---------------ccc-------cCCCCCceEEecCCccccchhhh-HHHHhh
Q psy15414 1400 --R-----------------K--IM---------------WGE-------DRGSIPMTIVKSDGGFTYDTSDL-AAIRQR 1435 (1458)
Q Consensus 1400 --a-----------------~--~~---------------~gd-------dkdr~~~vl~rsdG~~tY~~~Di-ayh~~K 1435 (1458)
. . +- .|+ -.|. ||+||||+|||..+|| ++|..+
T Consensus 131 ~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~---Vl~RsDG~ptY~~a~vVdD~~~~ 207 (476)
T PRK01406 131 DGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNSELDDF---VILRSDGTPTYNFAVVVDDHLMG 207 (476)
T ss_pred CccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceEEEEeccceEEeccccCCCc---EEEecCCCccccchHHHHHHHcC
Confidence 1 0 10 111 0344 9999999999999999 999874
Q ss_pred hhhcCCCEEEEeecccccccc
Q psy15414 1436 IEEEKADWIVYVTDHRSYHQV 1456 (1458)
Q Consensus 1436 ~~~rgfd~~i~~~dhhg~~~~ 1456 (1458)
+++||+|+||+.+.++
T Consensus 208 -----ithvIrG~d~~~~t~~ 223 (476)
T PRK01406 208 -----ITHVIRGEDHLSNTPK 223 (476)
T ss_pred -----CCEEEECchhhcCHHH
Confidence 5999999999998765
No 82
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.25 E-value=7.1e-11 Score=132.48 Aligned_cols=210 Identities=18% Similarity=0.150 Sum_probs=138.1
Q ss_pred CCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhc
Q psy15414 612 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 691 (1458)
Q Consensus 612 SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~ 691 (1458)
.|+|||+||+||+|++++.-..+|- +.| ..+--|.|.-. +. .
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~--~~G---~~ilRieDtd~--------------~r-----~-------------- 48 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK--HGG---KFILRIEDTDQ--------------ER-----S-------------- 48 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCC---eEEEEECcCCC--------------CC-----C--------------
Confidence 5999999999999999998888875 233 34444555210 00 0
Q ss_pred cCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec----------ccccccchhHHHHHHHH
Q psy15414 692 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE----------RGESFYQKHMEQLVPYL 761 (1458)
Q Consensus 692 ~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~----------~geS~~~~~v~~vi~~L 761 (1458)
.++ +.+.+.++++.||+..+. ...|.+.+...+++++|
T Consensus 49 ---~~~-----------------------------~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~~y~~~~~~L 96 (239)
T cd00808 49 ---VPE-----------------------------AEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERLEIYRKYAEKL 96 (239)
T ss_pred ---chH-----------------------------HHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHHHHHHHHHHH
Confidence 000 123345556677775542 12344455677788888
Q ss_pred HHcCCeEeeCCcEEEEcCCCCCCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCC
Q psy15414 762 EKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGI 841 (1458)
Q Consensus 762 ~~kG~~ye~dGa~~~~~d~~d~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~ 841 (1458)
.++| ||.|||.. |...+... .+.+++| +|.||..+.++...+++++|+
T Consensus 97 ~~~g--------------------------dg~ptY~~---a~~vDD~~-~~ithVi--RG~D~~~~t~~q~~l~~aLg~ 144 (239)
T cd00808 97 LEKG--------------------------DGFPTYHL---ANVVDDHL-MGITHVI--RGEEHLSSTPKQILLYEALGW 144 (239)
T ss_pred HHcC--------------------------CCCccccc---HHHHhHHh-cCCCEEE--EChhhhhChHHHHHHHHHcCC
Confidence 8777 68889985 44445542 5788885 999999999999999999998
Q ss_pred CCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHH--HHHHHHHhhcCCCC-----CCChhhhHHHHHhhhhh
Q psy15414 842 LNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL--RRSLDKLKDKNRHT-----ELTPTELSEAQQAVAYG 914 (1458)
Q Consensus 842 ~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~--~~a~~~~~~~~~~~-----~~~~ee~~~~ad~v~~~ 914 (1458)
.. ..+.|++. +.+.+|.|||||.|+ .++..+.++.. +.....+...|... .+++++
T Consensus 145 ~~---p~~~h~pl--l~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~----------- 207 (239)
T cd00808 145 EP---PKFAHLPL--ILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEE----------- 207 (239)
T ss_pred CC---CceEeecc--ccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHH-----------
Confidence 54 35678776 567789999999998 68888766432 11233343333211 122221
Q ss_pred heeeeeecCCCCCccccchhhHHhhh
Q psy15414 915 CIKYADLSHNRNLDYVFSFDKMLDDR 940 (1458)
Q Consensus 915 alRy~lLs~~~~~d~~Fd~d~~l~~n 940 (1458)
.+..|.+..-..++..||++++..+|
T Consensus 208 l~~~f~~~~~~~~~~~~d~~kL~~~n 233 (239)
T cd00808 208 LIELFDLERVSKSPAIFDPEKLDWLN 233 (239)
T ss_pred HHhcCCHhhCCcCcCcCCHHHHHHHH
Confidence 14456666666788899999987775
No 83
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.25 E-value=2.3e-11 Score=148.56 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhccccC-eeEeccccchhHHHHHHHHHHHHHCCCeecc-----------------------C------
Q psy15414 1349 MICDVSRRDFQKIYDRLN-VTLTERGESFYQKHMEQLVPYLEKKGLLELD-----------------------D------ 1398 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d-~~f~esges~~~~~v~~~~~~L~~~G~~Ye~-----------------------~------ 1398 (1458)
.+.+.|.+||+|+|+.|| ..+.|| .+. +.|.+++++|.+.|++|.- +
T Consensus 54 ~~~~~i~~~L~WLGl~wDe~py~QS--eR~-~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~ 130 (513)
T PRK14895 54 EAVEAIFSGLKWLGLDWNGEVIFQS--KRN-NLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDK 130 (513)
T ss_pred HHHHHHHHHHHHcCCCCCCCceeEe--CcH-HHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhccc
Confidence 356799999999999999 578888 664 6899999999999999950 0
Q ss_pred -------CC--cc----------cc-----c-------ccCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEe
Q psy15414 1399 -------GR--KI----------MW-----G-------EDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 1447 (1458)
Q Consensus 1399 -------ga--~~----------~~-----g-------ddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~ 1447 (1458)
|. .+ .| | +-.|. ||+||||+|||..+ ++.+++. +|+++||.|
T Consensus 131 ~~~~~~~~~~~~iR~k~p~~~~~~~~D~v~G~~~~~~~~~~D~---Vi~RsDG~ptY~~a---~vVDD~~-m~ithVIRG 203 (513)
T PRK14895 131 DPSIYPTDIKPVIRLKTPREGSITIHDTLQGEVVIENSHIDDM---VLLRADGTATYMLA---VVVDDHD-MGITHIIRG 203 (513)
T ss_pred ChhhhhcCCCeeEEEEcCCCCceEEEeecccceecccccCCCc---EEEEeCCCcchhhH---HHHHHHh-cCCCEEEEC
Confidence 00 00 01 1 11344 99999999999987 9999996 899999999
Q ss_pred ecccccccc
Q psy15414 1448 TDHRSYHQV 1456 (1458)
Q Consensus 1448 ~dhhg~~~~ 1456 (1458)
.||+.+.++
T Consensus 204 ~d~~~~t~~ 212 (513)
T PRK14895 204 DDHLTNAAR 212 (513)
T ss_pred chHhhhHHH
Confidence 999987654
No 84
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.25 E-value=7.1e-11 Score=131.98 Aligned_cols=167 Identities=13% Similarity=-0.027 Sum_probs=119.8
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhh
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 689 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~ 689 (1458)
=|.|+|||+|||||+|++++.+.++| +|++..+-.|.|.-... +
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r--------------------~----------- 48 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT--------------------K----------- 48 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc--------------------c-----------
Confidence 37899999999999999999999999 78888888898862111 0
Q ss_pred hccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-ccccccchhHHHHHHHHHHcCCeE
Q psy15414 690 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLE 768 (1458)
Q Consensus 690 ~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS~~~~~v~~vi~~L~~kG~~y 768 (1458)
.. ...+.+.+.++++.||+..++ ...|.+.+...+++++|.++|++|
T Consensus 49 ---~~-----------------------------~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~~y~~~~~~Li~~G~aY 96 (240)
T cd09287 49 ---RP-----------------------------DPEAYDMIPEDLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGAY 96 (240)
T ss_pred ---cc-----------------------------hHHHHHHHHHHHHHcCCCCCCccchhccHHHHHHHHHHHHHcCCcc
Confidence 00 011223467778889985542 235677788899999999999999
Q ss_pred eeCCcEEEEcCCCCCCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcce
Q psy15414 769 LDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 848 (1458)
Q Consensus 769 e~dGa~~~~~d~~d~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~ 848 (1458)
.. +... .+.++ .|+|. +|...+... .+.+++| .|.|+....++...+.+++|+.. +.
T Consensus 97 ~~--------~~~~-~~~~i-----~ptY~---la~vVDD~~-~gIThVi--Rg~d~~~~t~~q~~l~~~Lg~~~---P~ 153 (240)
T cd09287 97 VH--------PRTG-SKYRV-----WPTLN---FAVAVDDHL-LGVTHVL--RGKDHIDNTEKQRYIYEYFGWEY---PE 153 (240)
T ss_pred cC--------cccC-CcEEE-----EEccc---cceeeeccc-cCCCeEE--echhhhhCCHHHHHHHHHcCCCC---Cc
Confidence 61 1101 12333 27775 344445442 5778887 99999999999999999999854 46
Q ss_pred EEEEEeEEEecCCCcccccccC
Q psy15414 849 MDFVGFGVVLGEDRKKFKTRSG 870 (1458)
Q Consensus 849 ~~H~~fg~V~~~~G~KMSKR~G 870 (1458)
+.|++. +++ +|+|||||.+
T Consensus 154 ~~H~pl--l~~-~~~kLSKR~~ 172 (240)
T cd09287 154 TIHWGR--LKI-EGGKLSTSKI 172 (240)
T ss_pred EEeeee--ecC-CCCeeccccc
Confidence 778888 444 5799999995
No 85
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.22 E-value=9.7e-11 Score=155.69 Aligned_cols=172 Identities=13% Similarity=0.079 Sum_probs=116.3
Q ss_pred EEEEeeCCccc-cHHHHHHHHHH-cCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcC
Q psy15414 817 IVYVTDLGQGV-HFRLLEECAKK-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 894 (1458)
Q Consensus 817 iIyVvg~dq~~-hf~~l~~il~a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~ 894 (1458)
-+|+.|.||.. .|.....+..+ .|. .|.. ..+.+|+|+..+|+|||||+||+|+|.+++++++
T Consensus 585 D~~~eG~Di~rgWF~s~ll~s~~~~~~-~P~k---~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yG----------- 649 (961)
T PRK13804 585 DLYLEGSDQHRGWFNSSLLESCGTRGR-APYK---AVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSG----------- 649 (961)
T ss_pred eEEEEEcccccHHHHHHHHHHHHhcCC-CChh---hEEEeccEECCCCCCccCCCCCcCCHHHHHHhcC-----------
Confidence 38999999874 45554322222 242 2332 2334466888899999999999999999999875
Q ss_pred CCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccC
Q psy15414 895 RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQS 974 (1458)
Q Consensus 895 ~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~ 974 (1458)
.+++||++++..+.+|++||++.+... .+..+.+.+++.++.+.+.++......++
T Consensus 650 ------------------aD~lRl~lls~~~~~D~~fs~~~l~~~-~~~~~kL~N~~rf~l~nl~~~~~~~~~~~----- 705 (961)
T PRK13804 650 ------------------ADILRLWVASVDYSDDQRIGKEILKQV-SETYRKLRNTLRWLLGNLAHFDPGEDVVA----- 705 (961)
T ss_pred ------------------HHHHHHHHHhCCCCCCcccCHHHHHHH-HHHHHHHHHHHHHHHhccccCCcccccCC-----
Confidence 246899999988899999999986542 23334455555333333332211100000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HH-HHhhhhhcc
Q psy15414 975 TPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TA-FSEFYDNCY 1029 (1458)
Q Consensus 975 ~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA-~~-fN~fy~~~~ 1029 (1458)
...+ .+.++.++..+.++.+.+.+++++++++.+++.+++++ .. .|.|++..+
T Consensus 706 -~~~~-~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K 760 (961)
T PRK13804 706 -YADL-PELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRK 760 (961)
T ss_pred -hhhc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1112 34567789999999999999999999999999999999 45 477777653
No 86
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.21 E-value=5.8e-11 Score=146.90 Aligned_cols=231 Identities=13% Similarity=0.048 Sum_probs=146.2
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
+++|+.- +.|+|+|+|||||+|++++-+.++| .|....+--|+|.-..+. .
T Consensus 99 ~g~V~tR-FaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~--------------------R--- 149 (567)
T PRK04156 99 KGKVVMR-FAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTK--------------------R--- 149 (567)
T ss_pred CCeEEEE-eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCcc--------------------c---
Confidence 4567665 8999999999999999999999999 566777777777521110 0
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-ccccccchhHHHHHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYL 761 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS~~~~~v~~vi~~L 761 (1458)
..+ .+.+.+.++++.||+..+. ...|.+.+...+++++|
T Consensus 150 -----------~~~-----------------------------e~~~~I~edL~wLGl~wD~~~~qSdr~~~y~~~a~~L 189 (567)
T PRK04156 150 -----------PDP-----------------------------EAYDMILEDLKWLGVKWDEVVIQSDRLEIYYEYARKL 189 (567)
T ss_pred -----------chH-----------------------------HHHHHHHHHHHHcCCCCCCccCcccCHHHHHHHHHHH
Confidence 000 0123456666777775432 22566777778888888
Q ss_pred HHcCCeEeeC------------C----------------------------cEEEE--cCCC-CC---CCcEEEcCCCC-
Q psy15414 762 EKKGLLELDD------------G----------------------------RKIMW--GEDR-GS---IPMTIVKSDGG- 794 (1458)
Q Consensus 762 ~~kG~~ye~d------------G----------------------------a~~~~--~d~~-d~---~~~vL~ksDGt- 794 (1458)
+++|++|... | ..++. .+.. .. -+.|+.|.+.+
T Consensus 190 i~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~ 269 (567)
T PRK04156 190 IEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTP 269 (567)
T ss_pred HHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCCC
Confidence 8888888421 1 11111 1100 00 13466665321
Q ss_pred --------ccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccc
Q psy15414 795 --------FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 866 (1458)
Q Consensus 795 --------~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMS 866 (1458)
..|.|=|+|...+.. ..|.+++| .|.+|...-++...++++|||.. +.+.|.+. ++ .+|.|||
T Consensus 270 h~~~Gd~~~i~PtY~fA~~VDD~-l~GITHVi--Rg~d~~~~t~~Q~~l~~~Lg~~~---P~~~H~~~--L~-~~g~kLS 340 (567)
T PRK04156 270 HPRVGDKYRVWPTYNFAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYDYFGWEY---PETIHYGR--LK-IEGFVLS 340 (567)
T ss_pred ccccCCCeEEEEEeccCceeeec-CCCCCeEE--cccccccChHHHHHHHHHcCCCC---ceEEEcce--ec-CCCceee
Confidence 123333556555544 25777777 89999999999999999999843 57889887 44 4788999
Q ss_pred ccc-------C--------CccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCccc
Q psy15414 867 TRS-------G--------DTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYV 930 (1458)
Q Consensus 867 KR~-------G--------nvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~~ 930 (1458)
||+ | +..++..|... | ++|+ |||.|+++... .++..
T Consensus 341 KR~~~~~i~~g~~~gWDDpr~~Tl~~lrrr------------G----~~Pe------------Ai~~fl~~lG~s~~~~~ 392 (567)
T PRK04156 341 TSKIRKGIEEGEYSGWDDPRLPTLRALRRR------------G----ILPE------------AIRELIIEVGVKETDAT 392 (567)
T ss_pred cccchhccccCccccccCCchHHHHHHHHc------------C----CCHH------------HHHHHHHHhCCCCCCcc
Confidence 999 3 22344444332 2 2332 46777777655 48999
Q ss_pred cchhhHHhh
Q psy15414 931 FSFDKMLDD 939 (1458)
Q Consensus 931 Fd~d~~l~~ 939 (1458)
|||+.+-+.
T Consensus 393 ~~~~~L~~~ 401 (567)
T PRK04156 393 ISWENLYAI 401 (567)
T ss_pred cCHHHHHHH
Confidence 999987654
No 87
>KOG0432|consensus
Probab=99.20 E-value=2.7e-08 Score=123.83 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=110.1
Q ss_pred eEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHH-----------hhhhhheeeeeec
Q psy15414 854 FGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ-----------AVAYGCIKYADLS 922 (1458)
Q Consensus 854 fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad-----------~v~~~alRy~lLs 922 (1458)
+|+|.+..|+|||||+||||+|.|+|+-.. ++.|.++-....++|.|++.... ..|.+|+||.+++
T Consensus 583 H~mVRDa~GRKMSKSLGNVIDPlDVI~Gis---le~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s 659 (995)
T KOG0432|consen 583 HGLVRDAHGRKMSKSLGNVIDPLDVIDGIS---LEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCS 659 (995)
T ss_pred chhhccccccccchhhccccCHHHHhcccc---HHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHH
Confidence 367888899999999999999999999653 22232222234578887765432 2488999999999
Q ss_pred CCC-CCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhcc-CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15414 923 HNR-NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQ-STPVSLEHEKEFALAKTLLRMNDVLML 1000 (1458)
Q Consensus 923 ~~~-~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~-~~~~~l~~~~e~~Ll~~l~~f~~~v~~ 1000 (1458)
... ..|+++|..++.... .-.|-|=++ .| -++...+... +|...+ ....... -+.-++..|....+.+..
T Consensus 660 ~~~~~~dInLDv~rv~g~r-~FcNKlWNa-~r--F~l~~lg~~~--~p~~~~~~~~~~~~--~d~WIlsrL~~av~~~~~ 731 (995)
T KOG0432|consen 660 YTTQGRDINLDVLRVEGYR-HFCNKLWNA-TR--FALQRLGENF--VPSPTEDLSGNESL--VDEWILSRLAEAVEEVNE 731 (995)
T ss_pred ccccCccccccHHHHhhHH-HHHHHHHHH-HH--HHHHhcccCC--CCCcccccCCCcch--hHHHHHHHHHHHHHHHHh
Confidence 766 799999988766410 011222111 11 1122222221 111100 0011110 233456677778888888
Q ss_pred HHHhhhHHHHHHHHHHH--HHHHHhhhhhcc-ccccccccccccchhHHHHHHHHHHHHHHHHhhhccc
Q psy15414 1001 VTRDLCLHHLCEYLYDI--STAFSEFYDNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066 (1458)
Q Consensus 1001 a~~~~~p~~l~~yL~~L--A~~fN~fy~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI 1066 (1458)
.++.++++.+++.++.. -.....|.+..+ ++..+. ...+-........+|.++|+||..
T Consensus 732 ~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~-------~~~~~~a~~vL~~~ld~gLrll~P 793 (995)
T KOG0432|consen 732 SLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDS-------EALAYEARRVLYRCLDNGLRLLHP 793 (995)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999998888644332 233344565554 442221 111222223444556666776654
No 88
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.18 E-value=7.1e-11 Score=131.48 Aligned_cols=168 Identities=15% Similarity=0.052 Sum_probs=112.2
Q ss_pred HHHHHHHHHhCCEEec--ccccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCCCCCCcEEEcCCCCccCCCcchHHHH
Q psy15414 729 RDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIR 806 (1458)
Q Consensus 729 ~~f~~~y~~L~i~f~~--~geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~d~~~~vL~ksDGt~tY~trDiA~~~ 806 (1458)
+.+.++++.||+..+. ...|.+.+.-.+.+++|.++| |.|+|. +|...
T Consensus 54 ~~I~~dL~wlGl~wd~~~~~QS~r~~~y~~~~~~L~~~g---------------------------g~p~Y~---la~vv 103 (230)
T cd00418 54 ESILEDLKWLGLDWDEGPYRQSDRFDLYRAYAEELIKKG---------------------------GYPLYN---FVHPV 103 (230)
T ss_pred HHHHHHHHHcCCCCCCCeeehhcCHHHHHHHHHHHHHcC---------------------------CCcccc---ccccc
Confidence 4456667788886652 224556667788899999888 667775 34444
Q ss_pred HHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHH--H
Q psy15414 807 QRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL--R 884 (1458)
Q Consensus 807 ~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~--~ 884 (1458)
+... .+.+++| .|.||....++...+++++|+.. +.+.|++. +++.+|+|||||.|+ .++.++.++.. +
T Consensus 104 DD~~-~gIThVi--RG~D~l~st~~q~~l~~~Lg~~~---P~~~H~pl--l~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ 174 (230)
T cd00418 104 DDAL-MGITHVL--RGEDHLDNTPIQDWLYEALGWEP---PRFYHFPR--LLLEDGTKLSKRKLN-TTLRALRRRGYLPE 174 (230)
T ss_pred cccc-cCCCEEE--ECHhhhhchHHHHHHHHHcCCCC---CeEEEeee--eeCCCCCCccCcCCC-cCHHHHHHCCCcHH
Confidence 5442 5788888 99999999999999999999844 46778877 677788999999997 67888766422 2
Q ss_pred HHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhc
Q psy15414 885 RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 885 ~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~ 941 (1458)
...+.+...|-.+. ++.++....+ .+..|.+..-..++..||++++..+|.
T Consensus 175 ai~~~l~~lG~~~~-~~~~~~~~~~-----li~~f~~~~~~~~~~~~d~~kL~~~N~ 225 (230)
T cd00418 175 ALRNYLALIGWSKP-DGHELFTLEE-----MIAAFSVERVNSADATFDWAKLEWLNR 225 (230)
T ss_pred HHHHHHHHcCCCCC-CCccccCHHH-----HHHhcCHhhCCCCCcccCHHHHHHHHH
Confidence 22334443332111 1111111222 244566776667888999999877753
No 89
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.15 E-value=4e-10 Score=149.92 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=116.2
Q ss_pred EEEEeeCCccc-cHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcC
Q psy15414 817 IVYVTDLGQGV-HFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 894 (1458)
Q Consensus 817 iIyVvg~dq~~-hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~ 894 (1458)
-+|+.|.||.. ||..+- ..+.+.|. .|...-|.| |+|+..+|+|||||+||+|+|.|+++.... +++
T Consensus 566 Dl~~eG~Di~rgWf~s~l~~~~~~~g~-~Pfk~v~~H---G~vld~~G~KMSKSlGNvI~p~~vi~~~~~-------~~~ 634 (974)
T PLN02843 566 DLYLEGSDQHRGWFQSSLLTSVATKGK-APYKSVLTH---GFVLDEKGFKMSKSLGNVVDPRLVIEGGKN-------QKQ 634 (974)
T ss_pred eeeeeeccccchHHHHHHHHHHHhcCC-CccceEEEe---ccEECCCCCCcCCCCCCcCCHHHHHhhccc-------ccc
Confidence 48889999775 444443 33334564 344444455 557878899999999999999999984310 000
Q ss_pred CCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccC
Q psy15414 895 RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQS 974 (1458)
Q Consensus 895 ~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~ 974 (1458)
. ...|.+++||++++.++.+|++||.+.+.+.. ..+.|+.+.+|-.-+......+....
T Consensus 635 -~------------~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~--------~~~~kl~n~~rf~lgnl~~~~~~~~~ 693 (974)
T PLN02843 635 -E------------PAYGADVLRLWVASVDYTGDVLIGPQILKQMS--------DIYRKLRGTLRYLLGNLHDWKPDNAV 693 (974)
T ss_pred -c------------cccChHHHHHHHHhcccCCCceeCHHHHHHHH--------HHHHHHHHHHHHHHhCccCCCccccc
Confidence 0 02345679999999999999999988765431 11223333332210000000000000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHhhhhhcc
Q psy15414 975 TPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI--STAFSEFYDNCY 1029 (1458)
Q Consensus 975 ~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~L--A~~fN~fy~~~~ 1029 (1458)
+...+ ...++-++..+.++.+.+.+++++++++.+++.+++. ....|.|++..+
T Consensus 694 ~~~~~-~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~K 749 (974)
T PLN02843 694 PYEDL-PSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAK 749 (974)
T ss_pred Ccccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcc
Confidence 01112 2457779999999999999999999999999999876 668889998774
No 90
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.13 E-value=6.2e-10 Score=147.53 Aligned_cols=196 Identities=12% Similarity=0.016 Sum_probs=131.4
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCC-CCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCC
Q psy15414 818 VYVTDLGQGVHFRLLEECAKKAGIL-NPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRH 896 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~alG~~-~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~ 896 (1458)
+++.|.||....--.+.++..+.+. .|+...+.+++| |+. +|+|||||+||+|+|.|++++++
T Consensus 533 ~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~--vl~-~G~KMSKS~GNvVdp~eii~~yG------------- 596 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGF--VLL-EGKKMSKSKGNVIPLRKAIEEYG------------- 596 (897)
T ss_pred EEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcce--EEE-CCccccCcCCCCCCHHHHHHHcC-------------
Confidence 7789999853211111222222221 233346666665 665 79999999999999999999875
Q ss_pred CCCChhhhHHHHHhhhhhheeeeeecC-CCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCC
Q psy15414 897 TELTPTELSEAQQAVAYGCIKYADLSH-NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQST 975 (1458)
Q Consensus 897 ~~~~~ee~~~~ad~v~~~alRy~lLs~-~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~ 975 (1458)
.+++||++++. ....|.+|+++.+.+. ++++ .|+.++.++..... +
T Consensus 597 ----------------aDalRl~L~~~~~~~~D~~fs~~~v~~~----~~~l----~r~~~~~~~~~~~~---~------ 643 (897)
T PRK12300 597 ----------------ADVVRLYLTSSAELLQDADWREKEVESV----RRQL----ERFYELAKELIEIG---G------ 643 (897)
T ss_pred ----------------hHHHHHHHHhCCCCCCCCccCHHHHHHH----HHHH----HHHHHHHHHHhcCC---C------
Confidence 24689999985 5689999999886543 3333 57877777652211 0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHhhhhhccccccccccccccchhHHHHHHHHHH
Q psy15414 976 PVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLY-DISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATA 1054 (1458)
Q Consensus 976 ~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~-~LA~~fN~fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~ 1054 (1458)
...+ ...++.++..+..+.+.+.+++++++++.++..++ .+...+|.|.+.++. ++.
T Consensus 644 ~~~~-~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~k~---------------------~~~ 701 (897)
T PRK12300 644 EEEL-RFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRVGE---------------------ANN 701 (897)
T ss_pred cccc-CHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcch---------------------HHH
Confidence 0112 24567788999999999999999999999998775 788889988765420 122
Q ss_pred HHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcC
Q psy15414 1055 KVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMN 1095 (1458)
Q Consensus 1055 ~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g 1095 (1458)
.+|.++|+.+.+ .|+|++|...+.+...+|
T Consensus 702 ~~l~~~l~~~~~-----------lLaPf~P~~aEeiw~~L~ 731 (897)
T PRK12300 702 KVLREVLEIWIR-----------LLAPFTPHLAEELWHKLG 731 (897)
T ss_pred HHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHcC
Confidence 334444444443 667788888888777765
No 91
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.11 E-value=1e-09 Score=129.00 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=89.6
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
++|+.|+||.|||. +|...+... .+.+++| .|.||....++...+.++||+.. +.+.|+.. +++.+|+|
T Consensus 175 D~vi~r~dg~ptY~---fA~vVDD~~-~gITHVi--RG~D~l~~t~~Q~~L~~~Lg~~~---P~~~H~pl--~l~~~g~k 243 (314)
T PF00749_consen 175 DFVIRRSDGYPTYH---FAVVVDDHL-MGITHVI--RGEDLLSSTPRQILLYEALGWPP---PPYAHLPL--ILNEDGKK 243 (314)
T ss_dssp TEEEESTTSEB-HH---HHHHHHHHH-TT-SEEE--EEGGGTTCHHHHHHHHHHCTSSS----EEEEEEE--EEETTSSB
T ss_pred chhccccccCcccc---cceeecccc-cccCeEE--EccccccccHHHHHHHHHhCCCC---cceEeeee--eecCCCcE
Confidence 58899999999997 677777763 5889998 99999999999999999999843 57889876 66789999
Q ss_pred cccccCCcc-chHHHHHHHH--HHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhH
Q psy15414 865 FKTRSGDTV-KLSELLDEGL--RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 936 (1458)
Q Consensus 865 MSKR~GnvI-~l~DLLde~~--~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~ 936 (1458)
+|||.|... .+.++.+... +...+.+...|- ++....++.... +.++.|+++....+...||.+++
T Consensus 244 LSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~----~~~~~~e~~~~~--~~~~~f~~~~~~~~~~~fd~~kL 312 (314)
T PF00749_consen 244 LSKRKGAKSIELGDYREWGDPPEATLNYLARLGW----SPEAIREFFSLD--ELIKQFDLSKISKSPAVFDRKKL 312 (314)
T ss_dssp SSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-----HCTHHCHHHHH--HHHHHC-GGGBHSSHEEHHHHHH
T ss_pred echhhccccccccccccCCCCHHHHHHHHHHhcC----CcchhhhhcCHH--HHHHHhhHhhccCchHHhCHHHh
Confidence 999999643 3666655432 224455555442 222222222221 23556666666667777776654
No 92
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.06 E-value=2.6e-10 Score=138.17 Aligned_cols=98 Identities=16% Similarity=0.287 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHCCCeec----------------cCCCc-------
Q psy15414 1345 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL----------------DDGRK------- 1401 (1458)
Q Consensus 1345 ~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~G~~Ye----------------~~ga~------- 1401 (1458)
+.+..+++.|++||+|+|+.||.|++|| +++ +.|++++++|.++|++|+ +.|..
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~De~y~QS--er~-~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~c 124 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINWDRTFRQS--DRF-DRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAA 124 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCCCccccHH--HHH-HHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCccc
Confidence 3445688999999999999999999999 887 589999999999999995 01110
Q ss_pred -------------------c---------cc-----c-------ccCCCCCceEEecCCccccchhhhHHHHhhhhhcCC
Q psy15414 1402 -------------------I---------MW-----G-------EDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKA 1441 (1458)
Q Consensus 1402 -------------------~---------~~-----g-------ddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgf 1441 (1458)
| .| | .-.| .||.|+||+|||.-+ --.+-.. .|-
T Consensus 125 r~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D---~Vi~R~dg~PtY~fA---~vVDD~~-m~I 197 (445)
T PRK12558 125 LKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSD---PVLIRADGSYLYTLP---SVVDDID-MGI 197 (445)
T ss_pred ccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCC---eEEEecCCCcccccc---ceecccc-CCC
Confidence 0 01 1 0123 399999999999654 4556664 799
Q ss_pred CEEEEeecccc
Q psy15414 1442 DWIVYVTDHRS 1452 (1458)
Q Consensus 1442 d~~i~~~dhhg 1452 (1458)
++||.|.||.-
T Consensus 198 THViRG~d~l~ 208 (445)
T PRK12558 198 THIIRGEDHVT 208 (445)
T ss_pred CEEEechhhhh
Confidence 99999999864
No 93
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.06 E-value=3.9e-10 Score=128.88 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=63.2
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
+.||.|+||.|||.. |...+... .+.+++| .|.||....++...+.++|||.. +.+.|++. +++.+|+|
T Consensus 161 D~vi~R~Dg~ptY~f---A~vVDD~~-~gIThVi--RG~D~l~~t~~q~~l~~aLg~~~---P~y~H~pl--l~~~~g~k 229 (272)
T TIGR03838 161 DFVLRRADGLFAYQL---AVVVDDAA-QGITHVV--RGADLLDSTPRQIYLQRLLGLPP---PRYLHLPL--VVNADGEK 229 (272)
T ss_pred CEEEEecCCCccccC---hhhhhccc-CCCCEEE--eCHhhhhccHHHHHHHHHhCCCC---CeEEechh--hhCCCCCe
Confidence 468999999999974 55566553 5888888 99999999999999999999954 36788887 66789999
Q ss_pred cccccCC
Q psy15414 865 FKTRSGD 871 (1458)
Q Consensus 865 MSKR~Gn 871 (1458)
+|||.|.
T Consensus 230 LSKR~~~ 236 (272)
T TIGR03838 230 LSKQNGA 236 (272)
T ss_pred eeccCCc
Confidence 9999985
No 94
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.03 E-value=6.2e-09 Score=128.92 Aligned_cols=228 Identities=20% Similarity=0.217 Sum_probs=148.2
Q ss_pred cEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHH
Q psy15414 214 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 293 (1458)
Q Consensus 214 ~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~ 293 (1458)
.+|-+=-++|.|.+++||||+|+.++.|.|+|.++..||+|.-..-+.|.|..+-.
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~------------------------ 77 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIK------------------------ 77 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHH------------------------
Confidence 45788889999999999999999999999999999999999988777776433211
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcce-eccc-chhhhhhhHHHHHHHH
Q psy15414 294 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTER-GESFYQKHMEQLVPYL 371 (1458)
Q Consensus 294 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~-f~~~-gEs~y~~~~~~vv~~L 371 (1458)
.|+ +.| ..|+.+++...+.|.+.+++|||. .+.. ..+.+.+.+.++++.|
T Consensus 78 -----------------~A~------~~g-----~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L 129 (463)
T PRK00260 78 -----------------RAN------EEG-----ESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERL 129 (463)
T ss_pred -----------------HHH------HcC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHH
Confidence 111 111 136788888899999999999994 4432 3355678889999999
Q ss_pred HHCCCeeecCCCeEEecCC--------------------------C-CCCceEEEec--CCccccchh----------hH
Q psy15414 372 EKKGLLELDDGRKIMWGED--------------------------R-GSIPMTIVKS--DGGFTYDTS----------DL 412 (1458)
Q Consensus 372 ~~kg~~~~~dGa~~~~~~~--------------------------~-~~~~~vl~kS--DG~~tY~t~----------Di 412 (1458)
.++|++|+.+|.+...... + ++.+.+|-|. .|-+.+.+. +-
T Consensus 130 ~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiec 209 (463)
T PRK00260 130 IDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIEC 209 (463)
T ss_pred HHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHH
Confidence 9999999999976532210 0 1124556554 343333321 12
Q ss_pred HHHHHHhhhcCCCEEEEecCCchHHHHHHHHHHHHHHcCCCCCCCccccccc----cccCCCcccccCHHHHHHHHHhhh
Q psy15414 413 AAIRQRIEEEKADWIVYVTDHRSYHQVLQAIAEEEKKQGISSSSSSQTKGTA----KKMNVPVRDRMSVRDYLSDVFTHA 488 (1458)
Q Consensus 413 A~~~~r~~~~~~d~iIyv~D~~~~~~~~~a~~~a~~~~g~~~~~~~~~~G~~----~kmskr~gt~~~l~~~L~ell~dA 488 (1458)
++..+++--..+|.-.-+.|+.-.|+-.. +++.....|-+....-++.|.+ .||||+.|+++++.+.+++...++
T Consensus 210 sam~~~~lg~~~Dih~gG~DlifpHh~ne-iaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~ 288 (463)
T PRK00260 210 SAMSTKYLGETFDIHGGGADLIFPHHENE-IAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEV 288 (463)
T ss_pred HHHHHHhcCCCcceecCccccCCCchHhH-HHHHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchH
Confidence 34444443234555555678432111111 1111112452222222333322 399999999999999999988899
Q ss_pred hhhccc
Q psy15414 489 VQVAFP 494 (1458)
Q Consensus 489 i~~a~~ 494 (1458)
+|..+.
T Consensus 289 lR~~ll 294 (463)
T PRK00260 289 LRFFLL 294 (463)
T ss_pred hHHHHH
Confidence 998653
No 95
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.01 E-value=5.9e-10 Score=125.18 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhccccCe---------eEeccccchhHHHHHHHHHHHHHCCCeeccCCCcccccccCCCCCceEEecCC
Q psy15414 1350 ICDVSRRDFQKIYDRLNV---------TLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDG 1420 (1458)
Q Consensus 1350 ~~~~i~~dL~~~gv~~d~---------~f~esges~~~~~v~~~~~~L~~~G~~Ye~~ga~~~~gddkdr~~~vl~rsdG 1420 (1458)
+.+.|.+||+|+|+.||. .|.|| .+. +.|.+++++|.++| ||
T Consensus 52 ~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS--~r~-~~y~~~~~~L~~~g--------------------------dg 102 (239)
T cd00808 52 AEEAILEALKWLGLDWDEGPDVGGPYGPYRQS--ERL-EIYRKYAEKLLEKG--------------------------DG 102 (239)
T ss_pred HHHHHHHHHHHcCCCCCcCCccCCCCCCEeee--CCH-HHHHHHHHHHHHcC--------------------------CC
Confidence 557999999999999998 78888 664 67899999999888 79
Q ss_pred ccccchhhhHHHHhhhhhcCCCEEEEeeccccccccc
Q psy15414 1421 GFTYDTSDLAAIRQRIEEEKADWIVYVTDHRSYHQVL 1457 (1458)
Q Consensus 1421 ~~tY~~~Diayh~~K~~~rgfd~~i~~~dhhg~~~~~ 1457 (1458)
.|||..+.++ +... .|.++||+|.||+++.++.
