Query psy15414
Match_columns 1458
No_of_seqs 797 out of 3875
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:25:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 4E-101 1E-105 962.7 42.7 562 475-1072 29-607 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 1.2E-97 4E-102 938.7 46.2 562 475-1072 3-629 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 3.3E-90 1.1E-94 869.0 46.3 541 478-1072 3-592 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 1.8E-79 6.1E-84 744.9 41.2 442 576-1074 1-456 (464)
5 1f7u_A Arginyl-tRNA synthetase 100.0 4.3E-68 1.5E-72 664.9 30.9 382 84-488 28-429 (607)
6 2zue_A Arginyl-tRNA synthetase 100.0 1.3E-64 4.4E-69 638.1 32.2 376 85-483 3-443 (629)
7 1iq0_A Arginyl-tRNA synthetase 100.0 1.3E-58 4.5E-63 582.2 29.6 365 87-488 2-416 (592)
8 3fnr_A Arginyl-tRNA synthetase 100.0 1.9E-55 6.6E-60 534.3 29.3 286 186-494 1-313 (464)
9 4dlp_A Aminoacyl-tRNA syntheta 100.0 1E-36 3.5E-41 380.9 29.4 377 603-1097 24-499 (536)
10 1li5_A Cysrs, cysteinyl-tRNA s 100.0 8.1E-37 2.8E-41 373.1 25.9 336 593-1066 11-393 (461)
11 3kfl_A Methionyl-tRNA syntheta 100.0 1.6E-36 5.6E-41 380.4 26.7 378 602-1098 24-517 (564)
12 3h99_A Methionyl-tRNA syntheta 100.0 5.3E-34 1.8E-38 358.2 26.1 401 604-1110 16-549 (560)
13 2csx_A Methionyl-tRNA syntheta 100.0 2.5E-33 8.6E-38 347.7 22.4 372 603-1097 4-469 (497)
14 3tqo_A Cysteinyl-tRNA syntheta 100.0 6.5E-33 2.2E-37 335.1 25.3 340 594-1067 15-397 (462)
15 2x1l_A Methionyl-tRNA syntheta 100.0 1.5E-32 5.3E-37 342.7 26.0 382 602-1098 10-493 (524)
16 2d5b_A Methionyl-tRNA syntheta 100.0 6.9E-33 2.3E-37 344.2 20.8 372 604-1098 3-471 (500)
17 3sp1_A Cysteinyl-tRNA syntheta 100.0 4.3E-30 1.5E-34 311.6 22.4 329 605-1022 42-416 (501)
18 1rqg_A Methionyl-tRNA syntheta 100.0 5.9E-29 2E-33 319.2 28.5 332 604-1029 2-474 (722)
19 3c8z_A Cysteinyl-tRNA syntheta 100.0 2.2E-28 7.5E-33 295.7 28.2 303 603-1023 37-390 (414)
20 3u1f_A Methionyl-tRNA syntheta 100.0 5.5E-27 1.9E-31 293.9 27.0 385 602-1103 7-506 (542)
21 1wkb_A Leucyl-tRNA synthetase; 99.9 7E-22 2.4E-26 258.2 30.7 200 818-1095 606-810 (810)
22 1ile_A Ilers, isoleucyl-tRNA s 99.8 2E-20 6.9E-25 244.2 22.9 173 817-1028 546-723 (821)
23 2o5r_A Glutamyl-tRNA synthetas 99.8 7.7E-21 2.6E-25 232.1 15.5 138 785-941 194-334 (481)
24 1ffy_A Isoleucyl-tRNA syntheta 99.8 5.3E-20 1.8E-24 241.1 23.4 212 817-1075 550-767 (917)
25 3gdz_A Arginyl-tRNA synthetase 99.8 5.3E-21 1.8E-25 188.2 10.2 108 1100-1225 2-109 (109)
26 1irx_A Lysyl-tRNA synthetase; 99.8 2.5E-21 8.6E-26 240.9 5.3 274 582-938 4-325 (523)
27 1gax_A Valrs, valyl-tRNA synth 99.8 4E-18 1.4E-22 221.6 31.1 134 602-771 32-170 (862)
28 2v0c_A Aminoacyl-tRNA syntheta 99.8 2.8E-18 9.7E-23 224.0 26.9 124 863-1026 636-760 (878)
29 4arc_A Leucine--tRNA ligase; l 99.8 2.1E-17 7.3E-22 214.2 34.8 166 817-1024 545-759 (880)
30 3al0_C Glutamyl-tRNA(Gln) amid 99.8 9.2E-19 3.1E-23 218.0 18.3 267 580-941 105-430 (592)
31 3al0_C Glutamyl-tRNA(Gln) amid 99.8 1.5E-19 5E-24 225.1 7.8 173 1206-1456 104-331 (592)
32 1li5_A Cysrs, cysteinyl-tRNA s 99.7 5.6E-17 1.9E-21 198.2 22.1 227 213-494 20-294 (461)
33 4dlp_A Aminoacyl-tRNA syntheta 99.7 1.5E-16 5.1E-21 198.9 20.1 227 213-494 24-349 (536)
34 3gdz_A Arginyl-tRNA synthetase 99.7 3.4E-17 1.1E-21 161.1 11.2 103 84-203 3-105 (109)
35 1wz2_A Leucyl-tRNA synthetase; 99.7 2.1E-15 7.3E-20 199.6 30.7 162 818-1029 606-772 (967)
36 3kfl_A Methionyl-tRNA syntheta 99.7 1.4E-16 4.7E-21 200.1 15.2 228 211-494 23-367 (564)
37 3afh_A Glutamyl-tRNA synthetas 99.7 1.8E-15 6.1E-20 184.6 20.1 247 605-941 25-326 (488)
38 2o5r_A Glutamyl-tRNA synthetas 99.6 5.1E-17 1.7E-21 198.5 5.7 188 1231-1457 11-235 (481)
39 1nzj_A Hypothetical protein YA 99.6 7.2E-16 2.5E-20 177.4 13.5 186 611-878 10-241 (298)
40 1nzj_A Hypothetical protein YA 99.6 1.5E-15 5E-20 174.9 7.3 98 1349-1456 55-200 (298)
41 3c8z_A Cysteinyl-tRNA syntheta 99.6 6.2E-14 2.1E-18 169.5 20.7 227 214-494 38-320 (414)
42 2cfo_A Glutamyl-tRNA synthetas 99.5 7.6E-14 2.6E-18 170.7 18.6 243 612-941 7-320 (492)
43 4g6z_A Glutamate-tRNA ligase; 99.5 1.3E-13 4.5E-18 167.2 20.4 244 604-941 24-335 (490)
44 2d5b_A Methionyl-tRNA syntheta 99.5 1E-13 3.6E-18 172.0 17.6 226 214-494 3-325 (500)
45 3h99_A Methionyl-tRNA syntheta 99.5 2.6E-13 9E-18 170.5 20.5 123 211-385 15-140 (560)
46 1j09_A Glutamyl-tRNA synthetas 99.5 4.3E-13 1.5E-17 163.1 21.3 133 785-940 175-314 (468)
47 3tqo_A Cysteinyl-tRNA syntheta 99.5 2.2E-13 7.4E-18 165.1 17.1 227 213-494 23-297 (462)
48 2csx_A Methionyl-tRNA syntheta 99.5 3.9E-13 1.3E-17 166.6 17.1 227 213-494 4-323 (497)
49 2x1l_A Methionyl-tRNA syntheta 99.4 2.1E-12 7.1E-17 161.2 20.3 122 212-385 10-134 (524)
50 2ja2_A Glutamyl-tRNA synthetas 99.4 5.8E-12 2E-16 153.7 22.5 134 785-941 184-329 (498)
51 4gri_A Glutamate--tRNA ligase; 99.4 9.2E-11 3.1E-15 144.9 32.2 134 785-941 205-345 (512)
52 3afh_A Glutamyl-tRNA synthetas 99.4 4E-13 1.4E-17 164.0 9.6 98 1349-1456 75-227 (488)
53 3aii_A Glutamyl-tRNA synthetas 99.3 1.2E-11 4.3E-16 151.1 13.1 225 604-939 95-392 (553)
54 1irx_A Lysyl-tRNA synthetase; 99.2 8E-12 2.7E-16 155.5 8.1 155 1207-1410 2-182 (523)
55 1qtq_A GLNRS, protein (glutami 99.2 4.6E-11 1.6E-15 146.1 11.7 212 582-882 10-300 (553)
56 3sp1_A Cysteinyl-tRNA syntheta 99.2 3.1E-10 1.1E-14 138.2 18.1 236 215-494 42-328 (501)
57 2ja2_A Glutamyl-tRNA synthetas 99.1 1.3E-10 4.4E-15 141.9 11.2 98 1349-1456 56-224 (498)
58 4g6z_A Glutamate-tRNA ligase; 99.1 2E-10 6.8E-15 139.5 12.3 98 1349-1456 75-236 (490)
59 2hz7_A Glutaminyl-tRNA synthet 99.1 2.9E-10 1E-14 144.6 13.3 212 581-881 49-339 (851)
60 1wkb_A Leucyl-tRNA synthetase; 99.1 1.6E-10 5.4E-15 151.2 10.5 143 213-384 33-183 (810)
61 1j09_A Glutamyl-tRNA synthetas 99.1 1.9E-10 6.4E-15 140.0 9.6 97 1350-1456 52-215 (468)
62 4arc_A Leucine--tRNA ligase; l 98.9 4.4E-09 1.5E-13 136.8 15.9 124 1229-1401 51-176 (880)
63 4gri_A Glutamate--tRNA ligase; 98.9 2.8E-09 9.6E-14 131.7 11.3 146 1230-1452 22-241 (512)
64 1rqg_A Methionyl-tRNA syntheta 98.9 1.9E-08 6.6E-13 129.4 18.7 116 214-381 2-121 (722)
65 2cfo_A Glutamyl-tRNA synthetas 98.9 2.8E-09 9.7E-14 130.4 9.8 97 1349-1455 51-218 (492)
66 2v0c_A Aminoacyl-tRNA syntheta 98.6 9E-08 3.1E-12 125.4 11.9 122 1231-1401 33-156 (878)
67 1ile_A Ilers, isoleucyl-tRNA s 98.5 6.5E-08 2.2E-12 126.6 8.3 138 1230-1400 37-177 (821)
68 3aii_A Glutamyl-tRNA synthetas 98.5 2.2E-07 7.5E-12 113.9 11.1 44 1350-1396 147-190 (553)
69 2hz7_A Glutaminyl-tRNA synthet 98.5 5.7E-07 1.9E-11 114.8 14.0 113 1207-1396 48-161 (851)
70 1qtq_A GLNRS, protein (glutami 98.5 1.1E-06 3.7E-11 107.9 14.9 113 1207-1396 8-121 (553)
71 3u1f_A Methionyl-tRNA syntheta 98.4 1.1E-06 3.6E-11 110.1 13.2 123 1229-1400 7-129 (542)
72 1ffy_A Isoleucyl-tRNA syntheta 98.3 8.9E-07 3E-11 116.6 9.0 132 1230-1398 47-180 (917)
73 1gax_A Valrs, valyl-tRNA synth 98.2 7.7E-06 2.6E-10 106.8 16.0 136 1229-1398 32-170 (862)
74 1wz2_A Leucyl-tRNA synthetase; 97.9 1.5E-05 5.3E-10 105.8 9.0 146 1231-1400 34-182 (967)
75 2cyb_A Tyrosyl-tRNA synthetase 94.5 0.016 5.4E-07 67.6 3.2 60 812-878 169-228 (323)
76 1n3l_A Tyrosyl-tRNA synthetase 93.3 0.031 1E-06 66.3 2.6 60 812-878 177-237 (372)
77 2dlc_X Tyrosyl-tRNA synthetase 92.7 0.039 1.3E-06 65.9 2.3 60 812-878 181-242 (394)
78 2pid_A Tyrosyl-tRNA synthetase 92.5 0.057 2E-06 63.6 3.3 58 813-877 210-267 (356)
79 2yxn_A Tyrosyl-tRNA synthetase 92.0 0.049 1.7E-06 63.3 2.0 56 817-877 193-248 (322)
80 2jan_A Tyrosyl-tRNA synthetase 91.0 0.13 4.5E-06 61.9 4.3 59 812-877 186-245 (432)
81 2ts1_A Tyrosyl-tRNA synthetase 90.8 0.1 3.4E-06 62.7 3.0 57 816-877 186-243 (419)
82 1jil_A Tyrrs, tyrosyl-tRNA syn 90.8 0.11 3.8E-06 62.4 3.4 57 816-877 187-244 (420)
83 1h3f_A Tyrosyl-tRNA synthetase 89.4 0.16 5.4E-06 61.3 3.2 58 813-877 187-245 (432)
84 2g36_A Tryptophanyl-tRNA synth 89.1 0.098 3.3E-06 61.2 1.1 64 812-877 152-218 (340)
85 3tzl_A Tryptophanyl-tRNA synth 88.5 0.066 2.2E-06 62.2 -1.0 64 812-877 138-205 (322)
86 2el7_A Tryptophanyl-tRNA synth 88.0 0.21 7.2E-06 58.4 2.8 61 812-877 140-208 (337)
87 2ip1_A Tryptophanyl-tRNA synth 87.7 0.25 8.6E-06 59.5 3.3 56 817-877 251-309 (432)
88 3i05_A Tryptophanyl-tRNA synth 87.2 0.18 6.3E-06 60.0 1.7 56 817-877 226-283 (395)
89 2cya_A Tyrosyl-tRNA synthetase 87.1 0.24 8.3E-06 58.4 2.7 60 812-878 176-253 (364)
90 1r6u_A Tryptophanyl-tRNA synth 87.0 0.17 5.8E-06 61.0 1.3 52 821-877 262-316 (437)
91 1r6t_A Tryptophanyl-tRNA synth 86.3 0.2 6.7E-06 61.2 1.3 53 821-878 309-364 (477)
92 3hzr_A Tryptophanyl-tRNA synth 86.3 0.33 1.1E-05 57.6 3.2 52 821-877 230-283 (386)
93 3hv0_A Tryptophanyl-tRNA synth 86.0 0.2 6.8E-06 59.6 1.2 55 818-877 223-280 (393)
94 1yi8_B Tryptophanyl-tRNA synth 85.2 0.2 6.9E-06 58.8 0.7 62 812-878 161-229 (351)
95 1y42_X Tyrosyl-tRNA synthetase 85.0 0.25 8.6E-06 58.8 1.3 59 817-877 234-306 (392)
96 3tze_A Tryptophanyl-tRNA synth 84.8 0.51 1.7E-05 56.3 3.9 57 816-877 244-303 (406)
97 3jxe_A Tryptophanyl-tRNA synth 84.3 0.3 1E-05 58.0 1.6 53 820-877 212-267 (392)
98 1i6k_A TRPRS, tryptophanyl-tRN 82.4 0.23 7.9E-06 57.8 -0.4 62 812-878 136-209 (328)
99 2zp1_A Tyrosyl-tRNA synthetase 81.8 0.45 1.5E-05 55.1 1.7 59 812-881 162-221 (314)
100 3vgj_A Tyrosyl-tRNA synthetase 81.6 0.55 1.9E-05 55.6 2.4 60 812-877 199-261 (373)
101 2j5b_A Tyrosyl-tRNA synthetase 81.4 0.46 1.6E-05 55.8 1.6 59 813-878 186-247 (348)
102 2yy5_A Tryptophanyl-tRNA synth 79.4 0.44 1.5E-05 55.9 0.6 61 812-877 146-218 (348)
103 3foc_A Tryptophanyl-tRNA synth 77.6 0.65 2.2E-05 56.0 1.3 52 820-876 292-346 (451)
104 3p0j_A Tyrosyl-tRNA synthetase 71.1 1.4 4.7E-05 56.2 2.0 60 812-877 182-244 (690)
105 2cyc_A Tyrosyl-tRNA synthetase 70.9 1.2 4.1E-05 52.7 1.2 62 812-877 179-265 (375)
106 2el7_A Tryptophanyl-tRNA synth 69.4 1.8 6.2E-05 50.5 2.3 39 610-653 5-44 (337)
107 3a04_A Tryptophanyl-tRNA synth 67.1 2.6 8.9E-05 49.8 3.0 61 814-876 207-269 (372)
108 2dlc_X Tyrosyl-tRNA synthetase 64.1 3.7 0.00013 48.9 3.6 38 610-653 43-80 (394)
109 2g36_A Tryptophanyl-tRNA synth 63.4 3.4 0.00012 48.2 3.0 41 608-653 14-54 (340)
110 2cyb_A Tyrosyl-tRNA synthetase 61.3 4 0.00014 47.3 3.1 38 610-653 36-73 (323)
111 3sz3_A Tryptophanyl-tRNA synth 61.3 1.1 3.6E-05 52.5 -1.8 64 812-877 142-217 (341)
112 3n9i_A Tryptophanyl-tRNA synth 60.9 1.6 5.6E-05 50.9 -0.2 64 812-877 151-223 (346)
113 1n3l_A Tyrosyl-tRNA synthetase 60.6 4.8 0.00016 47.6 3.6 38 610-653 39-76 (372)
114 2yy0_A C-MYC-binding protein; 59.1 12 0.00041 31.5 4.8 32 28-59 17-48 (53)
115 3prh_A Tryptophanyl-tRNA synth 56.2 2.7 9.1E-05 49.9 0.4 61 812-877 170-242 (388)
116 1i6k_A TRPRS, tryptophanyl-tRN 50.7 5.2 0.00018 46.4 1.7 38 610-653 5-42 (328)
117 3hzr_A Tryptophanyl-tRNA synth 44.6 13 0.00045 44.0 3.8 40 609-654 85-125 (386)
118 3a04_A Tryptophanyl-tRNA synth 43.8 11 0.00039 44.3 3.2 38 610-653 74-111 (372)
119 2cya_A Tyrosyl-tRNA synthetase 43.7 12 0.00041 44.0 3.3 38 610-653 39-76 (364)
120 1g6u_A Domain swapped dimer; d 43.2 50 0.0017 25.7 5.4 43 8-54 2-44 (48)
121 1yi8_B Tryptophanyl-tRNA synth 43.1 7.6 0.00026 45.5 1.5 36 610-653 26-63 (351)
122 2ts1_A Tyrosyl-tRNA synthetase 43.0 17 0.00057 43.6 4.5 39 610-654 34-73 (419)
123 2zp1_A Tyrosyl-tRNA synthetase 42.9 10 0.00036 43.6 2.6 38 610-653 32-69 (314)
124 1y42_X Tyrosyl-tRNA synthetase 40.7 17 0.00059 43.0 4.1 38 610-653 68-106 (392)
125 3tzl_A Tryptophanyl-tRNA synth 40.0 7.6 0.00026 44.9 0.8 38 610-653 7-44 (322)
126 2yxn_A Tyrosyl-tRNA synthetase 39.7 18 0.00061 41.8 3.9 39 610-654 37-76 (322)
127 1jil_A Tyrrs, tyrosyl-tRNA syn 39.2 18 0.00061 43.4 3.9 40 609-654 35-75 (420)
128 2yy5_A Tryptophanyl-tRNA synth 38.8 8.6 0.00029 44.9 1.0 38 610-653 8-45 (348)
129 3vgj_A Tyrosyl-tRNA synthetase 32.6 23 0.00079 41.7 3.4 39 610-653 60-98 (373)
130 3jxe_A Tryptophanyl-tRNA synth 31.7 22 0.00076 42.1 3.0 38 610-653 77-115 (392)
131 3p0j_A Tyrosyl-tRNA synthetase 31.0 25 0.00087 44.7 3.5 40 610-654 44-83 (690)
132 2pid_A Tyrosyl-tRNA synthetase 30.4 22 0.00076 41.6 2.7 39 610-654 50-89 (356)
133 2j5b_A Tyrosyl-tRNA synthetase 29.5 36 0.0012 39.7 4.2 39 610-653 44-82 (348)
134 2jan_A Tyrosyl-tRNA synthetase 28.3 40 0.0014 40.4 4.5 39 610-654 36-75 (432)
135 3sz3_A Tryptophanyl-tRNA synth 26.9 18 0.00062 42.0 1.1 38 610-653 10-47 (341)
136 1h3f_A Tyrosyl-tRNA synthetase 25.5 39 0.0013 40.6 3.7 40 610-655 41-81 (432)
137 3i05_A Tryptophanyl-tRNA synth 22.9 46 0.0016 39.5 3.5 39 609-653 81-121 (395)
138 3prh_A Tryptophanyl-tRNA synth 21.8 27 0.00091 41.4 1.2 38 610-653 39-76 (388)
139 3hv0_A Tryptophanyl-tRNA synth 21.7 52 0.0018 38.9 3.7 40 610-655 78-119 (393)
140 1gd2_E Transcription factor PA 21.6 1.4E+02 0.0047 26.6 5.4 40 4-53 27-66 (70)
141 2cyc_A Tyrosyl-tRNA synthetase 20.4 44 0.0015 39.3 2.7 38 610-653 37-75 (375)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=4.4e-101 Score=962.74 Aligned_cols=562 Identities=26% Similarity=0.388 Sum_probs=482.1
Q ss_pred cCHHHHHHHHHhhhhhhccccc-CCcceeEeecCcccccccccchhchHHHHHHHHhhcCCCCChhhHHHHHHHhhcccc
Q psy15414 475 MSVRDYLSDVFTHAVQVAFPEL-GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSEL 553 (1458)
Q Consensus 475 ~~l~~~L~ell~dAi~~a~~~~-~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~~~P~~IA~~i~~~i~~~l 553 (1458)
+++.+.+++.+.+++..++... ......++.|+++ +||||++|.++ +|.++ +||++||++|++. |
T Consensus 29 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~---~~GD~a~~~~~--~k~~~-----~~P~~iA~~i~~~----l 94 (607)
T 1f7u_A 29 VNIVDLMRNYISQELSKISGVDSSLIFPALEWTNTM---ERGDLLIPIPR--LRIKG-----ANPKDLAVQWAEK----F 94 (607)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSG---GGCSEEEEGGG--GCCTT-----CCHHHHHHHHHHT----C
T ss_pred ccHHHHHHHHHHHHHHHHhCCCccccccceeCCCCC---CCCchhhHHHH--HHhcC-----CCHHHHHHHHHHh----c
Confidence 3567788888888888764311 1122347788888 99999998765 25443 7999999999999 7
Q ss_pred cCCcccccceeEEEEeCCceEEEEeCHHHHHH-HHHHHHHcCCCCCC--CCCCceEEEEeeCCccCCccccchhhHHHHH
Q psy15414 554 ATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGE-QIKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 630 (1458)
Q Consensus 554 ~~~~~~~~~i~~vevagpGfiN~~l~~~~~~~-~l~~i~~~g~~~~~--~~~~~kV~VE~~SpNp~kplHIGHlRsaiIG 630 (1458)
+.+ +.|++++++|| ||||+|+++++.+ ++..++..+..|+. .+.+++|+||||||||||||||||+||+|||
T Consensus 95 ~~~----~~i~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiG 169 (607)
T 1f7u_A 95 PCG----DFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIG 169 (607)
T ss_dssp CCT----TTEEEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHH
T ss_pred ccc----CceeEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHH
Confidence 654 68999999996 9999999999996 56667777767753 4578899999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCC-CCCCChhHHHHHHHHhhhccCCc-------HHHHHHH
Q psy15414 631 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDED-------EIFKKRA 702 (1458)
Q Consensus 631 D~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~-~~~~~i~~l~~iy~~~~~~~~~~-------~~~~~~a 702 (1458)
|+|+|+|+++||+|+++|||||||+||++++.++. ++++.. ....|+.++.++|+++++.++++ +.+.++|
T Consensus 170 D~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~-~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A 248 (607)
T 1f7u_A 170 GFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFE-RYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKA 248 (607)
T ss_dssp HHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHH-HHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHH
T ss_pred HHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHH-HhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 99999999999999999999999999999998854 454321 11246888999999999999888 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-ccccccc-hhHHHHHHHHHHcCCeEeeCCcEEEEcCC
Q psy15414 703 YQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQ-KHMEQLVPYLEKKGLLELDDGRKIMWGED 780 (1458)
Q Consensus 703 ~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS~~~-~~v~~vi~~L~~kG~~ye~dGa~~~~~d~ 780 (1458)
++.+.+||.||++++++|+.|+++++++|+++|++|||.|+. .+||+|. +.++++++.|+++|++|+++|++|+++++
T Consensus 249 ~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~ 328 (607)
T 1f7u_A 249 REYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTK 328 (607)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGG
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecc
Confidence 999999999999999999999999999999999999998853 5789887 78999999999999999999999998865
Q ss_pred C--CCCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEe
Q psy15414 781 R--GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 858 (1458)
Q Consensus 781 ~--d~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~ 858 (1458)
. +..|+|++||||++||+|+|||||+||+..+++|++|||||++|++||+|++++++++|+ +++..|+|++||+|.
T Consensus 329 ~g~~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~--~~~~~~~Hv~fg~v~ 406 (607)
T 1f7u_A 329 FNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGF--EWAKDLQHVNFGMVQ 406 (607)
T ss_dssp TCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTC--GGGGGEEEECCCCEE
T ss_pred cCCCCCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCC--CcCcEEEEecccccc
Confidence 4 212489999999999999999999999987899999999999999999999999999998 356689999999984
Q ss_pred cCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHh
Q psy15414 859 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 938 (1458)
Q Consensus 859 ~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~ 938 (1458)
|||||+||+|+++||++++..+|.+.+.+ .++.....++.+++++.||+++|||++|+.+++++++|||+++++
T Consensus 407 -----kMSkR~G~~v~L~dLlde~~~~a~~~~~~-~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~ 480 (607)
T 1f7u_A 407 -----GMSTRKGTVVFLDNILEETKEKMHEVMKK-NENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLS 480 (607)
T ss_dssp -----SCCGGGTCCCBHHHHHHHHHHHHHHHHHT-CHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHC
T ss_pred -----cccCCCCCcccHHHHHHHHHHHHHHHHHh-CcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHH
Confidence 59999999999999999999888765542 211001135678899999999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHHh-CCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy15414 939 DRGNTAVYLLYAYTRIASIARTA-GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI 1017 (1458)
Q Consensus 939 ~n~n~g~ylqYa~aRi~SIlrK~-~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~L 1017 (1458)
+++||||||||+|+|+|||+||+ +.....+ ...+...+.++.|++|+..|.+||+++.+++++++||.+|.||++|
T Consensus 481 ~~g~t~pylqYa~aRi~SIlrka~~~~~~~~---~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~L 557 (607)
T 1f7u_A 481 FEGDTGPYLQYAHSRLRSVERNASGITQEKW---INADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKL 557 (607)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHTTTSCHHHH---TTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHhcCCCcccc---cccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999998 3221111 0111223568999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhh
Q psy15414 1018 STAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1018 A~~fN~fy~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
|+.||+||+.||||..+ ++++.+||+||.+|++||++||+||||++|++|
T Consensus 558 a~~fn~fY~~~~Vl~~~-----~~~~~aRL~L~~a~~~vL~~gL~LLGI~~perM 607 (607)
T 1f7u_A 558 THQVSSCYDVLWVAGQT-----EELATARLALYGAARQVLYNGMRLLGLTPVERM 607 (607)
T ss_dssp HHHHHHHHHHCCSTTSC-----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred HHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 99999999999998543 245789999999999999999999999999998
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.2e-97 Score=938.68 Aligned_cols=562 Identities=23% Similarity=0.349 Sum_probs=487.2
Q ss_pred cCHHHHHHHHHhhhhhhcccccCCcceeEeecCcccccccccchhchHHHHHHHHhhcCCCCChhhHHHHHHHhhccccc
Q psy15414 475 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 554 (1458)
Q Consensus 475 ~~l~~~L~ell~dAi~~a~~~~~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~~~P~~IA~~i~~~i~~~l~ 554 (1458)
+.+.+.+.+.+.+++....... ...+.++.|+++ +||||+||+||.|||.++ ++|++||++|++. |+
T Consensus 3 ~~~~~~i~~~~~~a~~~~~~~~-~~~~~v~~~~~~---~~GD~~~n~a~~lak~~~-----~~P~~iA~~i~~~----l~ 69 (629)
T 2zue_A 3 MEIRESVKERIEEIIKEIAPQW-EGEIELKETPDP---KLGDFGTPIAFKLAKLLK-----RPPIEIAEKIVEK----LK 69 (629)
T ss_dssp CTTHHHHHHHHHHHHHHHCTTC-CCCCCCEECSSG---GGCSEEECHHHHHHHHHT-----SCHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHHHHHHhcCccc-cccceeeCCCCC---CCCceeHHHHHHHHHHcC-----CCHHHHHHHHHHH----hh
Confidence 3556777778888877653221 224557888888 999999999999999997 8999999999999 65
Q ss_pred C--CcccccceeEEEEeCCceEEEEeCHH-HHHHHHHHHHHcCCCCCC--CCCCceEEEEeeCCccCCccccchhhHHHH
Q psy15414 555 T--NPSLAKVIDKIEVAKPGFVNVFLSRV-YAGEQIKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLRSTII 629 (1458)
Q Consensus 555 ~--~~~~~~~i~~vevagpGfiN~~l~~~-~~~~~l~~i~~~g~~~~~--~~~~~kV~VE~~SpNp~kplHIGHlRsaiI 629 (1458)
. + +.|++|+|+| |||||+|+++ ++..++..++..|..|+. .+++++|+||||||||+|||||||+||+||
T Consensus 70 ~~~~----~~i~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~ii 144 (629)
T 2zue_A 70 LNLP----EGIKDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAIL 144 (629)
T ss_dssp TSCC----TTEEEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHH
T ss_pred hccC----CCeEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHH
Confidence 4 3 6799999999 9999999999 555666778777777753 457889999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCC-----------CCCCCh-hHHHHHHHHhhhccCCcHH
Q psy15414 630 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-----------TKSPPI-ADLQAFYKESKKRFDEDEI 697 (1458)
Q Consensus 630 GD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~-----------~~~~~i-~~l~~iy~~~~~~~~~~~~ 697 (1458)
||+|+|+|+++||+|+++|||||||+||++++.++.. ++... ...+++ .++.++|+++.+.++.+|+
T Consensus 145 gD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~ 223 (629)
T 2zue_A 145 GDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLR-LKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPE 223 (629)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHH-hCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999999987653 22110 023466 5568899999999989999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-cccccc--chhHHHHHHHHHHcCCeE-----e
Q psy15414 698 FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFY--QKHMEQLVPYLEKKGLLE-----L 769 (1458)
Q Consensus 698 ~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS~~--~~~v~~vi~~L~~kG~~y-----e 769 (1458)
|++++++.+.++|+|| .+|+.+++.++++|+++|++|||+|+. .+||+| .+.++++++.|+++|++| +
T Consensus 224 ~~~~~~~~~~~~e~gd----~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge 299 (629)
T 2zue_A 224 LENEIRDIMKKLESGE----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGK 299 (629)
T ss_dssp GHHHHHHHHHHHHHSS----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSST
T ss_pred HHHHHHHHHHhccccc----HHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCC
Confidence 9999999999999998 689999999999999999999998853 468887 789999999999999999 8
Q ss_pred eCCcEEEEcCCCC-CCC---cEEEcCCCCccCCCcchHHHHHH---------hhhc-------------------CCCeE
Q psy15414 770 DDGRKIMWGEDRG-SIP---MTIVKSDGGFTYDTSDLAAIRQR---------IEEE-------------------KADWI 817 (1458)
Q Consensus 770 ~dGa~~~~~d~~d-~~~---~vL~ksDGt~tY~trDiA~~~~k---------~~~~-------------------~~d~i 817 (1458)
.+|++|+++++.. ..+ +|++||||++||+++|+|||+|| ...+ ++|++
T Consensus 300 ~~Ga~~v~~~~~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~ 379 (629)
T 2zue_A 300 YRGAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIV 379 (629)
T ss_dssp TTTCEEEECTTTCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEE
T ss_pred cCCcEEEECcccCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcE
Confidence 8999999876532 123 78999999999999999999995 5434 89999
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCC-cceEEEEEeEEEecCCCcccccccC--CccchHHHHHHHHHHHHHHHhhcC
Q psy15414 818 VYVTDLGQGVHFRLLEECAKKAGILNPN-KTRMDFVGFGVVLGEDRKKFKTRSG--DTVKLSELLDEGLRRSLDKLKDKN 894 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~alG~~~~~-~~~~~H~~fg~V~~~~G~KMSKR~G--nvI~l~DLLde~~~~a~~~~~~~~ 894 (1458)
|||||++|++||+|++++++++|+ ++ +.+|.|+.||+|++ +|+|||||+| |+|+|+||++++.++|.+.+.+++
T Consensus 380 IyV~g~~q~~~~~~l~~~l~~lG~--~~~~~~~~h~~~g~V~~-~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~ 456 (629)
T 2zue_A 380 INVIGAEQKHPQLAIKYALQLLGF--EDAAANLYHLAYEHVER-PEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKN 456 (629)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTC--HHHHHTEEEEEECCEEB-TTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCcHhhHHHHHHHHHHHcCC--CCCCCeEEEEEeeeEEc-CCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998 33 45799999999987 5679999999 999999999999999999998876
Q ss_pred CCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcc----h-hh
Q psy15414 895 RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE----D-LR 969 (1458)
Q Consensus 895 ~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~----~-i~ 969 (1458)
+ ++++++.+++|+.+|++|+||++|+.++.++++|||+.++++++|++|||||+|+|+|||++|++.... . ++
T Consensus 457 ~--~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~ 534 (629)
T 2zue_A 457 P--ALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLF 534 (629)
T ss_dssp T--TSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred c--ccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 5 589999999999999999999999999999999999999999999999999999999999999742210 0 01
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhccccccccccccccchhHHHHH
Q psy15414 970 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1049 (1458)
Q Consensus 970 ~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~vL~k~~~~~~~~~~~aRL~L 1049 (1458)
.. .+ ..+.++.|++|+..+.+||+++.+++++++||.+|.||++||+.||+||+.||||.++ +++..+||+|
T Consensus 535 ~~--~~-~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~~vl~~~-----~~~~~~RL~L 606 (629)
T 2zue_A 535 KN--AD-FTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVLKAE-----EGVREARLLL 606 (629)
T ss_dssp HH--CC-CSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHCCSTTSC-----TTHHHHHHHH
T ss_pred cc--cc-ccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCC-----hHHHHHHHHH
Confidence 11 11 2355789999999999999999999999999999999999999999999999998653 2357899999
Q ss_pred HHHHHHHHHHHhhhcccccchhh
Q psy15414 1050 AEATAKVMKKCFDILNIRTAIAE 1072 (1458)
Q Consensus 1050 ~~av~~VL~~gL~LLGI~~~e~m 1072 (1458)
|.+|++||++||+||||++|++|
T Consensus 607 ~~a~~~vL~~gL~lLGI~ape~M 629 (629)
T 2zue_A 607 VMAVEQVLKNALYLMGIEAPERM 629 (629)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHHHHHHHHHHcCCCccccC
Confidence 99999999999999999999998
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=3.3e-90 Score=869.03 Aligned_cols=541 Identities=23% Similarity=0.291 Sum_probs=459.5
Q ss_pred HHHHHHHHhhhhhhcccccCCcceeEeecCcccccccccchhchHHHHHHHHhhcCCCCChhhHHHHHHHhhcccccCCc
Q psy15414 478 RDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 557 (1458)
Q Consensus 478 ~~~L~ell~dAi~~a~~~~~~~~v~v~~~~np~~~~~gDys~n~A~~Lak~l~~~g~~~~P~~IA~~i~~~i~~~l~~~~ 557 (1458)
.+.+.+.+.+++...... ..+.++.|+++ +||||++| +|.|||.++ ++|++||++|++. |+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~---~~gD~~~~-~~~lak~~~-----~~P~~iA~~i~~~----l~~~- 65 (592)
T 1iq0_A 3 RRALEEAIAQALKEMGVP---VRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQAIAQELKDR----LPLP- 65 (592)
T ss_dssp HHHHHHHHHHHHHTTSCC---CCCCCEECSTT---SSCSEEEE-CSHHHHHTT-----SCHHHHHHHHHHT----CCCC-
T ss_pred HHHHHHHHHHHHHhcCCC---ccceeeCCCCC---CCCcchhh-HHHHHHHcC-----CCHHHHHHHHHHh----cccc-
Confidence 455666666666654211 23457788888 99999999 599999987 8999999999999 7644