T Consensus 103 ~ptY~~a~~v---DD~~-~~ithViRG~D~~~~t~~q 135 (239)
T cd00808 103 FPTYHLANVV---DDHL-MGITHVIRGEEHLSSTPKQ 135 (239)
T ss_pred CcccccHHHH---hHHh-cCCCEEEEChhhhhChHHH
Confidence 9999888665 6664 7999999999999998764
No 96
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.1e-09 Score=131.07 Aligned_cols=137 Identities=20% Similarity=0.122 Sum_probs=96.0
Q ss_pred EEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccc
Q psy15414 787 TIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 866 (1458)
Q Consensus 787 vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMS 866 (1458)
|+.|+||.|||.. |-..+.. ..|.+++| .|.||...-++...+.+++||.. +.+.|++. +++.+|+|||
T Consensus 184 v~~r~dg~ptY~f---avvvDD~-~mgITHvi--RG~d~~~nt~~q~~l~~~lg~~~---P~~~H~~l--i~~~~g~kLS 252 (472)
T COG0008 184 VILRYDGYPTYNF---AVVVDDH-LMGITHVL--RGEDHLDNTPRQIWLYEALGWPP---PVYAHLPL--LLNEDGKKLS 252 (472)
T ss_pred eeecCCCCcccce---eeeechh-hcCCceEE--echhhccCCHHHHHHHHHcCCCC---CcEEEeee--eecCCCCeec
Confidence 8999999999974 3334443 25888998 99999999999999999999954 46778887 6668889999
Q ss_pred cccCCccchHHHHHHHH--HHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhh
Q psy15414 867 TRSGDTVKLSELLDEGL--RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 940 (1458)
Q Consensus 867 KR~GnvI~l~DLLde~~--~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n 940 (1458)
||+| .+.+.++.+..- .+..+.+.-.+.. ++++..+..... ..+..|++.....+...|+++++...|
T Consensus 253 Kr~~-~~~~~~~~~~G~~~~al~~~~allg~~--~~~~~~e~f~~~---~~~~~fd~~~~~~~~~~fd~~kL~~~n 322 (472)
T COG0008 253 KRKG-AVSIGEYRVEGWLPPALPNLLALLGRG--YPPEAIEIFSLE---EGIKWFDLTIVSKSPAAFDRKKLDWLN 322 (472)
T ss_pred CccC-ccccchhhhcCCCcHHHHHHHHHhcCC--CChhhHHHHHHH---HHHhhhhhhhhhcccccccHHHhHhhh
Confidence 9999 777776655421 2233333333321 223332222222 236778888888889999999977665
No 97
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.00 E-value=1.2e-08 Score=126.24 Aligned_cols=227 Identities=19% Similarity=0.203 Sum_probs=150.8
Q ss_pred EEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHH
Q psy15414 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 294 (1458)
Q Consensus 215 ~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~ 294 (1458)
+|-+=-+.|-|.+++|+||+|+.|..|.++|.|+..||+|.-.-=+-|.|..+-.-
T Consensus 21 ~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~------------------------ 76 (465)
T TIGR00435 21 KVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKR------------------------ 76 (465)
T ss_pred cceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHH------------------------
Confidence 56666678999999999999999999999999999999998877777765533110
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc--cchhhhhhhHHHHHHHHH
Q psy15414 295 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLE 372 (1458)
Q Consensus 295 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~--~gEs~y~~~~~~vv~~L~ 372 (1458)
|+ +.|- -++.+++...+.|.+.|++|||.++. ...|.|.+.+.++++.|.
T Consensus 77 -----------------A~------~~g~-----~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ 128 (465)
T TIGR00435 77 -----------------AR------ENGE-----SVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLI 128 (465)
T ss_pred -----------------HH------HcCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHH
Confidence 10 0110 13566788888999999999999875 356778889999999999
Q ss_pred HCCCeeecC-CCeEEecCC---------------------------CCCCceEEEec--CCccccch----------hhH
Q psy15414 373 KKGLLELDD-GRKIMWGED---------------------------RGSIPMTIVKS--DGGFTYDT----------SDL 412 (1458)
Q Consensus 373 ~kg~~~~~d-Ga~~~~~~~---------------------------~~~~~~vl~kS--DG~~tY~t----------~Di 412 (1458)
++|++|+++ |+++..... +++.+.+|-|+ .|.+.+.+ -.-
T Consensus 129 ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiec 208 (465)
T TIGR00435 129 EKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIEC 208 (465)
T ss_pred HCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHH
Confidence 999999998 987643211 01124566442 34333333 123
Q ss_pred HHHHHHhhhcCCCEEEEecCCchHHHHHHHHHHHHHHcCCCCCCCccccccc----cccCCCcccccCHHHHHHHHHhhh
Q psy15414 413 AAIRQRIEEEKADWIVYVTDHRSYHQVLQAIAEEEKKQGISSSSSSQTKGTA----KKMNVPVRDRMSVRDYLSDVFTHA 488 (1458)
Q Consensus 413 A~~~~r~~~~~~d~iIyv~D~~~~~~~~~a~~~a~~~~g~~~~~~~~~~G~~----~kmskr~gt~~~l~~~L~ell~dA 488 (1458)
++..+++-...+|--.-+.|+.-.|+--..+. .....|.++....++.|.+ .||||+.|+++++.+.+++...++
T Consensus 209 sam~~~~lg~~~Dih~gG~Dl~fpHhene~aq-s~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~da 287 (465)
T TIGR00435 209 SAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ-SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEI 287 (465)
T ss_pred HHHHHHhcCCCceeeccccccccchHHHHHHH-HHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHH
Confidence 44445543234665555688753322111111 1112454333222344432 399999999999999999988899
Q ss_pred hhhccc
Q psy15414 489 VQVAFP 494 (1458)
Q Consensus 489 i~~a~~ 494 (1458)
+|..+.
T Consensus 288 lR~~ll 293 (465)
T TIGR00435 288 LRYFLL 293 (465)
T ss_pred HHHHHH
Confidence 998753
No 98
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=98.96 E-value=2e-08 Score=118.68 Aligned_cols=237 Identities=15% Similarity=0.136 Sum_probs=144.6
Q ss_pred EEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHHH
Q psy15414 216 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 295 (1458)
Q Consensus 216 V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~y 295 (1458)
.+|--.-|+|+|++||||+|+.++.|+++|-++..||+|.-..=+.|.|..+-.-+.... ..+
T Consensus 2 ~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~-~~~---------------- 64 (312)
T cd00668 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG-GRK---------------- 64 (312)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc-Ccc----------------
Confidence 567778899999999999999999999999999999999888888777866544332110 000
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceeccc-----chhhhhhhHHHHHHH
Q psy15414 296 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQLVPY 370 (1458)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~~-----gEs~y~~~~~~vv~~ 370 (1458)
....+ ..+..+.++.+++...+.+.+.+++|||.+|+. -+..|.+.+.++++.
T Consensus 65 ------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~ 122 (312)
T cd00668 65 ------KKTIW----------------IEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSR 122 (312)
T ss_pred ------ccccc----------------HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHH
Confidence 00000 011223456777788888888999999999821 123466889999999
Q ss_pred HHHCCCeeecC------CCeEEecC-----------------C--C--------CCCceEEEec-------CCccccchh
Q psy15414 371 LEKKGLLELDD------GRKIMWGE-----------------D--R--------GSIPMTIVKS-------DGGFTYDTS 410 (1458)
Q Consensus 371 L~~kg~~~~~d------Ga~~~~~~-----------------~--~--------~~~~~vl~kS-------DG~~tY~t~ 410 (1458)
|.++|++++.. ..++.... + + +..+..|-|. -|-.+|.=-
T Consensus 123 L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~Wf 202 (312)
T cd00668 123 LYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDVWF 202 (312)
T ss_pred HHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccchh
Confidence 99999999844 33332110 0 0 0113333332 133334311
Q ss_pred hH-----HHHHHH-----hhh-cCCCEEEEecCCc-hHHHHHHHHHHHHHHcCCC-CCCCcccccc----c-cccCCCcc
Q psy15414 411 DL-----AAIRQR-----IEE-EKADWIVYVTDHR-SYHQVLQAIAEEEKKQGIS-SSSSSQTKGT----A-KKMNVPVR 472 (1458)
Q Consensus 411 Di-----A~~~~r-----~~~-~~~d~iIyv~D~~-~~~~~~~a~~~a~~~~g~~-~~~~~~~~G~----~-~kmskr~g 472 (1458)
|- ++..+. ++. +..|..+-+.|+. .++..+-+...+ ++.. +.......|. . .||||+.|
T Consensus 203 ds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~g~KmSKS~g 279 (312)
T cd00668 203 DSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVA---LFGEIPPKNLLVHGFVLDEGGQKMSKSKG 279 (312)
T ss_pred hccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHH---hcCCCCcceeEECcEEEcCCCccccccCC
Confidence 21 111111 111 1344444467876 333334444333 4432 2222222232 1 49999999
Q ss_pred cccCHHHHHHHHHhhhhhhccc
Q psy15414 473 DRMSVRDYLSDVFTHAVQVAFP 494 (1458)
Q Consensus 473 t~~~l~~~L~ell~dAi~~a~~ 494 (1458)
+.++..+.+++...+|+|..+.
T Consensus 280 n~v~~~d~~~~~~~da~R~~l~ 301 (312)
T cd00668 280 NVIDPSDVVEKYGADALRYYLT 301 (312)
T ss_pred CcCCHHHHHHHcCcHHHHHHHH
Confidence 9999999999988899998653
No 99
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=98.93 E-value=2.2e-08 Score=118.62 Aligned_cols=114 Identities=19% Similarity=0.342 Sum_probs=90.8
Q ss_pred EEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHHH
Q psy15414 216 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 295 (1458)
Q Consensus 216 V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~y 295 (1458)
++|=-.-|+|+|++|+||+|+.++.|.++|-++..||+|.-.--+.|.|.-+-.-+..
T Consensus 2 ~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~---------------------- 59 (319)
T cd00814 2 VLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE---------------------- 59 (319)
T ss_pred EEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH----------------------
Confidence 4566677999999999999999999999999999999998888777777655332210
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHHHHHHH
Q psy15414 296 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLE 372 (1458)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~vv~~L~ 372 (1458)
+.-+ ++.+|+.+.+.+++.+++|||.||. ..++.+.+.+.+++++|.
T Consensus 60 ------------------------~g~~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ 109 (319)
T cd00814 60 ------------------------EGVT------PQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLY 109 (319)
T ss_pred ------------------------cCCC------HHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHHHH
Confidence 0001 2467889999999999999999984 245567788999999999
Q ss_pred HCCCeeecC
Q psy15414 373 KKGLLELDD 381 (1458)
Q Consensus 373 ~kg~~~~~d 381 (1458)
++|++++.+
T Consensus 110 ekG~iY~~~ 118 (319)
T cd00814 110 ENGYIYEGE 118 (319)
T ss_pred HCCCEEeee
Confidence 999998654
No 100
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.91 E-value=1.8e-08 Score=119.15 Aligned_cols=118 Identities=21% Similarity=0.255 Sum_probs=88.3
Q ss_pred EEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHH
Q psy15414 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 294 (1458)
Q Consensus 215 ~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~ 294 (1458)
|++|-..=|+|+|++|+||+|+.+++|+++|.++..|++|.-..-+.|.|..+-..+...
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~-------------------- 60 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI-------------------- 60 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc--------------------
Confidence 367778889999999999999999999999999999999999998989887653322110
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceeccc-----chhhhhhhHHHHHH
Q psy15414 295 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQLVP 369 (1458)
Q Consensus 295 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~~-----gEs~y~~~~~~vv~ 369 (1458)
.. + .+.+++...+.+.+.+++|||++|.. ....+...+..++.
T Consensus 61 --------g~------------------~------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~ 108 (314)
T cd00812 61 --------GR------------------D------PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFL 108 (314)
T ss_pred --------CC------------------C------HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHH
Confidence 00 1 13555566677778888999888731 12234566777888
Q ss_pred HHHHCCCeeecCCCe
Q psy15414 370 YLEKKGLLELDDGRK 384 (1458)
Q Consensus 370 ~L~~kg~~~~~dGa~ 384 (1458)
.|.++|++++.++..
T Consensus 109 ~L~~~G~iy~~~~~v 123 (314)
T cd00812 109 KLYEKGLAYKKEAPV 123 (314)
T ss_pred HHHHCCCEEecCcee
Confidence 999999998877643
No 101
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.91 E-value=1.3e-08 Score=117.73 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=63.9
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
++||.|+||.|+|. +|...+... .+.+++| .|.|+....++...+.++|||.. +.+.|++. +++.+|+|
T Consensus 168 D~Vi~R~dg~ptY~---lA~vVDD~~-~gIThVv--RG~D~l~~t~~Q~~l~~aLg~~~---P~y~H~pl--l~~~~g~k 236 (299)
T PRK05710 168 DFVLRRADGLFAYQ---LAVVVDDAL-QGVTHVV--RGADLLDSTPRQIYLQQLLGLPT---PRYLHLPL--VLNADGQK 236 (299)
T ss_pred CEEEEecCCCcccc---chhHHhccc-CCCCEEE--eChhhhhcCHHHHHHHHHcCCCC---CeEEEeec--ccCCCCCc
Confidence 57899999999997 466666653 5888888 99999999999999999999953 47889887 67789999
Q ss_pred cccccCCc
Q psy15414 865 FKTRSGDT 872 (1458)
Q Consensus 865 MSKR~Gnv 872 (1458)
||||.|..
T Consensus 237 LSKr~~~~ 244 (299)
T PRK05710 237 LSKQNGAP 244 (299)
T ss_pred ccccCCcc
Confidence 99999853
No 102
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.90 E-value=8.9e-09 Score=121.15 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhccccC-eeEeccccchhHHHHHHHHHHHHHCCCeec----------------cCCCc----------
Q psy15414 1349 MICDVSRRDFQKIYDRLN-VTLTERGESFYQKHMEQLVPYLEKKGLLEL----------------DDGRK---------- 1401 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d-~~f~esges~~~~~v~~~~~~L~~~G~~Ye----------------~~ga~---------- 1401 (1458)
.+.+.|.+||+|+|+.|| ..+.|| .+. +.|.+++++|.++|.+|. +.|..
T Consensus 51 ~~~~~i~~~L~wlGl~~D~~~~~QS--~r~-~~Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~ 127 (314)
T PF00749_consen 51 EFYDAILEDLRWLGLEWDYGPYYQS--DRL-EIYQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCR 127 (314)
T ss_dssp HHHHHHHHHHHHHT---STCEEEGG--GGH-HHHHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHH
T ss_pred hHHHHHHhheeEEEEecCCeEEeHH--HHH-HHHHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhh
Confidence 466899999999999998 788888 664 689999999999999998 22300
Q ss_pred --c--------------------------ccc------------ccCCCCCceEEecCCccccchhhhHHHHhhhhhcCC
Q psy15414 1402 --I--------------------------MWG------------EDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKA 1441 (1458)
Q Consensus 1402 --~--------------------------~~g------------ddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgf 1441 (1458)
| .|- +-.|. |+.|+||.|||- .|--.+-.. .|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~---vi~r~dg~ptY~---fA~vVDD~~-~gI 200 (314)
T PF00749_consen 128 ELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDF---VIRRSDGYPTYH---FAVVVDDHL-MGI 200 (314)
T ss_dssp CHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTE---EEESTTSEB-HH---HHHHHHHHH-TT-
T ss_pred hhhHHHHHhhhccCCceeeeeecccccccccccCcceeeeeccccCCch---hccccccCcccc---cceeecccc-ccc
Confidence 1 000 11344 999999999994 456677775 799
Q ss_pred CEEEEeecccc
Q psy15414 1442 DWIVYVTDHRS 1452 (1458)
Q Consensus 1442 d~~i~~~dhhg 1452 (1458)
.+||.|.||.-
T Consensus 201 THViRG~D~l~ 211 (314)
T PF00749_consen 201 THVIRGEDLLS 211 (314)
T ss_dssp SEEEEEGGGTT
T ss_pred CeEEEcccccc
Confidence 99999999864
No 103
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.87 E-value=7.4e-09 Score=118.54 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhccccCe-eEeccccchhHHHHHHHHHHHHHCCCeec-------------cC-----C----------
Q psy15414 1349 MICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYLEKKGLLEL-------------DD-----G---------- 1399 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~-~f~esges~~~~~v~~~~~~L~~~G~~Ye-------------~~-----g---------- 1399 (1458)
.+.+.|.+||+|+|++||. .+.|| .++ +.|.+++++|.++|.+|. .. |
T Consensus 50 ~~~~~I~~dL~wLGl~wDe~~~~QS--~r~-~~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~ 126 (272)
T TIGR03838 50 GAADDILRTLEAYGLHWDGEVVYQS--QRH-ALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRP 126 (272)
T ss_pred HHHHHHHHHHHHcCCCCCCCeeeee--CCH-HHHHHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhccccccc
Confidence 3567999999999999995 57777 664 689999999999999993 00 1
Q ss_pred -C--cc---------cc-----cc--------cCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEeecccc
Q psy15414 1400 -R--KI---------MW-----GE--------DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRS 1452 (1458)
Q Consensus 1400 -a--~~---------~~-----gd--------dkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~~dhhg 1452 (1458)
. .| .| |. -.| -||.|+||.|||.-+ --.+-.. .|.++||.|.||.-
T Consensus 127 ~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D---~vi~R~Dg~ptY~fA---~vVDD~~-~gIThViRG~D~l~ 197 (272)
T TIGR03838 127 ARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGD---FVLRRADGLFAYQLA---VVVDDAA-QGITHVVRGADLLD 197 (272)
T ss_pred CCCceEEEecCCCCceEEEeeeeEEEecCcccCCC---EEEEecCCCccccCh---hhhhccc-CCCCEEEeCHhhhh
Confidence 0 01 00 00 022 399999999999544 5666675 79999999999864
No 104
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.81 E-value=7.8e-09 Score=124.90 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHCCCeec----------------cCCCc-----------
Q psy15414 1349 MICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL----------------DDGRK----------- 1401 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~G~~Ye----------------~~ga~----------- 1401 (1458)
.+.+.|.+||+|+|+.||..+.|| .+. +.|.+++++|.++|.+|. ..|..
T Consensus 49 e~~~~I~~~L~WlGl~wDe~y~QS--eR~-~~Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~ 125 (433)
T PRK12410 49 GKDKEILEILNLFGISWDKLVYQS--ENL-KFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLE 125 (433)
T ss_pred HHHHHHHHHHHHcCCCCCCCeehh--ccH-HHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCC
Confidence 466899999999999999999998 764 689999999999999994 01110
Q ss_pred ------------c---------ccccc------------CCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEee
Q psy15414 1402 ------------I---------MWGED------------RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 1448 (1458)
Q Consensus 1402 ------------~---------~~gdd------------kdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~~ 1448 (1458)
+ .|-|- .| .||.|+||.|||.-+ --.+-.. .|..+||.|.
T Consensus 126 ~~e~~~~g~~~~iR~k~p~~~~~f~D~v~G~i~~~~~~~~D---~Vi~R~Dg~PtY~fA---~vVDD~~-mgIThViRG~ 198 (433)
T PRK12410 126 DDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDS---FVILRADKTPTYNFA---CAVDDML-YDISLIIRGE 198 (433)
T ss_pred HhHHHhcCCCeEEEEEcCCCceeeeeccceeEEeccccCCC---eEEEcCCCCcccccc---chhchhh-cCCCEEEech
Confidence 0 01010 12 399999999999654 5556664 7999999999
Q ss_pred cccc
Q psy15414 1449 DHRS 1452 (1458)
Q Consensus 1449 dhhg 1452 (1458)
||.-
T Consensus 199 d~l~ 202 (433)
T PRK12410 199 DHVS 202 (433)
T ss_pred hhhh
Confidence 9864
No 105
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=7.2e-08 Score=115.75 Aligned_cols=263 Identities=17% Similarity=0.206 Sum_probs=142.0
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
..++|+ ++..|.|..|||++|-.+.+|+++|.|+..|++|..++--+|+.. +. +-+... |-. +
T Consensus 19 ~~~~v~-tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~--------lR-kvp~~l----p~~---~ 81 (521)
T COG1384 19 DEYVVA-TGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP--------LR-KVPRNL----PDP---E 81 (521)
T ss_pred CcEEEe-cCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc--------cc-cCCCCC----CCh---H
Confidence 456665 788999999999999999999999999999999999999999842 11 111110 000 1
Q ss_pred HHHHh-hhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccccc-cc-----chhHHH
Q psy15414 684 FYKES-KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES-FY-----QKHMEQ 756 (1458)
Q Consensus 684 iy~~~-~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~geS-~~-----~~~v~~ 756 (1458)
.|.++ ..-+.+-|+ =.|.- ..+.+.....|.+.+++|||.......| .| ...+..
T Consensus 82 ~~e~Ylg~Plt~IPd------------P~G~~------~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ 143 (521)
T COG1384 82 ELEQYLGMPLTEIPD------------PFGCC------DSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRI 143 (521)
T ss_pred HHHHHcCCccccCCC------------Ccccc------chHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHH
Confidence 11111 001111000 00110 0123445566777788888743211111 12 222222
Q ss_pred HHH-------HHHH-cCCeEeeCCcEEE---EcCCCCC---CCcEEEcCCCCccCCCcc-------hH----HHHHHhh-
Q psy15414 757 LVP-------YLEK-KGLLELDDGRKIM---WGEDRGS---IPMTIVKSDGGFTYDTSD-------LA----AIRQRIE- 810 (1458)
Q Consensus 757 vi~-------~L~~-kG~~ye~dGa~~~---~~d~~d~---~~~vL~ksDGt~tY~trD-------iA----~~~~k~~- 810 (1458)
+++ -|.+ .|- +-.+.++= .++.+.. .+.+=+..+|+.+|...| |- -.-||.+
T Consensus 144 ale~rdeI~~il~~~~~~--~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir~g~~KL~WRvdW 221 (521)
T COG1384 144 ALERRDEIMEILNEYRGR--ELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIRGGEGKLPWRVDW 221 (521)
T ss_pred HHhhHHHHHHHHHHhcCC--cccCCceeccccccccCCcceeEEEEecCCceEEEEecCCccceeeccccCcccccCcCc
Confidence 211 1110 010 11222221 1122210 011112223334443322 10 0012221
Q ss_pred -----hcCCCeEEEEeeCCcc---ccHHHHHHHHH-HcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHH
Q psy15414 811 -----EEKADWIVYVTDLGQG---VHFRLLEECAK-KAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDE 881 (1458)
Q Consensus 811 -----~~~~d~iIyVvg~dq~---~hf~~l~~il~-alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde 881 (1458)
..+. .+=--|.||. +-+..-..|++ .+|+..| .++.|.++++.+|+|||||+||+|+++|.++-
T Consensus 222 p~RW~~lgV--d~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP-----~~~~YE~i~lkg~~~mSsSkG~~i~~~dwlev 294 (521)
T COG1384 222 PMRWAALGV--DFEPFGKDHAAAGGSYDTGKRIAREIFGYEPP-----VPFVYEWILLKGGGKMSSSKGNVISLSDWLEV 294 (521)
T ss_pred cchhhccCc--ccccCCcccccccCchHHHHHHHHHhcCCCCC-----CCCceEEEEecCCcccccCCCcEEcHHHHHHh
Confidence 0111 1122355544 34555566776 6788655 37888889887778999999999999999996
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhh-HHhh
Q psy15414 882 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDK-MLDD 939 (1458)
Q Consensus 882 ~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~-~l~~ 939 (1458)
+. | ..+||++.+..|++..+||++. +++.
T Consensus 295 ~~-----------------p------------E~lry~~~r~kP~r~~~~d~~~~il~l 324 (521)
T COG1384 295 AP-----------------P------------EVLRYLIARTKPNRHIDFDFDLGILKL 324 (521)
T ss_pred cC-----------------H------------hHeeeeeeecCCCcceecCCCCChhHH
Confidence 52 2 2499999999999888898887 6653
No 106
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.80 E-value=6.8e-09 Score=121.58 Aligned_cols=259 Identities=17% Similarity=0.242 Sum_probs=112.9
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCC---CCCChh
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT---KSPPIA 679 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~---~~~~i~ 679 (1458)
++.+++ -|+..|.|+.|||++|-.+.+|.++|.|+..|++|..++..+|... +-++- ...|+... ...|+.
T Consensus 22 ~~~~v~-~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~-lRKvP----~~~p~~~~~~ylg~Plt 95 (360)
T PF01921_consen 22 KEPYVF-ASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDP-LRKVP----PNVPNPELEKYLGKPLT 95 (360)
T ss_dssp -SEEEE-EEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB----------TTS-CC-CCCCTTSBTT
T ss_pred CccEEE-ecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCc-ccCCC----CCCChHHHHHhcCCccc
Confidence 344555 4788999999999999999999999999999999999999999743 11111 11111100 001111
Q ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--ccc----cccchh
Q psy15414 680 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGE----SFYQKH 753 (1458)
Q Consensus 680 ~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~ge----S~~~~~ 753 (1458)
.+ -+|. |.- ..+.+.....|.+.++.|||.+.. ..+ ..|.+.
T Consensus 96 ~V------------PdP~--------------G~~------~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~ 143 (360)
T PF01921_consen 96 RV------------PDPF--------------GCH------ESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQ 143 (360)
T ss_dssp TS------------B-TT--------------SSS------SCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHH
T ss_pred cC------------CCCC--------------CCC------ccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHH
Confidence 00 0110 000 012344566788888999985421 111 112222
Q ss_pred ----------HHHHHHHHHHcCCeEeeCCcE--EEEcCCCCCCCcE-EEc---CCCCccCCC--------cchHH----H
Q psy15414 754 ----------MEQLVPYLEKKGLLELDDGRK--IMWGEDRGSIPMT-IVK---SDGGFTYDT--------SDLAA----I 805 (1458)
Q Consensus 754 ----------v~~vi~~L~~kG~~ye~dGa~--~~~~d~~d~~~~v-L~k---sDGt~tY~t--------rDiA~----~ 805 (1458)
+.+++..-.... ..+... ...++.+.....+ +.. ..++.+|.. .|+.- .
T Consensus 144 i~~aL~~~~~I~~Il~~~~~~~---~~~~y~Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL 220 (360)
T PF01921_consen 144 IRTALENRDEIREILNEYRGRE---RPETYSPFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKL 220 (360)
T ss_dssp HCHHHHTHHHHHHHHHHHHHHT-----TT--SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE
T ss_pred HHHHHHhHHHHHHHHHHhcCcC---CCCCeeeeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccc
Confidence 222332221111 111111 0112222100000 010 122233322 11110 1
Q ss_pred HHHhh------hcCCCeEEEEeeCCccc---cHHHHHHHH-HHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccch
Q psy15414 806 RQRIE------EEKADWIVYVTDLGQGV---HFRLLEECA-KKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKL 875 (1458)
Q Consensus 806 ~~k~~------~~~~d~iIyVvg~dq~~---hf~~l~~il-~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l 875 (1458)
-||.+ .++.| +=-.|.||.. -+..-..++ +.+|+..| .++.|.+++..+|+|||||+||++++
T Consensus 221 ~WkvDW~mRW~~lgVd--fEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP-----~~~~YE~~~~~g~~kmSsSkG~~~t~ 293 (360)
T PF01921_consen 221 QWKVDWPMRWAALGVD--FEPFGKDHASPGGSYDTSKRIAREILGYEPP-----VPFPYEFFLDKGGGKMSSSKGNGITP 293 (360)
T ss_dssp -HHHHHHHHHHHTT-S--EEEEEHHHHCTTSHHHHHHHHHHHCC----------EEEEE--EEES--------------H
T ss_pred cCCCcChhhhhhcCce--eccCCCccCCCCCChhhHHHHHHHHhCCCCC-----CCCCeeEEEeCCCcccccCCCCccCH
Confidence 12221 12333 4446888887 788888888 67898554 58999999987777999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchh-hHHh
Q psy15414 876 SELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFD-KMLD 938 (1458)
Q Consensus 876 ~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d-~~l~ 938 (1458)
+|.|+-+ +|| .|||++++..+++..+|+++ .+.+
T Consensus 294 ~e~L~~~-----------------~PE------------~lr~l~~~~~P~~~~~~~~~~~i~~ 328 (360)
T PF01921_consen 294 EEWLEYA-----------------PPE------------SLRYLMARTKPNKAKDFSFDLVIPR 328 (360)
T ss_dssp HHHHTTS------------------HH------------HHHHHHHCS-TTS-EEE--STTHHH
T ss_pred HHHHHhc-----------------CHH------------HHHHHHcccCCCcceEeccCcchHH
Confidence 9998854 232 48999999999988888888 4443
No 107
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.79 E-value=1.6e-08 Score=117.00 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhccccCe-eEeccccchhHHHHHHHHHHHHHCCCeec-----------c----------CCC---c--
Q psy15414 1349 MICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYLEKKGLLEL-----------D----------DGR---K-- 1401 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~-~f~esges~~~~~v~~~~~~L~~~G~~Ye-----------~----------~ga---~-- 1401 (1458)
.+.+.|.+||+|+|+.||. .+.|| .+. +.|.+++++|.++|++|. + +|. +
T Consensus 55 ~~~~~I~~dL~wlGl~wDe~~~~QS--~r~-~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~ 131 (299)
T PRK05710 55 GAADAILADLEWLGLHWDGPVLYQS--QRH-DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLH 131 (299)
T ss_pred HHHHHHHHHHHHCCCCCCCCceEee--ccH-HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCc
Confidence 3567999999999999994 77787 653 689999999999999995 1 111 0
Q ss_pred -------c----c-----ccc-------------cCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEeecccc
Q psy15414 1402 -------I----M-----WGE-------------DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRS 1452 (1458)
Q Consensus 1402 -------~----~-----~gd-------------dkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~~dhhg 1452 (1458)
| . |-| -.| -||.|+||.|||..+ --.+-.. .|.++||.|.||.-
T Consensus 132 ~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D---~Vi~R~dg~ptY~lA---~vVDD~~-~gIThVvRG~D~l~ 204 (299)
T PRK05710 132 GPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALAVGD---FVLRRADGLFAYQLA---VVVDDAL-QGVTHVVRGADLLD 204 (299)
T ss_pred cccCCceEEEEcCCCceEEEEecceeEeeCCCCCCCC---EEEEecCCCccccch---hHHhccc-CCCCEEEeChhhhh
Confidence 0 0 101 122 399999999999654 6667675 79999999999853
No 108
>PLN02627 glutamyl-tRNA synthetase
Probab=98.77 E-value=2.4e-08 Score=122.71 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=101.6
Q ss_pred CCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHH
Q psy15414 1228 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 1307 (1458)
Q Consensus 1228 ~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~ 1307 (1458)
+.+.+|.+=|. +.|||+||+||+|.|.+--..|| ..|-+.. ||.
T Consensus 41 ~~~~~vr~RFA-PSPTG~LHiG~aRtAL~n~l~Ar---~~gG~fi------------------LRI-------------- 84 (535)
T PLN02627 41 SKGGPVRVRFA-PSPTGNLHVGGARTALFNYLFAR---SKGGKFV------------------LRI-------------- 84 (535)
T ss_pred CCCCceEEEeC-CCCCCCccHHHHHHHHHHHHHHH---HhCCEEE------------------EEe--------------
Confidence 33456888786 79999999999999998877776 2221111 221
Q ss_pred HHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCe---------eEeccccchhH
Q psy15414 1308 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV---------TLTERGESFYQ 1378 (1458)
Q Consensus 1308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~---------~f~esges~~~ 1378 (1458)
+|.|. .+....+.+.|.+||+|+|+.||. .|.|| .+.
T Consensus 85 -----------------------------EDTD~--~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QS--eR~- 130 (535)
T PLN02627 85 -----------------------------EDTDL--ARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQS--ERN- 130 (535)
T ss_pred -----------------------------CcCCC--CCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCCeeee--ccH-
Confidence 11111 111223567999999999999995 48888 664
Q ss_pred HHHHHHHHHHHHCCCeec----------------c-------CC-----------------Cc--c----------cccc
Q psy15414 1379 KHMEQLVPYLEKKGLLEL----------------D-------DG-----------------RK--I----------MWGE 1406 (1458)
Q Consensus 1379 ~~v~~~~~~L~~~G~~Ye----------------~-------~g-----------------a~--~----------~~gd 1406 (1458)
+.|.+++++|.++|++|. . || .. | .|.|
T Consensus 131 ~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D 210 (535)
T PLN02627 131 AIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDD 210 (535)
T ss_pred HHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEe
Confidence 689999999999999995 0 01 00 0 0111
Q ss_pred ------------cCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEeecccc
Q psy15414 1407 ------------DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRS 1452 (1458)
Q Consensus 1407 ------------dkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~~dhhg 1452 (1458)
-.|- ||.|+||.|||.-+ --.+-.. .|-++||.|.||.-
T Consensus 211 ~i~G~i~~~~~~~~D~---Vi~R~DG~PtY~fA---~vVDD~~-mgITHViRG~D~l~ 261 (535)
T PLN02627 211 LIRGEVSWNTDTLGDF---VLLRSNGQPVYNFC---VAVDDAT-MGITHVIRAEEHLP 261 (535)
T ss_pred eeeeeeeeccccCCCe---EEEecCCCcccccc---ceecccc-cCCcEEEechhhhc
Confidence 1243 99999999999654 5556664 79999999999964
No 109
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.1e-07 Score=123.01 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=137.9
Q ss_pred EEEEeeCCccc-cHHHHHHHH-HHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcC
Q psy15414 817 IVYVTDLGQGV-HFRLLEECA-KKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 894 (1458)
Q Consensus 817 iIyVvg~dq~~-hf~~l~~il-~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~ 894 (1458)
=+|+=|.||+. -|.-+-.+. -..|- . ++-..+.+|+++..+|+|||||+||+|+|.|+++++|
T Consensus 557 D~~lEGsDQ~RGWF~Ssl~~s~a~~~~-a---PYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yG----------- 621 (933)
T COG0060 557 DFYLEGSDQTRGWFYSSLLTSTALFGR-A---PYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYG----------- 621 (933)
T ss_pred cEEEEeccccchhHHHHHHHHHHHcCC-c---hHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhC-----------
Confidence 37778888763 333332211 12342 2 2334556677999999999999999999999999885
Q ss_pred CCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchh-hhhcc
Q psy15414 895 RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL-RVAAQ 973 (1458)
Q Consensus 895 ~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i-~~~~~ 973 (1458)
.+.+|+++++..+..|..||++.+... .+ +|.|+.+.+|=.-...... |....
T Consensus 622 ------------------ADiLRLwv~ssd~~~dl~~s~~il~~~-~~-------~~r~irNt~rF~l~nl~~fdp~~~~ 675 (933)
T COG0060 622 ------------------ADILRLWVASSDYWEDLRFSDEILKQV-RE-------VYRKIRNTYRFLLGNLDDFDPKKDA 675 (933)
T ss_pred ------------------chheeeeeeecCchhccccCHHHHHHH-HH-------HHHHHHHHHHHHHHhccCCCccccc
Confidence 245999999999999999999884433 11 1223322222110000000 00000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHhhhhhc-c-ccccccccccccchhHHHHHH
Q psy15414 974 STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYDNC-Y-CIEKDAEGKIKTVHTGRLLLA 1050 (1458)
Q Consensus 974 ~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA-~~fN~fy~~~-~-vL~k~~~~~~~~~~~aRL~L~ 1050 (1458)
.....+ .+.++=++..+..+...+.+++++|+++.+++.|.+.+ ...++||=+- + .+-.+. +-...|.+..
T Consensus 676 ~~~~~~-~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~-----~~s~~rraa~ 749 (933)
T COG0060 676 VLPEEL-RELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEA-----ADSPDRRAAQ 749 (933)
T ss_pred cchhhc-chhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcC-----CCCHHHHHHH
Confidence 000112 24466678889999999999999999999999999999 8888888543 2 121110 0145777777
Q ss_pred HHHHHHHHHHhhhcccccchhhHHh
Q psy15414 1051 EATAKVMKKCFDILNIRTAIAEEEK 1075 (1458)
Q Consensus 1051 ~av~~VL~~gL~LLGI~~~e~m~~~ 1075 (1458)
.+.-.+|...+.+|..-.|-.+++.