Q ss_pred ccccceeEEEEeCCceEEEEeCHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHH
Q psy15414 558 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL 636 (1458)
Q Consensus 558 ~~~~~i~~vevagpGfiN~~l~~~~~~~~-l~~i~~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRi 636 (1458)
+.|++++++| |||||+|+++++... +..++..+..|+ +|+||||||||+|||||||+||+|+||+|+|+
T Consensus 66 ---~~~~~~~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~g------~v~ve~~spn~~~~~HiGH~R~~iigD~laR~ 135 (592)
T 1iq0_A 66 ---EFVEEAVPVG-GYLNFRLRTEALLREALRPKAPFPRRPG------VVLVEHTSVNPNKELHVGHLRNIALGDAIARI 135 (592)
T ss_dssp ---TTEEEEEEET-TEEEEEECHHHHHHHHHSCCCCCCCEEE------EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHH
T ss_pred ---CcEEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcCcccC------eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHH
Confidence 6899999999 999999999965554 444433444442 89999999999999999999999999999999
Q ss_pred HHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhH
Q psy15414 637 LEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 716 (1458)
Q Consensus 637 l~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~ 716 (1458)
|+++||+|+++|||||||+||++++.++.....+..+..++..++.++|+++++.++++ +|.+++++.+.++|+|+ .
T Consensus 136 l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~-~~~~~a~~~~~~~e~g~--~ 212 (592)
T 1iq0_A 136 LAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYE-RLQPAIEEVLHALERGE--L 212 (592)
T ss_dssp HHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTG-GGHHHHHHHHHHHHTTT--T
T ss_pred HHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHhCCchH--H
Confidence 99999999999999999999999998876422222111245667889999999988887 88999999999999998 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCEEec-cccccc--chhHHHHHHHHHHcCCeE-----eeCCcEEEEcCCCC-CCC--
Q psy15414 717 KKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFY--QKHMEQLVPYLEKKGLLE-----LDDGRKIMWGEDRG-SIP-- 785 (1458)
Q Consensus 717 ~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS~~--~~~v~~vi~~L~~kG~~y-----e~dGa~~~~~d~~d-~~~-- 785 (1458)
+.+++.+++.|+++|++|||+|+. .+||.+ .+.++++++.|+++|++| +.+|++|++++... ..+
T Consensus 213 ----~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l~ 288 (592)
T 1iq0_A 213 ----REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDP 288 (592)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCC
T ss_pred ----HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCCC
Confidence 789999999999999999998853 467877 789999999999999999 88999999876532 123
Q ss_pred -cEEEcCCCCccCCCcchHHHHHH--------hhhc--------------------CCCeEEEEeeCCccccHHHHHHHH
Q psy15414 786 -MTIVKSDGGFTYDTSDLAAIRQR--------IEEE--------------------KADWIVYVTDLGQGVHFRLLEECA 836 (1458)
Q Consensus 786 -~vL~ksDGt~tY~trDiA~~~~k--------~~~~--------------------~~d~iIyVvg~dq~~hf~~l~~il 836 (1458)
+|++||||+++|+++|+|||+|| ...+ +++++|||||++|++||+++++++
T Consensus 289 ~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~ 368 (592)
T 1iq0_A 289 FFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAAL 368 (592)
T ss_dssp EEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHH
T ss_pred ceEEEecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHH
Confidence 78999999999999999999995 4434 899999999999999999999999
Q ss_pred HHcCCCCCC-cceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhh
Q psy15414 837 KKAGILNPN-KTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGC 915 (1458)
Q Consensus 837 ~alG~~~~~-~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~a 915 (1458)
+++|+ ++ +.+|.|+.||+|++ +|+|||||+||+|+++||++++.++|.+.+.++++ .++++| ++++.+|+++
T Consensus 369 ~alG~--~~~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~--~~~~~e--~~a~~vg~~a 441 (592)
T 1iq0_A 369 ALAGY--PALAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNP--DHPDKE--EAARMVALGA 441 (592)
T ss_dssp HHTTC--HHHHTTEEEEEECCEEE-TTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCT--TCSCHH--HHHHHHHHHH
T ss_pred HHcCC--CCCCCcEEEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCC--CCCcHH--HHHHhhcHHH
Confidence 99998 33 45799999999987 67899999999999999999999999999988765 455544 8999999999
Q ss_pred eeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHH
Q psy15414 916 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMN 995 (1458)
Q Consensus 916 lRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~ 995 (1458)
+|||+|+.++.++++|||++++++++++++|+||+|+|+|||++|++... .+ ...+.++.|++|+..+.+||
T Consensus 442 iRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~--~~------~~~l~~~~e~~L~~~l~~~~ 513 (592)
T 1iq0_A 442 IRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWG--AP------DLSQATPYERALALDLLDFE 513 (592)
T ss_dssp HHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCC--CC------CGGGCCHHHHHHHHHHTTHH
T ss_pred HHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccC--CC------ccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999985332 11 11244688999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhc-------cccccccccccccchhHHHHHHHHHHHHHHHHhhhccccc
Q psy15414 996 DVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC-------YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1068 (1458)
Q Consensus 996 ~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~-------~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~ 1068 (1458)
+++.+++++++||.+|.||++||+.||+||+.| +||.++ +++..+||+||.+|++||++||+||||++
T Consensus 514 ~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~-----~~~~~~RL~L~~a~~~vl~~~l~lLGi~~ 588 (592)
T 1iq0_A 514 EAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAP-----EGLRELRLSLVQSLQRTLATGLDLLGIPA 588 (592)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSC-----TTHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCC-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999 888543 23578999999999999999999999999
Q ss_pred chhh
Q psy15414 1069 AIAE 1072 (1458)
Q Consensus 1069 ~e~m 1072 (1458)
|++|
T Consensus 589 ~e~M 592 (592)
T 1iq0_A 589 PEVM 592 (592)
T ss_dssp CSCC
T ss_pred cccC
Confidence 9998
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=1.8e-79 Score=744.86 Aligned_cols=442 Identities=19% Similarity=0.267 Sum_probs=360.8
Q ss_pred EEeCHHHHHHHHHHHHHcCCCCCCC-CCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 576 VFLSRVYAGEQIKDIIVNGVQPPTL-NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 576 ~~l~~~~~~~~l~~i~~~g~~~~~~-~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
|+|+++++...+++++..|..|+.. .++++|+||||||||+|||||||+||++|||+|+|+++++||+|+|+|||||||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCCCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCCCCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 6899999999999999888777642 267899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCC-CCCCC--CChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHH
Q psy15414 655 TQFGMLIAHLQDKFPD-YLTKS--PPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR---FDPDYKKAWEMICDVSR 728 (1458)
Q Consensus 655 ~Qi~~l~~~~~~~~~~-~~~~~--~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~---gd~e~~~lw~~~~~~s~ 728 (1458)
+||++|+.++..+|.+ ..+.. .|-. .-..+.+.+.|++.+.+... +|++...+|++++++++
T Consensus 81 ~Q~g~l~~~~~~~y~~~~~~~~~~~p~~------------~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (464)
T 3fnr_A 81 NQIYLLGLSILLSVKESILHENVEYPEQ------------YYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKML 148 (464)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCCCCCSS------------CCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchh------------hcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHH
Confidence 9999999887544322 11110 0100 00112222333333322211 36666789999999999
Q ss_pred HHHHHHHHHhCCEEec-ccc-cccchhHHHHHHHHHHcCCeEeeCCcEEEEcCCCC-CCCcEEEcCCCCccCCCcchHHH
Q psy15414 729 RDFQKIYDRLNVTLTE-RGE-SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG-SIPMTIVKSDGGFTYDTSDLAAI 805 (1458)
Q Consensus 729 ~~f~~~y~~L~i~f~~-~ge-S~~~~~v~~vi~~L~~kG~~ye~dGa~~~~~d~~d-~~~~vL~ksDGt~tY~trDiA~~ 805 (1458)
++|+++|++|||.|+. .+| |+|. .++++++.|+++|++|++||++|++.++.. ..++||+||||++||+|+|||||
T Consensus 149 ~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y~t~DiA~~ 227 (464)
T 3fnr_A 149 VLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYLAADIVYH 227 (464)
T ss_dssp HHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceehhhHHHHHH
Confidence 9999999999999964 567 5666 999999999999999999999999775421 14589999999999999999999
Q ss_pred HHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEE-ecCCCc--ccccccCCccchHHHHHHH
Q psy15414 806 RQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV-LGEDRK--KFKTRSGDTVKLSELLDEG 882 (1458)
Q Consensus 806 ~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V-~~~~G~--KMSKR~GnvI~l~DLLde~ 882 (1458)
++|++ +++|++|||||+||++||++++++++++|+. | .++.|+.||+| ++.+|+ |||||+||+|+|+|+++++
T Consensus 228 ~~r~~-~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~-~--~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~ 303 (464)
T 3fnr_A 228 KDKMS-RGYGKCINIWGADHHGYIPRMKAAMEFLGFD-S--NNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEI 303 (464)
T ss_dssp HHHHT-SSCSEEEEEEEGGGGGGHHHHHHHHHTTTCC-G--GGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHH
T ss_pred HHHHH-cCCCeEEEEecCcHHHHHHHHHHHHHHcCCC-c--cceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhc
Confidence 99996 5899999999999999999999999999984 2 36789999998 456775 9999999999999999986
Q ss_pred HHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhh-hcCcHHHHHHHHHHHHHHHHHh
Q psy15414 883 LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD-RGNTAVYLLYAYTRIASIARTA 961 (1458)
Q Consensus 883 ~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~-n~n~g~ylqYa~aRi~SIlrK~ 961 (1458)
+ .+++||++++.++.+|++|||+.++++ |+|+++|+||+|+|+|||+||+
T Consensus 304 g-----------------------------~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~ 354 (464)
T 3fnr_A 304 G-----------------------------SDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKA 354 (464)
T ss_dssp C-----------------------------HHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred c-----------------------------HHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 4 357999999999999999999999986 4566679999999999999998
Q ss_pred CCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccccccc
Q psy15414 962 GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKT 1041 (1458)
Q Consensus 962 ~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~vL~k~~~~~~~~ 1041 (1458)
+.....++. .+...+.++ |++|+..+.+||+++.+++++++|+.+|.||++||+.||+||+.|||+..++ +
T Consensus 355 ~~~~~~~~~---~~~~~L~~~-e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~-----~ 425 (464)
T 3fnr_A 355 GKKIDDVMK---ADLQSLNQD-GVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSAN-----E 425 (464)
T ss_dssp TCCTTTSTT---CCCTTCCHH-HHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTT-----H
T ss_pred hccCCCccc---cChhhCChH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCH-----H
Confidence 543211111 122345545 9999999999999999999999999999999999999999999999985432 4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcccccchhhHH
Q psy15414 1042 VHTGRLLLAEATAKVMKKCFDILNIRTAIAEEE 1074 (1458)
Q Consensus 1042 ~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~ 1074 (1458)
++.+||+||.|| ||++||+||||+|||+|.-
T Consensus 426 ~~~aRL~L~~a~--vL~~gL~lLGi~ape~m~~ 456 (464)
T 3fnr_A 426 NDLLKLFSLVAL--SIKTAFSLMGIEAKNKMEH 456 (464)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHTTCCCCSCC--
T ss_pred HHHHHHHHHHHH--HHHHHHHhcCCCchHHhhh
Confidence 689999999999 9999999999999999983
No 5
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=4.3e-68 Score=664.91 Aligned_cols=382 Identities=25% Similarity=0.366 Sum_probs=320.5
Q ss_pred cccHHHHHHHHHHHHHHHhccccC-CCCcccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhh
Q psy15414 84 RMSVRDYLSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSE 162 (1458)
Q Consensus 84 ~~~~~~~l~~~~~~a~~~~~~~~~-~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~ 162 (1458)
.|++.+.+++.|.+++..++.... .....++.|+ +++||||+||+|| +|.+ ++||++||++|++.|
T Consensus 28 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~---~~~~GD~a~~~~~--~k~~-----~~~P~~iA~~i~~~l--- 94 (607)
T 1f7u_A 28 DVNIVDLMRNYISQELSKISGVDSSLIFPALEWTN---TMERGDLLIPIPR--LRIK-----GANPKDLAVQWAEKF--- 94 (607)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECS---SGGGCSEEEEGGG--GCCT-----TCCHHHHHHHHHHTC---
T ss_pred cccHHHHHHHHHHHHHHHHhCCCccccccceeCCC---CCCCCchhhHHHH--HHhc-----CCCHHHHHHHHHHhc---
Confidence 577888899999999988764210 0112345444 3589999998766 3655 789999999999865
Q ss_pred hccCCccccchheeeeeCCceeEEeeCHHHHHH-HHHHHHHcCCCCC--CCCCCcEEEEEecCCCCCCCccccchhhhhH
Q psy15414 163 LATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGE-QIKDIIVNGVQPP--TLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 239 (1458)
Q Consensus 163 l~~~~~~~~~i~~vevagpGfIN~~l~~~~~~~-~l~~i~~~g~~~~--~~~~~~~V~VEfsSpN~akplHvGHlRstiI 239 (1458)
+.+ +.|++++++|| ||||+|++.++.+ ++..++..|..++ ..+++++|+||||||||||||||||+|||||
T Consensus 95 -~~~----~~i~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~ii 168 (607)
T 1f7u_A 95 -PCG----DFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTII 168 (607)
T ss_dssp -CCT----TTEEEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHH
T ss_pred -ccc----CceeEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHH
Confidence 222 36899999995 9999999999986 6677776665543 2356789999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCC-CCCCCChhhHHHHHHHhhhhcCCC-------HHHHHH
Q psy15414 240 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDED-------EIFKKR 311 (1458)
Q Consensus 240 Gdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~-~~~~~~i~~l~~~y~~~~~~~~~~-------~~~~~~ 311 (1458)
||+|||+|+++||+|+|+|||||||+|||+|+.++.. +++. .....|+.+|.++|+++++.++++ +.+.++
T Consensus 169 GD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~-~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~ 247 (607)
T 1f7u_A 169 GGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFER-YGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGK 247 (607)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHH-HCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHH
T ss_pred HHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHH-hCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence 9999999999999999999999999999999999653 4421 112346889999999999999888 889999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc-cchhhhh-hhHHHHHHHHHHCCCeeecCCCeEEecC
Q psy15414 312 AYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQ-KHMEQLVPYLEKKGLLELDDGRKIMWGE 389 (1458)
Q Consensus 312 a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~-~gEs~y~-~~~~~vv~~L~~kg~~~~~dGa~~~~~~ 389 (1458)
|++.+++||+||+++.++|+.+|+++.++|+++|++|||+||. .|||+|. +.++++++.|+++|+++++||++|++.+
T Consensus 248 A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~ 327 (607)
T 1f7u_A 248 AREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLT 327 (607)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGG
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEec
Confidence 9999999999999999999999999999999999999999985 7999997 8999999999999999999999999876
Q ss_pred CC--CCCceEEEecCCccccchhhHHHHHHHhhhcCCCEEEEecCC--chHHHHHHHHHHHHHHcCCCCCCC--cccccc
Q psy15414 390 DR--GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDH--RSYHQVLQAIAEEEKKQGISSSSS--SQTKGT 463 (1458)
Q Consensus 390 ~~--~~~~~vl~kSDG~~tY~t~DiA~~~~r~~~~~~d~iIyv~D~--~~~~~~~~a~~~a~~~~g~~~~~~--~~~~G~ 463 (1458)
+. +..|+|++|||||+||+|+|||||+||++++++|++|||+|. +++.+++++++++ +|+++... +..+|+
T Consensus 328 ~~g~~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~---lG~~~~~~~~Hv~fg~ 404 (607)
T 1f7u_A 328 KFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQ---MGFEWAKDLQHVNFGM 404 (607)
T ss_dssp GTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHH---TTCGGGGGEEEECCCC
T ss_pred ccCCCCCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHH---cCCCcCcEEEEecccc
Confidence 53 333699999999999999999999999988899999998654 4555667666654 89965433 446888
Q ss_pred ccccCCCcccccCHHHHHHHHHhhh
Q psy15414 464 AKKMNVPVRDRMSVRDYLSDVFTHA 488 (1458)
Q Consensus 464 ~~kmskr~gt~~~l~~~L~ell~dA 488 (1458)
+.+||||.|+++++.+++++...+|
T Consensus 405 v~kMSkR~G~~v~L~dLlde~~~~a 429 (607)
T 1f7u_A 405 VQGMSTRKGTVVFLDNILEETKEKM 429 (607)
T ss_dssp EESCCGGGTCCCBHHHHHHHHHHHH
T ss_pred cccccCCCCCcccHHHHHHHHHHHH
Confidence 8999999999999999999888766
No 6
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.3e-64 Score=638.12 Aligned_cols=376 Identities=22% Similarity=0.311 Sum_probs=309.5
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCCCcccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhhhc
Q psy15414 85 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 164 (1458)
Q Consensus 85 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~l~ 164 (1458)
|++++.+.+.+.+++..+.... ...+.++.|+ +++|||||||+||.|||.+ +++|++||++|++.| +
T Consensus 3 ~~~~~~i~~~~~~a~~~~~~~~-~~~~~v~~~~---~~~~GD~~~n~a~~lak~~-----~~~P~~iA~~i~~~l----~ 69 (629)
T 2zue_A 3 MEIRESVKERIEEIIKEIAPQW-EGEIELKETP---DPKLGDFGTPIAFKLAKLL-----KRPPIEIAEKIVEKL----K 69 (629)
T ss_dssp CTTHHHHHHHHHHHHHHHCTTC-CCCCCCEECS---SGGGCSEEECHHHHHHHHH-----TSCHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHhcCccc-cccceeeCCC---CCCCCceeHHHHHHHHHHc-----CCCHHHHHHHHHHHh----h
Confidence 4577788888888887654321 1223355554 3589999999999999998 799999999999886 2
Q ss_pred cCCccccchheeeeeCCceeEEeeCHH-HHHHHHHHHHHcCCCCC--CCCCCcEEEEEecCCCCCCCccccchhhhhHHH
Q psy15414 165 TNPSLAKVIDKIEVAKPGFVNVFLSRV-YAGEQIKDIIVNGVQPP--TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 241 (1458)
Q Consensus 165 ~~~~~~~~i~~vevagpGfIN~~l~~~-~~~~~l~~i~~~g~~~~--~~~~~~~V~VEfsSpN~akplHvGHlRstiIGd 241 (1458)
.. ..+.|++++|+| |||||+|++. ++..++..++..|..++ ..+++++|+||||||||+|||||||+|||||||
T Consensus 70 ~~--~~~~i~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD 146 (629)
T 2zue_A 70 LN--LPEGIKDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGD 146 (629)
T ss_dssp TS--CCTTEEEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHH
T ss_pred hc--cCCCeEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHH
Confidence 20 013689999999 9999999999 55567788887766544 345678999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCC----------CCCCCh-hhHHHHHHHhhhhcCCCHHHHH
Q psy15414 242 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL----------TKSPPI-ADLQAFYKESKKRFDEDEIFKK 310 (1458)
Q Consensus 242 slaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~----------~~~~~i-~~l~~~y~~~~~~~~~~~~~~~ 310 (1458)
+|||+|+++||+|+++|||||||+|||+|+.++....++.. .+.+++ .++.++|++++++++++|+|++
T Consensus 147 ~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~ 226 (629)
T 2zue_A 147 VMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELEN 226 (629)
T ss_dssp HHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHH
Confidence 99999999999999999999999999999988764222110 023466 6689999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc-cchhhh--hhhHHHHHHHHHHCCCee-----ecCC
Q psy15414 311 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFY--QKHMEQLVPYLEKKGLLE-----LDDG 382 (1458)
Q Consensus 311 ~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~-~gEs~y--~~~~~~vv~~L~~kg~~~-----~~dG 382 (1458)
++++.++++|+|| .+|+.+|+++.++|+++|++|||+||. .+||+| .+.++++++.|+++|+++ +++|
T Consensus 227 ~~~~~~~~~e~gd----~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~G 302 (629)
T 2zue_A 227 EIRDIMKKLESGE----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRG 302 (629)
T ss_dssp HHHHHHHHHHHSS----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTT
T ss_pred HHHHHHHhccccc----HHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCCcCC
Confidence 9999999999998 899999999999999999999999985 699999 789999999999999999 8999
Q ss_pred CeEEecCCCC-CCc---eEEEecCCccccchhhHHHHHH---------Hhhhc-------------------CCCEEEEe
Q psy15414 383 RKIMWGEDRG-SIP---MTIVKSDGGFTYDTSDLAAIRQ---------RIEEE-------------------KADWIVYV 430 (1458)
Q Consensus 383 a~~~~~~~~~-~~~---~vl~kSDG~~tY~t~DiA~~~~---------r~~~~-------------------~~d~iIyv 430 (1458)
++|++.++.+ ..+ +|++||||++||+|+|||||+| |.+.+ ++|++|||
T Consensus 303 a~~v~~~~~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV 382 (629)
T 2zue_A 303 AFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINV 382 (629)
T ss_dssp CEEEECTTTCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEE
T ss_pred cEEEECcccCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEE
Confidence 9998876532 223 8999999999999999999999 46655 89999998
Q ss_pred c--CCchHHHHHHHHHHHHHHcCCCC-CCC--ccccccc----cccCCCcc--cccCHHHHHHH
Q psy15414 431 T--DHRSYHQVLQAIAEEEKKQGISS-SSS--SQTKGTA----KKMNVPVR--DRMSVRDYLSD 483 (1458)
Q Consensus 431 ~--D~~~~~~~~~a~~~a~~~~g~~~-~~~--~~~~G~~----~kmskr~g--t~~~l~~~L~e 483 (1458)
+ ||+++.+++++++++ +|+++ ... ++.+|.+ +|||||.| +++++.+++++
T Consensus 383 ~g~~q~~~~~~l~~~l~~---lG~~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e 443 (629)
T 2zue_A 383 IGAEQKHPQLAIKYALQL---LGFEDAAANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQE 443 (629)
T ss_dssp EEGGGHHHHHHHHHHHHH---TTCHHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHH
T ss_pred EeCcHhhHHHHHHHHHHH---cCCCCCCCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHH
Confidence 5 455666667666654 89965 221 3334543 59999999 99999999999
No 7
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=1.3e-58 Score=582.16 Aligned_cols=365 Identities=22% Similarity=0.207 Sum_probs=291.5
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCcccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhhhccC
Q psy15414 87 VRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 166 (1458)
Q Consensus 87 ~~~~l~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~l~~~ 166 (1458)
+++.+.+.+.+++..+.. ...+.++.|+ +++|||||||+ |.|||.+ +++|++||++|++.| +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~~~v~~~~---~~~~gD~~~~~-~~lak~~-----~~~P~~iA~~i~~~l----~~~ 65 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGV---PVRLKVARAP---KDKPGDYGVPL-FALAKEL-----RKPPQAIAQELKDRL----PLP 65 (592)
T ss_dssp CHHHHHHHHHHHHHTTSC---CCCCCCEECS---TTSSCSEEEEC-SHHHHHT-----TSCHHHHHHHHHHTC----CCC
T ss_pred hHHHHHHHHHHHHHhcCC---CccceeeCCC---CCCCCcchhhH-HHHHHHc-----CCCHHHHHHHHHHhc----ccc
Confidence 345666777777765421 1223355554 36899999995 9999998 799999999999865 222
Q ss_pred CccccchheeeeeCCceeEEeeCHHHHH-HHHHHHHHcCCCCCCCCCCcEEEEEecCCCCCCCccccchhhhhHHHHHHH
Q psy15414 167 PSLAKVIDKIEVAKPGFVNVFLSRVYAG-EQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 245 (1458)
Q Consensus 167 ~~~~~~i~~vevagpGfIN~~l~~~~~~-~~l~~i~~~g~~~~~~~~~~~V~VEfsSpN~akplHvGHlRstiIGdslar 245 (1458)
+.|++++|+| |||||+|++.++. .++..++..|..++ +|+||||||||+|||||||+|||||||+|||
T Consensus 66 ----~~~~~~~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~g------~v~ve~~spn~~~~~HiGH~R~~iigD~laR 134 (592)
T 1iq0_A 66 ----EFVEEAVPVG-GYLNFRLRTEALLREALRPKAPFPRRPG------VVLVEHTSVNPNKELHVGHLRNIALGDAIAR 134 (592)
T ss_dssp ----TTEEEEEEET-TEEEEEECHHHHHHHHHSCCCCCCCEEE------EEEEECCCCCTTSCCBHHHHHHHHHHHHHHH
T ss_pred ----CcEEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcCcccC------eEEEEeeCCCCCCCCcchHHHHHHHHHHHHH
Confidence 3689999999 9999999999654 45444444444432 7999999999999999999999999999999
Q ss_pred HHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChH
Q psy15414 246 LLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 325 (1458)
Q Consensus 246 il~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~ 325 (1458)
+|+++||+|+++|||||||+|||+|+.++....++.....+++.++.++|+++++.++++ .|++++++.++++|+|+
T Consensus 135 ~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~-~~~~~a~~~~~~~e~g~-- 211 (592)
T 1iq0_A 135 ILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYE-RLQPAIEEVLHALERGE-- 211 (592)
T ss_dssp HHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTG-GGHHHHHHHHHHHHTTT--
T ss_pred HHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHhCCchH--
Confidence 999999999999999999999999999886433332212246778999999999999888 88999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceecc-cchhhh--hhhHHHHHHHHHHCCCee-----ecCCCeEEecCCCC-CCc-
Q psy15414 326 YKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFY--QKHMEQLVPYLEKKGLLE-----LDDGRKIMWGEDRG-SIP- 395 (1458)
Q Consensus 326 ~~~~w~~~~~~s~~~~~~~y~rl~i~f~~-~gEs~y--~~~~~~vv~~L~~kg~~~-----~~dGa~~~~~~~~~-~~~- 395 (1458)
++.+|+.+.++|+++|++|||+||. .+||.| .+.++++++.|+++|+++ +++|++|++.++.+ ..+
T Consensus 212 ----~~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l 287 (592)
T 1iq0_A 212 ----LREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLED 287 (592)
T ss_dssp ----THHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSC
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCC
Confidence 1899999999999999999999985 689988 789999999999999999 89999998776532 223
Q ss_pred --eEEEecCCccccchhhHHHHHH--------Hhhhc--------------------CCCEEEEe--cCCchHHHHHHHH
Q psy15414 396 --MTIVKSDGGFTYDTSDLAAIRQ--------RIEEE--------------------KADWIVYV--TDHRSYHQVLQAI 443 (1458)
Q Consensus 396 --~vl~kSDG~~tY~t~DiA~~~~--------r~~~~--------------------~~d~iIyv--~D~~~~~~~~~a~ 443 (1458)
+|++||||++||+|+|+|||++ |.+.+ ++|++||| .||.++.++++++
T Consensus 288 ~~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~ 367 (592)
T 1iq0_A 288 PFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAA 367 (592)
T ss_dssp CEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHH
T ss_pred CceEEEecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHH
Confidence 8999999999999999999999 46544 89999997 5677777777777
Q ss_pred HHHHHHcCCCC-CCC--ccccccc----cccCCCcccccCHHHHHHHHHhhh
Q psy15414 444 AEEEKKQGISS-SSS--SQTKGTA----KKMNVPVRDRMSVRDYLSDVFTHA 488 (1458)
Q Consensus 444 ~~a~~~~g~~~-~~~--~~~~G~~----~kmskr~gt~~~l~~~L~ell~dA 488 (1458)
+++ +|+++ ... ++.+|.+ .|||||.|+++++.+.+++....+
T Consensus 368 ~~a---lG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~ 416 (592)
T 1iq0_A 368 LAL---AGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRA 416 (592)
T ss_dssp HHH---TTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHH
T ss_pred HHH---cCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHH
Confidence 755 89865 222 3334543 599999999999999998854433
No 8
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=1.9e-55 Score=534.31 Aligned_cols=286 Identities=20% Similarity=0.274 Sum_probs=234.6
Q ss_pred EeeCHHHHHHHHHHHHHcCCCCCCC-CCCcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchh
Q psy15414 186 VFLSRVYAGEQIKDIIVNGVQPPTL-NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 264 (1458)
Q Consensus 186 ~~l~~~~~~~~l~~i~~~g~~~~~~-~~~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G 264 (1458)
|+|+++++...+.+|+..|..++.. .++++|+||||||||||||||||+|||+|||+|||+++++||+|+|+|||||||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCCCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCCCCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 6899999999999999887665421 167899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcC-----------CCCCCCCCChhhHHH-HHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy15414 265 TQFGMLIAHLQDKF-----------PDYLTKSPPIADLQA-FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEM 332 (1458)
Q Consensus 265 ~Q~~~l~~~~~~~~-----------~~~~~~~~~i~~l~~-~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~ 332 (1458)
+|||||+.++..+| |+..+.++++.++++ ++.+....+.. |++...+|+.