T Consensus 750 ~~Ly~il~~l~~~lAPilPftaEei 774 (933)
T COG0060 750 TTLYHILKALVRLLAPILPFTAEEI 774 (933)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHH
Confidence 7788888888888888777776664
No 110
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.76 E-value=2.3e-08 Score=122.75 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=54.0
Q ss_pred CcEEEcCCCCc---------cCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeE
Q psy15414 785 PMTIVKSDGGF---------TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFG 855 (1458)
Q Consensus 785 ~~vL~ksDGt~---------tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg 855 (1458)
+.|+.|+||++ .|.|=|+|...+.. ..+.+++| .|.+|..+-++...++++||+..| .+ |. |+
T Consensus 167 D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~-l~gITHvi--Rg~E~~~~t~~q~~l~~aLg~~~P---~~-~~-f~ 238 (523)
T PLN03233 167 DPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDS-IEGVTHAL--RTTEYDDRDAQFFWIQKALGLRRP---RI-HA-FA 238 (523)
T ss_pred CCEEEEEcCCcccccCCcccceeccCCceeeecc-ccCCCeEE--echhhhcCCHHHHHHHHHhCCCCC---ee-ee-eE
Confidence 46899999752 12222345545544 25788888 999999999999999999998543 44 44 66
Q ss_pred EEecCCCccccccc
Q psy15414 856 VVLGEDRKKFKTRS 869 (1458)
Q Consensus 856 ~V~~~~G~KMSKR~ 869 (1458)
.+ +..|.|||||+
T Consensus 239 rl-n~~~~kLSKR~ 251 (523)
T PLN03233 239 RM-NFMNTVLSKRK 251 (523)
T ss_pred EE-CCCCCcccccC
Confidence 54 45788999997
No 111
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.75 E-value=3.3e-08 Score=122.50 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=74.6
Q ss_pred CCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCc
Q psy15414 793 GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDT 872 (1458)
Q Consensus 793 Gt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gnv 872 (1458)
|-|||. +|...+.. ..+.+++| .|.++..+-++...++++|||.. +.+.|.+. ++.+|.|||||++
T Consensus 229 gyPtYd---fA~vVDD~-l~gITHvl--Rg~E~l~~tp~q~~L~~aLg~~~---P~~~h~~r---Ln~~g~kLSKRkl-- 294 (601)
T PTZ00402 229 AYPTYD---FCCPIIDS-VEGVTHAL--RTNEYHDRNDQYYWFCDALGIRK---PIVEDFSR---LNMEYSVMSKRKL-- 294 (601)
T ss_pred eeeccC---cceeeEcc-ccCCceEe--echhhhhCcHHHHHHHHHhCCCC---ceEEEEee---EcCCCCcccccCC--
Confidence 556664 44444443 25788888 99999999999999999999853 46778873 5678999999997
Q ss_pred cchHHHHHHHHH--------HHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhh
Q psy15414 873 VKLSELLDEGLR--------RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 940 (1458)
Q Consensus 873 I~l~DLLde~~~--------~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n 940 (1458)
..++++... ....-+..+| ++++++. .|+.......++..|||+.+..+|
T Consensus 295 ---~~lv~~g~v~GWdDprlpTi~glrRrG----~~peai~-----------~f~~~~Gvsk~~~~~d~~~L~~~n 352 (601)
T PTZ00402 295 ---TQLVDTHVVDGWDDPRFPTVRALVRRG----LKMEALR-----------QFVQEQGMSKTVNFMEWSKLWYFN 352 (601)
T ss_pred ---hhhhhcCcccccCCCccHhHHHHHHcC----CCHHHHH-----------HHHHHhCCCCCCcccCHHHHHHHH
Confidence 344443210 0112222333 4554332 333444445678899999987664
No 112
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.3e-08 Score=124.17 Aligned_cols=96 Identities=17% Similarity=0.067 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhccccCe-eEeccccchhHHHHHHHHHHHHHCCCeec----------------cCC---C--------
Q psy15414 1349 MICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYLEKKGLLEL----------------DDG---R-------- 1400 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~-~f~esges~~~~~v~~~~~~L~~~G~~Ye----------------~~g---a-------- 1400 (1458)
.+.+.|.+||+|+|++||. .+.|| .++ +.|.+++++|.++|++|. ..| .
T Consensus 59 e~~~~I~~~L~WLGl~wde~~~~QS--~r~-~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~ 135 (472)
T COG0008 59 EAEDAILEDLEWLGLDWDEGPYYQS--ERF-DIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERN 135 (472)
T ss_pred HHHHHHHHHHHhcCCCCCCceeehh--hhH-HHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhc
Confidence 4567999999999999999 68888 665 689999999999999987 111 0
Q ss_pred cc-----cc-c-----------c--cC-------------CC--CCc-eEEecCCccccchhhhHHHHhhhhhcCCCEEE
Q psy15414 1401 KI-----MW-G-----------E--DR-------------GS--IPM-TIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 1445 (1458)
Q Consensus 1401 ~~-----~~-g-----------d--dk-------------dr--~~~-vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i 1445 (1458)
++ .. | | .. .- .|. |+.|+||.|||-- |--.+-.. .|-.+||
T Consensus 136 L~~~~~~~~~~~~~~~viR~k~~~~~~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~f---avvvDD~~-mgITHvi 211 (472)
T COG0008 136 LTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNF---AVVVDDHL-MGITHVL 211 (472)
T ss_pred cchHHHHhhcccCCCeEEEEeCCCCCCCCccccceeeeEecCccCCcceeecCCCCcccce---eeeechhh-cCCceEE
Confidence 00 00 0 0 00 01 246 9999999999943 35555564 7999999
Q ss_pred Eeeccc
Q psy15414 1446 YVTDHR 1451 (1458)
Q Consensus 1446 ~~~dhh 1451 (1458)
.|.||-
T Consensus 212 RG~d~~ 217 (472)
T COG0008 212 RGEDHL 217 (472)
T ss_pred echhhc
Confidence 999985
No 113
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.72 E-value=3.1e-08 Score=110.59 Aligned_cols=116 Identities=15% Similarity=-0.016 Sum_probs=78.7
Q ss_pred HHHHHHHHHhCCEEec-ccccccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCCCCCCcEEEcCCCCccCCCcchHHHHH
Q psy15414 729 RDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQ 807 (1458)
Q Consensus 729 ~~f~~~y~~L~i~f~~-~geS~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~d~~~~vL~ksDGt~tY~trDiA~~~~ 807 (1458)
+.+.++++.||+..++ ...|.+.+.-.+++++|.++|.+|..- ..+...++ .|+|. +|...+
T Consensus 54 ~~I~~dL~wlGl~wD~~~~QS~r~~~Y~~~~~~L~~~g~aY~~~---------~~~~~~~i-----~ptY~---lA~vVD 116 (238)
T cd00807 54 DSIKEDVKWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYVHH---------RTGDKWCI-----YPTYD---FAHPIV 116 (238)
T ss_pred HHHHHHHHHcCCCCCCceecccCHHHHHHHHHHHHHcCCeecCC---------CCCCCEEE-----Eeccc---cceEee
Confidence 4456667788886652 224566677889999999999999720 00011222 36665 455455
Q ss_pred HhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccC
Q psy15414 808 RIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSG 870 (1458)
Q Consensus 808 k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~G 870 (1458)
... .+.+++| .|.|+...-++...+.++||+..| .+.|.++ + +.+|+|+|||.|
T Consensus 117 D~~-~gIThVv--RG~D~l~~t~~Q~~l~~aLg~~~P---~~~~~~h--l-n~~g~kLSKR~~ 170 (238)
T cd00807 117 DSI-EGITHSL--CTLEFEDRRPSYYWLCDALRLYRP---HQWEFSR--L-NLTYTVMSKRKL 170 (238)
T ss_pred ccc-cCCCeEE--echhhhcCCHHHHHHHHHcCCCCC---ceeEEEE--E-CCCCCCccCcCc
Confidence 542 5788888 999999999999999999999554 2223332 2 568999999996
No 114
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.71 E-value=1.8e-08 Score=112.97 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=88.0
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHHHHHhCCC
Q psy15414 1239 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 1318 (1458)
Q Consensus 1239 sanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~ 1318 (1458)
.+.|||+||+||+|.|++-+.+|| +|+++----+-|-
T Consensus 7 aPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDt-------------------------------------- 43 (240)
T cd09287 7 APNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDT-------------------------------------- 43 (240)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcC--------------------------------------
Confidence 479999999999999999999999 3443321111111
Q ss_pred CChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHCCCeeccC
Q psy15414 1319 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 1398 (1458)
Q Consensus 1319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~G~~Ye~~ 1398 (1458)
|+.+........+.|.+||+|+|+.||..+.|| .+. +.+.+++++|.++|++|..
T Consensus 44 ---------------------D~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS--~r~-~~y~~~~~~Li~~G~aY~~- 98 (240)
T cd09287 44 ---------------------DPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIAS--DRI-ELYYEYARKLIEMGGAYVH- 98 (240)
T ss_pred ---------------------CCCcccchHHHHHHHHHHHHHcCCCCCCccchh--ccH-HHHHHHHHHHHHcCCcccC-
Confidence 111100112244679999999999999988888 653 6789999999999999972
Q ss_pred CCcccccccCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEeecccc
Q psy15414 1399 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRS 1452 (1458)
Q Consensus 1399 ga~~~~gddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~~dhhg 1452 (1458)
-..|+ | +++ .||| |.|--.+-.. .|-++||.|.||.-
T Consensus 99 ---~~~~~--~----~~i----~ptY---~la~vVDD~~-~gIThViRg~d~~~ 135 (240)
T cd09287 99 ---PRTGS--K----YRV----WPTL---NFAVAVDDHL-LGVTHVLRGKDHID 135 (240)
T ss_pred ---cccCC--c----EEE----EEcc---ccceeeeccc-cCCCeEEechhhhh
Confidence 11121 2 333 3776 3445556664 69999999988864
No 115
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.66 E-value=6.8e-08 Score=118.99 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=52.1
Q ss_pred CcEEEcC-------CC-----CccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCC-CCCcceEEE
Q psy15414 785 PMTIVKS-------DG-----GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKTRMDF 851 (1458)
Q Consensus 785 ~~vL~ks-------DG-----t~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~-~~~~~~~~H 851 (1458)
+.|+.|+ +| .|||. +|...+.. ..+.+++| .|.+|..+-++...++++||+. .|. .
T Consensus 190 D~Vi~R~~~~~H~r~G~k~~iyPtYd---fA~~vdD~-l~gITHvl--Rg~E~~~~t~~~~~i~~alg~~~~P~-----~ 258 (554)
T PRK05347 190 DPVLYRIRHAHHHRTGDKWCIYPMYD---FAHCISDA-IEGITHSL--CTLEFEDHRPLYDWVLDNLPIPPHPR-----Q 258 (554)
T ss_pred CCEEEEecCCCCCccCCceeeecCcC---ccceeecc-ccCCceEE--eccccccChHHHHHHHHHcCCCCCCc-----e
Confidence 3577777 46 56664 45544443 25788888 8999999999999999999952 232 2
Q ss_pred EEeEEEecCCCcccccccCC
Q psy15414 852 VGFGVVLGEDRKKFKTRSGD 871 (1458)
Q Consensus 852 ~~fg~V~~~~G~KMSKR~Gn 871 (1458)
..|+.+ +.+|.|||||++.
T Consensus 259 ~~F~rl-n~~~~~LSKRkl~ 277 (554)
T PRK05347 259 YEFSRL-NLTYTVMSKRKLK 277 (554)
T ss_pred EEEEEE-CCCCCccccccch
Confidence 234433 4488899999964
No 116
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.66 E-value=2.6e-08 Score=111.26 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhccccCe-eEeccccchhHHHHHHHHHHHHHCCCeeccCCCcccccccCCCCCceEEecCCccccchh
Q psy15414 1349 MICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTS 1427 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~-~f~esges~~~~~v~~~~~~L~~~G~~Ye~~ga~~~~gddkdr~~~vl~rsdG~~tY~~~ 1427 (1458)
.+.+.|.+||+|+|+.||. .+.|| .+. +.|.+++++|.++| |.|||..
T Consensus 51 ~~~~~I~~dL~wlGl~wd~~~~~QS--~r~-~~y~~~~~~L~~~g---------------------------g~p~Y~l- 99 (230)
T cd00418 51 EYVESILEDLKWLGLDWDEGPYRQS--DRF-DLYRAYAEELIKKG---------------------------GYPLYNF- 99 (230)
T ss_pred HHHHHHHHHHHHcCCCCCCCeeehh--cCH-HHHHHHHHHHHHcC---------------------------CCccccc-
Confidence 4568999999999999998 88888 664 68999999999999 8888844
Q ss_pred hhHHHHhhhhhcCCCEEEEeecccc
Q psy15414 1428 DLAAIRQRIEEEKADWIVYVTDHRS 1452 (1458)
Q Consensus 1428 Diayh~~K~~~rgfd~~i~~~dhhg 1452 (1458)
|--.+-.. .|-++||.|.||.-
T Consensus 100 --a~vvDD~~-~gIThViRG~D~l~ 121 (230)
T cd00418 100 --VHPVDDAL-MGITHVLRGEDHLD 121 (230)
T ss_pred --cccccccc-cCCCEEEECHhhhh
Confidence 45566664 68999999988754
No 117
>PLN02907 glutamate-tRNA ligase
Probab=98.65 E-value=4e-08 Score=126.28 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=74.0
Q ss_pred CcEEEcCCC------------CccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEE
Q psy15414 785 PMTIVKSDG------------GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFV 852 (1458)
Q Consensus 785 ~~vL~ksDG------------t~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~ 852 (1458)
+.|+.|.+| .|||. +|...+.. ..+.+++| .|.+|..+-++...++++||+..| .+.
T Consensus 369 D~v~~R~~~~~h~~~gd~~~~~PtY~---fa~~vdD~-~~gIThvl--Rg~e~~~~t~~q~~l~~~lg~~~p---~~~-- 437 (722)
T PLN02907 369 DPVYYRCNPTPHHRIGSKYKVYPTYD---FACPFVDA-LEGVTHAL--RSSEYHDRNAQYYRILEDMGLRKV---HIW-- 437 (722)
T ss_pred cCEEEEecCCcccccCCccceeeccC---CceEEEcc-cCCCceEe--ecHhhhhChHHHHHHHHHcCCCCC---eeE--
Confidence 457888887 34543 44444433 25778887 999999999999999999998543 222
Q ss_pred EeEEEecCCCcccccccCCccchHHHHHHHHH------H--HHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecC-
Q psy15414 853 GFGVVLGEDRKKFKTRSGDTVKLSELLDEGLR------R--SLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH- 923 (1458)
Q Consensus 853 ~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~------~--a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~- 923 (1458)
.|+. ++.+|.|||||+ +..++++..- + ....+.++| ++++. |+=|++..
T Consensus 438 ~f~~-l~~~~~~lSKR~-----l~~~v~~g~v~Gwddpr~pt~~~~rrrG----~~~ea------------i~~f~~~~g 495 (722)
T PLN02907 438 EFSR-LNFVYTLLSKRK-----LQWFVDNGKVEGWDDPRFPTVQGIVRRG----LKIEA------------LKQFILSQG 495 (722)
T ss_pred EEEE-EcCCCccccccc-----hHhHhhcCcccCCCCCCcccHHHHHHcC----CCHHH------------HHHHHHHhC
Confidence 3333 344788999998 4555554310 0 011122222 34443 33333333
Q ss_pred CCCCccccchhhHHhhh
Q psy15414 924 NRNLDYVFSFDKMLDDR 940 (1458)
Q Consensus 924 ~~~~d~~Fd~d~~l~~n 940 (1458)
...++..|||+++-.+|
T Consensus 496 ~s~~~~~~~~~~l~~~n 512 (722)
T PLN02907 496 ASKNLNLMEWDKLWTIN 512 (722)
T ss_pred CCcCCccccHHHHHHHH
Confidence 34678899999877654
No 118
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.64 E-value=3.6e-07 Score=108.48 Aligned_cols=240 Identities=21% Similarity=0.282 Sum_probs=139.1
Q ss_pred cEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHH
Q psy15414 214 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 293 (1458)
Q Consensus 214 ~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~ 293 (1458)
.+++|+=.=+ |+|+.||||+|..+.+|.|+|.++..|++|.-+....|++. | .+.|..+. +
T Consensus 19 ~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~--------l-rKvp~~l~---------~ 79 (353)
T cd00674 19 EKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR--------L-RKVPPNVP---------E 79 (353)
T ss_pred CeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc--------c-cccccchh---------h
Confidence 3577764444 99999999999999999999999999999999999999975 1 12232210 0
Q ss_pred HHHH-hhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceeccc-chhhh-hh-hHHHHHH
Q psy15414 294 FYKE-SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-GESFY-QK-HMEQLVP 369 (1458)
Q Consensus 294 ~y~~-~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~~-gEs~y-~~-~~~~vv~ 369 (1458)
-|.+ .+.....-| ||+ ..-..+++-..+.|.+++++|||+++.. .-..| ++ ..+.+..
T Consensus 80 ~~~~~~G~pi~~ip----------------~p~--g~~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~ 141 (353)
T cd00674 80 SYEQYIGMPLSSVP----------------DPF--GCCESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILI 141 (353)
T ss_pred HHHHhcCccchhch----------------hhc--CCCHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHH
Confidence 0111 011110000 000 0012455666778889999999998742 12233 32 3455566
Q ss_pred HHHHCCCeee----cCCC-----eEEec---CCCCCCceEEEecC---Cccccch-------hhH----HHHHHHhh---
Q psy15414 370 YLEKKGLLEL----DDGR-----KIMWG---EDRGSIPMTIVKSD---GGFTYDT-------SDL----AAIRQRIE--- 420 (1458)
Q Consensus 370 ~L~~kg~~~~----~dGa-----~~~~~---~~~~~~~~vl~kSD---G~~tY~t-------~Di----A~~~~r~~--- 420 (1458)
.|++.+.+.+ --|. ++-|. +.-+.....+..-| |+-+|.. .|+ +=+-||++
T Consensus 142 ~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~ 221 (353)
T cd00674 142 ALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPM 221 (353)
T ss_pred HHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchh
Confidence 6666665421 1122 22111 11111112222222 4455642 344 22334432
Q ss_pred ---hcCCCEEEEecCCchH---HHHHHHHHHHHHHcCCCCCCCc------cccccccccCCCcccccCHHHHHHHHHhhh
Q psy15414 421 ---EEKADWIVYVTDHRSY---HQVLQAIAEEEKKQGISSSSSS------QTKGTAKKMNVPVRDRMSVRDYLSDVFTHA 488 (1458)
Q Consensus 421 ---~~~~d~iIyv~D~~~~---~~~~~a~~~a~~~~g~~~~~~~------~~~G~~~kmskr~gt~~~l~~~L~ell~dA 488 (1458)
-++.|.=+++.||+.+ ..+.+.+++. .+|+.+.... ...| .|||||.|+.+++.+.|+....++
T Consensus 222 rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~--ilg~~~P~~~~ye~V~l~gg--~KMSKSkGnvI~~~dll~~~~~da 297 (353)
T cd00674 222 RWAILGVDFEPFGKDHASAGGSYDTGKEIARE--IFGGEPPVPVMYEFIGLKGG--GKMSSSKGNVITPSDWLEVAPPEV 297 (353)
T ss_pred hhhhcCCCEEeeCccccccccHHHHHHHHHHH--HhCCCCCeEEEeeeEEeCCC--CccCCCCCCcCCHHHHHHHhChHH
Confidence 1234444567888755 7777777651 3787543221 1222 599999999999999999988899
Q ss_pred hhhccc
Q psy15414 489 VQVAFP 494 (1458)
Q Consensus 489 i~~a~~ 494 (1458)
++..+.
T Consensus 298 lR~~~l 303 (353)
T cd00674 298 LRYLYA 303 (353)
T ss_pred HHHHHH
Confidence 998753
No 119
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=98.62 E-value=1.8e-07 Score=118.18 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=95.3
Q ss_pred eEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHH
Q psy15414 1232 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 1311 (1458)
Q Consensus 1232 ~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~ 1311 (1458)
++.|=-.=++|+|++|+||+|..++.|+++|.|+..||+|.--+-+.|.|..|..-|...
T Consensus 2 ~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~-------------------- 61 (511)
T PRK11893 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA-------------------- 61 (511)
T ss_pred CEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHc--------------------
Confidence 345544557999999999999999999999999999999999999999997665443221
Q ss_pred HHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHC
Q psy15414 1312 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 1391 (1458)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~ 1391 (1458)
|. +..+ ..+.+.+.+++||+.+|+.||.|++.+. ..+...+.+++.+|.++
T Consensus 62 ----g~--~~~~----------------------~~~~~~~~~~~~l~~l~I~~D~~~~t~~-~~~~~~v~~~~~~L~~~ 112 (511)
T PRK11893 62 ----GI--SPQE----------------------LADRNSAAFKRLWEALNISYDDFIRTTD-PRHKEAVQEIFQRLLAN 112 (511)
T ss_pred ----CC--CHHH----------------------HHHHHHHHHHHHHHHhCCCcCCceeCCC-HHHHHHHHHHHHHHHHC
Confidence 11 1111 1234667899999999999999988871 24556999999999999
Q ss_pred CCeeccCCCc
Q psy15414 1392 GLLELDDGRK 1401 (1458)
Q Consensus 1392 G~~Ye~~ga~ 1401 (1458)
|++|++++..
T Consensus 113 G~iY~~~~~~ 122 (511)
T PRK11893 113 GDIYLGKYEG 122 (511)
T ss_pred CCEEEeeeee
Confidence 9999988765
No 120
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.59 E-value=2.5e-07 Score=114.99 Aligned_cols=188 Identities=15% Similarity=0.076 Sum_probs=117.6
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
++|+.=| .|+|+|+|||||+|++++-+.++| .|+...+--|.|.-. ..
T Consensus 92 ~~vvtRF-aPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp--------------~R------------ 139 (560)
T TIGR00463 92 GEVVMRF-APNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDP--------------RR------------ 139 (560)
T ss_pred CeeEEEe-CCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCc--------------cc------------
Confidence 4565555 589999999999999999888886 344555555555311 00
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-ccccccchhHHHHHHHHH
Q psy15414 684 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLE 762 (1458)
Q Consensus 684 iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS~~~~~v~~vi~~L~ 762 (1458)
+.++ +.+.+.++++.||+..+. ...|.|.+...+++++|+
T Consensus 140 ----------~~~e-----------------------------~~~~I~edL~wLGi~~d~~~~qSd~~~~y~~~a~~Li 180 (560)
T TIGR00463 140 ----------VKPE-----------------------------AYDMILEDLDWLGVKGDEVVYQSDRIEEYYDYCRKLI 180 (560)
T ss_pred ----------ccHH-----------------------------HHHHHHHHHHHcCCCCCccccccccHHHHHHHHHHHH
Confidence 0000 233456667778875432 235777778888888999
Q ss_pred HcCCeEee------------CC----------------------------cEEEEc--CCC-CC---CCcEEEcCCCCcc
Q psy15414 763 KKGLLELD------------DG----------------------------RKIMWG--EDR-GS---IPMTIVKSDGGFT 796 (1458)
Q Consensus 763 ~kG~~ye~------------dG----------------------------a~~~~~--d~~-d~---~~~vL~ksDGt~t 796 (1458)
++|++|.. +| ..++.. |-. .. -+.|+.|.++++-
T Consensus 181 ~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~h 260 (560)
T TIGR00463 181 EMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTPH 260 (560)
T ss_pred HcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCCc
Confidence 99988841 11 111111 100 00 1356777765432
Q ss_pred ---------CCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCccccc
Q psy15414 797 ---------YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKT 867 (1458)
Q Consensus 797 ---------Y~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSK 867 (1458)
|.|=|+|...+.. ..|.+++| .|.++..--++...+..++|+.. +.+.|.++ +.+++|.|+||
T Consensus 261 ~~~Gd~~~~~PtYdfA~~VDD~-l~gITHvi--Rg~E~~~nT~rq~yl~~~lg~~~---P~~~h~~~--l~~~~~~kLsk 332 (560)
T TIGR00463 261 PRTGDKYKVYPTMDFSVPIDDH-LLGVTHVL--RGKDHIDNERKQQYIYMYFGWEL---PEFIHWGR--LKINDVRTLST 332 (560)
T ss_pred cccCCEEEEEeccccceEeecc-cCCCCeEE--echhhhcCCHHHHHHHHHcCCCC---CeEEEEcc--eecCCCcEecc
Confidence 3333455555544 25778887 88888886667677778899843 46788888 55667779998
Q ss_pred ccC
Q psy15414 868 RSG 870 (1458)
Q Consensus 868 R~G 870 (1458)
|..
T Consensus 333 k~k 335 (560)
T TIGR00463 333 SSK 335 (560)
T ss_pred hhh
Confidence 773
No 121
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.58 E-value=1.3e-07 Score=112.94 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=93.0
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHH-hchhcCcCCCCCccHHHHHHHHHHhCC
Q psy15414 1239 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAH-LQDKFPDYLTKSPPIADLQAFYKESKK 1317 (1458)
Q Consensus 1239 sanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~-~~~~~p~~~~~~~~i~~~~~~~~~~~~ 1317 (1458)
-++|+|++|+||+|+.++.|+++|.++..||+|.--.=..|+|..|+.-+.. +... |. ..+ .
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~-~~-----~~~-----------~ 71 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGIS-GK-----KDI-----------E 71 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCC-CC-----cch-----------h
Confidence 4689999999999999999999999999999999999999999888765543 2110 00 000 0
Q ss_pred CCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcc--ccCeeEeccccchhHHHHHHHHHHHHHCCCee
Q psy15414 1318 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD--RLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 1395 (1458)
Q Consensus 1318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv--~~d~~f~esges~~~~~v~~~~~~L~~~G~~Y 1395 (1458)
.++.++ +.+. -..-.+.+.+.++++|+.+|+ .||..+.-.. ..|...+.+++.+|.++|++|
T Consensus 72 ~~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~-~~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 72 KMGIAE-FNAK--------------CREFALRYVDEQEEQFQRLGVWVDWENPYKTMD-PEYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred hcCHHH-HHHH--------------HHHHHHHHHHHHHHHHHHhCceecCCCCeECCC-HHHHHHHHHHHHHHHHCCCEe
Confidence 011111 1110 112235577899999999999 7776655441 456679999999999999999
Q ss_pred ccCCC
Q psy15414 1396 LDDGR 1400 (1458)
Q Consensus 1396 e~~ga 1400 (1458)
+.++-
T Consensus 136 ~~~~~ 140 (338)
T cd00818 136 RGYKV 140 (338)
T ss_pred ccCCe
Confidence 98774
No 122
>PLN02224 methionine-tRNA ligase
Probab=98.56 E-value=3.3e-07 Score=116.38 Aligned_cols=134 Identities=13% Similarity=0.191 Sum_probs=102.3
Q ss_pred CCCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHH
Q psy15414 1227 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 1306 (1458)
Q Consensus 1227 ~~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~ 1306 (1458)
.+.+++..|=-.=++|+|++|+||+|+.+++|+++|.++..||+|..-....|.|.+|..-|...
T Consensus 65 ~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~--------------- 129 (616)
T PLN02224 65 VDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAAN--------------- 129 (616)
T ss_pred CCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHc---------------
Confidence 56667777655555999999999999999999999999999999999999999999988655321
Q ss_pred HHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHH
Q psy15414 1307 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVP 1386 (1458)
Q Consensus 1307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~ 1386 (1458)
|. +..+ ..+.+...+++.++.+|+.||.++.-+. ..|...+++++.
T Consensus 130 ---------g~--~p~e----------------------~~~~~~~~~~~~~~~l~I~~D~f~rTt~-~~h~~~vq~~f~ 175 (616)
T PLN02224 130 ---------GR--NPPE----------------------HCDIISQSYRTLWKDLDIAYDKFIRTTD-PKHEAIVKEFYA 175 (616)
T ss_pred ---------CC--ChHH----------------------HHHHHHHHHHHHHHHcCCCCCcCeeCCC-HHHHHHHHHHHH
Confidence 11 1111 1123445778899999999998776551 356679999999
Q ss_pred HHHHCCCeeccCCCcc------cccccCC
Q psy15414 1387 YLEKKGLLELDDGRKI------MWGEDRG 1409 (1458)
Q Consensus 1387 ~L~~~G~~Ye~~ga~~------~~gddkd 1409 (1458)
+|.++|++|+.+--.+ .|.++.+
T Consensus 176 ~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~ 204 (616)
T PLN02224 176 RVFANGDIYRADYEGLYCVNCEEYKDEKE 204 (616)
T ss_pred HHHHCCCEEEeeeeeeecCCCCCCCCHHH
Confidence 9999999999654432 4666655
No 123
>KOG1149|consensus
Probab=98.53 E-value=1.4e-06 Score=101.54 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=89.1
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
+.|+.||||-|||... ...+.. ..+..++| .|.+|---...+..+.+|+||.. +++.|++. +++++|.|
T Consensus 213 D~VvmKSDgfPTYHfA---nVVDDh-~M~IsHVi--RGeEWlpST~KH~lLYkAfgW~p---PkFaHlpL--l~n~d~sK 281 (524)
T KOG1149|consen 213 DPVVMKSDGFPTYHFA---NVVDDH-LMGISHVI--RGEEWLPSTLKHILLYKAFGWQP---PKFAHLPL--LLNPDGSK 281 (524)
T ss_pred CcEEEecCCCcceeee---eeecch-hcchhhee--ecchhccccHHHHHHHHHhCCCC---Cceeeeee--eecCCcch
Confidence 4689999999999853 333433 25778888 89999988889999999999954 47889998 67789999
Q ss_pred cccccCCccchHHHHHHH--HHHHHHHHhhcCCC-----CCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHH
Q psy15414 865 FKTRSGDTVKLSELLDEG--LRRSLDKLKDKNRH-----TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 937 (1458)
Q Consensus 865 MSKR~GnvI~l~DLLde~--~~~a~~~~~~~~~~-----~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l 937 (1458)
.|||.|. +.+.++.++. .+...+.+...|.. .-++-+| .-+. |.+.....++..+|.+++-
T Consensus 282 LSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~e---Lieq--------F~i~~ltk~~a~ld~ekL~ 349 (524)
T KOG1149|consen 282 LSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEE---LIEQ--------FSIERLTKSNAILDSEKLR 349 (524)
T ss_pred hhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHH---HHHH--------hchhhhcccccccCHHHHH
Confidence 9999995 4677776653 23345555544421 1122222 2222 2334444556667777765
Q ss_pred hhh
Q psy15414 938 DDR 940 (1458)
Q Consensus 938 ~~n 940 (1458)
.+|
T Consensus 350 ~~N 352 (524)
T KOG1149|consen 350 FLN 352 (524)
T ss_pred HHH
Confidence 554
No 124
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.52 E-value=1.2e-07 Score=105.92 Aligned_cols=83 Identities=16% Similarity=0.104 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHCCCeeccCCCcccccccCCCCCceEEecCCccccchhh
Q psy15414 1349 MICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSD 1428 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~G~~Ye~~ga~~~~gddkdr~~~vl~rsdG~~tY~~~D 1428 (1458)
.+.+.|.+||+|+|+.||..+.|| .+. +.|.+++++|.++|++|..- .-|+ +- ++ .||| +
T Consensus 51 ~~~~~I~~dL~wlGl~wD~~~~QS--~r~-~~Y~~~~~~L~~~g~aY~~~----~~~~-~~----~i-----~ptY---~ 110 (238)
T cd00807 51 EYVDSIKEDVKWLGIKPYKVTYAS--DYF-DQLYEYAEQLIKKGKAYVHH----RTGD-KW----CI-----YPTY---D 110 (238)
T ss_pred HHHHHHHHHHHHcCCCCCCceecc--cCH-HHHHHHHHHHHHcCCeecCC----CCCC-CE----EE-----Eecc---c
Confidence 456799999999999999888888 653 68999999999999999921 0111 11 22 3666 4
Q ss_pred hHHHHhhhhhcCCCEEEEeecccc
Q psy15414 1429 LAAIRQRIEEEKADWIVYVTDHRS 1452 (1458)
Q Consensus 1429 iayh~~K~~~rgfd~~i~~~dhhg 1452 (1458)
.|--.+-.. .|-++||.|.||.-
T Consensus 111 lA~vVDD~~-~gIThVvRG~D~l~ 133 (238)
T cd00807 111 FAHPIVDSI-EGITHSLCTLEFED 133 (238)
T ss_pred cceEeeccc-cCCCeEEechhhhc
Confidence 556666675 79999999999864
No 125
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=98.51 E-value=5.4e-07 Score=116.63 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=92.3
Q ss_pred eEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHH
Q psy15414 1232 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 1311 (1458)
Q Consensus 1232 ~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~ 1311 (1458)
++.|=-.=+.|+|++|+||+|+.+.+|+++|.++..||+|.--+...|.|.-|..-|...
T Consensus 5 ~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~-------------------- 64 (648)
T PRK12267 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKA-------------------- 64 (648)
T ss_pred CEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHc--------------------
Confidence 455534445788999999999999999999999999999999999999997665433221
Q ss_pred HHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccc-hhHHHHHHHHHHHHH
Q psy15414 1312 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES-FYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges-~~~~~v~~~~~~L~~ 1390 (1458)
|. +. +..++.+.+.++++|+.||+.||.|++.+ + .+...+++++.+|.+
T Consensus 65 ----g~--~~----------------------~e~~d~~~~~fk~~l~~lgI~~D~f~rTt--~~~h~~~v~~~~~~L~~ 114 (648)
T PRK12267 65 ----GK--TP----------------------QEYVDEISAGFKELWKKLDISYDKFIRTT--DERHKKVVQKIFEKLYE 114 (648)
T ss_pred ----CC--CH----------------------HHHHHHHHHHHHHHHHHcCCCCCCCeeCC--CHHHHHHHHHHHHHHHH
Confidence 11 11 11234567799999999999999999988 5 344589999999999
Q ss_pred CCCeeccC
Q psy15414 1391 KGLLELDD 1398 (1458)
Q Consensus 1391 ~G~~Ye~~ 1398 (1458)
+|++|..+
T Consensus 115 kG~IY~~~ 122 (648)
T PRK12267 115 QGDIYKGE 122 (648)
T ss_pred CCCEEEee
Confidence 99999864
No 126
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=98.50 E-value=4.9e-07 Score=114.63 Aligned_cols=114 Identities=13% Similarity=0.209 Sum_probs=90.4
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHHHHHhCCC
Q psy15414 1239 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 1318 (1458)
Q Consensus 1239 sanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~ 1318 (1458)
-++|+|++|+||+|..++.|+++|.++..||+|.--.-..|.|.-|..-|... |.
T Consensus 7 ~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~------------------------g~- 61 (530)
T TIGR00398 7 LPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE------------------------GL- 61 (530)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHc------------------------CC-
Confidence 46999999999999999999999999999999999888999987665544321 11
Q ss_pred CChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHCCCeeccC
Q psy15414 1319 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 1398 (1458)
Q Consensus 1319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~G~~Ye~~ 1398 (1458)
+.. ...+.+.+.++++++.+|+.||.+...+ ++.+...+.+++++|.++|++|+++
T Consensus 62 -~~~----------------------e~~~~~~~~~~~~l~~LgI~~D~~~~t~-~~~~~~~v~~~~~~L~~kG~iY~~~ 117 (530)
T TIGR00398 62 -TPK----------------------ELVDKYHEEFKDDWKWLNISFDRFIRTT-DEEHKEIVQKIFQKLKENGYIYEKE 117 (530)
T ss_pred -CHH----------------------HHHHHHHHHHHHHHHHhCCCCCCCccCC-CHHHHHHHHHHHHHHHHCCCEEEee
Confidence 111 1123466799999999999999876544 2456668999999999999999988
Q ss_pred CCc
Q psy15414 1399 GRK 1401 (1458)
Q Consensus 1399 ga~ 1401 (1458)
+..