T Consensus 81 ~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~ 142 (464)
T 3fnr_A 81 NQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFS------------------EENIPSLADW 142 (464)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCS------------------GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhcC------------------cHHHHHHHHH
Confidence 99999998874332 444444445556543 33333222221 5566789999
Q ss_pred HHHHHHHHHHHHHHHhcceecc-cch-hhhhhhHHHHHHHHHHCCCeeecCCCeEEecCCC-CCCceEEEecCCccccch
Q psy15414 333 ICDVSRRDFQKIYDRLNVTLTE-RGE-SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDR-GSIPMTIVKSDGGFTYDT 409 (1458)
Q Consensus 333 ~~~~s~~~~~~~y~rl~i~f~~-~gE-s~y~~~~~~vv~~L~~kg~~~~~dGa~~~~~~~~-~~~~~vl~kSDG~~tY~t 409 (1458)
++++++++++++|++|||+||. .|| |+|+ .+++++++|+++|+++++|||+|++.++. +..|+||+|||||+||+|
T Consensus 143 ~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y~t 221 (464)
T 3fnr_A 143 AKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYLA 221 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceehhh
Confidence 9999999999999999999995 798 7777 99999999999999999999999987653 335799999999999999
Q ss_pred hhHHHHHHHhhhcCCCEEEEe--cCCchHHHHHHHHHHHHHHcCCCCCCC-cc--------ccccccccCCCcccccCHH
Q psy15414 410 SDLAAIRQRIEEEKADWIVYV--TDHRSYHQVLQAIAEEEKKQGISSSSS-SQ--------TKGTAKKMNVPVRDRMSVR 478 (1458)
Q Consensus 410 ~DiA~~~~r~~~~~~d~iIyv--~D~~~~~~~~~a~~~a~~~~g~~~~~~-~~--------~~G~~~kmskr~gt~~~l~ 478 (1458)
+|||||++|+++ +||++||| +||+++.+++++++++ +|+++... ++ ++|++.|||||.||.+++.
T Consensus 222 ~DiA~~~~r~~~-~~d~~Iyv~G~dq~~~f~~l~~~l~~---lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~ 297 (464)
T 3fnr_A 222 ADIVYHKDKMSR-GYGKCINIWGADHHGYIPRMKAAMEF---LGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMS 297 (464)
T ss_dssp HHHHHHHHHHTS-SCSEEEEEEEGGGGGGHHHHHHHHHT---TTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHH
T ss_pred HHHHHHHHHHHc-CCCeEEEEecCcHHHHHHHHHHHHHH---cCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHH
Confidence 999999999975 89999996 6888887778777755 89976542 11 3677779999999999999
Q ss_pred HHHHHHHhhhhhhccc
Q psy15414 479 DYLSDVFTHAVQVAFP 494 (1458)
Q Consensus 479 ~~L~ell~dAi~~a~~ 494 (1458)
+.+++...+|++....
T Consensus 298 dll~~~g~dalRy~~l 313 (464)
T 3fnr_A 298 DVVDEIGSDALRYIFL 313 (464)
T ss_dssp HHHHHHCHHHHHHHTT
T ss_pred HHHhhccHHHHHHHHH
Confidence 9999999999998754
No 9
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1e-36 Score=380.93 Aligned_cols=377 Identities=13% Similarity=0.116 Sum_probs=255.7
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
++++.|....|+|+||+||||+|++++||+|+|+++..||+|.++++++|+|.+|...+...
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~------------------ 85 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE------------------ 85 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH------------------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc------------------
Confidence 45777777777788999999999999999999999999999999999999999885432111
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVP 759 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~ 759 (1458)
..+ ++.+++.+.+.|.+++++|||.++. ..+..|.+.++++++
T Consensus 86 ----------------------------g~~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~ 131 (536)
T 4dlp_A 86 ----------------------------GIT------PRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQ 131 (536)
T ss_dssp ----------------------------TSC------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred ----------------------------CCC------HHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHH
Confidence 001 2345777888999999999997643 223357889999999
Q ss_pred HHHHcCCeEeeCCcEEEEcC------CC----------------------------------------------------
Q psy15414 760 YLEKKGLLELDDGRKIMWGE------DR---------------------------------------------------- 781 (1458)
Q Consensus 760 ~L~~kG~~ye~dGa~~~~~d------~~---------------------------------------------------- 781 (1458)
+|.++|++|+.++..++... +.
T Consensus 132 ~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~ 211 (536)
T 4dlp_A 132 AMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAE 211 (536)
T ss_dssp HHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHH
T ss_pred HHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHH
Confidence 99999999988766543210 00
Q ss_pred ----------CC-CCcEEEcCC-----------CC--ccCCCcchHHHH---H-----HhhhcCCCeEEEEeeCCccccH
Q psy15414 782 ----------GS-IPMTIVKSD-----------GG--FTYDTSDLAAIR---Q-----RIEEEKADWIVYVTDLGQGVHF 829 (1458)
Q Consensus 782 ----------d~-~~~vL~ksD-----------Gt--~tY~trDiA~~~---~-----k~~~~~~d~iIyVvg~dq~~hf 829 (1458)
++ .+..+.|++ +. ++|+..+++|.- | +++. .+...++|+|.||.. |
T Consensus 212 ~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~-~~p~dv~~~G~D~~~-f 289 (536)
T 4dlp_A 212 RRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWA-YWPANAHIIGKDISR-F 289 (536)
T ss_dssp HHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGG-GCSCSEEEEEGGGHH-H
T ss_pred HHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHh-hCCcceEEeechHHH-H
Confidence 00 123344441 12 223333344421 1 1211 122349999999886 6
Q ss_pred HHHH--HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHH
Q psy15414 830 RLLE--ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEA 907 (1458)
Q Consensus 830 ~~l~--~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ 907 (1458)
..++ +++.++|+..| ..+.+++| |+. +|+|||||+||+|+|.|++++++
T Consensus 290 h~~~~~a~l~a~g~~~~--~~v~~hg~--v~~-~G~KMSKS~GNvi~p~d~i~~~G------------------------ 340 (536)
T 4dlp_A 290 HAVYWPAFLMSAQLPLP--KRVFAHGF--LFN-RGEKMSKSVGNVIDPFELVERYG------------------------ 340 (536)
T ss_dssp HHTHHHHHHHHTTCCCC--SCEEEECC--EEC-------------CCHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHCCCCCC--cEEEeeee--Eee-CCceecccCCCCCCHHHHHHHcC------------------------
Confidence 5555 77788897432 34544455 655 89999999999999999999874
Q ss_pred HHhhhhhheeeeeec-CCCCCccccchhhHHh-hhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHH
Q psy15414 908 QQAVAYGCIKYADLS-HNRNLDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEF 985 (1458)
Q Consensus 908 ad~v~~~alRy~lLs-~~~~~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~ 985 (1458)
.+++||++++ ....+|++||++.+.+ .|.+..+.++|+++|+++++.++.... +|. ... .++.++
T Consensus 341 -----aDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~--~p~-----~~~-~~~~d~ 407 (536)
T 4dlp_A 341 -----LDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGK--VPQ-----PGA-FSEADK 407 (536)
T ss_dssp -----HHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB--CCC-----CCC-CCHHHH
T ss_pred -----cHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCC-----ccc-CCHHHH
Confidence 3569999999 5678999999999987 466777888999999999998864221 221 112 257889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc--ccccccccccccchhHHHHHHHHHHHHHHHHhhh
Q psy15414 986 ALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY--CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1063 (1458)
Q Consensus 986 ~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~--vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~L 1063 (1458)
.|+..+.++++.+.+++++++|+.++.++++++..+|.||+.++ .+.++. ..|+ .++..++.++|+.
T Consensus 408 ~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~~--------~~~~---~~~~~~l~~~l~~ 476 (536)
T 4dlp_A 408 AILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTD--------PARM---GTVLYVTAEVLRR 476 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC--------HHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCCC--------HHHH---HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999885 343321 1222 3444455555544
Q ss_pred cccccchhhHHhhccCCcchhhhHHHhhhhcCCC
Q psy15414 1064 LNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVP 1097 (1458)
Q Consensus 1064 LGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~ 1097 (1458)
+.+ .|+|++|...+.+.+.||++
T Consensus 477 ~~~-----------lL~P~~P~~aeei~~~L~~~ 499 (536)
T 4dlp_A 477 VGI-----------MVQPFIPQSAEKLLDILAVP 499 (536)
T ss_dssp HHH-----------HHTTTSHHHHHHHHHTTTCC
T ss_pred HHH-----------HhcCcccHHHHHHHHHcCCC
Confidence 444 44555555555555555553
No 10
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=8.1e-37 Score=373.09 Aligned_cols=336 Identities=14% Similarity=0.144 Sum_probs=256.0
Q ss_pred cCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCC
Q psy15414 593 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL 672 (1458)
Q Consensus 593 ~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~ 672 (1458)
.++.|.+. .+++|.+++|||||+|++||||+|++|+||+|+|+|++.||+|.+++|++|+|..|-. ..
T Consensus 11 ~~~~f~p~-~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~---~A-------- 78 (461)
T 1li5_A 11 QKEEFKPI-HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIK---RA-------- 78 (461)
T ss_dssp EEEECCCS-STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHH---HH--------
T ss_pred CccccccC-CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHH---HH--------
Confidence 34455443 5678999999999999999999999999999999999999999999999999954321 11
Q ss_pred CCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEE-ec-cccccc
Q psy15414 673 TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TE-RGESFY 750 (1458)
Q Consensus 673 ~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f-~~-~geS~~ 750 (1458)
. +.|.+ |+.+++.+.+.|.++|++|||.+ +. ..+|.|
T Consensus 79 ----------------~--------------------~~g~~-----~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~ 117 (461)
T 1li5_A 79 ----------------N--------------------ENGES-----FVAMVDRMIAEMHKDFDALNILRPDMEPRATHH 117 (461)
T ss_dssp ----------------H--------------------HTTCC-----HHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGC
T ss_pred ----------------H--------------------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCcccccccch
Confidence 0 12322 77889999999999999999987 32 236789
Q ss_pred chhHHHHHHHHHHcCCeEee-CCcEEEEcCC--------------------------CCC-CCcEEEcC--CCCccCCCc
Q psy15414 751 QKHMEQLVPYLEKKGLLELD-DGRKIMWGED--------------------------RGS-IPMTIVKS--DGGFTYDTS 800 (1458)
Q Consensus 751 ~~~v~~vi~~L~~kG~~ye~-dGa~~~~~d~--------------------------~d~-~~~vL~ks--DGt~tY~tr 800 (1458)
.+.+++++++|.++|++|+. +|++|+.+.. +.. .+++++|+ +|.++|.++
T Consensus 118 ~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~ 197 (461)
T 1li5_A 118 IAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSP 197 (461)
T ss_dssp HHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCC
Confidence 99999999999999999999 9998875321 011 25788886 788888764
Q ss_pred c--------hHHH--HHHhhhcCCCeEEEEeeCCccccHHHHH-HH--HHH-cCCCCCCcceEEEEEeEEEecCCCcccc
Q psy15414 801 D--------LAAI--RQRIEEEKADWIVYVTDLGQGVHFRLLE-EC--AKK-AGILNPNKTRMDFVGFGVVLGEDRKKFK 866 (1458)
Q Consensus 801 D--------iA~~--~~k~~~~~~d~iIyVvg~dq~~hf~~l~-~i--l~a-lG~~~~~~~~~~H~~fg~V~~~~G~KMS 866 (1458)
+ +++. ..++ ++ ..++|++.+.+..|+++. .+ +.+ +|+ |++..|+|++|..+ +|+|||
T Consensus 198 WG~g~PgWhiecsam~~~~--lg--~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~--~~~~~~~h~g~v~~---~G~KMS 268 (461)
T 1li5_A 198 WGAGRPGWHIECSAMNCKQ--LG--NHFDIHGGGSDLMFPHHENEIAQSTCAHDG--QYVNYWMHSGMVMV---DREKMS 268 (461)
T ss_dssp TCSEEECSSHHHHHHHHHH--HC--SSEEEEECBGGGTTTHHHHHHHHHHHHSSS--CCEEEECCBCCEEE---TTBCCC
T ss_pred CCCcCCCccchhHHHHHHH--hC--CCceEEeccCccCchHHHHHHHHHHHhcCC--CCCcEEEEeeEEEE---CCeEcc
Confidence 2 1211 1222 23 356677777776676664 33 333 476 56678999988443 789999
Q ss_pred cccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHH
Q psy15414 867 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 946 (1458)
Q Consensus 867 KR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~y 946 (1458)
||+||+|++.|++++++ .+++||++|+.++++|++||++.+.+.
T Consensus 269 KS~GN~v~~~dll~~~g-----------------------------~dalR~~ll~~~~~~~~~fs~~~l~~~------- 312 (461)
T 1li5_A 269 KSLGNFFTVRDVLKYYD-----------------------------AETVRYFLMSGHYRSQLNYSEENLKQA------- 312 (461)
T ss_dssp GGGTCCCBHHHHHTTSC-----------------------------HHHHHHHHHSSCTTSCEEECHHHHHHH-------
T ss_pred ccCCCccChhHHhhhCC-----------------------------HHHHHHHHHcCCcCCCCCCCHHHHHHH-------
Confidence 99999999999998653 246999999998999999999998865
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhhh
Q psy15414 947 LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT-RDLCLHHLCEYLYDISTAFSEFY 1025 (1458)
Q Consensus 947 lqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~-~~~~p~~l~~yL~~LA~~fN~fy 1025 (1458)
++++.|+.+++++.... + . + + .+..+++.+.+++ ++++++.++.+|+++++.+|+|+
T Consensus 313 -~~~l~rl~n~~~~~~~~---~-----------~-~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~ 370 (461)
T 1li5_A 313 -RAALERLYTALRGTDKT---V-----------A-P-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLK 370 (461)
T ss_dssp -HHHHHHHHHHHTTCCTT---S-----------C-C-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhcC---C-----------C-H-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 56788999999765211 0 0 1 1 2456788889999 78999999999999999999999
Q ss_pred hhccccccccccccccchhHHHHHHHHHHHHHHHHhhhccc
Q psy15414 1026 DNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066 (1458)
Q Consensus 1026 ~~~~vL~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI 1066 (1458)
+. + . .++.++..+|..++.+|||
T Consensus 371 ~~-~---~--------------~~~~~~~~~~~~~~~~lG~ 393 (461)
T 1li5_A 371 AE-D---M--------------AAANAMASHLRKLSAVLGL 393 (461)
T ss_dssp HH-C---H--------------HHHHHHHHHHHHHHTTTTC
T ss_pred hc-c---H--------------HHHHHHHHHHHHHHHHcCC
Confidence 65 2 0 1345667788899999999
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1.6e-36 Score=380.44 Aligned_cols=378 Identities=16% Similarity=0.128 Sum_probs=279.9
Q ss_pred CCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
.++++.|...+|||+||+||||+|++++||+|+|+++..||+|.++++++|+|.+|...+... +
T Consensus 24 ~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~--------g-------- 87 (564)
T 3kfl_A 24 KQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ--------G-------- 87 (564)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT--------T--------
T ss_pred CCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc--------C--------
Confidence 567899999999999999999999999999999999999999999999999999885432110 0
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLV 758 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi 758 (1458)
.+ ++.+++.+.+.|.+++++|||+++. ..+..|.+.+++++
T Consensus 88 ------------------------------~~------p~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~ 131 (564)
T 3kfl_A 88 ------------------------------VS------PMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIW 131 (564)
T ss_dssp ------------------------------CC------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred ------------------------------CC------HHHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHH
Confidence 01 1235777888999999999997753 23346788999999
Q ss_pred HHHHHcCCeEeeCCcEEEEcC------CC------------------CC-------------------------------
Q psy15414 759 PYLEKKGLLELDDGRKIMWGE------DR------------------GS------------------------------- 783 (1458)
Q Consensus 759 ~~L~~kG~~ye~dGa~~~~~d------~~------------------d~------------------------------- 783 (1458)
++|.++|++|+.++..++... +. +|
T Consensus 132 ~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~ 211 (564)
T 3kfl_A 132 KKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPN 211 (564)
T ss_dssp HHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTT
T ss_pred HHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCC
Confidence 999999999987554332110 00 00
Q ss_pred -------------------CCcEEEc---CC-----------CCccCCCcc-----hHHHHH---H---------h--hh
Q psy15414 784 -------------------IPMTIVK---SD-----------GGFTYDTSD-----LAAIRQ---R---------I--EE 811 (1458)
Q Consensus 784 -------------------~~~vL~k---sD-----------Gt~tY~trD-----iA~~~~---k---------~--~~ 811 (1458)
.+..+-| ++ +...|..-| ++...| + + +
T Consensus 212 ~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~- 290 (564)
T 3kfl_A 212 CIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHAL- 290 (564)
T ss_dssp SEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTT-
T ss_pred ccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhh-
Confidence 0112222 11 111222222 222222 0 1 1
Q ss_pred cCCCeEEEEeeCCccccHHHHH--HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLE--ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDK 889 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~--~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~ 889 (1458)
..+..-++|+|.||.. |..++ +++.++|+..| ..+..++| | +.+|+|||||+||+|+|.|++++++
T Consensus 291 ~~wp~dv~~~GkDii~-FH~~~wpa~L~a~g~~~~--~~v~~hg~--v-~~~G~KMSKS~GNvV~p~d~i~~~G------ 358 (564)
T 3kfl_A 291 NRWPADVHVVGKDILK-FHAIYWPAFLMSAELPLP--ERLVSHGW--W-TKDHKKISKSLGNAFDPVEKAKEFG------ 358 (564)
T ss_dssp TCCSCSEEEEEGGGHH-HHHTHHHHHHHHTTCCCC--SCEEEECC--E-EETTEECCTTTTCCCCHHHHHHHHC------
T ss_pred hcCccceEEEeecccc-hHHHHHHHHHHhCCCCCC--cEEEEccc--E-eeCCccccccCCCCCCHHHHHHHcC------
Confidence 1112248999999987 55554 78888997433 35555555 5 4589999999999999999999874
Q ss_pred HhhcCCCCCCChhhhHHHHHhhhhhheeeeeec-CCCCCccccchhhHHh-hhcCcHHHHHHHHHHHHHHHHHhCCCcch
Q psy15414 890 LKDKNRHTELTPTELSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIARTAGINSED 967 (1458)
Q Consensus 890 ~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs-~~~~~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi~SIlrK~~~~~~~ 967 (1458)
.+++||++++ ....+|++||++.+.+ .|++..++++|+++|+++++.+.+..
T Consensus 359 -----------------------~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~--- 412 (564)
T 3kfl_A 359 -----------------------IDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGM--- 412 (564)
T ss_dssp -----------------------HHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSB---
T ss_pred -----------------------cHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---
Confidence 3569999999 6668999999999988 58899999999999999998732211
Q ss_pred hhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc--ccccccccccccchhH
Q psy15414 968 LRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY--CIEKDAEGKIKTVHTG 1045 (1458)
Q Consensus 968 i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~--vL~k~~~~~~~~~~~a 1045 (1458)
+|. ...+ .+.++.|+..+.++++.+.+++++++++.++.++++++..+|.||+.++ .|.++ ...
T Consensus 413 ~p~-----~~~~-~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~kpW~l~~~--------~~~ 478 (564)
T 3kfl_A 413 WPE-----PAEY-SESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKM--------DTA 478 (564)
T ss_dssp CCC-----CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTT--------CHH
T ss_pred CCC-----CCCC-CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCChhhhcC--------CHH
Confidence 221 1122 4678899999999999999999999999999999999999999999885 45442 123
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcCCCc
Q psy15414 1046 RLLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVPV 1098 (1458)
Q Consensus 1046 RL~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~~ 1098 (1458)
|+ .++..++.++|+++++ .|+|++|...+.+...||++.
T Consensus 479 ~~---~~~~~~l~~~l~~l~~-----------lL~P~~P~~ae~i~~~Lg~~~ 517 (564)
T 3kfl_A 479 RL---GTVLYVTMEGLRICTM-----------FLQPVMPQKAKEIMDALGVPE 517 (564)
T ss_dssp HH---HHHHHHHHHHHHHHHH-----------HHTTTSHHHHHHHHHHHTCCG
T ss_pred HH---HHHHHHHHHHHHHHHH-----------HHHhHhhHHHHHHHHHcCCCc
Confidence 33 6778888888888887 788889888888888888754
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=5.3e-34 Score=358.23 Aligned_cols=401 Identities=12% Similarity=0.081 Sum_probs=280.2
Q ss_pred ceEEEEeeCC--ccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 604 LRVLVDFSSP--NIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 604 ~kV~VE~~Sp--Np~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
.++-++.|+| +|+|++||||+|++++||+|+|+++..||+|.++.+++|+|.+|...+...
T Consensus 16 ~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~----------------- 78 (560)
T 3h99_A 16 VAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL----------------- 78 (560)
T ss_dssp -CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-----------------
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh-----------------
Confidence 3445555655 555999999999999999999999999999999999999999886432211
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLV 758 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi 758 (1458)
.-+ ++.+++.+.+.|.+++++|||.++. +.+..|.+.+++++
T Consensus 79 -----------------------------g~~------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~ 123 (560)
T 3h99_A 79 -----------------------------GIT------PEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIY 123 (560)
T ss_dssp -----------------------------TSC------HHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHH
T ss_pred -----------------------------CCC------HHHHHHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHHHH
Confidence 001 2235666788899999999997642 33346778899999
Q ss_pred HHHHHcCCeEeeCCcEEEEcC-------------------------CCC-------------------C-----------
Q psy15414 759 PYLEKKGLLELDDGRKIMWGE-------------------------DRG-------------------S----------- 783 (1458)
Q Consensus 759 ~~L~~kG~~ye~dGa~~~~~d-------------------------~~d-------------------~----------- 783 (1458)
++|.++|++|+.++..++... .++ |
T Consensus 124 ~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~ 203 (560)
T 3h99_A 124 SRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHF 203 (560)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEE
T ss_pred HHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecceE
Confidence 999999999998887664211 010 0
Q ss_pred ------------------------------------CCcEEEcCC---CCc--------cCCCcc--hHHH--H--H---
Q psy15414 784 ------------------------------------IPMTIVKSD---GGF--------TYDTSD--LAAI--R--Q--- 807 (1458)
Q Consensus 784 ------------------------------------~~~vL~ksD---Gt~--------tY~trD--iA~~--~--~--- 807 (1458)
.+..+-|+. |.+ .|..-| ++|. . +
T Consensus 204 f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~ 283 (560)
T 3h99_A 204 FFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDK 283 (560)
T ss_dssp EECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhc
Confidence 011111221 211 111111 2221 0 1
Q ss_pred -----Hhhh-cCCC---eEEEEeeCCccccHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 808 -----RIEE-EKAD---WIVYVTDLGQGVHFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 808 -----k~~~-~~~d---~iIyVvg~dq~~hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
.+.. +..+ ++++|+|.||..++...+ +++.++|+..| ..+..+ |+|+. +|+|||||+||+|+|.|
T Consensus 284 ~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~~p--~~v~~h--g~v~~-~G~KMSKS~GNvv~p~d 358 (560)
T 3h99_A 284 RGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRKP--SNLFVH--GYVTV-NGAKMSKSRGTFIKAST 358 (560)
T ss_dssp HTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCC--SEEEEE--CCEEE-TTEECCTTTTCCCBHHH
T ss_pred cCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCCCC--cEEEEE--eEEEe-CCeeccccCCCcCCHHH
Confidence 0100 2233 679999999886333333 78888998544 344444 55666 88999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-C-CccccchhhHHh-hhcCcHHHHHHHHHHH
Q psy15414 878 LLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-N-LDYVFSFDKMLD-DRGNTAVYLLYAYTRI 954 (1458)
Q Consensus 878 LLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~-~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi 954 (1458)
++++++ .+++||++++..+ . .|++||++.+++ .|.+..+.++|+++|+
T Consensus 359 ~i~~~G-----------------------------aDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~ 409 (560)
T 3h99_A 359 WLNHFD-----------------------------ADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRN 409 (560)
T ss_dssp HHHHSC-----------------------------HHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTT
T ss_pred HHHHcC-----------------------------cHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999764 3579999999766 4 799999999886 4666777778888999
Q ss_pred HHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc--ccc
Q psy15414 955 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY--CIE 1032 (1458)
Q Consensus 955 ~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~--vL~ 1032 (1458)
++++++..... ++ . .+.++.|+..+.++++.+.+++++++|+.++.++++++..+|.||+.++ .+.
T Consensus 410 ~~~~~~~~~~~--~~-------~---~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~ 477 (560)
T 3h99_A 410 AGFINKRFDGV--LA-------S---ELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVA 477 (560)
T ss_dssp HHHHHHHSTTB--CC-------S---SCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHhcCCC--CC-------C---ccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhc
Confidence 99998864221 11 1 1236679999999999999999999999999999999999999999885 244
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhHHh--hccCCcchhhhHHHhhhhcCCCccccccchHHHHH
Q psy15414 1033 KDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTAIAEEEK--KQGISSSISSQTKGAAKKMNVPVRDRMSVRDYLSD 1110 (1458)
Q Consensus 1033 k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~~e~m~~~--~l~l~~~~~~~~~~~l~~~g~~~~~p~~l~~~l~~ 1110 (1458)
++.+ ....+..++.++..+|+.++.||..-+|..+++. +|++. ........ .+.|.++..+.+||++|..
T Consensus 478 k~~~-----~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~-~~w~~~~~--~~~~~~i~~~~~lf~ri~~ 549 (560)
T 3h99_A 478 KQEG-----RDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE-LTWDGIQQ--PLLGHKVNPFKALYNRIDM 549 (560)
T ss_dssp TSTT-----CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC-CCTGGGGS--CCCSCBCCCCSCSCCCCCH
T ss_pred CCcC-----cHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC-CChhhhhc--cCCCCCCCCCCcCCCCCCH
Confidence 4321 1345566677788899999999998888887773 77765 11111111 2357777888888877643
No 13
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=2.5e-33 Score=347.68 Aligned_cols=372 Identities=16% Similarity=0.136 Sum_probs=261.5
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
++++.|...+|||+|++||||+|+++++|+++|+++..||+|.++...+|+|..|..-+.
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~-------------------- 63 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAE-------------------- 63 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHH--------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHH--------------------
Confidence 468999999999999999999999999999999999999999999999999975532110
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVP 759 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~ 759 (1458)
++|.. ++.+++.+.+.|.+.+++|||+++. ..+..|.+.+.++++
T Consensus 64 ---------------------------~~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~ 111 (497)
T 2csx_A 64 ---------------------------ELGIS-----PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFE 111 (497)
T ss_dssp ---------------------------HSSSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred ---------------------------HcCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHHHHH
Confidence 00110 2246777889999999999997653 233448889999999
Q ss_pred HHHHcCCeEee--CCcEEEEcC----C-----------CC----------------------------------------
Q psy15414 760 YLEKKGLLELD--DGRKIMWGE----D-----------RG---------------------------------------- 782 (1458)
Q Consensus 760 ~L~~kG~~ye~--dGa~~~~~d----~-----------~d---------------------------------------- 782 (1458)
+|.++|++|+. .|.+|..+. + ++
T Consensus 112 ~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 191 (497)
T 2csx_A 112 ECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRN 191 (497)
T ss_dssp HHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHH
T ss_pred HHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHH
Confidence 99999999987 565543210 0 00
Q ss_pred --------C-CCcEEEc--CC---CCccCCC-cchH---------HH---HHHh-hhcCCCeEEEEeeCCccccHHHHH-
Q psy15414 783 --------S-IPMTIVK--SD---GGFTYDT-SDLA---------AI---RQRI-EEEKADWIVYVTDLGQGVHFRLLE- 833 (1458)
Q Consensus 783 --------~-~~~vL~k--sD---Gt~tY~t-rDiA---------~~---~~k~-~~~~~d~iIyVvg~dq~~hf~~l~- 833 (1458)
+ .+..+.| ++ |.+.... .++. |. ..+. ..+.+| ||+.|.||.. |.+++
T Consensus 192 ~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~d--i~~~G~D~~~-~H~~~~ 268 (497)
T 2csx_A 192 EIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPAD--LHLVGKDILR-FHTVYW 268 (497)
T ss_dssp HHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCS--CEEEEGGGHH-HHHTHH
T ss_pred HHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhCCce--EEEeecchhH-hHHHHH
Confidence 0 0122222 22 3222210 0110 00 0000 113444 7889999876 33333
Q ss_pred -HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhh
Q psy15414 834 -ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVA 912 (1458)
Q Consensus 834 -~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~ 912 (1458)
+.+.++|+. ...++.|++| |+. +|+|||||+||+|+|.|++++++
T Consensus 269 ~a~l~~~g~~--~~~~~~~~G~--v~~-~G~KMSKS~GN~i~~~dli~~~g----------------------------- 314 (497)
T 2csx_A 269 PAFLMSLGYE--LPKKVFAHGW--WTV-EGKKMSKTLGNVVDPYEVVQEYG----------------------------- 314 (497)
T ss_dssp HHHHHHHTCC--CCSCEEEECC--EES-SSSBCCTTTTCCCCHHHHHHHHC-----------------------------
T ss_pred HHHHHHcCCC--CCcEEEECcE--EEe-CCceeCCcCCCCCCHHHHHHHCC-----------------------------
Confidence 666788973 3457888877 555 88999999999999999999874
Q ss_pred hhheeeeeec-CCCCCccccchhhHHhh-hcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHH
Q psy15414 913 YGCIKYADLS-HNRNLDYVFSFDKMLDD-RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKT 990 (1458)
Q Consensus 913 ~~alRy~lLs-~~~~~d~~Fd~d~~l~~-n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~ 990 (1458)
.+++||++++ .++.+|++||++.+.+. +.+..++++|+++|++++++++.... ++ .+.++.|+..