T Consensus 118 ~~v 120 (530)
T TIGR00398 118 IKQ 120 (530)
T ss_pred eEE
Confidence 665
No 127
>PLN02563 aminoacyl-tRNA ligase
Probab=98.49 E-value=4.1e-07 Score=120.52 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=82.2
Q ss_pred CCcEEEEEecCCCCCCC-ccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhh
Q psy15414 212 KKLRVLVDFSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 290 (1458)
Q Consensus 212 ~~~~V~VEfsSpN~akp-lHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~ 290 (1458)
+++.++++=- |.|+|. |||||+|+.+++|.+||-.+..||+|.-.-=....|..+-..+. +
T Consensus 109 k~k~~v~~~~-PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~--~--------------- 170 (963)
T PLN02563 109 KPKFYVLDMF-PYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAI--E--------------- 170 (963)
T ss_pred CCCEEEEeCC-CCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHH--H---------------
Confidence 4444555544 999995 99999999999999999999999999876655555555432110 0
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecccc-----hhhhhhhHH
Q psy15414 291 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHME 365 (1458)
Q Consensus 291 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~~g-----Es~y~~~~~ 365 (1458)
. ...+ +..++...+.+.+.+++||+++|+.- +..|...+.
T Consensus 171 -------~----g~~p------------------------~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q 215 (963)
T PLN02563 171 -------T----GTHP------------------------KITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQ 215 (963)
T ss_pred -------c----CCCh------------------------HHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHH
Confidence 0 0001 01122334556777889999999632 345667789
Q ss_pred HHHHHHHHCCCeeecCC
Q psy15414 366 QLVPYLEKKGLLELDDG 382 (1458)
Q Consensus 366 ~vv~~L~~kg~~~~~dG 382 (1458)
.++..|-++|++|+.+.
T Consensus 216 ~~F~~L~~~GliY~~~~ 232 (963)
T PLN02563 216 WIFLQLLKRGLAYQAEV 232 (963)
T ss_pred HHHHHHHHCCCEEeeee
Confidence 99999999999997653
No 128
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.49 E-value=4.5e-07 Score=111.61 Aligned_cols=96 Identities=18% Similarity=0.292 Sum_probs=70.4
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 1310 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~ 1310 (1458)
.+|..=|. ++|||+||+||+|+|.+--..||-. -| .. .||.
T Consensus 10 g~v~tRFA-PsPtG~LHiGharaAlln~l~Ar~~--gG-~~------------------iLRi----------------- 50 (523)
T PLN03233 10 GQIVTRFP-PEPSGYLHIGHAKAALLNDYYARRY--KG-RL------------------ILRF----------------- 50 (523)
T ss_pred CeEEEeeC-CCCCCcccHHHHHHHHHHHHHHHHh--CC-EE------------------EEEE-----------------
Confidence 45777675 8999999999999999988877631 11 10 0221
Q ss_pred HHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHH
Q psy15414 1311 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~ 1390 (1458)
+|.|+. +...++.+.|++||+|+|+.||..+.|| .++ +.|.++..+|.+
T Consensus 51 --------------------------EDTDp~--R~~~e~~~~I~~dL~WLGl~wD~~~~qS--dr~-~~y~~~a~~Li~ 99 (523)
T PLN03233 51 --------------------------DDTNPS--KEKAEFEESIIEDLGKIEIKPDSVSFTS--DYF-EPIRCYAIILIE 99 (523)
T ss_pred --------------------------CCCCCC--ccchHHHHHHHHHHHHhCCCCCCCcccc--ccH-HHHHHHHHHHHH
Confidence 122221 1223467899999999999999888888 654 688999999999
Q ss_pred CCCeec
Q psy15414 1391 KGLLEL 1396 (1458)
Q Consensus 1391 ~G~~Ye 1396 (1458)
+|.+|.
T Consensus 100 ~G~AY~ 105 (523)
T PLN03233 100 EGLAYM 105 (523)
T ss_pred cCCeEe
Confidence 999997
No 129
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=1.6e-06 Score=111.55 Aligned_cols=162 Identities=14% Similarity=0.181 Sum_probs=106.0
Q ss_pred EEEeeCCc----cccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhc
Q psy15414 818 VYVTDLGQ----GVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK 893 (1458)
Q Consensus 818 IyVvg~dq----~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~ 893 (1458)
+||-|.+| -+||.-...++.-.|+-+...+.-..+..|||++.+|+|||||+||+|+|+|+++++|.
T Consensus 529 ~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGA--------- 599 (814)
T COG0495 529 LYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGA--------- 599 (814)
T ss_pred eeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCc---------
Confidence 67788884 34444444566666752111111123444678876789999999999999999999862
Q ss_pred CCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhc
Q psy15414 894 NRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAA 972 (1458)
Q Consensus 894 ~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~ 972 (1458)
+++|.|+++..+ .+|.+|+.+.+... .-+| .|+..+........
T Consensus 600 --------------------Dt~Rl~~m~~ap~~~d~~W~e~gv~g~----~rfL----~r~~~l~~~~~~~~------- 644 (814)
T COG0495 600 --------------------DTVRLYIMFAAPPEQDLEWSESGVEGA----RRFL----QRVWNLVKEHLEKL------- 644 (814)
T ss_pred --------------------hHHHHHHHhhCChhhCCCCChhhhHHH----HHHH----HHHHHHHHHhhhcc-------
Confidence 357888888777 68877776554422 1234 46666655432110
Q ss_pred cCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhhhhh
Q psy15414 973 QSTPVSLEHEKE-FALAKTLLRMNDVLMLVTRD-LCLHHLCEYLYDISTAFSEFYDN 1027 (1458)
Q Consensus 973 ~~~~~~l~~~~e-~~Ll~~l~~f~~~v~~a~~~-~~p~~l~~yL~~LA~~fN~fy~~ 1027 (1458)
...++ .++ ..+...+.++...+.+.++. +..+.+..-+|+|.+.+..|...
T Consensus 645 ---~~~~~-~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~ 697 (814)
T COG0495 645 ---VEELT-KEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRR 697 (814)
T ss_pred ---ccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00111 222 56777888888999999888 88888989999998888776544
No 130
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.42 E-value=6.7e-07 Score=108.58 Aligned_cols=136 Identities=16% Similarity=0.204 Sum_probs=96.5
Q ss_pred EEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHHH
Q psy15414 1233 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 1312 (1458)
Q Consensus 1233 v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~~ 1312 (1458)
..|-..-++|+|++|+||+|+.+++|+++|.++..||+|..-.-..|.|.-|+.-+...... .. ..+
T Consensus 3 f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~-~~-----~~~------- 69 (382)
T cd00817 3 FVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGI-EG-----KTR------- 69 (382)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcc-cc-----cch-------
Confidence 44545567999999999999999999999999999999999999999998777665532110 00 000
Q ss_pred HHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEeccccchhHHHHHHHHHHHHH
Q psy15414 1313 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGESFYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esges~~~~~v~~~~~~L~~ 1390 (1458)
...+.++.... -+.-++.+.+.++++++.+|+.+| .++.-.. ..|...++.++.+|.+
T Consensus 70 ----~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~-~~~~~~v~~~f~~L~~ 129 (382)
T cd00817 70 ----HDLGREEFLEK---------------CWEWKEESGGKIREQLKRLGASVDWSREYFTMD-PGLSRAVQEAFVRLYE 129 (382)
T ss_pred ----hcCCHHHHHHH---------------HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCC-HHHHHHHHHHHHHHHH
Confidence 00122221111 112235577899999999998765 6665441 4676789999999999
Q ss_pred CCCeeccCCCc
Q psy15414 1391 KGLLELDDGRK 1401 (1458)
Q Consensus 1391 ~G~~Ye~~ga~ 1401 (1458)
+|++|....-.
T Consensus 130 ~G~iy~~~~~~ 140 (382)
T cd00817 130 KGLIYRDNRLV 140 (382)
T ss_pred CCCEEeeeeEE
Confidence 99999976554
No 131
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.41 E-value=8.5e-07 Score=109.36 Aligned_cols=126 Identities=14% Similarity=0.072 Sum_probs=70.3
Q ss_pred CccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCC-CCCcceEEEEEeEEEecCCCcccccccCCc
Q psy15414 794 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKTRMDFVGFGVVLGEDRKKFKTRSGDT 872 (1458)
Q Consensus 794 t~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~-~~~~~~~~H~~fg~V~~~~G~KMSKR~Gnv 872 (1458)
.|||. +|...+.. ..+.+++| .|.+|..+-+.-..+++.+++. .| .+..|+. ++.+|.|||||++..
T Consensus 182 yPtYd---fa~~vdD~-l~gITHvi--Rg~E~~~nt~~Y~~~~~~l~~~~~P-----~~~~F~r-ln~~~~kLSKRk~~~ 249 (522)
T TIGR00440 182 YPMYD---FTHCISDA-MENITHSL--CTLEFQDNRRLYDWVLDNIHIFPRP-----AQYEFSR-LNLEGTVLSKRKLAQ 249 (522)
T ss_pred EeCcC---Cceeehhc-cCCCceEe--ecHhhhhcHHHHHHHHHhcCccCCC-----ceEEEEE-ECCCCCCcccccchh
Confidence 45554 44444443 25778888 8999999888888888888874 22 2335555 345889999999864
Q ss_pred ---------------cchHHHHHHHH--HHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhh
Q psy15414 873 ---------------VKLSELLDEGL--RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDK 935 (1458)
Q Consensus 873 ---------------I~l~DLLde~~--~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~ 935 (1458)
.++..+.+.+. +...+.+...|....-+..++..+.. .+|-|+....++....||..+
T Consensus 250 ~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~-----~~r~f~~~~~~r~~av~d~~k 324 (522)
T TIGR00440 250 LVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLES-----CIREDLNENAPRAMAVIDPVE 324 (522)
T ss_pred ccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHH-----HHHHhhhhcCcccccccccce
Confidence 36777766532 22334444444221111111111111 244555555555555555555
Q ss_pred H
Q psy15414 936 M 936 (1458)
Q Consensus 936 ~ 936 (1458)
+
T Consensus 325 l 325 (522)
T TIGR00440 325 V 325 (522)
T ss_pred E
Confidence 4
No 132
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.41 E-value=3.5e-07 Score=113.84 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=71.9
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+.+|..=| .++|||+||+||+|+|++-+.+|| +|...-- ||
T Consensus 99 ~g~V~tRF-aPsPtG~LHIGharaalln~~~Ar-----~~~G~~i----------------LR----------------- 139 (567)
T PRK04156 99 KGKVVMRF-APNPSGPLHLGHARAAILNDEYAK-----MYGGKFI----------------LR----------------- 139 (567)
T ss_pred CCeEEEEe-CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEE----------------Ee-----------------
Confidence 45677655 699999999999999999999998 1211110 11
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLE 1389 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~ 1389 (1458)
.+|.|+...+....+.+.|++||+|+|+.||..+.+| .++ +.|.+++++|.
T Consensus 140 --------------------------idDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qS--dr~-~~y~~~a~~Li 190 (567)
T PRK04156 140 --------------------------FEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQS--DRL-EIYYEYARKLI 190 (567)
T ss_pred --------------------------EccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCcc--cCH-HHHHHHHHHHH
Confidence 1122221111223455899999999999999988888 654 67899999999
Q ss_pred HCCCeec
Q psy15414 1390 KKGLLEL 1396 (1458)
Q Consensus 1390 ~~G~~Ye 1396 (1458)
++|++|.
T Consensus 191 ~~G~AY~ 197 (567)
T PRK04156 191 EMGGAYV 197 (567)
T ss_pred HcCCCcc
Confidence 9999998
No 133
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.36 E-value=9.6e-07 Score=113.46 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=48.0
Q ss_pred CcEEEcCCCCc---------cCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeE
Q psy15414 785 PMTIVKSDGGF---------TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFG 855 (1458)
Q Consensus 785 ~~vL~ksDGt~---------tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg 855 (1458)
+.|+.|.++++ .|-|=|+|...+.. ..+.+++| .|.+|...-+....++++||+..|. +. ...||
T Consensus 192 D~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~-l~gITHvl--Rg~E~~~~~~~~~~l~~~l~~~~~~-P~--~~~f~ 265 (771)
T PRK14703 192 DPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDA-IEGVTHSI--CTLEFENNRAIYDWVLDHLGPWPPR-PR--QYEFA 265 (771)
T ss_pred CCEEEEEcCCCCCCcCCCCCcCCCccccceeecc-ccCCcEEE--ecHhhhhccHHHHHHHHHhCCCCCC-cc--eeEEE
Confidence 45777764322 12333345444443 24778887 8999999999999999999642221 11 22334
Q ss_pred EEecCCCccccccc
Q psy15414 856 VVLGEDRKKFKTRS 869 (1458)
Q Consensus 856 ~V~~~~G~KMSKR~ 869 (1458)
.+.. .|.+||||+
T Consensus 266 rl~l-~~~~lSKRk 278 (771)
T PRK14703 266 RLAL-GYTVMSKRK 278 (771)
T ss_pred Eecc-CCCcccccC
Confidence 3333 577999998
No 134
>PLN02907 glutamate-tRNA ligase
Probab=98.35 E-value=9.4e-07 Score=113.86 Aligned_cols=96 Identities=15% Similarity=0.312 Sum_probs=70.7
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 1310 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~ 1310 (1458)
.+|..=|. ++|||+||+||+|.|.+-...||- +-| .. + ||.
T Consensus 212 ~~v~tRFa-PsPtG~LHiG~ar~al~n~~~Ar~--~~G-~~----i--------------LR~----------------- 252 (722)
T PLN02907 212 GKVCTRFP-PEPSGYLHIGHAKAALLNQYFARR--YKG-KL----I--------------VRF----------------- 252 (722)
T ss_pred CceEEeeC-CCCCCcccHHHHHHHHHHHHHHHH--hCC-EE----E--------------EEe-----------------
Confidence 35777775 899999999999999999888872 222 11 0 221
Q ss_pred HHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHH
Q psy15414 1311 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~ 1390 (1458)
+|.|+.+ ...++.+.|.+||+|+|+.||..++|| .++ +.+.+...+|.+
T Consensus 253 --------------------------eDTdp~r--~~~e~~~~I~~dl~wLG~~~d~~~~qS--~r~-~~y~~~a~~Li~ 301 (722)
T PLN02907 253 --------------------------DDTNPSK--ESDEFVENILKDIETLGIKYDAVTYTS--DYF-PQLMEMAEKLIK 301 (722)
T ss_pred --------------------------cCCCCCc--CChHHHHHHHHHHHHcCCCCCCccccc--ccH-HHHHHHHHHHHH
Confidence 1112211 112467899999999999999888888 654 688999999999
Q ss_pred CCCeec
Q psy15414 1391 KGLLEL 1396 (1458)
Q Consensus 1391 ~G~~Ye 1396 (1458)
+|.+|.
T Consensus 302 ~G~aY~ 307 (722)
T PLN02907 302 EGKAYV 307 (722)
T ss_pred cCCeee
Confidence 999996
No 135
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=98.34 E-value=2e-06 Score=109.65 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=92.8
Q ss_pred eEEEeecCCCCCccccccchhHH-HHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHH
Q psy15414 1232 RVLVDFSSPNIAKEMHVGHLRST-IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 1310 (1458)
Q Consensus 1232 ~v~ve~vsanptgplh~gh~r~~-~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~ 1310 (1458)
++.|=-.-++|+|++|+||+|+. +..|+++|.++..|++|..-..+.|.|..|..-|...
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~------------------- 64 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE------------------- 64 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHc-------------------
Confidence 45554455677799999999999 9999999999999999999999999997776554421
Q ss_pred HHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHH
Q psy15414 1311 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~ 1390 (1458)
|. +..+ ..+.+.+.++++++.+|+.||.+..-+. ..|...+.+++.+|.+
T Consensus 65 -----g~--~~~~----------------------~~~~~~~~~~~~~~~l~i~~d~~~~t~~-~~~~~~~~~~~~~L~~ 114 (556)
T PRK12268 65 -----GV--TPQE----------------------LADKYHEEHKEDFKKLGISYDLFTRTTS-PNHHEVVQEFFLKLYE 114 (556)
T ss_pred -----CC--CHHH----------------------HHHHHHHHHHHHHHHcCCcCCCCcCCCC-HHHHHHHHHHHHHHHH
Confidence 11 1111 1233557899999999999997554441 2566789999999999
Q ss_pred CCCeeccCCCc
Q psy15414 1391 KGLLELDDGRK 1401 (1458)
Q Consensus 1391 ~G~~Ye~~ga~ 1401 (1458)
+|++|+.++-.
T Consensus 115 ~G~~y~~~~~~ 125 (556)
T PRK12268 115 NGYIYKKTIEQ 125 (556)
T ss_pred CCCeEEeeeEE
Confidence 99999977665
No 136
>PLN02959 aminoacyl-tRNA ligase
Probab=98.33 E-value=6.2e-06 Score=111.45 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=53.7
Q ss_pred cEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHh
Q psy15414 214 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 274 (1458)
Q Consensus 214 ~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~ 274 (1458)
.+-.|.+-=|+++|+||+||++|-++.|.+||--+-.||+|.-.-=..-.|+-+-..+.-+
T Consensus 45 ~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~ 105 (1084)
T PLN02959 45 EKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKL 105 (1084)
T ss_pred CcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHH
Confidence 4679999999999999999999999999999999999999988887777788777665443
No 137
>PLN02859 glutamine-tRNA ligase
Probab=98.31 E-value=1.7e-06 Score=110.10 Aligned_cols=63 Identities=13% Similarity=-0.029 Sum_probs=46.1
Q ss_pred chHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCc
Q psy15414 801 DLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDT 872 (1458)
Q Consensus 801 DiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gnv 872 (1458)
|+|..++.. ..+.+++| .|.+|..+-+...-++++||+..| .+.|.+ +++.+|.|||||++..
T Consensus 445 dFA~~vdD~-legITHvL--Rg~E~~~~~~~y~wl~~aLg~~~P---~~~~f~---rLn~~~t~LSKRkl~~ 507 (788)
T PLN02859 445 DYAHCIVDS-LENITHSL--CTLEFETRRASYYWLLDSLGLYQP---YVWEYS---RLNVTNTVMSKRKLNR 507 (788)
T ss_pred ccccccccc-ccCCceEe--echhhhcCCHHHHHHHHHcCCCCC---cEEeee---eECCCCCcccCcCchh
Confidence 445444443 24777887 899999999998889999998543 455665 3567889999999753
No 138
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.30 E-value=1.1e-05 Score=99.12 Aligned_cols=233 Identities=18% Similarity=0.147 Sum_probs=139.5
Q ss_pred EEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHH
Q psy15414 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 294 (1458)
Q Consensus 215 ~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~ 294 (1458)
+|-+=-+.|-+=.+.|+||+|+.|.-|.|+|.|+..||+|.-+-=|-|.|..-|. +. ..+
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~----------~D-~gd--------- 80 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGD----------FD-DGE--------- 80 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCC----------cc-CCC---------
Confidence 4555556677777899999999999999999999999999977667787742221 00 001
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc--cchhhhhhhHHHHHHHHH
Q psy15414 295 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLE 372 (1458)
Q Consensus 295 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~--~gEs~y~~~~~~vv~~L~ 372 (1458)
|+ +.++|. +.|- -|..+++...+.|.+.+++|||.++. .-.+.+.+.|.++++.|.
T Consensus 81 ----------dK-Ii~~A~------~~g~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~ 138 (481)
T PRK14534 81 ----------DK-VVKAAR------ERGL-----TVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLE 138 (481)
T ss_pred ----------cH-HHHHHH------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHH
Confidence 11 111221 1221 14567777788888999999998763 123455677899999999
Q ss_pred HCCCeeecCCCeEEecCC----------------------------C-CCCceEEEe-----cCCccccchh--------
Q psy15414 373 KKGLLELDDGRKIMWGED----------------------------R-GSIPMTIVK-----SDGGFTYDTS-------- 410 (1458)
Q Consensus 373 ~kg~~~~~dGa~~~~~~~----------------------------~-~~~~~vl~k-----SDG~~tY~t~-------- 410 (1458)
++|++|+.+|.+...... + +..+.+|-| .+|.+++.++
T Consensus 139 ~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgW 218 (481)
T PRK14534 139 ENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSW 218 (481)
T ss_pred HCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcH
Confidence 999999998865421110 0 112455655 3554443221
Q ss_pred hH--HHHHHHhhhcCCCEEEE--ecCCchHHHHHHHHH-HHHHHcCCCCCCCccccccc----cccCCCcccccCHHHHH
Q psy15414 411 DL--AAIRQRIEEEKADWIVY--VTDHRSYHQVLQAIA-EEEKKQGISSSSSSQTKGTA----KKMNVPVRDRMSVRDYL 481 (1458)
Q Consensus 411 Di--A~~~~r~~~~~~d~iIy--v~D~~~~~~~~~a~~-~a~~~~g~~~~~~~~~~G~~----~kmskr~gt~~~l~~~L 481 (1458)
=| ++.-.++ ++...-|. +.|+.-.|+--..+. +++ .|......-++.|.. .|||||.|++.++.+.+
T Consensus 219 HiECsam~~~~--lg~~~DIH~GG~DliFPHHene~Aqs~a~--~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll 294 (481)
T PRK14534 219 HLECAAMNLEY--FKSTLDIHLGGVDHIGVHHINEIAIAECY--LNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLE 294 (481)
T ss_pred HHHHHHHHHHH--cCCcceEEecccccCCCcchhHHHHHhhh--cCCCcceEEEEecEEEecCceecccCCCcccHHHHH
Confidence 11 2222332 23222243 477754333222222 221 254332222344432 39999999999999988
Q ss_pred HH-HHhhhhhhcc
Q psy15414 482 SD-VFTHAVQVAF 493 (1458)
Q Consensus 482 ~e-ll~dAi~~a~ 493 (1458)
++ .-.+++|..+
T Consensus 295 ~~~~~~~alR~~l 307 (481)
T PRK14534 295 DQGFSPLDFRYFC 307 (481)
T ss_pred hcCCChhHHHHHH
Confidence 75 3446677764
No 139
>PLN02563 aminoacyl-tRNA ligase
Probab=98.29 E-value=4.1e-06 Score=111.27 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=86.5
Q ss_pred CceEEEEeeCCccCCc-cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 603 KLRVLVDFSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
++.++++ .=|+|+|. +||||+|+.+++|+++|+.+..||+|.+....+.+|..+...+... +.
T Consensus 110 ~k~~v~~-~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~--------g~------- 173 (963)
T PLN02563 110 PKFYVLD-MFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIET--------GT------- 173 (963)
T ss_pred CCEEEEe-CCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHc--------CC-------
Confidence 3334443 33999996 9999999999999999999999999999999999998875322100 00
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc-----ccccchhHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQ 756 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g-----eS~~~~~v~~ 756 (1458)
.| +..++..+..|.+.+++||+++++.. +..|...++.
T Consensus 174 -------------~p------------------------~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~ 216 (963)
T PLN02563 174 -------------HP------------------------KITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQW 216 (963)
T ss_pred -------------Ch------------------------HHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHH
Confidence 00 01134456778999999999998632 2357778999
Q ss_pred HHHHHHHcCCeEee
Q psy15414 757 LVPYLEKKGLLELD 770 (1458)
Q Consensus 757 vi~~L~~kG~~ye~ 770 (1458)
++.+|.++|++|+.
T Consensus 217 ~F~~L~~~GliY~~ 230 (963)
T PLN02563 217 IFLQLLKRGLAYQA 230 (963)
T ss_pred HHHHHHHCCCEEee
Confidence 99999999999964
No 140
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=98.28 E-value=3.6e-06 Score=108.02 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=91.2
Q ss_pred CCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
.+++..|-..-||++|+||+||++|.++.|+++|..+..||+|......+-+|..+...+... .+....
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~---l~~~~~-------- 89 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKK---LGIKEK-------- 89 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHH---TTTTSH--------
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHh---hccccc--------
Confidence 356788888999999999999999999999999999999999999999999999987644332 111000
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc-----ccccchhHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQ 756 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g-----eS~~~~~v~~ 756 (1458)
+....+ ..++|.+.+ +.+++...+.+.+.+.+||+++++.. ...|...+..
T Consensus 90 -----~~~~~~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~ 145 (601)
T PF00133_consen 90 -----KDRKDL-GREEFREEC------------------REWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWW 145 (601)
T ss_dssp -----HHCSCS-THHHHHHHH------------------HHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHH
T ss_pred -----cccccc-ccccchhhh------------------cchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHH
Confidence 000000 112333323 33566678889999999999876532 2235667899
Q ss_pred HHHHHHHcCCeEeeC
Q psy15414 757 LVPYLEKKGLLELDD 771 (1458)
Q Consensus 757 vi~~L~~kG~~ye~d 771 (1458)
++.+|.++|++|...
T Consensus 146 ~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 146 QFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCcEEeeC
Confidence 999999999999743
No 141
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.27 E-value=4.8e-06 Score=103.05 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=73.9
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHH
Q psy15414 1208 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 1287 (1458)
Q Consensus 1208 ~~~~~~~~~v~~~~~~~~~~~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l 1287 (1458)
++..+++..=+.+| .|| +|..=|. ++|||+||+||+|+|.+-...|+- .-| .. +
T Consensus 12 ~f~~~~~~~dl~~~-~~~------~v~tRFa-PsPtG~LHiG~ar~al~n~~~Ar~--~~G-~~----i----------- 65 (554)
T PRK05347 12 NFIRQIIDEDLASG-KHT------RVHTRFP-PEPNGYLHIGHAKSICLNFGLAQD--YGG-KC----N----------- 65 (554)
T ss_pred cHHHHHHHhHHhcC-CcC------ceEEEeC-CCCCCcccHHHHHHHHHHHHHHHH--hCC-EE----E-----------
Confidence 34555555555544 233 5767665 899999999999999998888873 112 11 1
Q ss_pred HHHhchhcCcCCCCCccHHHHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC-
Q psy15414 1288 IAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN- 1366 (1458)
Q Consensus 1288 ~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d- 1366 (1458)
||. +|.|+.+ ...++.+.|.+||+|+|+.||
T Consensus 66 ---LRi-------------------------------------------eDTd~~r--~~~e~~~~I~~dL~wLGi~~d~ 97 (554)
T PRK05347 66 ---LRF-------------------------------------------DDTNPEK--EDQEYVDSIKEDVRWLGFDWSG 97 (554)
T ss_pred ---EEE-------------------------------------------CCCCCCc--CChHHHHHHHHHHHHcCCCCCC
Confidence 221 1111111 112466899999999999995
Q ss_pred eeEeccccchhHHHHHHHHHHHHHCCCeec
Q psy15414 1367 VTLTERGESFYQKHMEQLVPYLEKKGLLEL 1396 (1458)
Q Consensus 1367 ~~f~esges~~~~~v~~~~~~L~~~G~~Ye 1396 (1458)
..+.|| .++ +.+.+...+|.++|++|.
T Consensus 98 ~~~~qS--~r~-~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 98 ELRYAS--DYF-DQLYEYAVELIKKGKAYV 124 (554)
T ss_pred Cceeee--cCH-HHHHHHHHHHHHcCCEee
Confidence 567777 554 445566679999999997
No 142
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.27 E-value=2.9e-05 Score=96.06 Aligned_cols=130 Identities=25% Similarity=0.298 Sum_probs=95.5
Q ss_pred cEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHH
Q psy15414 214 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 293 (1458)
Q Consensus 214 ~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~ 293 (1458)
.+|-+=-+.|-+-.+.|+||+|+.|.-|.|+|.|+..||+|.-+-=|-|.| |+.... + ..
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~--------hl~~~~-D--e~--------- 81 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVG--------HLTDDA-D--SG--------- 81 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeecccc--------ccccCC-c--CC---------
Confidence 367777788999999999999999999999999999999999887778987 331100 0 00
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceeccc--chhhhhhhHHHHHHHH
Q psy15414 294 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--GESFYQKHMEQLVPYL 371 (1458)
Q Consensus 294 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~~--gEs~y~~~~~~vv~~L 371 (1458)
++.+.++|. +.|- -|+.+++...+.|.+.+++|||.++.. -.+.+.+.|.++++.|
T Consensus 82 -----------ddKii~~A~------~~g~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L 139 (490)
T PRK14536 82 -----------EDKMVKSAQ------EHGK-----SVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRL 139 (490)
T ss_pred -----------ChHHHHHHH------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHH
Confidence 111111221 1221 146778888888999999999987431 1255667899999999
Q ss_pred HHCCCeeecCCCeE
Q psy15414 372 EKKGLLELDDGRKI 385 (1458)
Q Consensus 372 ~~kg~~~~~dGa~~ 385 (1458)
.++|++|+.+|.++
T Consensus 140 ~~kG~aY~~~~~vy 153 (490)
T PRK14536 140 EARGHTYCAGGNVY 153 (490)
T ss_pred HHCCCEEEECCeEE
Confidence 99999999988764
No 143
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.26 E-value=2.2e-06 Score=113.58 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=97.9
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+++..+-..-+||||+||+||+++.+++|+++|..+..||+|..-.--..+|--++.-+....-.-|.
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~------------ 104 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKD------------ 104 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcc------------
Confidence 45677877789999999999999999999999999999999998888888887776544431100010
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEeccccchhHHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGESFYQKHMEQLVPY 1387 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esges~~~~~v~~~~~~ 1387 (1458)
.+..+ .|.+.. ..-..++.+.++++++.+|+.+| +.+.-.. ..|...+..++.+
T Consensus 105 --------~~~~~-~f~~~~--------------~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d-~~~~~~v~~~f~~ 160 (800)
T PRK13208 105 --------DISRE-EFIELC--------------RELTDEDEKKFRELWRRLGLSVDWSLEYQTIS-PEYRRISQKSFLD 160 (800)
T ss_pred --------cCCHH-HHHHHH--------------HHHHHHHHHHHHHHHHHhCeeeccCCCcccCC-HHHHHHHHHHHHH
Confidence 01111 222211 12234577889999999998665 6555441 4666799999999
Q ss_pred HHHCCCeeccCCCc
Q psy15414 1388 LEKKGLLELDDGRK 1401 (1458)
Q Consensus 1388 L~~~G~~Ye~~ga~ 1401 (1458)
|.++|++|....-.
T Consensus 161 L~~~Gliy~~~~~v 174 (800)
T PRK13208 161 LYKKGLIYRAEAPV 174 (800)
T ss_pred HHHCCCeeecCccc
Confidence 99999999965443
No 144
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=3.1e-06 Score=108.84 Aligned_cols=119 Identities=23% Similarity=0.233 Sum_probs=91.5
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
+|.-|=.-=|.|+|.|||||.|+..+||+++|+.|..||+|..=+...=+|..+.-.+...
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~------------------- 94 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI------------------- 94 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHh-------------------
Confidence 4666666679999999999999999999999999999999998888888777664322211
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecccc-----cccchhHHHHH
Q psy15414 684 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE-----SFYQKHMEQLV 758 (1458)
Q Consensus 684 iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~ge-----S~~~~~v~~vi 758 (1458)
.-||. .++...++.+++.+++||.+++++.| -.|...++-.+
T Consensus 95 ---------------------------~~~P~------~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F 141 (814)
T COG0495 95 ---------------------------GTDPA------KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQF 141 (814)
T ss_pred ---------------------------CCChH------HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHH
Confidence 01222 13455677889999999998887422 24777888899
Q ss_pred HHHHHcCCeEeeCCcE
Q psy15414 759 PYLEKKGLLELDDGRK 774 (1458)
Q Consensus 759 ~~L~~kG~~ye~dGa~ 774 (1458)
-+|.++|++|..+..+
T Consensus 142 ~kL~ekGL~y~~~~~V 157 (814)
T COG0495 142 LKLYEKGLAYRKEAPV 157 (814)
T ss_pred HHHHHCCCEEeccccc
Confidence 9999999999877654
No 145
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.20 E-value=1.8e-05 Score=88.35 Aligned_cols=177 Identities=20% Similarity=0.215 Sum_probs=112.5
Q ss_pred EEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHHH
Q psy15414 216 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 295 (1458)
Q Consensus 216 V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~y 295 (1458)
+-+==+.|-|-+++|+||+|+.++.|.++|.++..||+|.=.-=+.|.|..+-.-+..
T Consensus 21 ~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~---------------------- 78 (213)
T cd00672 21 VTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE---------------------- 78 (213)
T ss_pred ceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH----------------------
Confidence 3444467888899999999999999999999999999998877777877655322210
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhccee-cccchhhhhhhHHHHHHHHHHC
Q psy15414 296 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TERGESFYQKHMEQLVPYLEKK 374 (1458)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f-~~~gEs~y~~~~~~vv~~L~~k 374 (1458)
+..+ |+.+++...+.|.+.++.|||++ +....
T Consensus 79 ------------------------~g~~------p~e~~~~~~~~f~~~~~~l~i~~~d~~~r----------------- 111 (213)
T cd00672 79 ------------------------EGLS------WKEVADYYTKEFFEDMKALNVLPPDVVPR----------------- 111 (213)
T ss_pred ------------------------cCCC------HHHHHHHHHHHHHHHHHHcCCCCCCccee-----------------
Confidence 0001 35666677777888888999887 32211
Q ss_pred CCeeecCCCeEEecCCCCCCceEEEecCCccccchhhHHHHHHHhhhcCCCEEEEecCCchHHHHHHHHHHHHHHcCCCC
Q psy15414 375 GLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRSYHQVLQAIAEEEKKQGISS 454 (1458)
Q Consensus 375 g~~~~~dGa~~~~~~~~~~~~~vl~kSDG~~tY~t~DiA~~~~r~~~~~~d~iIyv~D~~~~~~~~~a~~~a~~~~g~~~ 454 (1458)
+ .-..--|.+..-+ ...+|.-.=+.|+...++-...+... ...|-+.
T Consensus 112 ----------------------t---------Wh~ec~am~~~~l-g~~~dih~~G~Dl~fpH~~~~~a~~~-a~~g~~~ 158 (213)
T cd00672 112 ----------------------V---------WHIECSAMAMKYL-GETFDIHGGGVDLIFPHHENEIAQSE-AATGKPF 158 (213)
T ss_pred ----------------------e---------hhHHHHHHHHHHc-CCCccEEeecCCCCcChHHHHHHHHH-HHhCCCC
Confidence 0 3333333333333 24577666678876433222211111 1124322
Q ss_pred CCCccccccc----cccCCCcccccCHHHHHHHHHhhhhhhccc
Q psy15414 455 SSSSQTKGTA----KKMNVPVRDRMSVRDYLSDVFTHAVQVAFP 494 (1458)
Q Consensus 455 ~~~~~~~G~~----~kmskr~gt~~~l~~~L~ell~dAi~~a~~ 494 (1458)
.....+.|.+ .|||||.|+.+++.+.+++...+|+|..+.
T Consensus 159 ~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l 202 (213)
T cd00672 159 ARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALL 202 (213)
T ss_pred CcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHH
Confidence 2222222221 399999999999999999988899998753
No 146
>PLN02946 cysteine-tRNA ligase
Probab=98.20 E-value=4.2e-05 Score=95.61 Aligned_cols=221 Identities=14% Similarity=0.049 Sum_probs=135.4
Q ss_pred cEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHH
Q psy15414 214 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 293 (1458)
Q Consensus 214 ~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~ 293 (1458)
.+|-+=-+.|-+=++.||||+|+.|.-|.|+|.|++.||+|.-+-=+-|.|.-|-.-+.
T Consensus 79 ~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~--------------------- 137 (557)
T PLN02946 79 GKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARAN--------------------- 137 (557)
T ss_pred CceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHH---------------------
Confidence 35667677899999999999999999999999999999999988777776554422110
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc--cchhhhhhhHHHHHHHH
Q psy15414 294 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYL 371 (1458)
Q Consensus 294 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~--~gEs~y~~~~~~vv~~L 371 (1458)
+.|- -|..+++...+.|.+.++.|||.-.. --.+.+-+.|.++++.|
T Consensus 138 --------------------------~~g~-----~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~L 186 (557)
T PLN02946 138 --------------------------ELGE-----DPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQI 186 (557)
T ss_pred --------------------------HcCC-----CHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHH
Confidence 0010 13456666677778888899986321 22355667889999999
Q ss_pred HHCCCeeecCCCeEEecCC--------------------------C-CCCceEEEec--CCccccchhhH----------
Q psy15414 372 EKKGLLELDDGRKIMWGED--------------------------R-GSIPMTIVKS--DGGFTYDTSDL---------- 412 (1458)
Q Consensus 372 ~~kg~~~~~dGa~~~~~~~--------------------------~-~~~~~vl~kS--DG~~tY~t~Di---------- 412 (1458)
.++|++|+.+|.++..+.. + +..+.+|-|. .|.+.+.+ --
T Consensus 187 i~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~S-PWG~GRPGWHIE 265 (557)
T PLN02946 187 LDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDS-PWGPGRPGWHIE 265 (557)
T ss_pred HHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccC-CCCCCCCcHHHH
Confidence 9999999999876532210 0 1123555542 33332222 11
Q ss_pred -HHHHHHhhhcCCCEEEEecCCch-----HHHHHHHHHHHHHHcCCCCCCCccccccc----cccCCCcccccCHHHHHH
Q psy15414 413 -AAIRQRIEEEKADWIVYVTDHRS-----YHQVLQAIAEEEKKQGISSSSSSQTKGTA----KKMNVPVRDRMSVRDYLS 482 (1458)
Q Consensus 413 -A~~~~r~~~~~~d~iIyv~D~~~-----~~~~~~a~~~a~~~~g~~~~~~~~~~G~~----~kmskr~gt~~~l~~~L~ 482 (1458)
++.-.++--..+|---=+.|+.- .+.+..++ .|-.....-+++|.+ .||||+.||+.++.+.++
T Consensus 266 CSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~------~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~ 339 (557)
T PLN02946 266 CSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA------CCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVID 339 (557)
T ss_pred HHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHH------hCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHH
Confidence 22222322122332222466431 11112211 232111111234543 399999999999999998
Q ss_pred HHHhhhhhhcc
Q psy15414 483 DVFTHAVQVAF 493 (1458)
Q Consensus 483 ell~dAi~~a~ 493 (1458)
+...+++|..+
T Consensus 340 ~y~~dalR~~l 350 (557)
T PLN02946 340 LYHPLALRLFL 350 (557)
T ss_pred hcCccceeeee
Confidence 87777888765
No 147
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=98.18 E-value=8.7e-06 Score=105.83 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=90.9
Q ss_pred eEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHH
Q psy15414 1232 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 1311 (1458)
Q Consensus 1232 ~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~ 1311 (1458)
++.|--.=++|+|++|+||+|..++.|+++|.++..||+|.--.-..|.|.-|..-|...