T Consensus 315 ~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~--~~-----------~~~d~~l~~~ 381 (497)
T 2csx_A 315 LDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGE--VS-----------GARDEEYAKI 381 (497)
T ss_dssp HHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTC--BC-----------CCCCTTHHHH
T ss_pred cHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC-----------chhHHHHHHH
Confidence 2569999998 67799999999999885 55678899999999999998864211 11 1234568888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc-c-cccccccccccchhHHHHHHHHHHHHHHHHhhhccccc
Q psy15414 991 LLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY-C-IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1068 (1458)
Q Consensus 991 l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~-v-L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~~ 1068 (1458)
+..+++.+.+++++++++.++.+|++++..+|.|++.++ + +.++. ...++ .++..++.++|+.+.+
T Consensus 382 l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~~~-------~~~~~---~~~~~~~~~~l~~~~~-- 449 (497)
T 2csx_A 382 AQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNKER-------KKEEL---QKVLYALVDGLFVLTH-- 449 (497)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTS-------CHHHH---HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcccc-------cHHHH---HHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999885 2 32321 11222 4455666666666555
Q ss_pred chhhHHhhccCCcchhhhHHHhhhhcCCC
Q psy15414 1069 AIAEEEKKQGISSSISSQTKGAAKKMNVP 1097 (1458)
Q Consensus 1069 ~e~m~~~~l~l~~~~~~~~~~~l~~~g~~ 1097 (1458)
.|+|++|...+.+...+|.+
T Consensus 450 ---------ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 450 ---------LLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp ---------HHTTTSHHHHHHHHHHTTCS
T ss_pred ---------HhcCccCHHHHHHHHHcCCC
Confidence 66778887777777777764
No 14
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=6.5e-33 Score=335.08 Aligned_cols=340 Identities=16% Similarity=0.124 Sum_probs=249.1
Q ss_pred CCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCC
Q psy15414 594 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 673 (1458)
Q Consensus 594 g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~ 673 (1458)
++.|.+. .+++|.+++|||||++++||||+|++|++|+|+|+|++.||+|..+.+++|+|..|-.- .
T Consensus 15 ke~f~p~-~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~---A--------- 81 (462)
T 3tqo_A 15 KEIFKPI-ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKR---A--------- 81 (462)
T ss_dssp EEECCCS-STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHH---H---------
T ss_pred eeccccC-CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHH---H---------
Confidence 3445433 56789999999999999999999999999999999999999999999999999654311 1
Q ss_pred CCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--ccccccc
Q psy15414 674 KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQ 751 (1458)
Q Consensus 674 ~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~geS~~~ 751 (1458)
. +.|.+ |+.+++.+.+.|.+++++|||.++. ..+|.|+
T Consensus 82 ---------------~--------------------~~g~~-----~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i 121 (462)
T 3tqo_A 82 ---------------G--------------------ENKES-----PAALAERFIQILHEDEKALRVLSPDQEPRATQYV 121 (462)
T ss_dssp ---------------H--------------------HTTSC-----HHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCH
T ss_pred ---------------H--------------------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCccccChhhHH
Confidence 0 11111 6678888999999999999997632 2478899
Q ss_pred hhHHHHHHHHHHcCCeEee-CCcEEEEcCCC---------------------------CCCCcEEEcC--CCCccCCCcc
Q psy15414 752 KHMEQLVPYLEKKGLLELD-DGRKIMWGEDR---------------------------GSIPMTIVKS--DGGFTYDTSD 801 (1458)
Q Consensus 752 ~~v~~vi~~L~~kG~~ye~-dGa~~~~~d~~---------------------------d~~~~vL~ks--DGt~tY~trD 801 (1458)
+.+.+++++|.++|++|+. +|.+++.+... +..+++|||. +|.|.|.+++
T Consensus 122 ~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spw 201 (462)
T 3tqo_A 122 PEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPW 201 (462)
T ss_dssp HHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTT
T ss_pred HHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCC
Confidence 9999999999999999998 79888754210 0025788874 6788888765
Q ss_pred ----hHHHHHHhh--hcCCCeEEEEeeCCccccHHHHHH-HHH--H-cCCCCCCcceEEEEEeEEEecCCCcccccccCC
Q psy15414 802 ----LAAIRQRIE--EEKADWIVYVTDLGQGVHFRLLEE-CAK--K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD 871 (1458)
Q Consensus 802 ----iA~~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~~-il~--a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gn 871 (1458)
.++|+.-.. ...++..|+|+|+++++.||++.. +++ + .|. |++..|+|.++.. .+|+|||||+||
T Consensus 202 G~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~--p~~~~w~H~g~v~---~~G~KMSKSlGN 276 (462)
T 3tqo_A 202 GEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK--PFVKLWMHAGLLE---INKEKMSKSLGN 276 (462)
T ss_dssp CSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSS--CCEEEEEEECCEE---ETTEECCTTTTC
T ss_pred CCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCC--CcceEEEEccEEe---cCCcCccccCCC
Confidence 456654311 112345799999999999999983 444 2 364 6888999998833 388999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHH
Q psy15414 872 TVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAY 951 (1458)
Q Consensus 872 vI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~ 951 (1458)
+|++.|++++++ .+++||++|+.+++++++||++.+.+.. ..+
T Consensus 277 ~i~~~dll~~~g-----------------------------~dalR~~lls~~yr~~l~fs~~~l~~a~--------~~l 319 (462)
T 3tqo_A 277 IISIREALKESD-----------------------------VEVLRYFLLSGHYRNPLSYSKENLENGR--------LAL 319 (462)
T ss_dssp CCBHHHHHHHSC-----------------------------HHHHHHHHHHSCTTSCEEECHHHHHHHH--------HHH
T ss_pred cccHHHHHhhcC-----------------------------hHHhhhhhccCCCCCCcCcCHHHHHHHH--------HHH
Confidence 999999999763 2469999999999999999999887542 233
Q ss_pred HHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhhhhhccc
Q psy15414 952 TRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFSEFYDNCYC 1030 (1458)
Q Consensus 952 aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN~fy~~~~v 1030 (1458)
.|+.+.++..... .+ + .+..+.+.+.++++ +++...++..|+++++..|++.+...
T Consensus 320 ~rl~~~~~~~~~~----------------~~-~-----~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~- 376 (462)
T 3tqo_A 320 ERFYLALRGLPVV----------------NH-E-----KTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQ- 376 (462)
T ss_dssp HHHHHHHTTCCC----------------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhhhc----------------cc-h-----hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcccc-
Confidence 5666555432110 00 0 12335556667776 68999999999999999998754321
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHhhhcccc
Q psy15414 1031 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1067 (1458)
Q Consensus 1031 L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI~ 1067 (1458)
. . ....+...|.....+|||.
T Consensus 377 ----~-------~-----~~~~~~~~~~~~~~vlg~~ 397 (462)
T 3tqo_A 377 ----I-------E-----KAAVLAAELKCLGNIFGLL 397 (462)
T ss_dssp ----H-------H-----HHHHHHHHHHHHHGGGTCS
T ss_pred ----H-------H-----HHHHHHHHHHHHHHhcCCC
Confidence 0 0 0123345566677888883
No 15
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.5e-32 Score=342.75 Aligned_cols=382 Identities=15% Similarity=0.107 Sum_probs=268.6
Q ss_pred CCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
..+++.|--.-|||+|++||||+|+++++|+|+|+++..||+|.++...+|+|..|...+..
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~------------------ 71 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK------------------ 71 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH------------------
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH------------------
Confidence 45678899999999999999999999999999999999999999999999999755321110
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-ccccc--cchhHHHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESF--YQKHMEQLV 758 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS~--~~~~v~~vi 758 (1458)
.|.. |+.+++.+.+.|.+++++|||+++. ..++. |.+.+.+++
T Consensus 72 -----------------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~ 117 (524)
T 2x1l_A 72 -----------------------------EGIP-----AAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIW 117 (524)
T ss_dssp -----------------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred -----------------------------cCCC-----HHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHHHH
Confidence 1111 3346778889999999999997652 22344 888999999
Q ss_pred HHHHHcCCeEeeCCcEEEEcC------C--------------CCCCCcEEE-----------------------------
Q psy15414 759 PYLEKKGLLELDDGRKIMWGE------D--------------RGSIPMTIV----------------------------- 789 (1458)
Q Consensus 759 ~~L~~kG~~ye~dGa~~~~~d------~--------------~d~~~~vL~----------------------------- 789 (1458)
++|.++|++|+.+|.+++... + ..+.+...+
T Consensus 118 ~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p 197 (524)
T 2x1l_A 118 KRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGP 197 (524)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEES
T ss_pred HHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCC
Confidence 999999999999888664321 1 111111110
Q ss_pred ---------------------cC---CCCc--------cCC--CcchHHHH---H------Hhh-hcCCCeEEEEeeCCc
Q psy15414 790 ---------------------KS---DGGF--------TYD--TSDLAAIR---Q------RIE-EEKADWIVYVTDLGQ 825 (1458)
Q Consensus 790 ---------------------ks---DGt~--------tY~--trDiA~~~---~------k~~-~~~~d~iIyVvg~dq 825 (1458)
|+ =|.+ .|. .+.++|.. + .+. .+++| ||+.|.||
T Consensus 198 ~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~d--i~~~G~D~ 275 (524)
T 2x1l_A 198 DARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPAD--LHMIGKDI 275 (524)
T ss_dssp HHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCS--EEEEEGGG
T ss_pred HHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCe--EEEEeech
Confidence 10 0110 010 00011100 0 000 12333 78888888
Q ss_pred cccHHHHH--HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhh
Q psy15414 826 GVHFRLLE--ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE 903 (1458)
Q Consensus 826 ~~hf~~l~--~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee 903 (1458)
. .|.+++ +++.++|+. +.. ++.+++| |+. +|+|||||+||+|+|.|++++++
T Consensus 276 ~-~fh~~~~~a~l~~~g~~-~~~-~v~~hG~--v~~-~G~KMSKS~GN~v~p~d~i~~~g-------------------- 329 (524)
T 2x1l_A 276 I-RFHTVYWPAFLMSAGLP-LPK-RIFAHGW--LLN-RGEKMSKSIGNVVDPVNLVDTFG-------------------- 329 (524)
T ss_dssp H-HHHHTHHHHHHHHHTCC-CCS-CEEEECC--EEE-CSCSEETTTEESSCHHHHHHHHC--------------------
T ss_pred h-HhHHHHHHHHHHHCCCC-CCc-EEEECcE--EEe-CCcccCCcCCCCCCHHHHHHHcC--------------------
Confidence 7 455544 566678973 333 3444455 555 78999999999999999999874
Q ss_pred hHHHHHhhhhhheeeeeec-CCCCCccccchhhHHhh-hcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCC
Q psy15414 904 LSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDD-RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEH 981 (1458)
Q Consensus 904 ~~~~ad~v~~~alRy~lLs-~~~~~d~~Fd~d~~l~~-n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~ 981 (1458)
.+++||++++ .++.+|++||++.+.+. +.+..+.+++++.|+.++++++.... ++. ... ..
T Consensus 330 ---------~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~--~~~-----~~~-~~ 392 (524)
T 2x1l_A 330 ---------LDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAA--VPD-----PGE-FT 392 (524)
T ss_dssp ---------HHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTB--CCC-----CCC-CC
T ss_pred ---------hHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCC-----ccc-cc
Confidence 3569999999 77799999999999874 45666778888899999988753211 110 112 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhccc--cccccccccccchhHHHHHHHHHHHHHHH
Q psy15414 982 EKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC--IEKDAEGKIKTVHTGRLLLAEATAKVMKK 1059 (1458)
Q Consensus 982 ~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~v--L~k~~~~~~~~~~~aRL~L~~av~~VL~~ 1059 (1458)
+.++.|+..+.++++.+.+++++++++.++.+|++++..+|.|++.++. +.++.. .....+ +.++..++.+
T Consensus 393 ~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~l~~~~~----~~~~~~---~~~~l~~l~~ 465 (524)
T 2x1l_A 393 DEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDA----AEDQQR---FRTVLYTTLE 465 (524)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTCCS----HHHHHH---HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCcc----ccCHHH---HHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999998852 433210 001122 2556667777
Q ss_pred HhhhcccccchhhHHhhccCCcchhhhHHHhhhhcCCCc
Q psy15414 1060 CFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVPV 1098 (1458)
Q Consensus 1060 gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~~ 1098 (1458)
+|+.+.+ .|+|++|...+.+...+|.+.
T Consensus 466 ~l~~~~~-----------ll~P~~P~~aeei~~~L~~~~ 493 (524)
T 2x1l_A 466 VVRIASL-----------LLQPVMPESTAKLLDLLGQPT 493 (524)
T ss_dssp HHHHHHH-----------HTTTTCHHHHHHHHHHTTCCT
T ss_pred HHHHHHH-----------HHhhhhhHHHHHHHHHcCCCc
Confidence 7777766 788899988888888888754
No 16
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=6.9e-33 Score=344.16 Aligned_cols=372 Identities=15% Similarity=0.098 Sum_probs=265.6
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
+++.|...+|||+|++||||+|+++++|+++|+++..||+|.++...+|+|..+...+..
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-------------------- 62 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA-------------------- 62 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHH--------------------
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHH--------------------
Confidence 578999999999999999999999999999999999999999999999998655321100
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHHH
Q psy15414 684 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPY 760 (1458)
Q Consensus 684 iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~~ 760 (1458)
.|.. ++.+++.+.+.|.+++++|||+++. ..+..|.+.+++++++
T Consensus 63 ---------------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~ 110 (500)
T 2d5b_A 63 ---------------------------AGED-----PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKK 110 (500)
T ss_dssp ---------------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHH
T ss_pred ---------------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 0110 2346778889999999999997653 2233488899999999
Q ss_pred HHHcCCeEee--CCcEEEE----cCCCC---------CC-----------------------------------------
Q psy15414 761 LEKKGLLELD--DGRKIMW----GEDRG---------SI----------------------------------------- 784 (1458)
Q Consensus 761 L~~kG~~ye~--dGa~~~~----~d~~d---------~~----------------------------------------- 784 (1458)
|.++|++|+. .|.+|.. ..+.+ +.