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~-------------------- 62 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE-------------------- 62 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHc--------------------
Confidence 445544445899999999999999999999999999999987777777776665544321
Q ss_pred HHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHC
Q psy15414 1312 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 1391 (1458)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~ 1391 (1458)
|. +..+ ..+.+.+.++++++.+|+.+|.+..-. +..|...+.+.+.+|.++
T Consensus 63 ----g~--~p~e----------------------~~~~~~~~~~~~~~~l~i~~d~f~rtt-~~~h~~~v~~~~~~L~~~ 113 (673)
T PRK00133 63 ----GI--TPEE----------------------LIARYHAEHKRDFAGFGISFDNYGSTH-SEENRELAQEIYLKLKEN 113 (673)
T ss_pred ----CC--CHHH----------------------HHHHHHHHHHHHHHHhCCCCCCCccCC-cHHHHHHHHHHHHHHHHC
Confidence 11 1111 123455788999999999999755443 135667999999999999
Q ss_pred CCeeccCCCc
Q psy15414 1392 GLLELDDGRK 1401 (1458)
Q Consensus 1392 G~~Ye~~ga~ 1401 (1458)
|++|+.++..
T Consensus 114 G~iy~~~~~~ 123 (673)
T PRK00133 114 GYIYEKTIEQ 123 (673)
T ss_pred CCEEEeeeEE
Confidence 9999987665
No 148
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.07 E-value=4.7e-06 Score=103.86 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=69.4
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 1310 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~ 1310 (1458)
.+|..=|. ++|||+||+||+|+|++-..+|+- .|-. |+ ||.
T Consensus 92 ~~vvtRFa-PsPtG~LHiGharaalln~~~Ar~---~~G~----~i--------------LRi----------------- 132 (560)
T TIGR00463 92 GEVVMRFA-PNPSGPLHIGHARAAILNQYFAKK---YKGK----LI--------------IRF----------------- 132 (560)
T ss_pred CeeEEEeC-CCCCCCccHHHHHHHHHHHHHHHh---cCCE----EE--------------EEe-----------------
Confidence 46777775 899999999999999998888851 1110 00 121
Q ss_pred HHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHH
Q psy15414 1311 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~ 1390 (1458)
+|.|+. +....+.+.|.+||+|+|+.||..+.+| .++ +.+.+.+.+|.+
T Consensus 133 --------------------------dDTDp~--R~~~e~~~~I~edL~wLGi~~d~~~~qS--d~~-~~y~~~a~~Li~ 181 (560)
T TIGR00463 133 --------------------------DDTDPR--RVKPEAYDMILEDLDWLGVKGDEVVYQS--DRI-EEYYDYCRKLIE 181 (560)
T ss_pred --------------------------CcCCcc--cccHHHHHHHHHHHHHcCCCCCcccccc--ccH-HHHHHHHHHHHH
Confidence 111111 1112366899999999999999988888 554 678899999999
Q ss_pred CCCeec
Q psy15414 1391 KGLLEL 1396 (1458)
Q Consensus 1391 ~G~~Ye 1396 (1458)
+|++|.
T Consensus 182 ~G~AY~ 187 (560)
T TIGR00463 182 MGKAYV 187 (560)
T ss_pred cCCcee
Confidence 999997
No 149
>PLN02843 isoleucyl-tRNA synthetase
Probab=98.07 E-value=1.8e-05 Score=106.09 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=95.9
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
+++..|-..-||++|.+||||++|.++.|+++|..+..||+|......+.+|..+..-+.. +.+.
T Consensus 31 ~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek---~l~~------------ 95 (974)
T PLN02843 31 GESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQ---SLDQ------------ 95 (974)
T ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHH---Hhch------------
Confidence 4568888899999999999999999999999999999999999999999999988743211 0000
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc-----ccccchhHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 757 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g-----eS~~~~~v~~v 757 (1458)
+.+..+ ...+|.+.++ .+++.+...+.+.+.+||++.++.. ...|...+..+
T Consensus 96 ----~~~~~~-~~~~f~~~c~------------------~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~ 152 (974)
T PLN02843 96 ----EARKEL-TPIKLRAKAA------------------KFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEV 152 (974)
T ss_pred ----hhhccC-CHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHH
Confidence 000000 1123333343 3455566678889999999766421 22466789999
Q ss_pred HHHHHHcCCeEeeCC
Q psy15414 758 VPYLEKKGLLELDDG 772 (1458)
Q Consensus 758 i~~L~~kG~~ye~dG 772 (1458)
+.+|.++|++|...-
T Consensus 153 f~~l~~~GlIyr~~k 167 (974)
T PLN02843 153 FGQMFLNGYIYRGRK 167 (974)
T ss_pred HHHHHHCCCEEecce
Confidence 999999999997543
No 150
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=98.06 E-value=1.5e-05 Score=105.31 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=87.1
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHHHHHhCCCC
Q psy15414 1240 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 1319 (1458)
Q Consensus 1240 anptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~ 1319 (1458)
++|+|+||+||+|+.++.|+++|..+..||+|..-..-.++|--++.-+... |.
T Consensus 41 Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~------------------------g~-- 94 (805)
T PRK00390 41 PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKT------------------------GT-- 94 (805)
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHc------------------------CC--
Confidence 7888999999999999999999999999999999999999997776544221 11
Q ss_pred ChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcccc--CeeEeccccchhHHHHHHHHHHHHHCCCeecc
Q psy15414 1320 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL--NVTLTERGESFYQKHMEQLVPYLEKKGLLELD 1397 (1458)
Q Consensus 1320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~--d~~f~esges~~~~~v~~~~~~L~~~G~~Ye~ 1397 (1458)
+..+ -...+.+.++++|+.+|+.+ |..+.-.. ..|...+..++.+|.++|++|.+
T Consensus 95 ~~~~----------------------~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~-~~~~~~v~~~f~~L~~~Gliy~~ 151 (805)
T PRK00390 95 HPAE----------------------WTYENIANMKKQLKSLGFSYDWSREIATCD-PEYYKWTQWIFLKLYEKGLAYRK 151 (805)
T ss_pred CHHH----------------------HHHHHHHHHHHHHHHhCCcccCCCCeecCC-HHHHHHHHHHHHHHHHCCCEEEe
Confidence 1111 11234578999999999955 46665441 45667899999999999999997
Q ss_pred CCCc
Q psy15414 1398 DGRK 1401 (1458)
Q Consensus 1398 ~ga~ 1401 (1458)
+.-.
T Consensus 152 ~~~v 155 (805)
T PRK00390 152 ESPV 155 (805)
T ss_pred cCEE
Confidence 5543
No 151
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.06 E-value=9.8e-06 Score=101.01 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=69.8
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+.+|..=|. ++|||+||+||+|.|.+--..||-. -| .. .||.
T Consensus 50 ~~~v~tRFA-PsPtGyLHIGharaAllN~l~Ar~~--gG-~~------------------iLRi---------------- 91 (601)
T PTZ00402 50 EGKVVTRFP-PEASGFLHIGHAKAALINSMLADKY--KG-KL------------------VFRF---------------- 91 (601)
T ss_pred CCeeEEeeC-CCCCCcccHHHHHHHHHHHHHHHHh--CC-EE------------------EEEE----------------
Confidence 346777775 8999999999999999888777632 11 11 0222
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCe-eEeccccchhHHHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYL 1388 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~-~f~esges~~~~~v~~~~~~L 1388 (1458)
+|.|+.+ ...++.+.|++||+|+|+.||. .+.|| .++ +.+.+++++|
T Consensus 92 ---------------------------EDTDp~R--~~~e~~d~IleDL~WLGl~wDe~~~~QS--dr~-d~y~e~a~~L 139 (601)
T PTZ00402 92 ---------------------------DDTNPSK--EKEHFEQAILDDLATLGVSWDVGPTYSS--DYM-DLMYEKAEEL 139 (601)
T ss_pred ---------------------------cCCCCcc--cCHHHHHHHHHHHHHCCCCCCCceeecc--ccH-HHHHHHHHHH
Confidence 1112211 1224668999999999999996 67777 553 7899999999
Q ss_pred HHCCCeec
Q psy15414 1389 EKKGLLEL 1396 (1458)
Q Consensus 1389 ~~~G~~Ye 1396 (1458)
.++|++|.
T Consensus 140 i~~G~AY~ 147 (601)
T PTZ00402 140 IKKGLAYC 147 (601)
T ss_pred HHcCCEEE
Confidence 99999995
No 152
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.05 E-value=1.6e-05 Score=105.26 Aligned_cols=119 Identities=17% Similarity=0.150 Sum_probs=89.4
Q ss_pred EEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHHH
Q psy15414 1233 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 1312 (1458)
Q Consensus 1233 v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~~ 1312 (1458)
+.++ .-++|+|+|||||+|+.+++|+++|.+++.||+|..-.--.+.|--++..|...
T Consensus 32 ~v~~-~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~--------------------- 89 (842)
T TIGR00396 32 YILD-MFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKR--------------------- 89 (842)
T ss_pred EEEc-CCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHc---------------------
Confidence 4443 357899999999999999999999999999999999998899997776654321
Q ss_pred HHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccc--cCeeEeccccchhHHHHHHHHHHHHH
Q psy15414 1313 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR--LNVTLTERGESFYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~--~d~~f~esges~~~~~v~~~~~~L~~ 1390 (1458)
|. +..+ -.....+.++++|+.+|+. ||..+.-.. ..|...++.++.+|-+
T Consensus 90 ---g~--~p~~----------------------~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d-~~y~~~~~~~F~~L~~ 141 (842)
T TIGR00396 90 ---GI--HPAK----------------------WTYENIANMKKQLQALGFSYDWDREIATCD-PEYYKWTQWIFLELFE 141 (842)
T ss_pred ---CC--CHHH----------------------HHHHHHHHHHHHHHHhCCcccCCCCcccCC-HHHHHHHHHHHHHHHH
Confidence 11 1111 1123456889999999965 566666551 3566789999999999
Q ss_pred CCCeeccCCCc
Q psy15414 1391 KGLLELDDGRK 1401 (1458)
Q Consensus 1391 ~G~~Ye~~ga~ 1401 (1458)
+|++|..+.-.
T Consensus 142 kGliy~~~~~v 152 (842)
T TIGR00396 142 KGLAYVKEADV 152 (842)
T ss_pred CCCeEeeccce
Confidence 99999976554
No 153
>PLN02381 valyl-tRNA synthetase
Probab=98.05 E-value=1.2e-05 Score=108.41 Aligned_cols=134 Identities=18% Similarity=0.244 Sum_probs=92.2
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+++..|-..-+||||+|||||+++.++.|+++|..+..||+|..-+--..+|--++.....
T Consensus 127 ~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek------------------- 187 (1066)
T PLN02381 127 KPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEK------------------- 187 (1066)
T ss_pred CCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHH-------------------
Confidence 4456777888999999999999999999999999999999999888777777544433210
Q ss_pred HHHHHhCC---CCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcccc--CeeEeccccchhHHHHHHH
Q psy15414 1310 AFYKESKK---RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL--NVTLTERGESFYQKHMEQL 1384 (1458)
Q Consensus 1310 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~--d~~f~esges~~~~~v~~~ 1384 (1458)
++..+.|. .+..++ |.+..++ -..++.+.|+++++.+|+.+ ++.|.-.. .-|...+..+
T Consensus 188 ~l~~~~~~~~~~~~re~-f~~~~~~--------------~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d-~~~~~~v~~~ 251 (1066)
T PLN02381 188 KLMRERHLTRHDIGREE-FVSEVWK--------------WKDEYGGTILNQLRRLGASLDWSRECFTMD-EQRSKAVTEA 251 (1066)
T ss_pred HhHhhcCCChhhCCHHH-HHHHHHH--------------HHHHHHHHHHHHHHHhCchhccCCccccCC-HHHHHHHHHH
Confidence 01111111 112222 3222221 12456788999999999555 45433331 3565689999
Q ss_pred HHHHHHCCCeeccC
Q psy15414 1385 VPYLEKKGLLELDD 1398 (1458)
Q Consensus 1385 ~~~L~~~G~~Ye~~ 1398 (1458)
+.+|.++|++|...
T Consensus 252 F~~L~~~GlIyr~~ 265 (1066)
T PLN02381 252 FVRLYKEGLIYRDI 265 (1066)
T ss_pred HHHHHHCCCEEecc
Confidence 99999999999953
No 154
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.05 E-value=1.1e-05 Score=107.92 Aligned_cols=135 Identities=18% Similarity=0.244 Sum_probs=92.7
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHH-hchhcCcCCCCCccHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAH-LQDKFPDYLTKSPPIADL 1308 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~-~~~~~p~~~~~~~~i~~~ 1308 (1458)
+++..|=..-+|+||+||+||+++.++.|+++|..+..||+|..-+--..+|-=++..+.. +... |...
T Consensus 32 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~-------g~~~--- 101 (861)
T TIGR00422 32 KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAE-------GKTK--- 101 (861)
T ss_pred CCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhccc-------CCch---
Confidence 4567776777899999999999999999999999999999998888888888655544331 1110 1000
Q ss_pred HHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEeccccchhHHHHHHHHH
Q psy15414 1309 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGESFYQKHMEQLVP 1386 (1458)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esges~~~~~v~~~~~ 1386 (1458)
..+..+ .|.+..+ .-+.++.+.++++++.+|+.+| +.|.-.. ..|...|..++.
T Consensus 102 --------~~~~~e-~f~~~~~--------------~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d-~~~~~~v~~~F~ 157 (861)
T TIGR00422 102 --------HDLGRE-EFREKIW--------------EWKEESGGTIKNQIKRLGASLDWSRERFTMD-EGLSKAVKEAFV 157 (861)
T ss_pred --------hhCCHH-HHHHHHH--------------HHHHHHHHHHHHHHHHhCeeeecCCCcCcCC-HHHHHHHHHHHH
Confidence 001112 2222221 1235577899999999996666 3222221 346679999999
Q ss_pred HHHHCCCeeccC
Q psy15414 1387 YLEKKGLLELDD 1398 (1458)
Q Consensus 1387 ~L~~~G~~Ye~~ 1398 (1458)
+|.++|++|...
T Consensus 158 ~L~~~GlIy~~~ 169 (861)
T TIGR00422 158 RLYEKGLIYRGE 169 (861)
T ss_pred HHHHCCCeeecC
Confidence 999999999954
No 155
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=98.05 E-value=2.2e-05 Score=105.32 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=96.5
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
+++..+--.-|+++|.+||||++|.++.|+++|+.+..||+|.+....+-+|..+..-+.... ... +. ...++
T Consensus 53 ~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~---~~~-~~--~~~~~- 125 (961)
T PRK13804 53 RPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKY---RAK-GK--NKDEV- 125 (961)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhh---hhc-CC--ChHhC-
Confidence 345778888899999999999999999999999999999999999999999999874332110 000 00 00000
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc-----ccccchhHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 757 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g-----eS~~~~~v~~v 757 (1458)
.-.+|.+.++ .++...++.+.+.+.+||+++++.. +..|...+..+
T Consensus 126 -----------~~~~f~~~c~------------------~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~ 176 (961)
T PRK13804 126 -----------PVAEFRKECR------------------EYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIARE 176 (961)
T ss_pred -----------CHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHH
Confidence 1123333333 3445567788899999999887632 22466788999
Q ss_pred HHHHHHcCCeEeeCC
Q psy15414 758 VPYLEKKGLLELDDG 772 (1458)
Q Consensus 758 i~~L~~kG~~ye~dG 772 (1458)
+.+|.++|++|...-
T Consensus 177 F~~l~~kGliyr~~k 191 (961)
T PRK13804 177 FGKFAAKGQLYRGSK 191 (961)
T ss_pred HHHHHHCCCEEeCCc
Confidence 999999999997543
No 156
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=98.03 E-value=2.6e-05 Score=94.97 Aligned_cols=111 Identities=15% Similarity=0.249 Sum_probs=83.2
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHHHHHhCCCC
Q psy15414 1240 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 1319 (1458)
Q Consensus 1240 anptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~ 1319 (1458)
+-|.|++|+||+...+.+|++||.++..|++|.----..+.|..|..-|.....
T Consensus 8 pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~-------------------------- 61 (391)
T PF09334_consen 8 PYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGI-------------------------- 61 (391)
T ss_dssp EETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS--------------------------
T ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCC--------------------------
Confidence 357899999999999999999999999999998888888889877766554321
Q ss_pred ChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHCCCeeccCC
Q psy15414 1320 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 1399 (1458)
Q Consensus 1320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~G~~Ye~~g 1399 (1458)
++.+ -++.+.+.+++.++.+++.||.+.+-+. ..+...+++++.+|.++|++|+++-
T Consensus 62 ~p~~----------------------~~~~~~~~~~~~~~~~~I~~D~F~rTt~-~~h~~~v~~i~~~L~~~G~I~~~~~ 118 (391)
T PF09334_consen 62 DPEE----------------------FCDKYSAKFKELLEALNISYDRFIRTTD-DRHKEFVQEIFKRLYDNGYIYKREY 118 (391)
T ss_dssp -HHH----------------------HHHHHHHHHHHHHHHTT---SEEEETTS-HHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHH----------------------HHHHHHHHHHHHHHHcCCCCcceeCCCC-HHHHHHHHHHHHHHHhcCceeeccc
Confidence 1111 1234567999999999999999887652 4666799999999999999999653
No 157
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=98.02 E-value=6.5e-05 Score=90.45 Aligned_cols=120 Identities=18% Similarity=0.078 Sum_probs=91.8
Q ss_pred CCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHH
Q psy15414 1229 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 1308 (1458)
Q Consensus 1229 ~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~ 1308 (1458)
.|.+|.+=-+.|.|=+|.|+||+|..+..|+++|.|+..||+|.---=+.|.|-.|..-|...
T Consensus 6 ~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~----------------- 68 (384)
T PRK12418 6 PGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARD----------------- 68 (384)
T ss_pred CCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHc-----------------
Confidence 344666655689999999999999999999999999999999998887888886665544321
Q ss_pred HHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcc-ccCeeEeccccchhHHHHHHHHHH
Q psy15414 1309 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD-RLNVTLTERGESFYQKHMEQLVPY 1387 (1458)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv-~~d~~f~esges~~~~~v~~~~~~ 1387 (1458)
|. +..+ ..+.+.+...+|++.|++ .+|.+..-+ .- .+.+.+.++.
T Consensus 69 -------G~--~~~e----------------------~a~~~~~~f~~d~~~Lni~~~~~~~raT--e~-i~~~~~~i~~ 114 (384)
T PRK12418 69 -------GV--DWRD----------------------LAEREIALFREDMEALRVLPPRDYVGAV--ES-IPEVVELVEK 114 (384)
T ss_pred -------CC--CHHH----------------------HHHHHHHHHHHHHHHhCCCCCCccccCC--CC-HHHHHHHHHH
Confidence 11 1111 123355678899999997 778777766 32 3578999999
Q ss_pred HHHCCCeeccCC
Q psy15414 1388 LEKKGLLELDDG 1399 (1458)
Q Consensus 1388 L~~~G~~Ye~~g 1399 (1458)
|.++|++|+++|
T Consensus 115 L~~kG~aY~~~~ 126 (384)
T PRK12418 115 LLASGAAYVVDD 126 (384)
T ss_pred HHHCCCEEEeCC
Confidence 999999999998
No 158
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=98.00 E-value=1.4e-05 Score=108.07 Aligned_cols=136 Identities=15% Similarity=0.251 Sum_probs=92.9
Q ss_pred CCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHH
Q psy15414 1229 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 1308 (1458)
Q Consensus 1229 ~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~ 1308 (1458)
.+.+..|-..-+||||+|||||+++.++.|+++|..+..||+|..-+--..+|--++.....
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~------------------ 119 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEK------------------ 119 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHH------------------
Confidence 35567888888999999999999999999999999999999999877777777332211110
Q ss_pred HHHHHHhCC---CCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcccc--CeeEeccccchhHHHHHH
Q psy15414 1309 QAFYKESKK---RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL--NVTLTERGESFYQKHMEQ 1383 (1458)
Q Consensus 1309 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~--d~~f~esges~~~~~v~~ 1383 (1458)
.+..+.|. .+..+ .|.+..++ -...+.+.|+++|+.+|+.+ ++.|.-.. .-|...+..
T Consensus 120 -~l~~~~~~~~~~~~~e-~f~~~~~~--------------w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d-~~~~~~v~~ 182 (995)
T PTZ00419 120 -KLMKEENKTRHDLGRE-EFLKKVWE--------------WKDKHGNNICNQLRRLGSSLDWSREVFTMD-EQRSKAVKE 182 (995)
T ss_pred -HHHHhcCCChHHcCHH-HHHHHHHH--------------HHHHHHHHHHHHHHHhCceeeCCCCcCcCC-HHHHHHHHH
Confidence 01011111 01222 23332222 13457789999999999555 46544331 345568999
Q ss_pred HHHHHHHCCCeeccCC
Q psy15414 1384 LVPYLEKKGLLELDDG 1399 (1458)
Q Consensus 1384 ~~~~L~~~G~~Ye~~g 1399 (1458)
++.+|.++|++|...-
T Consensus 183 ~F~~l~~~Gliyr~~~ 198 (995)
T PTZ00419 183 AFVRLYEDGLIYRDTR 198 (995)
T ss_pred HHHHHHHCCCEEecce
Confidence 9999999999999543
No 159
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.99 E-value=1.2e-05 Score=103.59 Aligned_cols=114 Identities=23% Similarity=0.321 Sum_probs=77.7
Q ss_pred CccchHHHHHHHHHcCCCCCCCCCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHH
Q psy15414 1206 SRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 1285 (1458)
Q Consensus 1206 ~~~~~~~~~~~v~~~~~~~~~~~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~ 1285 (1458)
+++|..+++..=+..| .+| +|..=|. ++|||+||+||+|+|.+-..+|+- +.| . |+
T Consensus 12 ~~~f~~~~~~~~l~~g-~~~------~v~tRFa-PsPtG~lHiGhar~alln~~~A~~--~~G-~----~~--------- 67 (771)
T PRK14703 12 SPNFITEIIEEDLEAG-RYP------RVVTRFP-PEPNGYLHIGHAKSILLNFGIARD--YGG-R----CH--------- 67 (771)
T ss_pred chhHHHHHHHHHHhcC-CCC------ceEEEeC-cCCCCcccHHHHHHHHHHHHHHHH--hCC-E----EE---------
Confidence 4456666666655544 222 4766665 899999999999999998888763 222 1 11
Q ss_pred HHHHHhchhcCcCCCCCccHHHHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcccc
Q psy15414 1286 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 1365 (1458)
Q Consensus 1286 ~l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~ 1365 (1458)
||. +|.|+.+ ....+.+.|.+||+|||+.|
T Consensus 68 -----LR~-------------------------------------------eDTd~~r--~~~e~~~~I~~dl~wLG~~w 97 (771)
T PRK14703 68 -----LRM-------------------------------------------DDTNPET--EDTEYVEAIKDDVRWLGFDW 97 (771)
T ss_pred -----EEe-------------------------------------------CCCCCCc--CChHHHHHHHHHHHHcCCCC
Confidence 121 1111111 11246689999999999999
Q ss_pred Ce-eEeccccchhHHHHHHHHHHHHHCCCeec
Q psy15414 1366 NV-TLTERGESFYQKHMEQLVPYLEKKGLLEL 1396 (1458)
Q Consensus 1366 d~-~f~esges~~~~~v~~~~~~L~~~G~~Ye 1396 (1458)
|. .+.|| .++ +.+.+...+|.++|++|.
T Consensus 98 d~~~~~qS--~~~-~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 98 GEHLYYAS--DYF-ERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred CCCceEee--cCH-HHHHHHHHHHHHcCCccc
Confidence 85 46676 543 678899999999999998
No 160
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.97 E-value=2.4e-05 Score=97.51 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=44.4
Q ss_pred EEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCch
Q psy15414 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 263 (1458)
Q Consensus 215 ~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~ 263 (1458)
+++|+=.=+ |+|+.||||+|..+.+|.++|.++..|++|.=+....|+
T Consensus 19 ~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~ 66 (515)
T TIGR00467 19 LYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNY 66 (515)
T ss_pred eEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 588886656 999999999999999999999999999999999999997
No 161
>PLN02943 aminoacyl-tRNA ligase
Probab=97.94 E-value=2.3e-05 Score=105.10 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=91.3
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+++..+-..-+||||+|||||+++.++.|+++|..+..||+|..-.--..+|-=++....
T Consensus 87 ~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~ve-------------------- 146 (958)
T PLN02943 87 GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVE-------------------- 146 (958)
T ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHH--------------------
Confidence 445666566689999999999999999999999999999999887666666733332211
Q ss_pred HHHHHhCCC---CChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcc--ccCeeEeccccchhHHHHHHH
Q psy15414 1310 AFYKESKKR---FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD--RLNVTLTERGESFYQKHMEQL 1384 (1458)
Q Consensus 1310 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv--~~d~~f~esges~~~~~v~~~ 1384 (1458)
+.+...|.. +. -+.|.+..++ -...+...|+++++.+|+ +|++.|.-.. ..|...+..+
T Consensus 147 k~l~~~~~~~~~~~-re~f~~~~~~--------------~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d-~~~~~~v~~~ 210 (958)
T PLN02943 147 KMLASEGIKRTDLG-RDEFTKRVWE--------------WKEKYGGTITNQIKRLGASCDWSRERFTLD-EQLSRAVVEA 210 (958)
T ss_pred HHHHHcCCChhhCC-HHHHHHHHHH--------------HHHHHHHHHHHHHHHhCcceecCCCcccCC-HHHHHHHHHH
Confidence 111111210 11 1223332222 124566789999999998 5555444331 4566789999
Q ss_pred HHHHHHCCCeeccCCC
Q psy15414 1385 VPYLEKKGLLELDDGR 1400 (1458)
Q Consensus 1385 ~~~L~~~G~~Ye~~ga 1400 (1458)
+-+|-++|++|...--
T Consensus 211 F~~l~~~Gliyr~~~~ 226 (958)
T PLN02943 211 FVRLHEKGLIYQGSYM 226 (958)
T ss_pred HHHHHHCCCEEecCce
Confidence 9999999999995433
No 162
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.94 E-value=6.4e-05 Score=96.63 Aligned_cols=136 Identities=19% Similarity=0.243 Sum_probs=93.3
Q ss_pred CCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHH-hchhcCcCCCCCccHH
Q psy15414 1228 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAH-LQDKFPDYLTKSPPIA 1306 (1458)
Q Consensus 1228 ~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~-~~~~~p~~~~~~~~i~ 1306 (1458)
.++++..+=..-+|+||+||+||+++-++.|+++|.-+.+||+|..-+--.-+|--|+..+.. +...-.
T Consensus 20 ~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~---------- 89 (601)
T PF00133_consen 20 KNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEK---------- 89 (601)
T ss_dssp TTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSH----------
T ss_pred CCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhccccc----------
Confidence 345667776778899999999999999999999999999999999999999999888775542 211100
Q ss_pred HHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcc--ccCeeEeccccchhHHHHHHH
Q psy15414 1307 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD--RLNVTLTERGESFYQKHMEQL 1384 (1458)
Q Consensus 1307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv--~~d~~f~esges~~~~~v~~~ 1384 (1458)
... ..+..++ |.+.. +.-..++.+.++++++.+|+ +|++.|.-.. ..|...+..+
T Consensus 90 ------~~~-~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d-~~y~~~v~~~ 146 (601)
T PF00133_consen 90 ------KDR-KDLGREE-FREEC--------------REWAEEFIEEQKEQFKRLGVSIDWDREYFTMD-PEYEKFVWWQ 146 (601)
T ss_dssp ------HHC-SCSTHHH-HHHHH--------------HHHHHHHHHHHHHHHHHTT--SECTCEEETTS-HHHHHHHHHH
T ss_pred ------ccc-ccccccc-chhhh--------------cchhhhhhhhhhhhhhheeeecccCCceEECC-ccHhHHHHHH
Confidence 000 1122222 22211 11234567899999999995 6777666441 4677799999
Q ss_pred HHHHHHCCCeec
Q psy15414 1385 VPYLEKKGLLEL 1396 (1458)
Q Consensus 1385 ~~~L~~~G~~Ye 1396 (1458)
+.+|.++|++|.
T Consensus 147 F~~l~~kglIyr 158 (601)
T PF00133_consen 147 FKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHTTSEEE
T ss_pred HHHHHhcCcEEe
Confidence 999999999999
No 163
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.94 E-value=2.5e-05 Score=96.63 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=28.0
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 637 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil 637 (1458)
+++|+.=| .|+|+|+|||||+|++++-..+||-.
T Consensus 49 ~gkv~tRF-aPsPtG~LHiGharaalln~~~Ar~~ 82 (574)
T PTZ00437 49 GGKPYFRF-PPEPNGFLHIGHAKSMNLNFGSARAH 82 (574)
T ss_pred CCcEEEEe-CCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 34566555 68999999999999999998888853
No 164
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.92 E-value=2.3e-05 Score=105.85 Aligned_cols=134 Identities=15% Similarity=0.239 Sum_probs=91.6
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHH-HhchhcCcCCCCCccHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA-HLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~-~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
.+..|=-.-+||||+|||||+++.++.|+++|..+..||+|..-.--..+|-.++.... .+... + |...
T Consensus 48 ~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~--~----~~~~---- 117 (1052)
T PRK14900 48 PPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKT--E----KKSR---- 117 (1052)
T ss_pred CCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhc--c----CCCh----
Confidence 34445455689999999999999999999999999999999988888888877765332 22110 0 1000
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcccc--CeeE-eccccchhHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL--NVTL-TERGESFYQKHMEQLVP 1386 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~--d~~f-~esges~~~~~v~~~~~ 1386 (1458)
..+..++ |.+..++ -...+.+.|+++++.+|+.+ ++.| .-+ .-|...+..++.
T Consensus 118 -------~~~~~e~-f~~~~~~--------------~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d--~~~~~~v~~~F~ 173 (1052)
T PRK14900 118 -------HDLGREA-FLERVWA--------------WKEQYGSRIGEQHKALGASLDWQRERFTMD--EGLSRAVREVFV 173 (1052)
T ss_pred -------hhCCHHH-HHHHHHH--------------HHHHHHHHHHHHHHHhchheecCCCcCcCC--HHHHHHHHHHHH
Confidence 0122222 3222222 12446689999999999555 5533 333 446568999999
Q ss_pred HHHHCCCeeccC
Q psy15414 1387 YLEKKGLLELDD 1398 (1458)
Q Consensus 1387 ~L~~~G~~Ye~~ 1398 (1458)
+|.++|++|...
T Consensus 174 ~L~~~Gliyr~~ 185 (1052)
T PRK14900 174 RLHEEGLIYREK 185 (1052)
T ss_pred HHHHCCCEEecc
Confidence 999999999954
No 165
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.90 E-value=2.4e-05 Score=106.07 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=91.4
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHH-HhchhcCcCCCCCccHHHHHHHHHHhC
Q psy15414 1238 SSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA-HLQDKFPDYLTKSPPIADLQAFYKESK 1316 (1458)
Q Consensus 1238 vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~-~~~~~~p~~~~~~~~i~~~~~~~~~~~ 1316 (1458)
--+|+||++|+||+++.++.|+++|..+..||+|.+-+--..+|-=++..+. .+...-. ..|.+
T Consensus 109 gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k------~~i~~--------- 173 (1205)
T PTZ00427 109 GPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKK------EDILK--------- 173 (1205)
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcc------cchhh---------
Confidence 3579999999999999999999999999999999999999899977775543 2211000 01110
Q ss_pred CCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--cccCeeEeccccchhHHHHHHHHHHHHHCCCe
Q psy15414 1317 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY--DRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 1394 (1458)
Q Consensus 1317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~g--v~~d~~f~esges~~~~~v~~~~~~L~~~G~~ 1394 (1458)
+..+ .|.+.. +.-+..+.+.++++++.+| +.||..|.-.. ..|...+..++.+|-++|++
T Consensus 174 --~g~~-~f~e~c--------------~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d-~~~~~~v~~~f~~L~ekGlI 235 (1205)
T PTZ00427 174 --MGID-VYNEKC--------------RGIVLKYSNEWVKTVERIGRWIDFKNDYKTMD-KTFMESVWWVFSELYKNNYV 235 (1205)
T ss_pred --cCHH-HHHHHH--------------HHHHHHHHHHHHHHHHHhCcEEecCCCcCcCC-HHHHHHHHHHHHHHHHCCCE
Confidence 1111 122211 1223456788999999999 99998766541 45667899999999999999
Q ss_pred ecc
Q psy15414 1395 ELD 1397 (1458)
Q Consensus 1395 Ye~ 1397 (1458)
|..
T Consensus 236 Yr~ 238 (1205)
T PTZ00427 236 YKS 238 (1205)
T ss_pred Eec
Confidence 994
No 166
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.90 E-value=1.6e-05 Score=98.31 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=66.8
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 1310 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~ 1310 (1458)
.+|.+=|. ++|||+||+||+|.|.+--..|+-. |-.. + ||.
T Consensus 50 gkv~tRFa-PsPtG~LHiGharaalln~~~Ar~~---gG~~----i--------------LRi----------------- 90 (574)
T PTZ00437 50 GKPYFRFP-PEPNGFLHIGHAKSMNLNFGSARAH---GGKC----Y--------------LRY----------------- 90 (574)
T ss_pred CcEEEEeC-CCCCCcccHHHHHHHHHHHHHHHHh---CCEE----E--------------EEE-----------------
Confidence 35777775 8999999999999999988888742 2111 1 221
Q ss_pred HHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHH
Q psy15414 1311 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~ 1390 (1458)
+|.|+.+ ....+.+.|.+||+|+|+.||..+.+| .+++..+ +...+|.+
T Consensus 91 --------------------------EDTDp~r--~~~e~~~~I~~dL~wLGi~~D~~~~qS--~y~~~~y-e~A~~Li~ 139 (574)
T PTZ00437 91 --------------------------DDTNPET--EEQVYIDAIMEMVKWMGWKPDWVTFSS--DYFDQLH-EFAVQLIK 139 (574)
T ss_pred --------------------------CCCCccc--cChHHHHHHHHHHHHcCCCCCCCCcCc--hhHHHHH-HHHHHHHH
Confidence 1111111 122466899999999999999877776 5554345 56678999
Q ss_pred CCCeec
Q psy15414 1391 KGLLEL 1396 (1458)
Q Consensus 1391 ~G~~Ye 1396 (1458)
+|.+|.
T Consensus 140 ~G~AY~ 145 (574)
T PTZ00437 140 DGKAYV 145 (574)
T ss_pred cCCEEE
Confidence 999998
No 167
>PLN02610 probable methionyl-tRNA synthetase
Probab=97.90 E-value=5.9e-05 Score=98.98 Aligned_cols=119 Identities=10% Similarity=0.134 Sum_probs=90.9
Q ss_pred ceEEEeecCCCCCccccccchhHH-HHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRST-IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~-~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+++.|=-.=+.|+|++|+||+++. +..|++||.++..|++|.--.-..+.|.-|..-|...
T Consensus 17 ~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~------------------ 78 (801)
T PLN02610 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEE------------------ 78 (801)
T ss_pred CCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHc------------------
Confidence 367775555689999999999986 5589999999999999998888888897776544221
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLE 1389 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~ 1389 (1458)
| .+..+ .++.+.+.+++.++++|+.||.+.+-+. ..|...++.++.+|.
T Consensus 79 ------g--~~p~e----------------------~~d~~~~~~~~~~~~l~i~~D~f~rT~~-~~h~~~vq~~f~~L~ 127 (801)
T PLN02610 79 ------N--CTPKE----------------------ICDKYHAIHKEVYDWFDISFDKFGRTST-PQQTEICQAIFKKLM 127 (801)
T ss_pred ------C--CCHHH----------------------HHHHHHHHHHHHHHHcCCccccCccCCC-HHHHHHHHHHHHHHH
Confidence 1 11111 1233456788999999999998766551 356679999999999
Q ss_pred HCCCeeccC
Q psy15414 1390 KKGLLELDD 1398 (1458)
Q Consensus 1390 ~~G~~Ye~~ 1398 (1458)
++|++|++.
T Consensus 128 ~~G~Iy~~~ 136 (801)
T PLN02610 128 ENNWLSENT 136 (801)
T ss_pred HCCCEEEee
Confidence 999999954
No 168
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.89 E-value=4.2e-05 Score=102.73 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=96.8
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
.++..|=+.-+||||+||+||+|+.++.|++||..+..||+|..-+=-.-.|.=|...|..+...-+. ...+
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~-~~~~------- 95 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL-TIKN------- 95 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh-cccc-------
Confidence 45677777788999999999999999999999999999999987776667777766665544211000 0000
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEeccccchhHHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGESFYQKHMEQLVPY 1387 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esges~~~~~v~~~~~~ 1387 (1458)
+.... .++.++ |.++. + -...+.++.+.++++|+.+|+.+| +.|.-.. --|...+...+.+
T Consensus 96 --~~~~~-~i~~~~-i~~~~----------~--~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~d-p~y~~~v~~~f~~ 158 (938)
T TIGR00395 96 --YTEVH-AIPREE-LLKFT----------D--PEYIVEYFSREAESACKSMGYSIDWRRSFKTTD-PYYDRFIEWQMNK 158 (938)
T ss_pred --chhhc-cCCHHH-HHhhc----------C--HHHHHHHHHHHHHHHHHHhCceEECCCCccCCC-hhHHHHHHHHHHH
Confidence 00000 122222 22222 0 123446778899999999997665 5444331 4566789999999
Q ss_pred HHHCCCeecc
Q psy15414 1388 LEKKGLLELD 1397 (1458)
Q Consensus 1388 L~~~G~~Ye~ 1397 (1458)
|.++|++|..
T Consensus 159 L~e~G~iy~g 168 (938)
T TIGR00395 159 LKELGLIVKG 168 (938)
T ss_pred HHHCCCEecC
Confidence 9999999993
No 169
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.0001 Score=92.36 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=93.0
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 1310 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~ 1310 (1458)
+++.|=-.=+-|.|++|+||++..+.+|++||.+|..|++|.=--.-.+.|.-|..=|.....
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~----------------- 67 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGI----------------- 67 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCC-----------------
Confidence 455653334588999999999999999999999999999998888888889877766654432
Q ss_pred HHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHH
Q psy15414 1311 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~ 1390 (1458)
++.+ .++++...+++++++|++.||.+.+-.. ..+...+++.+.+|.+
T Consensus 68 ---------tP~e----------------------l~d~~~~~~~~~~~~l~IsfD~F~rTt~-~~h~~~vq~~f~~L~~ 115 (558)
T COG0143 68 ---------TPQE----------------------LVDKNHEEFKELFKALNISFDNFIRTTS-PEHKELVQEFFLKLYE 115 (558)
T ss_pred ---------CHHH----------------------HHHHHHHHHHHHHHHhCCcccccccCCC-HHHHHHHHHHHHHHHH
Confidence 1111 1233446888999999999999888652 4566799999999999
Q ss_pred CCCeeccC
Q psy15414 1391 KGLLELDD 1398 (1458)
Q Consensus 1391 ~G~~Ye~~ 1398 (1458)
+|++|++.
T Consensus 116 ~G~I~~~~ 123 (558)
T COG0143 116 NGDIYLRE 123 (558)
T ss_pred CCCEeccc
Confidence 99999954
No 170
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=97.87 E-value=0.00029 Score=88.51 Aligned_cols=237 Identities=18% Similarity=0.236 Sum_probs=130.4
Q ss_pred EEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHH
Q psy15414 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 294 (1458)
Q Consensus 215 ~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~ 294 (1458)
.++|+=.-+ |+|+.||||+|..+.+|.++|.|+..|++|.-+....|+|. + .+.|+... ..+ .
T Consensus 24 ~~~~~~g~~-psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~--------l-Rkvp~~~p----~~~---~ 86 (510)
T PRK00750 24 PVVVETGIG-PSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG--------L-RKVPDNVP----NQE---M 86 (510)
T ss_pred cEEEEeCCC-CCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc--------c-cccCCCCC----chH---H
Confidence 377775554 99999999999999999999999999999999999999985 1 12232111 000 0
Q ss_pred HHH-hhhhcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceeccc-chhhhh-hhH-HHHH
Q psy15414 295 YKE-SKKRFDE--DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-GESFYQ-KHM-EQLV 368 (1458)
Q Consensus 295 y~~-~~~~~~~--~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~~-gEs~y~-~~~-~~vv 368 (1458)
+.+ .++-+.. +| .|. -+.+++--.+.|.++++++||.++.. ..+.|. +.. +.+.
T Consensus 87 ~~~~~G~pl~~~p~p--------------~G~------~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~ 146 (510)
T PRK00750 87 LEEYLGKPLTEIPDP--------------FGC------HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAIL 146 (510)
T ss_pred HHHhcCcccccCCCC--------------CCC------chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHH
Confidence 000 0000000 00 011 13445555667788889999988742 223332 222 2333
Q ss_pred HHHHHCCCee----e-----cCCCeEEec---CCCCCCce-EEEec---CCccccc-------hhhHH----HHHHHhh-
Q psy15414 369 PYLEKKGLLE----L-----DDGRKIMWG---EDRGSIPM-TIVKS---DGGFTYD-------TSDLA----AIRQRIE- 420 (1458)
Q Consensus 369 ~~L~~kg~~~----~-----~dGa~~~~~---~~~~~~~~-vl~kS---DG~~tY~-------t~DiA----~~~~r~~- 420 (1458)
..|++.+.+. + -...++-|. +.-++... ++..- +||-+|. +.|+- =.-||++
T Consensus 147 ~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW 226 (510)
T PRK00750 147 TALENRDEIMEILLPYLGEERQATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDW 226 (510)
T ss_pred HHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCc
Confidence 3343333321 1 112222111 11111111 12122 2344562 23332 2223321
Q ss_pred -----hcCCCEEEEecCCch-HHHHHHHHHHHHHHcCCCCCCCcccc----cc-ccccCCCcccccCHHHHHHHHHhhhh
Q psy15414 421 -----EEKADWIVYVTDHRS-YHQVLQAIAEEEKKQGISSSSSSQTK----GT-AKKMNVPVRDRMSVRDYLSDVFTHAV 489 (1458)
Q Consensus 421 -----~~~~d~iIyv~D~~~-~~~~~~a~~~a~~~~g~~~~~~~~~~----G~-~~kmskr~gt~~~l~~~L~ell~dAi 489 (1458)
-++.|.-+++.||+. .......+.+. .+|+.+... +.. .. ..||||+.|+.+++.+.+...-.+++
T Consensus 227 ~~rW~~l~Vd~e~~GkDh~~~s~~~~~~i~~~--ilg~~~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~l 303 (510)
T PRK00750 227 PMRWAALGVDFEPFGKDHASASYDTSKKIARE--ILGGEPPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESL 303 (510)
T ss_pred HHHHHHcCCCEEeeCcccCcchHHHHHHHHHH--HcCCCCCee-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHH
Confidence 135666677899987 66666655541 478754322 111 11 35999999999999998888777888
Q ss_pred hh
Q psy15414 490 QV 491 (1458)
Q Consensus 490 ~~ 491 (1458)
+.
T Consensus 304 R~ 305 (510)
T PRK00750 304 RL 305 (510)
T ss_pred HH
Confidence 83
No 171
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.86 E-value=4e-05 Score=102.63 Aligned_cols=131 Identities=19% Similarity=0.271 Sum_probs=96.6
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHH-hchhcCcCCCCCccHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAH-LQDKFPDYLTKSPPIADL 1308 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~-~~~~~p~~~~~~~~i~~~ 1308 (1458)
+++..+=..-+|+||+||+||+++-++.|+++|..+..||+|.--.--.-+|--|+.-+.. +...
T Consensus 48 ~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~-------------- 113 (912)
T PRK05743 48 KPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKK-------------- 113 (912)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCc--------------
Confidence 4456666677899999999999999999999999999999998877777778777766543 2110
Q ss_pred HHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcc--ccCeeEeccccchhHHHHHHHHH
Q psy15414 1309 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD--RLNVTLTERGESFYQKHMEQLVP 1386 (1458)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv--~~d~~f~esges~~~~~v~~~~~ 1386 (1458)
...++.+ .|++...+ -...+.+.++++++.+|+ +||..|.-.. ..|...+..++.
T Consensus 114 -------~~~~~~~-~f~~~c~~--------------~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~-~~~~~~v~~~f~ 170 (912)
T PRK05743 114 -------GKKLSAA-EFRKKCRE--------------YALEQVDIQREDFKRLGVLGDWDNPYLTMD-FKYEANIIRALG 170 (912)
T ss_pred -------cccCCHH-HHHHHHHH--------------HHHHHHHHHHHHHHHhCCcccCCCCcCCCC-HHHHHHHHHHHH
Confidence 0112222 23322211 224466789999999999 8988666541 456679999999
Q ss_pred HHHHCCCeecc
Q psy15414 1387 YLEKKGLLELD 1397 (1458)
Q Consensus 1387 ~L~~~G~~Ye~ 1397 (1458)
+|.++|++|..
T Consensus 171 ~l~~~Gliy~~ 181 (912)
T PRK05743 171 KMAKKGYLYKG 181 (912)
T ss_pred HHHHCCCEEec
Confidence 99999999994
No 172
>PLN02882 aminoacyl-tRNA ligase
Probab=97.83 E-value=3.4e-05 Score=104.86 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=94.7
Q ss_pred EEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHH-HhchhcCcCCCCCccHHHHHHH
Q psy15414 1233 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA-HLQDKFPDYLTKSPPIADLQAF 1311 (1458)
Q Consensus 1233 v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~-~~~~~~p~~~~~~~~i~~~~~~ 1311 (1458)
..+=---|++||++|+||+++.++.|+++|..++.||+|.+-+--..+|-=|+..+. .+...- ...|.+
T Consensus 40 f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~------~~~i~~---- 109 (1159)
T PLN02882 40 YIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKR------RDDVLK---- 109 (1159)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCC------ccchhh----
Confidence 333334579999999999999999999999999999999999999899977776653 222110 011111
Q ss_pred HHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--cccCeeEeccccchhHHHHHHHHHHHH
Q psy15414 1312 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY--DRLNVTLTERGESFYQKHMEQLVPYLE 1389 (1458)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~g--v~~d~~f~esges~~~~~v~~~~~~L~ 1389 (1458)
+..+ .|.+.. +..+..+.+.++++++.+| +.||+.|.-.. ..|...+..++.+|-
T Consensus 110 -------~g~~-~f~~~c--------------~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d-~~~~~~v~~~f~~l~ 166 (1159)
T PLN02882 110 -------MGID-KYNEEC--------------RSIVTRYSKEWEKTVTRTGRWIDFENDYKTMD-PKFMESVWWVFKQLF 166 (1159)
T ss_pred -------cCHH-HHHHHH--------------HHHHHHHHHHHHHHHHHcCcEEECCCCcCcCC-HHHHHHHHHHHHHHH
Confidence 1111 122211 2234567789999999999 99998766551 467679999999999
Q ss_pred HCCCeecc
Q psy15414 1390 KKGLLELD 1397 (1458)
Q Consensus 1390 ~~G~~Ye~ 1397 (1458)
++|++|..
T Consensus 167 ~kGliyr~ 174 (1159)
T PLN02882 167 EKGLVYKG 174 (1159)
T ss_pred HCCCEEec
Confidence 99999983
No 173
>PLN02959 aminoacyl-tRNA ligase
Probab=97.81 E-value=9.2e-05 Score=100.41 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=56.4
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 664 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~ 664 (1458)
.+..+.+.=|+++|+|||||++|.++.|+++|+.+..||+|.......-.|..|...+..+
T Consensus 45 ~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~ 105 (1084)
T PLN02959 45 EKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKL 105 (1084)
T ss_pred CcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHH
Confidence 5678888889999999999999999999999999999999999999999999998776554
No 174
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=97.79 E-value=0.00017 Score=87.30 Aligned_cols=119 Identities=16% Similarity=0.060 Sum_probs=88.9
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+.+|.+=.+.|-|=++.|+||+|..++.|+++|.|+..||+|.---=+.|.|-.|..-|...
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~------------------ 95 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERD------------------ 95 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHc------------------
Confidence 33566644688888999999999999999999999999999987777777775555444321
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccc-cCeeEeccccchhHHHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR-LNVTLTERGESFYQKHMEQLVPYL 1388 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~-~d~~f~esges~~~~~v~~~~~~L 1388 (1458)
|. +..+ ..+.+.+..++|++.|++. +|.+..-+ +- .+.+.+.++.|
T Consensus 96 ------g~--t~~e----------------------la~~y~~~f~~d~~~Lni~~~d~~~RaT--e~-i~~ii~~i~~L 142 (411)
T TIGR03447 96 ------GV--DWRE----------------------LGTSQIDLFREDMEALRVLPPRDYIGAV--ES-IDEVIEMVEKL 142 (411)
T ss_pred ------CC--CHHH----------------------HHHHHHHHHHHHHHHcCCCCCCcccCCC--CC-HHHHHHHHHHH
Confidence 11 1111 1123456778999999975 78777755 22 35789999999
Q ss_pred HHCCCeeccCC
Q psy15414 1389 EKKGLLELDDG 1399 (1458)
Q Consensus 1389 ~~~G~~Ye~~g 1399 (1458)
.++|++|+.+|
T Consensus 143 ~~kG~aY~~~~ 153 (411)
T TIGR03447 143 LAAGAAYEVEG 153 (411)
T ss_pred HHCCCEEecCC
Confidence 99999999987
No 175
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=97.79 E-value=4.7e-05 Score=101.90 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=88.0
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+++..+-..-+|+||+||+||+++.++.|+++|..+..||+|..-.=-..+|-=++.- +.
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~--------------------ve 94 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMV--------------------VE 94 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHH--------------------HH
Confidence 4456666667899999999999999999999999999999997665555555211111 01
Q ss_pred HHHHHhCCC---CChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEeccccchhHHHHHHH
Q psy15414 1310 AFYKESKKR---FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGESFYQKHMEQL 1384 (1458)
Q Consensus 1310 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esges~~~~~v~~~ 1384 (1458)
+.+...|.. +.. +.|.+..++ -..++.+.|+++++.+|+.+| +.|.-.. ..|...|..+
T Consensus 95 ~~l~~~g~~~~~~~r-e~f~~~~~~--------------w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d-~~~~~~v~~~ 158 (874)
T PRK05729 95 RQLAAEGKSRHDLGR-EKFLEKVWE--------------WKEESGGTITNQLRRLGASCDWSRERFTMD-EGLSKAVREV 158 (874)
T ss_pred HHHHhcCCChHHCCH-HHHHHHHHH--------------HHHHHHHHHHHHHHHhCcceecCCCcccCC-HHHHHHHHHH
Confidence 111111210 111 123222221 235577899999999996665 4222221 3466699999
Q ss_pred HHHHHHCCCeeccCC
Q psy15414 1385 VPYLEKKGLLELDDG 1399 (1458)
Q Consensus 1385 ~~~L~~~G~~Ye~~g 1399 (1458)
+.+|.++|++|...-
T Consensus 159 F~~L~~~GlIyr~~~ 173 (874)
T PRK05729 159 FVRLYEKGLIYRGKR 173 (874)
T ss_pred HHHHHHCCCEeecCc
Confidence 999999999999543
No 176
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.74 E-value=5.1e-05 Score=93.96 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhccccC-eeEeccccchhHHHHHHHHHHHHHCCCeec
Q psy15414 1349 MICDVSRRDFQKIYDRLN-VTLTERGESFYQKHMEQLVPYLEKKGLLEL 1396 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d-~~f~esges~~~~~v~~~~~~L~~~G~~Ye 1396 (1458)
++.+.|.+||+|+|+.|| ..+.|| .++ +.+.+...+|.++|.+|.
T Consensus 50 e~~~~I~~dL~wLG~~~d~~~~~qS--~~~-~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 50 EYVESIKRDVEWLGFKWEGKIRYSS--DYF-DELYRYAEELIKKGLAYV 95 (522)
T ss_pred HHHHHHHHHHHHcCCCCCCCceEcc--ccH-HHHHHHHHHHHHcCCEEe
Confidence 466899999999999995 456777 554 556677799999999998
No 177
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.74 E-value=0.00014 Score=97.48 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=95.2
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHh-chhcCcCCCCCccHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL-QDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~-~~~~p~~~~~~~~i~~~~ 1309 (1458)
++..+=..-|+|+|+||+||+++-++.|+++|..+..||+|..-+=-..+|--|+.-+... ... . ...+..
T Consensus 36 ~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~--~----~~~~~~-- 107 (861)
T TIGR00392 36 PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGIS--G----KKEISS-- 107 (861)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcc--c----ccccch--
Confidence 3445545568999999999999999999999999999999999888888888777766421 110 0 000000
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcc--ccCeeEeccccchhHHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD--RLNVTLTERGESFYQKHMEQLVPY 1387 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv--~~d~~f~esges~~~~~v~~~~~~ 1387 (1458)
.+.+.|.+.... -...+.+.++++|+.+|+ +||+.|.-.. ..|...+..++.+
T Consensus 108 ----------~~~~~f~~~c~~--------------~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~-p~y~~~~~~~f~~ 162 (861)
T TIGR00392 108 ----------LEIEEFREKCRE--------------FALKQIEEQREQFQRLGVWGDWENPYKTMD-PSYEESQWWLFKE 162 (861)
T ss_pred ----------hhHHHHHHHHHH--------------HHHHHHHHHHHHHHHhCceecCCCCcCcCC-HHHHHHHHHHHHH
Confidence 011223332211 223467889999999999 7888666541 4676789999999
Q ss_pred HHHCCCeecc
Q psy15414 1388 LEKKGLLELD 1397 (1458)
Q Consensus 1388 L~~~G~~Ye~ 1397 (1458)
|.++|++|..
T Consensus 163 l~~~gliyr~ 172 (861)
T TIGR00392 163 AHEKGLLYRG 172 (861)
T ss_pred HHHCCCEeec
Confidence 9999999993
No 178
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.70 E-value=9e-05 Score=100.05 Aligned_cols=135 Identities=17% Similarity=0.133 Sum_probs=95.9
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHH-hchhcCcCCCCCccHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAH-LQDKFPDYLTKSPPIADL 1308 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~-~~~~~p~~~~~~~~i~~~ 1308 (1458)
+++..+=..-|||||.||+||+++.++.|+++|.-+..||+|.+-+--.-+|--++..+.. +...- -..|.+
T Consensus 40 ~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~------~~~i~~- 112 (975)
T PRK06039 40 GPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISG------KKDIEE- 112 (975)
T ss_pred CCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCccc------ccchhh-
Confidence 3445555567899999999999999999999999999999999999998889877776642 21100 001111
Q ss_pred HHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--cccCeeEeccccchhHHHHHHHHH
Q psy15414 1309 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY--DRLNVTLTERGESFYQKHMEQLVP 1386 (1458)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~g--v~~d~~f~esges~~~~~v~~~~~ 1386 (1458)
+.. +.|.+.... -+..+.+.+++.++.+| ++||+.|.-.. ..|...+..++.
T Consensus 113 ----------~g~-~~f~~~c~~--------------~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d-~~y~~~v~~~F~ 166 (975)
T PRK06039 113 ----------YGI-EKFNEKCRE--------------SVLRYTDEWEEYTERLGRWVDFDNPYKTLD-NEYMESVWWALK 166 (975)
T ss_pred ----------cCH-HHHHHHHHH--------------HHHHHHHHHHHHHHHhCceeecCCCcCcCC-HHHHHHHHHHHH
Confidence 111 223222211 23346688999999999 78887665442 356668999999
Q ss_pred HHHHCCCeecc
Q psy15414 1387 YLEKKGLLELD 1397 (1458)
Q Consensus 1387 ~L~~~G~~Ye~ 1397 (1458)
+|-++|++|..
T Consensus 167 ~l~~kGliyr~ 177 (975)
T PRK06039 167 QLYDKGLLYKG 177 (975)
T ss_pred HHHHCCCEEec
Confidence 99999999993
No 179
>KOG0433|consensus
Probab=97.69 E-value=0.00088 Score=83.16 Aligned_cols=147 Identities=11% Similarity=0.130 Sum_probs=88.7
Q ss_pred EEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCcc
Q psy15414 850 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDY 929 (1458)
Q Consensus 850 ~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~ 929 (1458)
..+-+|++++.+|.|||||.||||+|+.+++.-+ +. -+.|.+.+||...+.....++
T Consensus 599 ~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~-----------k~------------payGaD~LR~WVA~~~~t~d~ 655 (937)
T KOG0433|consen 599 KVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSL-----------KQ------------PAYGADGLRFWVAGSENTGES 655 (937)
T ss_pred heeeeeeEecCCccchhhcccCcCCHHHHhCCcc-----------cC------------CCccccceeeeeecccccCce
Confidence 3445566899999999999999999999988621 11 156788899999877777777
Q ss_pred ccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy15414 930 VFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH 1009 (1458)
Q Consensus 930 ~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~ 1009 (1458)
.....-+.+.. +.---+..+..=+.+-+.........+|- ..+ .--++-++..+..|...+.+.+++|++.+
T Consensus 656 ~iGp~il~qv~-e~l~K~R~T~RfllGnl~d~~~~~~~~p~------~dl-~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~k 727 (937)
T KOG0433|consen 656 KIGPKILDQVD-EKLIKFRNTFRFLLGNLQDFDGKQVKFPL------KDL-RYIDQYMLQQLDAIVKRIIELYNDYKFRK 727 (937)
T ss_pred ecCHHHHHHHH-HHHHHHHhHHHHHhhcccccCCccccccc------hhh-hhhhHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 77665544431 11111111110011111111111011110 111 11256678899999999999999999999
Q ss_pred HHHHHHH-HHHHHHhhhhh
Q psy15414 1010 LCEYLYD-ISTAFSEFYDN 1027 (1458)
Q Consensus 1010 l~~yL~~-LA~~fN~fy~~ 1027 (1458)
++.-|.. +...++.||=+
T Consensus 728 Vv~~lq~F~~~~lSa~Yfd 746 (937)
T KOG0433|consen 728 VVNDLQQFLQRNLSAFYFD 746 (937)
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 8876644 44555666543
No 180
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00024 Score=91.68 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=89.8
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 1310 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~ 1310 (1458)
....|--.-+|+||.||||||-+..+-|+|+|.-|++||+|.=-..-..||- |..... .+
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGI-----aTq~~V---------------Ek 92 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI-----ATQVVV---------------EK 92 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCc-----hHHHHH---------------HH
Confidence 4477778889999999999999999999999999999999998888888882 221110 11
Q ss_pred HHHHhCC-CCC-hHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--ee-EeccccchhHHHHHHHH
Q psy15414 1311 FYKESKK-RFD-EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VT-LTERGESFYQKHMEQLV 1385 (1458)
Q Consensus 1311 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~-f~esges~~~~~v~~~~ 1385 (1458)
.+.+.|. +.+ .-|.|-+..+++ ..+.-+.|++.++.+|+..| +. |.=+ .-+...|++++
T Consensus 93 ~l~~~g~~r~d~gRe~Fl~~~weW--------------k~e~~~~I~~Q~~rLG~S~DWsrE~fTmD--~~~s~av~~~F 156 (877)
T COG0525 93 QLAAEGITRHDLGREEFLKKCWEW--------------KEESGGTIREQLRRLGVSVDWSRERFTMD--PGLSRAVQEAF 156 (877)
T ss_pred HHHHcCCCccccCHHHHHHHHHHH--------------HHHHHHHHHHHHHHhCCCcccccccccCC--HHHHHHHHHHH
Confidence 1111122 111 123343333332 12355789999999998776 32 3322 23345899999
Q ss_pred HHHHHCCCeec
Q psy15414 1386 PYLEKKGLLEL 1396 (1458)
Q Consensus 1386 ~~L~~~G~~Ye 1396 (1458)
-+|-++|++|.
T Consensus 157 v~Ly~~GlIYr 167 (877)
T COG0525 157 VRLYEKGLIYR 167 (877)
T ss_pred HHHHHCCceee
Confidence 99999999998
No 181
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=97.65 E-value=0.00057 Score=86.35 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=90.5
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+.+|.+=.+-+.|=.+.|+||+|..++.|+|+|.|+..||+|+---=+.|-|-.|..-|...
T Consensus 246 ~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~------------------ 307 (699)
T PRK14535 246 PENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAEN------------------ 307 (699)
T ss_pred CCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHc------------------
Confidence 34566633467777899999999999999999999999999987777777775554433321
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLE 1389 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~ 1389 (1458)
|. +..+ ..+.+.+...+|++.|++..+..+.-. +.+.+.+.+.++.|.
T Consensus 308 ------G~--sp~e----------------------la~~y~~~F~~d~~~LnI~~p~~~pra--TeHI~~ii~lI~~Li 355 (699)
T PRK14535 308 ------GE--TIGE----------------------LTARFIQAMHEDADALGVLRPDIEPKA--TENIPQMIAMIETLI 355 (699)
T ss_pred ------CC--CHHH----------------------HHHHHHHHHHHHHHHcCCCCCcEeeCc--cchHHHHHHHHHHHH
Confidence 11 1111 123355678899999999998754444 566678999999999
Q ss_pred HCCCeecc-CCCcc
Q psy15414 1390 KKGLLELD-DGRKI 1402 (1458)
Q Consensus 1390 ~~G~~Ye~-~ga~~ 1402 (1458)
++|++|+. +|..|
T Consensus 356 dkG~AYe~~~gsVY 369 (699)
T PRK14535 356 QNGKAYPAANGDVY 369 (699)
T ss_pred HCCCEEEeCCCCEE
Confidence 99999986 67653
No 182
>PLN02859 glutamine-tRNA ligase
Probab=97.62 E-value=0.00012 Score=93.67 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=66.9
Q ss_pred eEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHH
Q psy15414 1232 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 1311 (1458)
Q Consensus 1232 ~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~ 1311 (1458)
+|..=|. ++|||+||+||+|.|.+--..|+-. |.. || ||.
T Consensus 264 ~V~tRFa-PsPtG~LHiGharaallN~~~Ar~~---~G~----~~--------------LRi------------------ 303 (788)
T PLN02859 264 KVYTRFP-PEPNGYLHIGHAKAMFVDFGLAKER---GGC----CY--------------LRF------------------ 303 (788)
T ss_pred ceEEEeC-CCCCCcccHHHHHHHHHHHHHHHHh---CCE----EE--------------EEe------------------
Confidence 5777775 8999999999999999888777742 211 11 221
Q ss_pred HHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHC
Q psy15414 1312 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 1391 (1458)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~ 1391 (1458)
+|.|+.+ ....+.+.|.+||+|+|+.||..+.+| .+++..|+. ..+|.++
T Consensus 304 -------------------------eDTdp~r--~~~e~~~~I~edL~WLG~~~d~~~~qS--d~f~~~Y~~-A~~Li~~ 353 (788)
T PLN02859 304 -------------------------DDTNPEA--EKKEYIDHIEEIVEWMGWEPFKITYTS--DYFQELYEL-AVELIRR 353 (788)
T ss_pred -------------------------cCCCCCc--cchHHHHHHHHHHHHcCCCCCCccccc--HhHHHHHHH-HHHHHHc
Confidence 1111111 112466899999999999999888888 666557765 4569999
Q ss_pred CCeec
Q psy15414 1392 GLLEL 1396 (1458)
Q Consensus 1392 G~~Ye 1396 (1458)
|++|.
T Consensus 354 G~AY~ 358 (788)
T PLN02859 354 GHAYV 358 (788)
T ss_pred CCeEe
Confidence 99998
No 183
>KOG0435|consensus
Probab=97.57 E-value=9.1e-05 Score=90.70 Aligned_cols=107 Identities=21% Similarity=0.322 Sum_probs=79.3
Q ss_pred CccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhcc
Q psy15414 613 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 692 (1458)
Q Consensus 613 pNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~ 692 (1458)
|.|.|.|||||.|-..|.|+|+|+.+.+||+|+.=+.-+-+|..-.--
T Consensus 66 PYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENA-------------------------------- 113 (876)
T KOG0435|consen 66 PYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENA-------------------------------- 113 (876)
T ss_pred CCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhH--------------------------------
Confidence 899999999999999999999999999999999877766666432110
Q ss_pred CCcHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc-----ccccchhHHHHHHHHHHcCC
Q psy15414 693 DEDEIFKKRAYQCVVALQRF-DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQLVPYLEKKGL 766 (1458)
Q Consensus 693 ~~~~~~~~~a~~~~~~le~g-d~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g-----eS~~~~~v~~vi~~L~~kG~ 766 (1458)
| .|.| +| +.|. .-.++.+++.+.+||+.|++.. +..|-...+=++-+|-++|+
T Consensus 114 ---------A------iergv~P---~sWT---~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GL 172 (876)
T KOG0435|consen 114 ---------A------IERGVHP---ASWT---INNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGL 172 (876)
T ss_pred ---------H------HhcCCCc---hhhh---HHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhh
Confidence 0 1111 11 1131 2346788999999999998732 34566778888999999999
Q ss_pred eEeeCC
Q psy15414 767 LELDDG 772 (1458)
Q Consensus 767 ~ye~dG 772 (1458)
+|+.+-
T Consensus 173 AYq~Ea 178 (876)
T KOG0435|consen 173 AYQAEA 178 (876)
T ss_pred hhcccc
Confidence 997653
No 184
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=97.48 E-value=0.00067 Score=87.39 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=92.9
Q ss_pred CCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHH-HcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHH
Q psy15414 1228 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLE-YLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 1306 (1458)
Q Consensus 1228 ~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~-~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~ 1306 (1458)
-.+.+|.+=.+-+-+=++.|+||+|..++.|+|+|+|+ +.||+|.---=|-|-|-.|-.-|..-
T Consensus 56 ~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~--------------- 120 (651)
T PTZ00399 56 QNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREE--------------- 120 (651)
T ss_pred CCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHh---------------
Confidence 33456666334566668899999999999999999999 99999997777778775554433211
Q ss_pred HHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHH
Q psy15414 1307 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVP 1386 (1458)
Q Consensus 1307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~ 1386 (1458)
|- + +.....+.+.+...+|++.++|..+..+.-. +.|...+.+.++
T Consensus 121 ---------g~--~---------------------~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~--tehi~~ii~~i~ 166 (651)
T PTZ00399 121 ---------KL--S---------------------IFLELARKWEKEFFEDMKALNVRPPDVITRV--SEYVPEIVDFIQ 166 (651)
T ss_pred ---------CC--C---------------------cHHHHHHHHHHHHHHHHHHcCCCCCccccCc--CccHHHHHHHHH
Confidence 11 1 0011123455678899999999998777666 666678899999
Q ss_pred HHHHCCCeeccCCCc
Q psy15414 1387 YLEKKGLLELDDGRK 1401 (1458)
Q Consensus 1387 ~L~~~G~~Ye~~ga~ 1401 (1458)
.|.++|++|+.+|..
T Consensus 167 ~Li~~G~aY~~~gsv 181 (651)
T PTZ00399 167 KIIDNGFAYESNGSV 181 (651)
T ss_pred HHHHCCCEEEECCeE
Confidence 999999999999987
No 185
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=97.46 E-value=0.0046 Score=71.73 Aligned_cols=228 Identities=20% Similarity=0.211 Sum_probs=121.9
Q ss_pred CcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHH
Q psy15414 213 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 292 (1458)
Q Consensus 213 ~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~ 292 (1458)
+++|-+=-+.|-+=-..||||+|+.|.=|.|.|.|++.||+|.-+-=|-|.- .
T Consensus 6 ~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiD---------------------------D 58 (300)
T PF01406_consen 6 PGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDID---------------------------D 58 (300)
T ss_dssp TTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SS---------------------------H
T ss_pred CCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccc---------------------------h
Confidence 3467776777888899999999999999999999999999998766555530 0
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc--cchhhhhhhHHHHHHH
Q psy15414 293 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPY 370 (1458)
Q Consensus 293 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~--~gEs~y~~~~~~vv~~ 370 (1458)
++. ++|+ +.|- -|..+.+.-.+.|.+..++|||.-.. ---|-+-+.|-+.++.
T Consensus 59 Kii--------------~~A~------~~g~-----~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~ 113 (300)
T PF01406_consen 59 KII--------------KRAR------EEGV-----SPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIELIEK 113 (300)
T ss_dssp HHH--------------HHHH------HTTS------HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHHHHH
T ss_pred HHH--------------HHHH------hccC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHHHHH
Confidence 111 1121 1221 25666777777888888999986421 1124455668889999
Q ss_pred HHHCCCeeecC-CCeEEecCC---------------------------CCCCceEEEecC--Cccccchh----------
Q psy15414 371 LEKKGLLELDD-GRKIMWGED---------------------------RGSIPMTIVKSD--GGFTYDTS---------- 410 (1458)
Q Consensus 371 L~~kg~~~~~d-Ga~~~~~~~---------------------------~~~~~~vl~kSD--G~~tY~t~---------- 410 (1458)
|.++|++|+.+ |.+...+.. +++.+.+|-|.- |.+.+.|+
T Consensus 114 Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHi 193 (300)
T PF01406_consen 114 LIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHI 193 (300)
T ss_dssp HHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHH
T ss_pred HHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCceee
Confidence 99999999988 776532210 112245554432 22222221
Q ss_pred hHHHHHHHhhhcCCCEEEEecCCchHHHH-HHHHHHHHHHcCCCCCCCccccccc----cccCCCcccccCHHHHHHHHH
Q psy15414 411 DLAAIRQRIEEEKADWIVYVTDHRSYHQV-LQAIAEEEKKQGISSSSSSQTKGTA----KKMNVPVRDRMSVRDYLSDVF 485 (1458)
Q Consensus 411 DiA~~~~r~~~~~~d~iIyv~D~~~~~~~-~~a~~~a~~~~g~~~~~~~~~~G~~----~kmskr~gt~~~l~~~L~ell 485 (1458)
--++...++--..+|-=-=++|..--|+- --|..+++ .|-+....-++.|.. .||||..||+.++.+.++.--
T Consensus 194 ECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~--~g~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~ 271 (300)
T PF01406_consen 194 ECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAA--TGKPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYS 271 (300)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHH--HSS-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-
T ss_pred ehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHh--hCchHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCC
Confidence 11333344322233322235787532221 11222221 242111112345543 499999999999999888766
Q ss_pred hhhhhhccc
Q psy15414 486 THAVQVAFP 494 (1458)
Q Consensus 486 ~dAi~~a~~ 494 (1458)
-+++|.++.
T Consensus 272 ~~~lR~~~l 280 (300)
T PF01406_consen 272 PDALRLFLL 280 (300)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 677777653
No 186
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=97.44 E-value=0.00028 Score=94.55 Aligned_cols=124 Identities=26% Similarity=0.346 Sum_probs=85.3
Q ss_pred cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhccCCcHHH
Q psy15414 619 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIF 698 (1458)
Q Consensus 619 lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~ 698 (1458)
+||||+|+.++.|+++|+.+..||+|.+....+-+|..+...+..+.. .+ ...+..+.++|. . ...++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~--~~----~~~~~~~~~~~g-----i-~~~~i 68 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR--GD----PETIELYKSLYG-----I-PEEEL 68 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhc--cc----hhHHHHHHHHcC-----C-CHHHH
Confidence 799999999999999999999999999999999999998765544321 00 000110011100 0 11111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc-----ccccchhHHHHHHHHHHcCCeEee
Q psy15414 699 KKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQLVPYLEKKGLLELD 770 (1458)
Q Consensus 699 ~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g-----eS~~~~~v~~vi~~L~~kG~~ye~ 770 (1458)
.+ . +++ +.+++.+...+.+.+++||++++++. +..|...+..++.+|.++|++|..
T Consensus 69 ~~--------f--~~~------~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg 129 (897)
T PRK12300 69 EK--------F--KDP------EYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKG 129 (897)
T ss_pred HH--------h--cCH------HHHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecC
Confidence 11 1 122 24567778889999999999988642 234667889999999999999964
No 187
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0043 Score=75.55 Aligned_cols=119 Identities=24% Similarity=0.330 Sum_probs=83.0
Q ss_pred EEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHH
Q psy15414 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 294 (1458)
Q Consensus 215 ~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~ 294 (1458)
+|-+=-+.|-+=--.||||+|+.|.-|.|.|.|++.||.|.-+--|-| +.
T Consensus 22 ~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTD----------------------------ID-- 71 (464)
T COG0215 22 KVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITD----------------------------ID-- 71 (464)
T ss_pred eEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEecccc----------------------------cc--
Confidence 366666778788889999999999999999999999997543322222 21
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcce-eccc-chhhhhhhHHHHHHHHH
Q psy15414 295 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTER-GESFYQKHMEQLVPYLE 372 (1458)
Q Consensus 295 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~-f~~~-gEs~y~~~~~~vv~~L~ 372 (1458)
|+.+ ++|+ |.|- -|+.+.+.-.++|.+-++.|||. -+.. .-+-|-+.|-+.|+.|.
T Consensus 72 ----------DKIi-~rA~------~~g~-----~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~Li 129 (464)
T COG0215 72 ----------DKII-NRAR------EEGL-----SIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLI 129 (464)
T ss_pred ----------HHHH-HHHH------HhCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHH
Confidence 1111 2222 2221 36777777888888889999994 2321 22445566788999999
Q ss_pred HCCCeeec-CCCeE
Q psy15414 373 KKGLLELD-DGRKI 385 (1458)
Q Consensus 373 ~kg~~~~~-dGa~~ 385 (1458)
++|++|+. +|.+.
T Consensus 130 ekG~AY~~~~G~VY 143 (464)
T COG0215 130 EKGYAYVADDGDVY 143 (464)
T ss_pred HCCceEEecCCcEE
Confidence 99999998 67654
No 188
>KOG1149|consensus
Probab=97.15 E-value=0.00057 Score=80.50 Aligned_cols=42 Identities=7% Similarity=-0.042 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccccCe-e--------EeccccchhHHHHHHHHHHHHHCCCeec
Q psy15414 1352 DVSRRDFQKIYDRLNV-T--------LTERGESFYQKHMEQLVPYLEKKGLLEL 1396 (1458)
Q Consensus 1352 ~~i~~dL~~~gv~~d~-~--------f~esges~~~~~v~~~~~~L~~~G~~Ye 1396 (1458)
..|-+||.|+|+.||. . |.|| +| ...|.++.+.|.+.|++|.
T Consensus 86 e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS--~R-~eiY~kyae~Ll~sG~AYr 136 (524)
T KOG1149|consen 86 EAIYEDLKWANLDWDEGPGVGGPFGPYEQS--ER-LEIYKKYAEKLLESGHAYR 136 (524)
T ss_pred HHHHHHHHhcCCCcccCCCcCCCCCchhhH--HH-HHHHHHHHHHHHhcCCeeE
Confidence 4788999999999995 2 6666 55 2578999999999999998
No 189
>KOG0432|consensus
Probab=96.61 E-value=0.0062 Score=77.50 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=92.3
Q ss_pred ecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHHHHHHhC
Q psy15414 1237 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 1316 (1458)
Q Consensus 1237 ~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~ 1316 (1458)
..-+|.||.||+||+-..++=|++||.-++.||.|.=-==..-||- ..+++.. +.+...+
T Consensus 81 ~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGI----ATQ~VVE----------------K~l~~~~ 140 (995)
T KOG0432|consen 81 LPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGI----ATQVVVE----------------KQLAREG 140 (995)
T ss_pred cCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccch----hHHHHHH----------------HHHHHhc
Confidence 4567999999999999999999999999999996643222233331 1111111 1122222
Q ss_pred C----CCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEeccccchhHHHHHHHHHHHHH
Q psy15414 1317 K----RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGESFYQKHMEQLVPYLEK 1390 (1458)
Q Consensus 1317 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esges~~~~~v~~~~~~L~~ 1390 (1458)
. .+..+ .|-+.-+.+ .+++=..|.++|+.+|-.+| +.+.-.++.+ ...|.+++-+|-+
T Consensus 141 ~~~Rh~lgRe-~F~~~vw~W--------------k~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~-s~AV~eAFvrL~e 204 (995)
T KOG0432|consen 141 GKTRHDLGRE-EFLKEVWEW--------------KEEYGGRIYNQLKRLGASLDWDREAFTMDPKL-SRAVTEAFVRLHE 204 (995)
T ss_pred CcchhhcCHH-HHHHHHHHH--------------HHHhCccHHHHHHHhcCcccccHhhcccCHHH-HHHHHHHHHHHHh
Confidence 1 11122 232222221 11223589999999997664 4333222222 3489999999999
Q ss_pred CCCeeccCCCc-c---------ccc-ccCCCCCceEEecCCccc--cc--hhhhHHHHh
Q psy15414 1391 KGLLELDDGRK-I---------MWG-EDRGSIPMTIVKSDGGFT--YD--TSDLAAIRQ 1434 (1458)
Q Consensus 1391 ~G~~Ye~~ga~-~---------~~g-ddkdr~~~vl~rsdG~~t--Y~--~~Diayh~~ 1434 (1458)
+|.+|....=. | +-. |-++.+..++..-+|.-+ =| ...+||+..
T Consensus 205 eglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~ 263 (995)
T KOG0432|consen 205 EGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVE 263 (995)
T ss_pred cCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEecc
Confidence 99999954332 2 111 223444447777776221 11 125667654
No 190
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0074 Score=79.33 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=89.8
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
+.++.=.-|..+|-+||||+-|-||=|++.|.....||+|.++..-+=+|..|..-+..- .+. . +..+. ++
T Consensus 50 ~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~---lg~--~-k~~i~---~~ 120 (933)
T COG0060 50 KFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKK---LGI--G-KKDIE---SF 120 (933)
T ss_pred cEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHH---hCC--C-cchhh---hc
Confidence 344444678999999999999999999999999999999999999888898887433211 110 0 00000 00
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc--cc---ccchhHHHHHH
Q psy15414 685 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG--ES---FYQKHMEQLVP 759 (1458)
Q Consensus 685 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g--eS---~~~~~v~~vi~ 759 (1458)
.-++|.+.|++. +...++..++.|.|||++.++.. -+ .|...+-.++.
T Consensus 121 ---------~~~efr~~Cr~~------------------a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~ 173 (933)
T COG0060 121 ---------GVEEFREKCREF------------------ALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFK 173 (933)
T ss_pred ---------CHHHHHHHHHHH------------------HHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHH
Confidence 112455555543 44456677888999999765421 12 24566778999
Q ss_pred HHHHcCCeEee
Q psy15414 760 YLEKKGLLELD 770 (1458)
Q Consensus 760 ~L~~kG~~ye~ 770 (1458)
+|.++|++|+.
T Consensus 174 ~~~~kGllyrg 184 (933)
T COG0060 174 ELYEKGLLYRG 184 (933)
T ss_pred HHHHCCCeecC
Confidence 99999999963
No 191
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=96.39 E-value=0.012 Score=70.24 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=42.9
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcC------CCCCCcceEEEEEe-EEEecCCCcccccccCC-ccchHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAG------ILNPNKTRMDFVGF-GVVLGEDRKKFKTRSGD-TVKLSE 877 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG------~~~~~~~~~~H~~f-g~V~~~~G~KMSKR~Gn-vI~l~D 877 (1458)
++|.+ .+|.||..|+.--..+++.+| +..| ...|..+ -.+.+.+|+|||||.+| .|.+.|
T Consensus 139 ~~d~v--pvG~DQ~~h~elaRdia~r~n~~~~~~f~~P---~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 139 QADLV--PVGIDQDQHLELTRDLAERFNKKFKNFFPKP---ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred CCCee--ecccccHHHHHHHHHHHHHhhhhcCcccCCC---hhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 55644 499999999999999999988 3333 3345444 23445566899999997 887654
No 192
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=96.20 E-value=0.048 Score=55.41 Aligned_cols=116 Identities=14% Similarity=0.114 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q psy15414 948 LYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDN 1027 (1458)
Q Consensus 948 qYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~ 1027 (1458)
++...|+.++..+..... +|. ...+ .+.+..++..+.+....+.+++++++++.++..+++++...|.|++.
T Consensus 10 gnll~r~~~~~~~~~~~~--~~~-----~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~~ 81 (129)
T cd07957 10 GNLVNRTLNMASKYFGGV--VPE-----FGGL-TEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDE 81 (129)
T ss_pred hhHHHHHHHHHHHHcCCc--CCC-----CCCC-CcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcc
Confidence 334479988887753221 111 1112 24466788999999999999999999999999999999999999986
Q ss_pred cc-c-cccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhh
Q psy15414 1028 CY-C-IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAK 1092 (1458)
Q Consensus 1028 ~~-v-L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~ 1092 (1458)
.+ + +.++.+ ..+ +..+..++.++++.+.+ .|+|++|...+.+.+
T Consensus 82 ~kpw~~~~~~~-------~~~---~~~~l~~~~~~l~~~~~-----------lL~P~~P~~aeei~~ 127 (129)
T cd07957 82 TAPWKLAKEED-------PER---LATVLYVLLELLRILAI-----------LLSPFMPETAEKILD 127 (129)
T ss_pred CCCHHHHccCC-------HHH---HHHHHHHHHHHHHHHHH-----------HhcCCCChHHHHHHH
Confidence 64 3 222100 111 14455555666666666 778888888777654
No 193
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.94 E-value=0.022 Score=69.88 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=42.2
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 818 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
|=+.|.||..|+..-..+++.+|...+ ...+.+ .+.+.+|.|||||.||.|+++|
T Consensus 189 iq~gG~DQ~~ni~~grdl~~r~~~~~~---~~lt~P--lL~g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 189 LQIGGTDQWGNILMGRDLQRKLEGEEQ---FGLTMP--LLEGADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCCCCc---eEeccC--CccCCCCCccCCCCCCceeccC
Confidence 555899999999999999999886332 222333 3567789999999999999854
No 194
>KOG0434|consensus
Probab=95.82 E-value=0.088 Score=65.46 Aligned_cols=138 Identities=12% Similarity=0.052 Sum_probs=83.3
Q ss_pred ceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecC--C
Q psy15414 847 TRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH--N 924 (1458)
Q Consensus 847 ~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~--~ 924 (1458)
.+++.. |.|+-.||+|||||+-|.-+|..++++++. +|+|.+++.. .
T Consensus 586 kNvIvn--GlVLAeDG~KMSKrlkNYPdP~~iinkYGA-----------------------------DalRlYLInSPVv 634 (1070)
T KOG0434|consen 586 KNVIVN--GLVLAEDGKKMSKRLKNYPDPSLIINKYGA-----------------------------DALRLYLINSPVV 634 (1070)
T ss_pred hheeEe--eeEEecccHHHhhhhhcCCCHHHHHHhhcc-----------------------------hheeeeeecCccc
Confidence 344444 558889999999999999999999999862 4689888874 4
Q ss_pred CCCccccchhhHHhhhc--------CcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHH
Q psy15414 925 RNLDYVFSFDKMLDDRG--------NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 996 (1458)
Q Consensus 925 ~~~d~~Fd~d~~l~~n~--------n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~ 996 (1458)
+..++.|..+...+.-. ....|+|++. | +.+-.+.... +. +...-.+--++=++.....+..
T Consensus 635 raE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~-~----~~~~~g~~f~-~~----~~~~S~NvmDrWI~a~~qslv~ 704 (1070)
T KOG0434|consen 635 RAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAA-L----LKKETGKDFV-FD----DSVTSSNVMDRWILASTQSLVG 704 (1070)
T ss_pred cccccccchhhHHHHHHhhhhhhhHHHHHHHHHHH-H----hccccCCccc-cc----cccccchhHHHHHHHHHHHHHH
Confidence 46788899887766211 1244565542 2 2332211100 00 0000001123334555566677
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q psy15414 997 VLMLVTRDLCLHHLCEYLYDISTAFSEFY 1025 (1458)
Q Consensus 997 ~v~~a~~~~~p~~l~~yL~~LA~~fN~fy 1025 (1458)
-+++-|..|+...++--|.........+|
T Consensus 705 fv~~eM~~YrLytVvp~llkfiD~LTNwY 733 (1070)
T KOG0434|consen 705 FVREEMDQYRLYTVVPRLLKFIDELTNWY 733 (1070)
T ss_pred HHHHHHHheehhhhHHHHHHHHHHhhhhh
Confidence 78888888887666666665555554444
No 195
>KOG0433|consensus
Probab=95.04 E-value=0.14 Score=64.45 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=81.2
Q ss_pred cCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhccCC
Q psy15414 615 IAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 694 (1458)
Q Consensus 615 p~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~ 694 (1458)
.+|.+|+||++|-|+-|++-|+.-..|..|..+-..+=.|-.+.. +..+... .+..+. + +
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs-~kalssl-~~~~~~---~---------------s 125 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIES-TKALSSL-TESEGS---R---------------T 125 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHH-HHHhhhh-hhcccc---C---------------C
Confidence 679999999999999999999999999999988888888876653 1111100 000000 0 0
Q ss_pred cHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEecc-----cccccchhHHHHHHHHHHcCCeEe
Q psy15414 695 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQLVPYLEKKGLLEL 769 (1458)
Q Consensus 695 ~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~-----geS~~~~~v~~vi~~L~~kG~~ye 769 (1458)
--++ ++.-+.|++..++...+.|.++||.-+|. -...|.....+++..|.++|++|.
T Consensus 126 ~lei------------------R~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR 187 (937)
T KOG0433|consen 126 PLEI------------------RAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYR 187 (937)
T ss_pred cHHH------------------HHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceec
Confidence 0112 22233466667888889999999965542 112355556789999999999997
Q ss_pred eCCc
Q psy15414 770 DDGR 773 (1458)
Q Consensus 770 ~dGa 773 (1458)
+..-
T Consensus 188 ~~KP 191 (937)
T KOG0433|consen 188 SFKP 191 (937)
T ss_pred cCCc
Confidence 6443
No 196
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=94.74 E-value=0.14 Score=52.94 Aligned_cols=90 Identities=6% Similarity=-0.003 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHhhhhhcc-ccccccccccccchhHHHHHHHHHHHHHH
Q psy15414 982 EKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST--AFSEFYDNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVMK 1058 (1458)
Q Consensus 982 ~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~--~fN~fy~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL~ 1058 (1458)
+.+..++..+..+...+..++++++++.++..+++++. ..|.|++.+. +..+. + ..+ +.++..++.
T Consensus 42 ~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~~~N~Yi~~~~pW~~~~-~-------~~~---~~~~~~~~~ 110 (135)
T cd07962 42 LADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLELVKPRLYGE-D-------EEE---KKAARATLY 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHhhHHHcCC-C-------hHH---HHHHHHHHH
Confidence 45677889999999999999999999999999999987 7999999874 42121 1 112 255666777
Q ss_pred HHhhhcccccchhhHHhhccCCcchhhhHHHhhhh
Q psy15414 1059 KCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKK 1093 (1458)
Q Consensus 1059 ~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~ 1093 (1458)
++++.+.+ .|+|++|...+.+...
T Consensus 111 ~~l~~l~~-----------lL~P~~P~~ae~l~~~ 134 (135)
T cd07962 111 YVLETILR-----------LLHPFMPFITEELWQR 134 (135)
T ss_pred HHHHHHHH-----------HHCccccHHHHHHHhc
Confidence 78888877 8899999988887654
No 197
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=94.57 E-value=0.29 Score=48.72 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc
Q psy15414 950 AYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1029 (1458)
Q Consensus 950 a~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~ 1029 (1458)
-..|+.++.++..... .|.. ++..+ .+.++.++..+.+..+.+.+++++++++.++..+++++..+|+|++...
T Consensus 12 ~l~R~~~~~~~~~~~~--~~~~---~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~~ 85 (117)
T cd07958 12 FLNRVWRLVTELAEAL--AAPA---AAAEL-SEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKDA 85 (117)
T ss_pred HHHHHHHHHHHHHhhc--cccc---ccccc-chhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcccc
Confidence 3478888888752211 1110 01122 2456778899999999999999999999999999999999999976431
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhh
Q psy15414 1030 CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAK 1092 (1458)
Q Consensus 1030 vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~ 1092 (1458)
. +..++.++++.+.+ .|+|++|...+.+..
T Consensus 86 --------------p--------~~~~~~~~l~~~~~-----------lL~P~~P~~aeei~~ 115 (117)
T cd07958 86 --------------Q--------HAAVLREALETLVL-----------LLAPFAPHIAEELWE 115 (117)
T ss_pred --------------c--------hHHHHHHHHHHHHH-----------HHcccchHHHHHHHh
Confidence 0 23445555666665 778888887777654
No 198
>KOG0435|consensus
Probab=94.36 E-value=0.016 Score=71.89 Aligned_cols=34 Identities=29% Similarity=0.608 Sum_probs=32.5
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHcCCcEEE
Q psy15414 1240 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 1273 (1458)
Q Consensus 1240 anptgplh~gh~r~~~~gd~~~~~l~~~g~~v~r 1273 (1458)
+-|.|-|||||.|...+-|+|||..+..||+|.-
T Consensus 66 PYPSG~LHiGHvRVYTIsD~laRf~rm~GynVih 99 (876)
T KOG0435|consen 66 PYPSGALHIGHVRVYTISDILARFYRMKGYNVIH 99 (876)
T ss_pred CCCCCcccccceEEEEehHHHHHHHHhcCceeec
Confidence 7999999999999999999999999999999953
No 199
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=93.88 E-value=0.73 Score=45.48 Aligned_cols=76 Identities=16% Similarity=0.074 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q psy15414 947 LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1026 (1458)
Q Consensus 947 lqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~ 1026 (1458)
.++.+.|+++++.++.... .+.. +.... .+.+..++..+..+.+.+.+++++++++.++..+++++...|.|++
T Consensus 10 ~~n~~~r~~~~~~~~~~~~--~~~~---~~~~~-~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~ 83 (117)
T cd07375 10 FLNRLYRLLSFFRKALGGT--QPKW---DNELL-EEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLD 83 (117)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCCc---Chhhc-CHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHH
Confidence 4566789998877653221 1100 00111 3557889999999999999999999999999999999999999998
Q ss_pred hc
Q psy15414 1027 NC 1028 (1458)
Q Consensus 1027 ~~ 1028 (1458)
..
T Consensus 84 ~~ 85 (117)
T cd07375 84 EL 85 (117)
T ss_pred Hh
Confidence 44
No 200
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=93.87 E-value=0.58 Score=46.75 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHhhhhhc
Q psy15414 952 TRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL-YDISTAFSEFYDNC 1028 (1458)
Q Consensus 952 aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL-~~LA~~fN~fy~~~ 1028 (1458)
.|+.++..+..... .|. ..+ .+.++.++..+......+.+++++++++.+++.+ +++....|.|.+.+
T Consensus 14 ~R~~~~~~~~~~~~--~~~------~~~-~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~ 82 (117)
T cd07959 14 ERFYELAEELIETE--GEL------EEL-TFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERG 82 (117)
T ss_pred HHHHHHHHHHHhcc--CCc------ccc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999988752211 110 112 3567888999999999999999999999999997 99999999887654
No 201
>KOG2007|consensus
Probab=93.44 E-value=0.52 Score=57.49 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=76.5
Q ss_pred EEEEEecCCCCCCCccccchhhhhHHHHHHHHHH-HcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHH
Q psy15414 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLE-YLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 293 (1458)
Q Consensus 215 ~V~VEfsSpN~akplHvGHlRstiIGdslaril~-~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~ 293 (1458)
+|=.=-+.|-.=-.-|+||+|+.|-=|.|.|+|+ +.||+|+-+--|-| +. .+
T Consensus 55 ~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTD----VD-----------------------DK 107 (586)
T KOG2007|consen 55 KVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITD----VD-----------------------DK 107 (586)
T ss_pred eEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccc----hh-----------------------HH
Confidence 3333334444445679999999999999999999 99999986654444 11 02
Q ss_pred HHHHhh-hhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhccee-ccc-chhhhhhhHHHHHHH
Q psy15414 294 FYKESK-KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TER-GESFYQKHMEQLVPY 370 (1458)
Q Consensus 294 ~y~~~~-~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f-~~~-gEs~y~~~~~~vv~~ 370 (1458)
+.+.++ +.+.+.+ ..|......-.++|.+=..+|+|-- +.. --|-|-+.|-..|+.
T Consensus 108 II~RAr~~~m~e~~---------------------~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqk 166 (586)
T KOG2007|consen 108 IIKRARKEEMGEKP---------------------LSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQK 166 (586)
T ss_pred HHHHhhhhhhccch---------------------hhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHH
Confidence 222221 0111111 1233321134566777777888732 111 124455556667788
Q ss_pred HHHCCCeeecCCCeEEec
Q psy15414 371 LEKKGLLELDDGRKIMWG 388 (1458)
Q Consensus 371 L~~kg~~~~~dGa~~~~~ 388 (1458)
+.++|+.|..||.+...+
T Consensus 167 IIdnG~aY~~dGsVYFdv 184 (586)
T KOG2007|consen 167 IIDNGYAYAVDGSVYFDV 184 (586)
T ss_pred HHhCCceeeeCCcEEEec
Confidence 889999999999976444
No 202
>KOG1147|consensus
Probab=93.36 E-value=0.095 Score=63.78 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHCCCeeccCCC
Q psy15414 1350 ICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 1400 (1458)
Q Consensus 1350 ~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~G~~Ye~~ga 1400 (1458)
+.+.|.+||.-+|+..|+|-+-| -|.+.+-..-..|.+.|.+|-.|--
T Consensus 251 Fe~~IleDl~~LgIkpd~~TyTS---DyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 251 FEDVILEDLSLLGIKPDRVTYTS---DYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred HHHHHHHHHHHhCcCcceeeech---hhHHHHHHHHHHHHhcCcccccCCc
Confidence 45799999999999999988866 3445566677888999999996633
No 203
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=93.07 E-value=0.33 Score=59.19 Aligned_cols=55 Identities=16% Similarity=0.039 Sum_probs=39.8
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 818 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
+-+.|.||..|+..-..+++..+-.. ..-.... ++.+.+|.|||||.||.|++++
T Consensus 180 i~~gG~DQ~~ni~~g~dLar~~~~~~---~~~~t~p--Ll~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 180 LQIGGSDQWGNIRKGRDLIRRNLPSL---GFGLTVP--LLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred eeEecchhHHHHHHHHHHHHHhcCCC---ceeecee--eecCCCCCCccCCCCCcccCCc
Confidence 77799999999999998888776321 1112222 3455678999999999998754
No 204
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.68 E-value=0.3 Score=59.49 Aligned_cols=53 Identities=17% Similarity=0.078 Sum_probs=36.3
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccch
Q psy15414 818 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKL 875 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l 875 (1458)
+=+=|.||-.-+-.=...++.+|... ....|++. +.+.+|+|||||.||.+++
T Consensus 183 lq~GG~DQ~~ni~~grdl~rr~g~~~---~~~lt~PL--L~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 183 LQLGGSDQWGNILAGRDLIRRLGQKK---VVGLTTPL--LTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred hhcCChHHHHHHHHHHHHHHHhCCCC---eEEEEecc--ccCCCCCcccccCCCceEc
Confidence 44557777655444456777888732 34567776 6677999999999996654
No 205
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=91.67 E-value=0.91 Score=59.12 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q psy15414 945 VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEF 1024 (1458)
Q Consensus 945 ~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~f 1024 (1458)
.-+.-++.|+.+|++|..... + ...++..+.+++|++|...+......+..++.......++.+|.+|....+.|
T Consensus 569 ~~l~~~~kRv~NIl~k~~~~~---~--~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~F 643 (682)
T PRK01233 569 KALAAANKRVSNILKKAEGKV---S--GEVDPALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDAF 643 (682)
T ss_pred HHHHHHHHHHHHHHhcccccc---C--CccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHH
Confidence 345678899999999874211 0 01123456789999999999998888888887788899999999999999999
Q ss_pred hhhccccccccccccccchhHHHHHHHHHHHHHHHH
Q psy15414 1025 YDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1060 (1458)
Q Consensus 1025 y~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~g 1060 (1458)
|++.-|..++ +.++..||+|+..+...+...
T Consensus 644 FD~VmVm~~d-----~~iR~NRL~LL~~i~~~f~~i 674 (682)
T PRK01233 644 FDNVMVMAED-----EALRANRLALLASLRELFLRV 674 (682)
T ss_pred hCCCeeeCCC-----HHHHHHHHHHHHHHHHHHHHh
Confidence 9998766444 257899999999988876543
No 206
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.26 E-value=0.1 Score=61.33 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=40.2
Q ss_pred EeeCCccccHHHHHHHHHHcC------CCCCCcceEEEEEeEEEecCCC-cccccccCC-ccchHH
Q psy15414 820 VTDLGQGVHFRLLEECAKKAG------ILNPNKTRMDFVGFGVVLGEDR-KKFKTRSGD-TVKLSE 877 (1458)
Q Consensus 820 Vvg~dq~~hf~~l~~il~alG------~~~~~~~~~~H~~fg~V~~~~G-~KMSKR~Gn-vI~l~D 877 (1458)
=||.||+.|+..-+.+++.++ +..|. ..+..-.++.+-+| +|||||.+| +|.|.|
T Consensus 150 PVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~---~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 150 PVGEDQDQHLELTRDIARRFNHLYGEVFPLPE---ALISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred ccCCCchHHHHHHHHHHHHHHhhcCCccCCcc---ccccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 489999999999999999887 43333 23333134555566 799999999 887644
No 207
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=90.86 E-value=1.2 Score=58.26 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy15414 944 AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1023 (1458)
Q Consensus 944 g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~ 1023 (1458)
+.-+.-++.|+.+|++|...... ...++..+.+++|++|...+..+...+...+...+...++..|.+|....+.
T Consensus 578 ~~~l~~a~kRv~NIl~k~~~~~~-----~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~ 652 (691)
T TIGR00211 578 AEALAAANKRVANILKKGNPVLS-----SEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDE 652 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccc-----CccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHH
Confidence 44466789999999999752210 0112345678999999999998877777777667788899999999999999
Q ss_pred hhhhccccccccccccccchhHHHHHHHHHHHHHHHH
Q psy15414 1024 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1060 (1458)
Q Consensus 1024 fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~g 1060 (1458)
||++.-|..++ ++++..||+|+..+...+...
T Consensus 653 FFD~VmVm~~d-----~~iR~NRL~LL~~i~~lf~~i 684 (691)
T TIGR00211 653 FFDSVMVMADD-----IELRQNRLNFLWGLRQLFLEV 684 (691)
T ss_pred HhCCCEeeCCC-----HHHHHHHHHHHHHHHHHHHHh
Confidence 99998776544 257899999999998876543
No 208
>KOG0434|consensus
Probab=90.28 E-value=0.97 Score=56.76 Aligned_cols=130 Identities=20% Similarity=0.244 Sum_probs=83.3
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
+...+=.-|=.||-.|-||+-+..|-|++-|+.-..||.|.|.+.-+=+|..+.--+.. ..+..-+ . ++
T Consensus 39 ~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDK-------kLgI~g~-~---dV 107 (1070)
T KOG0434|consen 39 KFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDK-------KLGITGR-D---DV 107 (1070)
T ss_pred ceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeech-------hcCCCCH-H---HH
Confidence 34555566888999999999999999999999999999999999999999877521110 0011100 1 11
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEe--cccccccchhHHH---HHH
Q psy15414 685 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT--ERGESFYQKHMEQ---LVP 759 (1458)
Q Consensus 685 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~--~~geS~~~~~v~~---vi~ 759 (1458)
.+-.- ..+.+++|..+. .+-.+.+.+..|||-|++ ...-+.|..-|+. +++
T Consensus 108 ~kmGI------~kYN~ECR~IVm------------------rYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFk 163 (1070)
T KOG0434|consen 108 MKMGI------DKYNNECRKIVM------------------RYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFK 163 (1070)
T ss_pred HHHhH------HhHhHHHHHHHH------------------HHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHH
Confidence 11000 012233443333 344556778888987543 2223555444554 689
Q ss_pred HHHHcCCeEe
Q psy15414 760 YLEKKGLLEL 769 (1458)
Q Consensus 760 ~L~~kG~~ye 769 (1458)
+|-++|++|.
T Consensus 164 eL~~kglVYR 173 (1070)
T KOG0434|consen 164 ELHEKGLVYR 173 (1070)
T ss_pred HHHhcCceec
Confidence 9999999994
No 209
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.19 E-value=0.15 Score=59.25 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=43.9
Q ss_pred EEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHH
Q psy15414 817 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLD 880 (1458)
Q Consensus 817 iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLd 880 (1458)
.+-++|.||..|+..-..+++.+++..+ ...|.. ++.+.+|+|||||.||.++ ..+.|
T Consensus 153 ~l~~~G~DQ~~~i~~~rd~a~r~~~~~~---~~l~~~--ll~~l~G~KMSKS~~~~~~-i~l~d 210 (269)
T cd00805 153 DLQLGGSDQRGNITLGRDLIRKLGYKKV---VGLTTP--LLTGLDGGKMSKSEGNAIW-DPVLD 210 (269)
T ss_pred CeeEecHHHHHHHHHHHHHHHHhCCCCc---EEEeec--cccCCCCCcccCCCCCccc-ccCCC
Confidence 4556999999999999999999987432 223444 4677799999999999986 44433
No 210
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=89.69 E-value=0.23 Score=59.47 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=40.5
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcC------CCCCCcceEEEEEeEEEecCCCcccccccCCccchH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAG------ILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 876 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG------~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~ 876 (1458)
+.+.+. +|.||..|+.--..+++.++ +..|...--.|..+ +.+-+|+|||||.||.|.+.
T Consensus 149 ~~d~Vp--vG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~--l~gLdg~KMSKS~~n~I~L~ 214 (332)
T PRK12556 149 QATHVP--VGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAI--LPGLDGRKMSKSYGNVIPLF 214 (332)
T ss_pred cCCEEE--eccccHHHHHHHHHHHHHHHHhccccCCCceecccccccc--ccCCCCCCCCCCCCCccccc
Confidence 445444 99999999999999998876 22222110013333 45567889999999988664
No 211
>KOG0437|consensus
Probab=89.57 E-value=3 Score=53.11 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=37.8
Q ss_pred CcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEee
Q psy15414 213 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 258 (1458)
Q Consensus 213 ~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~n 258 (1458)
+.|..|-|.=|=.+|-||+||+-|.-==|+-+---+-.|++|.==.
T Consensus 43 ~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPf 88 (1080)
T KOG0437|consen 43 KPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPF 88 (1080)
T ss_pred cCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeec
Confidence 3478999999999999999999988777777777777788876443
No 212
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.60 E-value=0.26 Score=59.78 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=44.0
Q ss_pred CeEEEEeeCCccccHHHHHHHHHHc----CCCCCCcceEEEEEeEEEecCCCccccccc-CCccchHH
Q psy15414 815 DWIVYVTDLGQGVHFRLLEECAKKA----GILNPNKTRMDFVGFGVVLGEDRKKFKTRS-GDTVKLSE 877 (1458)
Q Consensus 815 d~iIyVvg~dq~~hf~~l~~il~al----G~~~~~~~~~~H~~fg~V~~~~G~KMSKR~-GnvI~l~D 877 (1458)
...+=.+|.||..||.--..+++.+ |+..|. ..|..+ +.+-+|+|||||. +|.|.+.|
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~---~l~~~~--lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPS---STYHKF--MPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCch---hHhhhc--ccCCCCCcCCCCCCCCeeeccC
Confidence 3456679999999999999999998 875543 345444 5556788999998 67887754
No 213
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=88.49 E-value=1.6 Score=54.07 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=48.9
Q ss_pred chHHHHHHHHHcCCCCCCCCCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCc-c
Q psy15414 1209 YAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW-G 1281 (1458)
Q Consensus 1209 ~~~~~~~~v~~~~~~~~~~~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDa-g 1281 (1458)
|.-.+.+.|++.- +. ..+.||- -..|.|+.|||+.|-.+.||++++.|+..|++|---|--.|. |
T Consensus 4 Wad~~A~ki~~~~---~~----~~~~v~t-GisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~ 69 (521)
T COG1384 4 WADVIAKKIIEER---PE----DEYVVAT-GISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP 69 (521)
T ss_pred chHHHHHHHHhcC---CC----CcEEEec-CcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc
Confidence 4445556666621 10 3455532 358999999999999999999999999999988888877777 5
No 214
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=88.47 E-value=0.21 Score=58.92 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=44.5
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCC-CCcceEEEEEeEEEecCCCc-ccccccCC-ccchHHHHHH
Q psy15414 818 VYVTDLGQGVHFRLLEECAKKAGILN-PNKTRMDFVGFGVVLGEDRK-KFKTRSGD-TVKLSELLDE 881 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~alG~~~-~~~~~~~H~~fg~V~~~~G~-KMSKR~Gn-vI~l~DLLde 881 (1458)
+=+.|.||..|+.--..+++.+|... ...+...|..+ +.+.+|. |||||.|| .|++.|=-+.
T Consensus 152 ~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~--l~~l~G~~KMSKS~~ns~I~L~d~~~~ 216 (292)
T PF00579_consen 152 LVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPL--LPGLDGQKKMSKSDPNSAIFLDDSPEE 216 (292)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETC--BBSTTSSSBTTTTTTGGS-BTTTTHHH
T ss_pred cccccchHHHHHHHHHHHHhhhcccccccCchheeecc--ccccCCccccCccCCccEEEEeccchh
Confidence 55699999999999999999998640 01234455554 6667888 99999999 8888665443
No 215
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=87.83 E-value=0.38 Score=56.18 Aligned_cols=59 Identities=15% Similarity=-0.026 Sum_probs=44.4
Q ss_pred EEEEeeCCccccHHHHHHHHHHcC-CCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHH
Q psy15414 817 IVYVTDLGQGVHFRLLEECAKKAG-ILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLD 880 (1458)
Q Consensus 817 iIyVvg~dq~~hf~~l~~il~alG-~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLd 880 (1458)
.+=.+|.||..|+.--..+++.++ +..| .-.+..+ +.+.+|.|||||.||.+++..+.+
T Consensus 155 ~~vp~G~DQ~~~i~l~rdla~r~n~~~~p---~~l~~p~--l~~l~G~KMSKS~~~~i~l~~~~d 214 (273)
T cd00395 155 DIQPGGSDQWGNITLGRELARRFNGFTIA---EGLTIPL--VTKLDGPKFGKSESGPKWLDTEKT 214 (273)
T ss_pred cEEEecHHHHHHHHHHHHHHHHhCCCCCC---eEEeecc--ccCCCCCcCCCCCCCCccccccCC
Confidence 355599999999999999999885 3232 3345444 677789999999999988765544
No 216
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=87.57 E-value=2.8 Score=56.43 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=78.4
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy15414 942 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAF 1021 (1458)
Q Consensus 942 n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~f 1021 (1458)
+...-+.-++.|+.+|++|.... .+ ++..+.+++|++|...+......+... ......+...|.+|....
T Consensus 891 ~~~~~l~~a~kRv~NIl~k~~~~--~v------d~~Lf~~~~E~~L~~a~~~~~~~~~~~--~~dy~~al~~La~L~~~I 960 (1000)
T PRK14908 891 EIFAEIAAALNRLKRILASLSFS--VT------DASLLLEPAELNLKQALDAFREELTEL--PIDLKDYVAAAAELPQAV 960 (1000)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCC--cc------ChhhcCCHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHhhhhHH
Confidence 33455778999999999997521 11 234566899999998888887766655 335677888999999999
Q ss_pred HhhhhhccccccccccccccchhHHHHHHHHHHHHHHHH
Q psy15414 1022 SEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1060 (1458)
Q Consensus 1022 N~fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~g 1060 (1458)
+.||++.-|..++ +.++..||+|+..+...+...
T Consensus 961 d~FFD~VmVm~eD-----~~iR~NRLaLL~~i~~lf~~v 994 (1000)
T PRK14908 961 NTFFDEVLVMADD-----EAIRNARLGLLAAIRDLKFGV 994 (1000)
T ss_pred HHHhCCCEeeCCC-----HHHHHHHHHHHHHHHHHHHhh
Confidence 9999998776544 357899999999998876543
No 217
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=87.55 E-value=6.2 Score=42.93 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHhhhhhcc-ccccccccccccchhHHHHHHHHHHHHH
Q psy15414 981 HEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST--AFSEFYDNCY-CIEKDAEGKIKTVHTGRLLLAEATAKVM 1057 (1458)
Q Consensus 981 ~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~--~fN~fy~~~~-vL~k~~~~~~~~~~~aRL~L~~av~~VL 1057 (1458)
.+.++.++..+..+...+.+++++++++.++..+++++. ..|.|++..+ ++-.+... ...| .++..+|
T Consensus 43 ~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~-----~~~~----~~~~~~l 113 (180)
T cd07960 43 LELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKD-----SLER----RSAQTVL 113 (180)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcccceecCCCC-----CHHH----HHHHHHH
Confidence 355677999999999999999999999999999999996 5699988764 33211000 1112 2233455
Q ss_pred HHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcC
Q psy15414 1058 KKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMN 1095 (1458)
Q Consensus 1058 ~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g 1095 (1458)
..+++.+.+ .|.|++|...+.+...+|
T Consensus 114 ~~~l~~l~~-----------lL~P~~P~~aeel~~~l~ 140 (180)
T cd07960 114 YHILDALLK-----------LLAPILPFTAEEVWEHLP 140 (180)
T ss_pred HHHHHHHHH-----------HHcchhhhhHHHHHHhcc
Confidence 555555544 667788888877777665
No 218
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=86.86 E-value=0.39 Score=59.20 Aligned_cols=57 Identities=18% Similarity=0.049 Sum_probs=42.1
Q ss_pred eEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 816 WIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 816 ~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
-.|=+.|.||..|+..-..+++.+|... ....+.+ ++.+.+|+|||||.||.|+++|
T Consensus 189 ~~i~~gG~DQ~~ni~~grdla~r~~~~~---~~~l~~p--lL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 189 CDLQLGGSDQWGNILSGRDLQRRYGGKP---QFGLTMP--LLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred CCEEeccHHHHHHHHHHHHHHHHhCCCC---eEEEecC--CcCCCCCCcccCCCCCceeCCC
Confidence 3455589999999998888888888532 1222333 3567789999999999999865
No 219
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=86.66 E-value=0.5 Score=56.65 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCc--cccccc-CCccchHHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK--KFKTRS-GDTVKLSEL 878 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~--KMSKR~-GnvI~l~DL 878 (1458)
++|.++ +|.||..|+.--..+++.+|+..| ...+..+ +.+-+|. |||||. ||.|++.|=
T Consensus 168 ~ad~vp--vG~DQ~~h~~l~Rdia~~~n~~~p---~~l~~~~--l~~L~g~~~KMSKS~p~~~I~L~D~ 229 (329)
T PRK08560 168 DVDIAV--GGMDQRKIHMLAREVLPKLGYKKP---VCIHTPL--LTGLDGGGIKMSKSKPGSAIFVHDS 229 (329)
T ss_pred CCCEEE--echhHHHHHHHHHHhhHhcCCCCc---eEEEcCc--cCCCCCCCCCCcCCCCCCeecccCC
Confidence 556444 999999999988999999987433 2344443 5555665 999999 999987543
No 220
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.18 E-value=0.49 Score=57.94 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=41.3
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCC-------CCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAGIL-------NPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG~~-------~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
+.+.+- +|.||..|..--..+++.++.. .|.. ..+...-+|.+-+|+|||||.||.|.+.|
T Consensus 148 ~ad~VP--VG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~--~i~~~~~~I~gLdg~KMSKS~~n~I~L~D 215 (431)
T PRK12284 148 NAHKVP--VGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEA--VIEESVATLPGLDGRKMSKSYDNTIPLFA 215 (431)
T ss_pred CCCEEE--EcchhHHHHHHHHHHHHHHhhhcCCcccCCCcc--ccccccccccCCCCccccCCCCCEeeecC
Confidence 455555 9999999999988999887621 1211 11111224566678999999999997643
No 221
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=85.66 E-value=15 Score=47.56 Aligned_cols=159 Identities=21% Similarity=0.186 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccc--cchhhHHhh-hcCcHHHHHHH
Q psy15414 874 KLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYV--FSFDKMLDD-RGNTAVYLLYA 950 (1458)
Q Consensus 874 ~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~--Fd~d~~l~~-n~n~g~ylqYa 950 (1458)
.+.+|++=+..|....+.+.+. +.+ +.++ .|...+...++ ...+.+..+ +...+--+--+
T Consensus 521 ~~~~l~~F~~~Rl~~~l~d~g~----~~d----ii~A---------VL~~~~~~l~~i~~r~~al~~f~~~~~~~~l~~a 583 (691)
T COG0751 521 VLEELLDFFLGRLRTYLQDEGY----RKD----IIDA---------VLALNPTDLLDIIARAEALQEFLDLPEAKALAAA 583 (691)
T ss_pred hHHHHHHHHHHHHHHHHHccCC----CHH----HHHH---------HHcCCCCCHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 3566766666666666654332 221 1111 13333333333 333444444 22334445578
Q ss_pred HHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhccc
Q psy15414 951 YTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1030 (1458)
Q Consensus 951 ~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~v 1030 (1458)
+.|+.+|+.|..... + ...++..+.+++|..|...+..+...+..++..-+...+...|.+|..-...||++.-|
T Consensus 584 ~kRv~nIl~k~~~~~---~--~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~VmV 658 (691)
T COG0751 584 NKRVSNILAKAEKKL---S--GTVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVMV 658 (691)
T ss_pred HHHHHHHHHhccccc---C--CccChHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCcee
Confidence 999999999875311 1 01233456678999999999999999999998888888999999999999999999776
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHH
Q psy15414 1031 IEKDAEGKIKTVHTGRLLLAEATAKVMKK 1059 (1458)
Q Consensus 1031 L~k~~~~~~~~~~~aRL~L~~av~~VL~~ 1059 (1458)
..++ +.++..||+|+..++..+..
T Consensus 659 m~eD-----~~iR~NRLalL~~l~~~f~~ 682 (691)
T COG0751 659 MAED-----EALRNNRLALLSKLRELFLK 682 (691)
T ss_pred eCCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 5443 35789999998888876543
No 222
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=85.63 E-value=1.2 Score=53.40 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=41.2
Q ss_pred chHHHHHHHHHcCCCCCCCCCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCc
Q psy15414 1209 YAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 1280 (1458)
Q Consensus 1209 ~~~~~~~~v~~~~~~~~~~~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDa 1280 (1458)
|...+-++|+++ .+...+.+..+.|+ +..-|.|+.|||+.|-.+.++.|+|.|+..|++|---|...|-
T Consensus 3 W~d~~A~~i~~~--r~~~~~~~~~~v~~-sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~ 71 (360)
T PF01921_consen 3 WADEIADEIIKE--RGKRKGGKEPYVFA-SGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDM 71 (360)
T ss_dssp HHHHHHHHHHHH--C-------SEEEEE-EEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TT
T ss_pred chHHHHHHHHHH--hhccccCCccEEEe-cCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecC
Confidence 555566677743 12222245566663 4568999999999999999999999999999995555555554
No 223
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=85.56 E-value=0.57 Score=54.92 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=40.0
Q ss_pred EeeCCccccHHHHHHHHHHcC------CCCCCcceEEEEEeEEEecCCC--cccccccC-CccchHH
Q psy15414 820 VTDLGQGVHFRLLEECAKKAG------ILNPNKTRMDFVGFGVVLGEDR--KKFKTRSG-DTVKLSE 877 (1458)
Q Consensus 820 Vvg~dq~~hf~~l~~il~alG------~~~~~~~~~~H~~fg~V~~~~G--~KMSKR~G-nvI~l~D 877 (1458)
.+|.||..|+.--..+++.++ +.. +...|....+|.+-+| +|||||.| |.|++.|
T Consensus 142 pvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~---P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 142 PVGIDQDPHLELTRDIARRFNKLYGEIFPK---PAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred eeccccHHHHHHHHHHHHHhccccccccCC---CeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 469999999999999999988 422 3445552223444444 59999999 9998765
No 224
>KOG0436|consensus
Probab=84.18 E-value=6.3 Score=47.46 Aligned_cols=104 Identities=19% Similarity=0.350 Sum_probs=68.6
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHHHHHhhhhcCC
Q psy15414 225 IAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 304 (1458)
Q Consensus 225 ~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~ 304 (1458)
++-+-|+||+-|+++-|+|||--++.|-.|.-.-=+...|.-|...++.
T Consensus 50 vNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat------------------------------- 98 (578)
T KOG0436|consen 50 VNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT------------------------------- 98 (578)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh-------------------------------
Confidence 4556799999999999999999999998665544333333333222211
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHHHHHHHHCCCeeec
Q psy15414 305 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELD 380 (1458)
Q Consensus 305 ~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~vv~~L~~kg~~~~~ 380 (1458)
...+| .++||..-+.|..+...+||.++. .-+--....|.+.-+.+.+.|+++..
T Consensus 99 ---------------nG~~P------~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g 156 (578)
T KOG0436|consen 99 ---------------NGRNP------PELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRG 156 (578)
T ss_pred ---------------cCCCh------HHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeee
Confidence 01122 367777777888888888887642 12223344567777788899998754
No 225
>PLN02486 aminoacyl-tRNA ligase
Probab=81.58 E-value=0.84 Score=55.65 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=40.2
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC--cccccccCC-ccchHH
Q psy15414 818 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGD-TVKLSE 877 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G--~KMSKR~Gn-vI~l~D 877 (1458)
+==+|.||+.||.-...+++.+|+..| ...|..+ +.+-.| +|||||.+| .|++.|
T Consensus 222 lVPvG~DQd~~~~ltRdia~r~~~~kp---~~~~~~~--lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPRLGYYKP---ALIESRF--FPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred eeecccchHHHHHHHHHHHHHhCCCCc---ceecccc--ccCCCCCCCcCcCcCCCCeeeccC
Confidence 334699999999999999999997544 3446555 222233 699999988 698865
No 226
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=80.71 E-value=14 Score=38.58 Aligned_cols=45 Identities=2% Similarity=-0.043 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHH-Hhhhhhcc
Q psy15414 985 FALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI-STAF-SEFYDNCY 1029 (1458)
Q Consensus 985 ~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~L-A~~f-N~fy~~~~ 1029 (1458)
+-++..+..+.+.+.+++++++++.++..++.+ ...+ |.|++.++
T Consensus 2 ~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k 48 (153)
T PF08264_consen 2 RWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIK 48 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457788899999999999999999999999996 6677 88888874
No 227
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=79.42 E-value=1.2 Score=53.36 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=40.1
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcC--CCCCCc--ce--EEEEEeEEEecCCC-cccccccCCccchHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAG--ILNPNK--TR--MDFVGFGVVLGEDR-KKFKTRSGDTVKLSE 877 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG--~~~~~~--~~--~~H~~fg~V~~~~G-~KMSKR~GnvI~l~D 877 (1458)
+.+.+ .+|.||..||.-...+++.+| +..|.. +. ..|.. +|.+-+| +|||||.+|.|.+.|
T Consensus 142 ~~d~v--pvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~--~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 142 KATLV--PVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAG--RLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred CCCEE--EeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCC--cccCCCCCCcCCCCCCCeeeeeC
Confidence 44544 499999999999999999888 321110 01 11222 3444455 799999999997754
No 228
>KOG1147|consensus
Probab=77.98 E-value=5.8 Score=49.11 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=28.3
Q ss_pred HHHHHHHhCCEEec-ccccccchhHHHHHHHHHHcCCeEeeC
Q psy15414 731 FQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLELDD 771 (1458)
Q Consensus 731 f~~~y~~L~i~f~~-~geS~~~~~v~~vi~~L~~kG~~ye~d 771 (1458)
..++...|||.-+. .-.|.|-+.+.....+|++.|.+|.+|
T Consensus 255 IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 34556678884321 124677778888888999999998654
No 229
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=76.30 E-value=1.5 Score=52.74 Aligned_cols=63 Identities=22% Similarity=0.234 Sum_probs=42.2
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCC---CcceEEEEEe-EEEecCCCc--ccccccC---CccchHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAGILNP---NKTRMDFVGF-GVVLGEDRK--KFKTRSG---DTVKLSE 877 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~---~~~~~~H~~f-g~V~~~~G~--KMSKR~G---nvI~l~D 877 (1458)
+.|.+ .+|.||..|+.--..+++.++.... ..+...|..+ .++.+-+|. |||||.+ |.|.+.|
T Consensus 138 ~~div--pvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 138 KADLV--PVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred CCCEE--eeccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 44544 4999999999999999998873100 0123344443 345555665 9999999 8998755
No 230
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=75.67 E-value=2.3 Score=51.92 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=40.4
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecC-CC-cccccccCC-ccchHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGE-DR-KKFKTRSGD-TVKLSE 877 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~-~G-~KMSKR~Gn-vI~l~D 877 (1458)
+.|.+ .+|.||..|+.-...+++.+|+..+ ..+.|..+ |.+- +| +|||||.+| .|.+.|
T Consensus 210 ~adiv--pvG~DQ~~~~~LaRdia~~~~~~~~--~~~~~~~~--lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 210 KADIC--QLGMDQRKVNMLAREYCDKKKIKKK--PIILSHHM--LPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred CCCEE--EeCccHHHHHHHHHHHHHHhCCCCC--ceeecccc--cccCCCCCCCCCcCCCCCeecCCC
Confidence 45544 4899999999888889999995321 22334444 5444 44 699999987 587654
No 231
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=71.81 E-value=2.3 Score=51.90 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=26.5
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHH-HcCCcEEEEeecCCch
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLE-YLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~-~~Gy~V~r~~yInD~G 654 (1458)
|++--|+|.+||||.-++ +.++.+ ..|+++ .+.|-||=
T Consensus 6 ~sGiqPSG~~HLGnylG~-----ik~wv~lq~~~~~--~~~IADlH 44 (398)
T PRK12283 6 LSGMRPTGRLHLGHYHGV-----LKNWVKLQHEYEC--FFFVADWH 44 (398)
T ss_pred EEEeCCCCcchHHHHHHH-----HHHHHHHhcCCcE--EEEeecHH
Confidence 688899999999996543 345444 236665 46788873
No 232
>KOG1148|consensus
Probab=57.11 E-value=11 Score=47.26 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=47.1
Q ss_pred CCceEEEEeeCCccCCccccchhhHHH----------------------------HHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTI----------------------------IGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsai----------------------------IGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
.|++|.- =--|-|+|.|||||+.... ..++|..+.+-+||+-.++-|--|.
T Consensus 245 TGGkV~T-RFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDy 323 (764)
T KOG1148|consen 245 TGGKVVT-RFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDY 323 (764)
T ss_pred hCCeeEE-eCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhH
Confidence 3556644 4468999999999998543 4688999999999999999999998
Q ss_pred hhHHHHHHHHH
Q psy15414 654 GTQFGMLIAHL 664 (1458)
Q Consensus 654 G~Qi~~l~~~~ 664 (1458)
=.|+-.++.-+
T Consensus 324 FdqLy~~av~L 334 (764)
T KOG1148|consen 324 FDQLYELAVEL 334 (764)
T ss_pred HHHHHHHHHHH
Confidence 55555444444
No 233
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=49.90 E-value=11 Score=49.43 Aligned_cols=59 Identities=19% Similarity=0.096 Sum_probs=39.6
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecC-CC-ccccccc-CCccchHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGE-DR-KKFKTRS-GDTVKLSE 877 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~-~G-~KMSKR~-GnvI~l~D 877 (1458)
+.|.+. +|.||..|+.-...++..+|... ...+.|..+ +.+- +| .|||||. +|.|.+.|
T Consensus 175 ~adivp--vG~DQ~qh~eLaRdia~~~g~~~--kpvil~~~~--LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 175 KADICQ--LGLDQRKVNMLAREYCDLIGRKL--KPVILSHHM--LAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred CCCEEE--eCccHHHHHHHHHHHHHHhCCCC--Cceeccccc--CcCCCCCCCcCCCCCCCCeecccC
Confidence 455443 89999999988788888888421 122344444 4433 33 5999999 68998765
No 234
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=46.58 E-value=17 Score=42.40 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=30.0
Q ss_pred eeCCccCC-ccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchh
Q psy15414 610 FSSPNIAK-EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 655 (1458)
Q Consensus 610 ~~SpNp~k-plHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~ 655 (1458)
||+--||| .+|+||+-.+ ..+.++.+ .|++| ...|+||=.
T Consensus 4 y~G~~PTg~~lHLG~~~~~---~~~~~lq~-~g~~~--~ilI~D~~a 44 (269)
T cd00805 4 YIGFDPTAPSLHLGHLVPL---MKLRDFQQ-AGHEV--IVLIGDATA 44 (269)
T ss_pred EEeeCCCCCcccHHHHHHH---HHHHHHHH-CCCeE--EEEECCCee
Confidence 78889999 8999997753 25666665 49876 667888743
No 235
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=43.10 E-value=1.5e+02 Score=32.15 Aligned_cols=48 Identities=8% Similarity=0.038 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh-hhc
Q psy15414 981 HEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFY-DNC 1028 (1458)
Q Consensus 981 ~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy-~~~ 1028 (1458)
...++-++..+.++...+.+++++++++.++..+++.......+| +.+
T Consensus 46 ~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~~f~~~~~~~Y~e~~ 94 (183)
T cd07961 46 NVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWYIRRN 94 (183)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHhhhc
Confidence 356788899999999999999999999999999999988775544 544
No 236
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=42.99 E-value=24 Score=43.38 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=28.5
Q ss_pred EeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchh
Q psy15414 609 DFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 655 (1458)
Q Consensus 609 E~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~ 655 (1458)
=|++--|||++|||| .++-.--+.. |..+|++|+ ..|.||=.
T Consensus 69 v~~G~~PTG~lHLG~--g~i~~~~~~~-lq~~G~~v~--~~IaD~hA 110 (383)
T PTZ00126 69 CYDGFEPSGRMHIAQ--GILKAINVNK-LTKAGCVFV--FWVADWFA 110 (383)
T ss_pred EEEEECCCCcccccc--hHhHhHHHHH-HHhCCCeEE--EEEcccee
Confidence 488999999999999 2221223344 467799765 56889843
No 237
>PLN02886 aminoacyl-tRNA ligase
Probab=42.53 E-value=21 Score=43.81 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=27.7
Q ss_pred EEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 608 VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 608 VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
+=|++--|+|.+||||.-.++ .-...+ +. ||++ .+.|-||
T Consensus 48 ~v~sGiqPSG~lHLGnylGai--~~~v~l-Q~-~~~~--~~~IADl 87 (389)
T PLN02886 48 RVVSGVQPTGSIHLGNYLGAI--KNWVAL-QE-TYDT--FFCVVDL 87 (389)
T ss_pred eEEEEECCCCccHHHHHHHHH--HHHHHH-hc-cCCE--EEEEecH
Confidence 468999999999999965554 222223 22 7776 4778887
No 238
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=39.81 E-value=23 Score=42.61 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=27.0
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
|++--|+|++|+||+= ++.- +.++- .+|++| ...|.||=
T Consensus 34 ~~G~~PTG~lHLG~~~-~~~~--~~~lq-~~g~~~--~i~IaD~h 72 (329)
T PRK08560 34 YIGFEPSGKIHLGHLL-TMNK--LADLQ-KAGFKV--TVLLADWH 72 (329)
T ss_pred EEccCCCCcchhhhhH-HHHH--HHHHH-HCCCeE--EEEEccch
Confidence 6999999999999953 2222 44443 358765 56799983
No 239
>KOG1148|consensus
Probab=38.86 E-value=32 Score=43.39 Aligned_cols=75 Identities=20% Similarity=0.351 Sum_probs=58.2
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCceEEEeecCCCCCccccccchhHHHH----------------------------HHH
Q psy15414 1208 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII----------------------------GDT 1259 (1458)
Q Consensus 1208 ~~~~~~~~~v~~~~~~~~~~~~~~~v~ve~vsanptgplh~gh~r~~~~----------------------------gd~ 1259 (1458)
....+++++=|+. .|.+|.--|. +.|.|-||+||+.+..+ =++
T Consensus 232 ~~t~ellk~HL~~--------TGGkV~TRFP-PEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~s 302 (764)
T KOG1148|consen 232 QHTEELLKEHLER--------TGGKVVTRFP-PEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFES 302 (764)
T ss_pred cchHHHHHHHHHh--------hCCeeEEeCC-CCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHH
Confidence 3445555555542 3456777675 78999999999976432 378
Q ss_pred HHHHHHHcCCcEEEEeeeCCcccHHHHHHHHh
Q psy15414 1260 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 1291 (1458)
Q Consensus 1260 ~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~ 1291 (1458)
+..+.++.||+-.+--|=-|.=-|+--||..|
T Consensus 303 I~e~V~WLG~~P~kvTysSDyFdqLy~~av~L 334 (764)
T KOG1148|consen 303 IKEMVAWLGFEPYKVTYSSDYFDQLYELAVEL 334 (764)
T ss_pred HHHHHHHhCCCceeeecchhHHHHHHHHHHHH
Confidence 99999999999999999999999999888865
No 240
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=38.39 E-value=29 Score=40.88 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=27.8
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
|++--|+|.+|+||+-+++. ..+-|+.+|++|. ..|.|+
T Consensus 3 ~tG~~PTG~lHLG~~~~al~---~~~~lQ~ag~~~~--~~IaD~ 41 (280)
T cd00806 3 LSGIQPSGSLHLGHYLGAFR---FWVWLQEAGYELF--FFIADL 41 (280)
T ss_pred EEeeCCCchhhHHHHHHHHH---HHHHHHhCCCCEE--EEecch
Confidence 68889999999999877543 2333445588764 458887
No 241
>PLN02886 aminoacyl-tRNA ligase
Probab=35.34 E-value=25 Score=43.17 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=27.0
Q ss_pred ecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCc
Q psy15414 1237 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 1280 (1458)
Q Consensus 1237 ~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDa 1280 (1458)
|+---|||.+|+||.-|++ .-...+.+ ||++. |.|-|+
T Consensus 50 ~sGiqPSG~lHLGnylGai--~~~v~lQ~--~~~~~--~~IADl 87 (389)
T PLN02886 50 VSGVQPTGSIHLGNYLGAI--KNWVALQE--TYDTF--FCVVDL 87 (389)
T ss_pred EEEECCCCccHHHHHHHHH--HHHHHHhc--cCCEE--EEEecH
Confidence 4455899999999977766 34444544 78763 777776
No 242
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=34.96 E-value=93 Score=27.88 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=32.0
Q ss_pred HHHH-hhhHHHHHHHHHHHHHHHHhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHhhhccc
Q psy15414 1000 LVTR-DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066 (1458)
Q Consensus 1000 ~a~~-~~~p~~l~~yL~~LA~~fN~fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI 1066 (1458)
++++ +++...++..|+++++..|+..... ....+ .++...+.....+|||
T Consensus 4 ~AmdDDfNT~~Ala~lf~l~~~~N~~~~~~--------------~~~~~---~~~~~~l~~~~~vLGl 54 (63)
T PF09190_consen 4 EAMDDDFNTPEALAALFELVKEINRALESN--------------DKEDL---EALAAALRKLLDVLGL 54 (63)
T ss_dssp HHHCBTS-HHHHHHHHHHHHHHHHHHHHCC---------------HHHH---HHHHHHHHHHHHCCT-
T ss_pred HHHhHhcCcHHHHHHHHHHHHHHHHhcccC--------------CHHHH---HHHHHHHHHHHhcCcC
Confidence 3443 6888899999999999999911111 11112 4456677777899998
No 243
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=34.77 E-value=27 Score=42.12 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=27.4
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHH
Q psy15414 1238 SSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 1284 (1458)
Q Consensus 1238 vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~ 1284 (1458)
+---|||+||+||.=|++ --+.++-+. |+| -|.|.|+=.++
T Consensus 6 ~G~~PTG~lHLG~~~g~~--~~~~~lQ~~--~~~--~~~IaD~ha~t 46 (333)
T PRK00927 6 SGIQPTGKLHLGNYLGAI--KNWVELQDE--YEC--FFCIADLHALT 46 (333)
T ss_pred EeeCCCccchHHhHHHHH--HHHHHHHhc--CCe--EEEEecHHHHh
Confidence 445799999999987775 334445442 665 47888774444
No 244
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=33.74 E-value=33 Score=42.11 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=31.7
Q ss_pred ecCCCCCC-CccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHH
Q psy15414 220 FSSPNIAK-EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 268 (1458)
Q Consensus 220 fsSpN~ak-plHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~ 268 (1458)
|+---||+ .||+||+= +=...+-|..+||+|+-. ||||=.++|
T Consensus 34 y~G~dPTg~~lHlGh~v----~l~~l~~lq~~G~~~~il--igd~ta~ig 77 (377)
T TIGR00234 34 YVGFDPTAPSLHLGHLV----PLLKLRDFQQAGHEVIVL--LGDATALIG 77 (377)
T ss_pred EEeeCCCCCCccHHHHH----HHHHHHHHHHCCCcEEEE--Eeccchhhc
Confidence 78889999 89999963 333344455579988655 899877775
No 245
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=32.10 E-value=45 Score=39.10 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=26.1
Q ss_pred eeCCccCC-ccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAK-EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~k-plHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|+| .||+||+-. -.. .+.|+..|++|. .-|+|+
T Consensus 3 y~G~~PTg~~lHlGh~~~---l~~-~~~lq~~g~~~~--~~I~d~ 41 (273)
T cd00395 3 YCGIDPTADSLHIGHLIG---LLT-FRRFQHAGHRPI--FLIGGQ 41 (273)
T ss_pred EEeEcCCCCCccHHHHHH---HHH-HHHHHHCCCCEE--EEEecC
Confidence 68889999 699999644 222 334445688874 457876
No 246
>PF15294 Leu_zip: Leucine zipper
Probab=31.66 E-value=76 Score=37.12 Aligned_cols=50 Identities=32% Similarity=0.502 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHhhcccCCCCC-----------------C-----CcHHHHHHHHHhhhhhHHHHHHHH
Q psy15414 2 SIKELKLKEFISKVNELSTKGFISE-----------------S-----ATEDVLAAQLQNTKLKHRLAILQR 51 (1458)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-----~~~~~~~~~~~~~~~~~~~~~~~~ 51 (1458)
+|.|.|=++|-+++++.+...+.+. . -+.+...|++||.|||-|+.-++.
T Consensus 82 diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~ 153 (278)
T PF15294_consen 82 DISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEK 153 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888864443222 1 126778999999999999987754
No 247
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=31.64 E-value=45 Score=37.05 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=28.5
Q ss_pred ccchhHHHHHHHHHHHHHHcCCcEEEEeeeC
Q psy15414 1248 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 1278 (1458)
Q Consensus 1248 ~gh~r~~~~gd~~~~~l~~~g~~v~re~yvn 1278 (1458)
+||.-|++++=-+|+.|+.+|++|.+-+-++
T Consensus 71 ~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 71 AGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp EEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred hccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 6999999999999999999999999998776
No 248
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=30.75 E-value=40 Score=39.77 Aligned_cols=39 Identities=21% Similarity=0.421 Sum_probs=26.7
Q ss_pred EeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 609 DFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 609 E~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
=|++--|+|+||+||+=... .+.++.+ .|++|+ .-|+||
T Consensus 8 ~y~G~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~--i~iaD~ 46 (292)
T PF00579_consen 8 VYTGIDPTGDLHLGHLVPIM---KLIWLQK-AGFKVI--ILIADL 46 (292)
T ss_dssp EEEEEESSSS-BHHHHHHHH---HHHHHHH-TTSEEE--EEEEHH
T ss_pred EEEeECCCCcccchHHHHHH---HHHHHHh-cCCccc--eEecch
Confidence 37888999999999976553 3334433 788775 467887
No 249
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=30.35 E-value=48 Score=43.65 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=29.6
Q ss_pred EeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 609 DFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 609 E~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
=|++--|||++|||| .++|-.-.+.+...||+| .+.|.||=
T Consensus 35 v~sGi~PTG~lHLGn---g~~~aik~~~~~q~g~~~--~~lIAD~H 75 (682)
T PTZ00348 35 CYDGFEPSGRMHIAQ---GIFKAVNVNKCTQAGCEF--VFWVADWF 75 (682)
T ss_pred EEEeeCCCCcCeecc---HHHHHHHHHHHHhCCCeE--EEEEcchh
Confidence 389999999999999 356633333445678875 55789983
No 250
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=29.69 E-value=56 Score=40.61 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=30.1
Q ss_pred EEeeCCccCCc-cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHH
Q psy15414 608 VDFSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 657 (1458)
Q Consensus 608 VE~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi 657 (1458)
.=||+--|||+ |||||+=. -..+.++ +..||+| ..-|+||=.++
T Consensus 35 ~vy~G~dPTg~slHlGhlv~---l~~l~~l-Q~~G~~~--~~ligd~ta~i 79 (408)
T PRK05912 35 RIYLGFDPTAPSLHLGHLVP---LLKLRRF-QDAGHKP--IALIGGFTGMI 79 (408)
T ss_pred EEEEeecCCCCCccHHhHHH---HHHHHHH-HHCCCcE--EEEEcCceeEc
Confidence 34889999996 99999763 2344444 4579876 55788874433
No 251
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=28.42 E-value=60 Score=39.76 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=26.9
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
|++--|+|.||+||+- --..+..+ ...|++| ...|.||
T Consensus 70 ytG~~PSG~lHLGh~~---~~~~~~~l-Q~~g~~~--~i~IaD~ 107 (368)
T PRK12285 70 YTGFMPSGPMHIGHKM---VFDELKWH-QEFGANV--YIPIADD 107 (368)
T ss_pred EEccCCCCCccHHHHH---HHHHHHHH-HhcCCCE--EEEecch
Confidence 8999999999999963 23334444 4478876 4558887
No 252
>KOG0437|consensus
Probab=26.81 E-value=82 Score=41.08 Aligned_cols=62 Identities=21% Similarity=0.188 Sum_probs=54.2
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 664 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~ 664 (1458)
..|..+-|.=|..+|.||+||+-|.-=-|.-+-+-|-.|++|..=+.+-=.|..|.-.+..+
T Consensus 43 ~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKL 104 (1080)
T KOG0437|consen 43 KPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKL 104 (1080)
T ss_pred cCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHH
Confidence 45789999999999999999999999999999999999999999988888888886544444
No 253
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=25.40 E-value=1.3e+02 Score=26.45 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHhhhhhHHHHHHHH
Q psy15414 27 SATEDVLAAQLQNTKLKHRLAILQR 51 (1458)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (1458)
.+.+++.+|..||..||-.|+.++.
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999988763
No 254
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=25.28 E-value=47 Score=40.00 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=32.4
Q ss_pred ecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHH
Q psy15414 220 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 267 (1458)
Q Consensus 220 fsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~ 267 (1458)
||.--|||.||+||. +|-...+.+...|++| ...|.||=...
T Consensus 6 ~~G~~PTG~~HlG~~----l~~~~~~~~~q~~~~~--~i~IaD~ha~t 47 (328)
T TIGR00233 6 LTGIQPSGKMHLGHY----LGAIQTKWLQQFGVEL--FICIADLHAIT 47 (328)
T ss_pred EEeeCCCcHhHHHHH----HHHHHHHHHHhCCCCE--EEEeecchhhc
Confidence 677789999999996 7777777777888875 45688875433
No 255
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=24.31 E-value=5.2e+02 Score=27.08 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q psy15414 5 ELKLKEFISKVNELSTKGFISESATEDVLAAQLQNTKLKHRLAILQRAIAEEEKKQ 60 (1458)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (1458)
|-|-.++++.|-.|+. +...+..-|..|+.|+.+|+.++..|+.+.
T Consensus 24 eiERaEmkarIa~LEG----------E~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 24 EIERAEMKARIAFLEG----------ERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567778888877752 334456778899999999999999999764
No 256
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=24.24 E-value=69 Score=38.69 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=27.1
Q ss_pred EeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 609 DFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 609 E~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
=|++--|+|++||||.-.++. -.+-|+..|. | ...|.||=
T Consensus 5 v~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~--~i~IaD~h 44 (333)
T PRK12282 5 ILTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q--FVLIADQQ 44 (333)
T ss_pred EEEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E--EEEEccch
Confidence 378889999999999644322 2224566664 5 57788883
No 257
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=22.93 E-value=62 Score=40.26 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=35.1
Q ss_pred hhcCCCEEEEecCCchHHHHHHHHHHHHHHcCCCCCCC----cc--ccccccccCCCcccccCHHH
Q psy15414 420 EEEKADWIVYVTDHRSYHQVLQAIAEEEKKQGISSSSS----SQ--TKGTAKKMNVPVRDRMSVRD 479 (1458)
Q Consensus 420 ~~~~~d~iIyv~D~~~~~~~~~a~~~a~~~~g~~~~~~----~~--~~G~~~kmskr~gt~~~l~~ 479 (1458)
+.+++|-.+=++|+.+. +....+.+++++..+... .+ -+|+ ||||..|+.+.+.+
T Consensus 183 ~~~~~~iq~gG~DQ~~n---i~~grdl~~r~~~~~~~~lt~PlL~g~dG~--KMsKS~~naI~L~d 243 (410)
T PRK13354 183 RKEDVDLQIGGTDQWGN---ILMGRDLQRKLEGEEQFGLTMPLLEGADGT--KMGKSAGGAIWLDP 243 (410)
T ss_pred ccCCCCEEEecHHHHHH---HHHHHHHHHHhCCCCceEeccCCccCCCCC--ccCCCCCCceeccC
Confidence 35588877778999874 455666677776533211 12 2454 99998887766544
No 258
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.92 E-value=1.2e+02 Score=34.20 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHhhcccCCCCC--------CCcHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy15414 4 KELKLKEFISKVNELSTKGFISE--------SATEDVLAAQLQNTKLKHRLAILQRAIAEEE 57 (1458)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1458)
-|+|++.|++++..+.+.-.... ..+....+|+++|.+|+-.+..++.-++..+
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788777777764321110 1122333488999999999999888777643
No 259
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=22.64 E-value=1.1e+02 Score=31.78 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=21.1
Q ss_pred hHHHHHHHHHh--hhhccccCCccccCeeEEEEecCCee
Q psy15414 1165 PFDIAQSIASV--VTSELATNPSLAKVIDKIEVAKPGFV 1201 (1458)
Q Consensus 1165 pr~ia~~~~~~--~~~~~~~~~~~~~~~~~~eiagpGfi 1201 (1458)
-.+||+.|.+. .+. .-+..|=||||||.
T Consensus 56 ~~~i~~~l~~~f~~~~---------~~~~~iIiaGPGf~ 85 (133)
T PF03464_consen 56 FKEIAEALKKYFLVNF---------DDVKCIIIAGPGFT 85 (133)
T ss_dssp HHHHHHHHHHHCCCHT---------TTCSEEEEEESTTH
T ss_pred HHHHHHHHHHHhhhcc---------ccccEEEEECCHHH
Confidence 47889998886 221 23888999999995
No 260
>PLN02486 aminoacyl-tRNA ligase
Probab=22.40 E-value=92 Score=38.36 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=25.4
Q ss_pred eeCCccCCc-cccchhhHHHHHHHHHHHHHHc-CCcEEEEeecCCc
Q psy15414 610 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYL-GHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~-Gy~V~r~~yInD~ 653 (1458)
|++--|+|+ ||||| .|-...++ .|+.+ |..|+-. |+|+
T Consensus 77 YtG~~PSg~~lHlGH---lv~~~~~~-~lQ~~~~~~~~I~--iaD~ 116 (383)
T PLN02486 77 YTGRGPSSEALHLGH---LIPFMFTK-YLQDAFKVPLVIQ--LTDD 116 (383)
T ss_pred EeCCCCCCccccHHH---HHHHHHHH-HHHHhCCCeEEEE--ecCH
Confidence 899999995 99999 33444444 55555 5444333 8886
No 261
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=21.78 E-value=78 Score=39.43 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=27.3
Q ss_pred EeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 609 DFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 609 E~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
=|++-.|+|.+|+||.-+++- . ..++.+..||++ .+.|-||
T Consensus 5 vlSGiqPTG~lHLGNylGaik-~-~v~lq~q~~~~~--~~~IADl 45 (431)
T PRK12284 5 VLTGITTTGTPHLGNYAGAIR-P-AIAASRQPGVES--FYFLADY 45 (431)
T ss_pred EEEEecCCCcchHHHHHHHHH-H-HHHHHHhCCCcE--EEEeech
Confidence 389999999999999443321 1 133444458875 5678887
No 262
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.50 E-value=2.8e+02 Score=28.03 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy15414 5 ELKLKEFISKVNELSTKGFISESATEDVLAAQLQNTKLKHRLAILQRAIAEEE 57 (1458)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1458)
|..+..+-+++..|+. .+..|.+||+.|+-.-..|++-+.+..
T Consensus 14 e~~l~~l~~~~~~LK~----------~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 14 EQQLGQLLEELEELKK----------QLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777754 344555666666655555655555543
Done!