T Consensus 111 L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~ 190 (500)
T 2d5b_A 111 VYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV 190 (500)
T ss_dssp HHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHH
T ss_pred HHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHH
Confidence 9999999987 3444421 11100 11
Q ss_pred ---------CcEEEc--CC---CCcc----------CCCc------chHHHHHH-hh-hcCCCeEEEEeeCCccccHHHH
Q psy15414 785 ---------PMTIVK--SD---GGFT----------YDTS------DLAAIRQR-IE-EEKADWIVYVTDLGQGVHFRLL 832 (1458)
Q Consensus 785 ---------~~vL~k--sD---Gt~t----------Y~tr------DiA~~~~k-~~-~~~~d~iIyVvg~dq~~hf~~l 832 (1458)
+..+.| ++ |.+. |+.. .++|+... +. .++. -||+.|.||.. |.++
T Consensus 191 ~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~--di~~~G~D~~~-fh~~ 267 (500)
T 2d5b_A 191 LAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPH--AWHLIGKDILK-PHAV 267 (500)
T ss_dssp HHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGG--EEEEEEGGGHH-HHHT
T ss_pred HHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCC--eEEEEeechhh-hHHH
Confidence 112222 22 3211 0000 01222110 11 1233 49999999987 6555
Q ss_pred H--HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHh
Q psy15414 833 E--ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 910 (1458)
Q Consensus 833 ~--~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~ 910 (1458)
+ +.+.++|+. ...++.|++| |+..+|+|||||+||+|+|.|++++++
T Consensus 268 ~~~a~~~~~g~~--~~~~v~~~G~--v~~~~G~KMSKS~GN~i~p~d~i~~~g--------------------------- 316 (500)
T 2d5b_A 268 FWPTMLKAAGIP--MYRHLNVGGF--LLGPDGRKMSKTLGNVVDPFALLEKYG--------------------------- 316 (500)
T ss_dssp HHHHHHHHHTCC--CCSEEEEECC--EECTTSSCCCTTTTCCCCHHHHHHHHC---------------------------
T ss_pred HHHHHHHHcCCC--CCcEEEECce--EEeCCCCcccccCCCCCCHHHHHHhcC---------------------------
Confidence 5 667788973 3457888866 676789999999999999999999874
Q ss_pred hhhhheeeeeec-CCCCCccccchhhHHhh-hcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHH
Q psy15414 911 VAYGCIKYADLS-HNRNLDYVFSFDKMLDD-RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALA 988 (1458)
Q Consensus 911 v~~~alRy~lLs-~~~~~d~~Fd~d~~l~~-n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll 988 (1458)
.+++||++++ .++.+|++||++.+.+. +....+.++++++|+.+++++..... ++. +.++.++
T Consensus 317 --~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~--~~~-----------~~~~~l~ 381 (500)
T 2d5b_A 317 --RDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGR--IPE-----------PVAGEEL 381 (500)
T ss_dssp --HHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB--CCC-----------CCCCGGG
T ss_pred --cHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCc-----------hhHHHHH
Confidence 2469999998 67899999999998874 33445556777889999888763211 110 0124566
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc-c-cccccccccccchhHHHHHHHHHHHHHHHHhhhccc
Q psy15414 989 KTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY-C-IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066 (1458)
Q Consensus 989 ~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~-v-L~k~~~~~~~~~~~aRL~L~~av~~VL~~gL~LLGI 1066 (1458)
..+.++++.+.+++++++++.++.+|++++..+|.|++.++ + +.++. ..| +.++..++.++|+.+.+
T Consensus 382 ~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~~~~~--------~~~---~~~~~~~l~~~l~~~~~ 450 (500)
T 2d5b_A 382 AEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKE--------PEE---ARAVLYRVVEGLRIASI 450 (500)
T ss_dssp GGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC--------HHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhccCc--------HHH---HHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999875 2 32211 133 25567777777777776
Q ss_pred ccchhhHHhhccCCcchhhhHHHhhhhcCCCc
Q psy15414 1067 RTAIAEEEKKQGISSSISSQTKGAAKKMNVPV 1098 (1458)
Q Consensus 1067 ~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~~ 1098 (1458)
.|+|++|...+.+...+|.+.
T Consensus 451 -----------ll~P~~P~~aeei~~~l~~~~ 471 (500)
T 2d5b_A 451 -----------LLTPAMPDKMAELRRALGLKE 471 (500)
T ss_dssp -----------HHTTTSHHHHHHHHHHTTCCS
T ss_pred -----------HhhCcccHHHHHHHHHcCCCc
Confidence 778999999999998888753
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.97 E-value=4.3e-30 Score=311.58 Aligned_cols=329 Identities=16% Similarity=0.072 Sum_probs=214.8
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
+|-++.|+||||+++||||+|++|++|+|+|+++..||+|.++.+|+|+|+|.|. .++. +.+ +
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~---------~Deh--ddK------I 104 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGD---------LDDG--EDK------V 104 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCC---------CCCC--CcH------H
Confidence 8999999999999999999999999999999999999999999999999998873 0110 111 2
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--ccccccchhHHHHHHHHH
Q psy15414 685 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLE 762 (1458)
Q Consensus 685 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~geS~~~~~v~~vi~~L~ 762 (1458)
..+ |. ++|-+ |+.+++.+.+.|.+.+++|||.++. ..++.|++.+++++++|.
T Consensus 105 ~~~--------------A~------~~g~~-----~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~ 159 (501)
T 3sp1_A 105 AKT--------------AR------EKGLT-----VYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILE 159 (501)
T ss_dssp ----------------------------CC-----HHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHH
T ss_pred HHH--------------HH------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHH
Confidence 111 11 11211 5678899999999999999996432 236789999999999999
Q ss_pred HcCCeEeeCCcEEEEcCC---------------------------CCC-CCcEEEcC-----CCCccCCCcc----hHHH
Q psy15414 763 KKGLLELDDGRKIMWGED---------------------------RGS-IPMTIVKS-----DGGFTYDTSD----LAAI 805 (1458)
Q Consensus 763 ~kG~~ye~dGa~~~~~d~---------------------------~d~-~~~vL~ks-----DGt~tY~trD----iA~~ 805 (1458)
++|++|+.+|.+|+.+.. |.+ .+++|||. .|.+.|.++. .++|
T Consensus 160 ~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWh 239 (501)
T 3sp1_A 160 EKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWH 239 (501)
T ss_dssp HTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHH
T ss_pred HCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCch
Confidence 999999999988864311 011 25788876 4667777664 3455
Q ss_pred HHHhh--hcCCCeEEEEeeCCccccHHHHH-H--HHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHH
Q psy15414 806 RQRIE--EEKADWIVYVTDLGQGVHFRLLE-E--CAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLD 880 (1458)
Q Consensus 806 ~~k~~--~~~~d~iIyVvg~dq~~hf~~l~-~--il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLd 880 (1458)
+.-.. ...+...++|++++.++.||++. . .++++.- .|++..|+|++|.. .+|+|||||+||+|++.|+++
T Consensus 240 iEcsam~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g-~~~~~~w~H~g~v~---~~G~KMSKSlGN~it~~dll~ 315 (501)
T 3sp1_A 240 LECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDVFVHGEFLI---MDYNKMSKSRGNFITVKDLED 315 (501)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHT-SCCCSEEEEECCEE---CC----------CCCHHHHHH
T ss_pred HHHHHHHHHHcCCCceEEeeccccccchHHHHHHHHHHccC-CCCCeEEEEeeeEe---eCCeEccccCCCcCCHHHHHh
Confidence 43110 01123457888899899999987 2 3334422 36788999999933 388999999999999999998
Q ss_pred H-HHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHH
Q psy15414 881 E-GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 959 (1458)
Q Consensus 881 e-~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlr 959 (1458)
+ ++ -+++||++|+.+++++++||++.+.+.. ..+-+.+.|+...++
T Consensus 316 ~gyg-----------------------------~d~lR~~lls~~yr~~l~fs~~~l~~a~----~~~~~ll~rl~~~~~ 362 (501)
T 3sp1_A 316 QNFS-----------------------------PLDFRYLCLTSHYRNQLKFSLDNLQASK----IARENLINKLSYFYE 362 (501)
T ss_dssp TTCC-----------------------------HHHHHHHHHTSCTTSCEECCHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred cCCC-----------------------------HHHHHHHHHhccCCCCCccCHHHHHHHH----HhhHHHHHHHHHHHH
Confidence 7 53 2469999999999999999999887642 121222466666665
Q ss_pred HhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH
Q psy15414 960 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFS 1022 (1458)
Q Consensus 960 K~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p~~l~~yL~~LA~~fN 1022 (1458)
+.... ............ . . ..+..+.+.+.+|++ +++...++..|+++++..|
T Consensus 363 ~~~~~---~~~~~~~~~~~~-~--~----~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 363 SLDPV---DLNTLNKDLKNF-G--F----SVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN 416 (501)
T ss_dssp TCCHH---HHHHHHSCTTSC-S--S----HHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS
T ss_pred HHHhh---hcccccccccch-h--h----hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 43210 000000000000 0 1 123445666777776 6898999999999998764
No 18
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.96 E-value=5.9e-29 Score=319.21 Aligned_cols=332 Identities=14% Similarity=0.096 Sum_probs=236.1
Q ss_pred ceEEEEeeCCccCCccccchhhH-HHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRS-TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRs-aiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
+++.|....|||+|++||||+|+ ++++|+++|+++..||+|.++...+++|..+..-+...
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~------------------ 63 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE------------------ 63 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH------------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc------------------
Confidence 47899999999999999999999 89999999999999999999999999998765322100
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec---ccccccchhHHHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVP 759 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~---~geS~~~~~v~~vi~ 759 (1458)
.-+ ++.+++.+.+.|.+.|++|||+++. ..+..|...+++++.
T Consensus 64 ----------------------------G~~------p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f~ 109 (722)
T 1rqg_A 64 ----------------------------GRS------PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFL 109 (722)
T ss_dssp ----------------------------TCC------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred ----------------------------CCC------HHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHHH
Confidence 011 2346788889999999999997654 223357788999999
Q ss_pred HHHHcCCeEeeCCcEEEEcCC-----------------------------------------------------------
Q psy15414 760 YLEKKGLLELDDGRKIMWGED----------------------------------------------------------- 780 (1458)
Q Consensus 760 ~L~~kG~~ye~dGa~~~~~d~----------------------------------------------------------- 780 (1458)
+|.++|++|+.....++....
T Consensus 110 ~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF 189 (722)
T 1rqg_A 110 KAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYY 189 (722)
T ss_dssp HHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEE
T ss_pred HHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccEE
Confidence 999999999865433321100
Q ss_pred -------------------------------CCC-CCcEEEc--------------CCCCccCCCcc--hHHHH----HH
Q psy15414 781 -------------------------------RGS-IPMTIVK--------------SDGGFTYDTSD--LAAIR----QR 808 (1458)
Q Consensus 781 -------------------------------~d~-~~~vL~k--------------sDGt~tY~trD--iA~~~----~k 808 (1458)
+++ .+..+-| .+|...|..-| +.|.. |.
T Consensus 190 ~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~ 269 (722)
T 1rqg_A 190 IKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHF 269 (722)
T ss_dssp ECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHH
T ss_pred EEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHHHHH
Confidence 000 0011111 12223333333 43321 10
Q ss_pred --------hhh-cCC-C---eEEEEeeCCccccHHHHH-HHHHHcC----------CCCCCcceEEEEEeEEEecCCCcc
Q psy15414 809 --------IEE-EKA-D---WIVYVTDLGQGVHFRLLE-ECAKKAG----------ILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 809 --------~~~-~~~-d---~iIyVvg~dq~~hf~~l~-~il~alG----------~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
+.. +.. + ..+++.|.|+..++...+ +++.++| +..| .++.|++| |+. +|+|
T Consensus 270 ~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~P--k~v~~hG~--v~~-~G~K 344 (722)
T 1rqg_A 270 KRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLP--YDIPANEY--LTL-EGKK 344 (722)
T ss_dssp HHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCC--SBCCEECC--EEE-TTEE
T ss_pred hhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCCCCC--CEEEEeee--EEe-CCee
Confidence 111 221 2 458889998764333223 5666665 5333 57888887 444 8899
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecC-CCCCccccchhhHHh-hhcC
Q psy15414 865 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLDYVFSFDKMLD-DRGN 942 (1458)
Q Consensus 865 MSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~-~~~~d~~Fd~d~~l~-~n~n 942 (1458)
||||+||+|++.|++++++ .+++||++++. ...+|++|||+.+.+ .|++
T Consensus 345 MSKS~GNvV~p~d~i~~yg-----------------------------aDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~ 395 (722)
T 1rqg_A 345 FSTSRNWAIWVHEFLDVFP-----------------------------ADYLRYYLTTIMPETRDSDFSFSDFKVRINEE 395 (722)
T ss_dssp CBTTTTBSCBHHHHTTTSC-----------------------------HHHHHHHHHHTCCSSSCEEECHHHHHHHHHHT
T ss_pred eeeeCCCcCCHHHHHHhcC-----------------------------chHHHHHHHhcCCCCCCCccCHHHHHHHHHHH
Confidence 9999999999999999764 35699999997 668999999999887 3555
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy15414 943 TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFS 1022 (1458)
Q Consensus 943 ~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN 1022 (1458)
..+-+.+..+|+.+++.++.... +|. ...+ .+.++.|+..+..+.+.+.+++++++++.++.++++++..+|
T Consensus 396 l~~~l~N~~~R~~~~~~k~~~~~--~~~-----~~~~-~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n 467 (722)
T 1rqg_A 396 LVNNLGNFVHRALTFVNRYFDGV--VPE-----RGEL-DELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGN 467 (722)
T ss_dssp TTTTHHHHHHHHHHHHHHHSTTB--CCC-----CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC--CCC-----cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 44444555589999998863221 221 1122 466888999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy15414 1023 EFYDNCY 1029 (1458)
Q Consensus 1023 ~fy~~~~ 1029 (1458)
.|++.++
T Consensus 468 ~Yi~~~k 474 (722)
T 1rqg_A 468 RYFDHKQ 474 (722)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 9999874
No 19
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.96 E-value=2.2e-28 Score=295.72 Aligned_cols=303 Identities=14% Similarity=0.072 Sum_probs=202.6
Q ss_pred CceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15414 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 682 (1458)
Q Consensus 603 ~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~ 682 (1458)
+++|.+++|||||+|++||||+|++|+||+|+|+|+..||+|.++++++|+|..|...+.
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~-------------------- 96 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAE-------------------- 96 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHH--------------------
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHH--------------------
Confidence 568999999999999999999999999999999999999999999999999965432110
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE-Eec-ccccccchhHHHHHHH
Q psy15414 683 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE-RGESFYQKHMEQLVPY 760 (1458)
Q Consensus 683 ~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~-f~~-~geS~~~~~v~~vi~~ 760 (1458)
+.|. .|+.+++.+.+.|.+++++|||. ++. ..+|.|.+.+++++++
T Consensus 97 ---------------------------~~g~-----~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~ 144 (414)
T 3c8z_A 97 ---------------------------RDGI-----DWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEK 144 (414)
T ss_dssp ---------------------------HHTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHH
T ss_pred ---------------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHH
Confidence 0121 14567888899999999999997 643 2356788899999999
Q ss_pred HHHcCCeEeeC----CcEEEEcCCCCC-------------------------------CCcEEEc--CCCCccCCCcc--
Q psy15414 761 LEKKGLLELDD----GRKIMWGEDRGS-------------------------------IPMTIVK--SDGGFTYDTSD-- 801 (1458)
Q Consensus 761 L~~kG~~ye~d----Ga~~~~~d~~d~-------------------------------~~~vL~k--sDGt~tY~trD-- 801 (1458)
|.++|++|+.+ |++++.+..... .+++++| ..|.+.|.++.
T Consensus 145 L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~ 224 (414)
T 3c8z_A 145 LLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGR 224 (414)
T ss_dssp HHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCS
T ss_pred HHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCC
Confidence 99999999998 999886532110 0123444 24544443321
Q ss_pred --hHHHHHHhh--hcCCCeEEEEeeCCccccHHHHH---HHHHHc-CCCCCCcceEEEEEeEEEecCCCcccccccCCcc
Q psy15414 802 --LAAIRQRIE--EEKADWIVYVTDLGQGVHFRLLE---ECAKKA-GILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTV 873 (1458)
Q Consensus 802 --iA~~~~k~~--~~~~d~iIyVvg~dq~~hf~~l~---~il~al-G~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI 873 (1458)
..+|..... ..-++..++|++.+.+..|+++. +.+.++ |. .|+...|.|.+| |+. +|+|||||+||+|
T Consensus 225 g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~-~~~~~~~~h~g~--v~~-~G~KMSKS~GN~v 300 (414)
T 3c8z_A 225 GRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGE-RRFARHYVHTGM--IGW-DGHKMSKSRGNLV 300 (414)
T ss_dssp EEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCC-SCSEEEEEEECC--BC--------------C
T ss_pred CCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCC-CCcCeEEEEcCE--Eec-CCeEcccccCCcC
Confidence 122221100 00023456667555555555543 455555 75 345567788887 333 7899999999999
Q ss_pred chHHHHHH-HHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHH
Q psy15414 874 KLSELLDE-GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 952 (1458)
Q Consensus 874 ~l~DLLde-~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~a 952 (1458)
++.|++++ ++ .+++||++++.++++|++||++.+.+... .+.
T Consensus 301 ~~~~ll~~g~g-----------------------------~D~lR~~ll~~~~~~d~~fs~~~l~~~~~--------~l~ 343 (414)
T 3c8z_A 301 LVSQLRAQGVD-----------------------------PSAIRLGLFSGHYREDRFWSNEVLDEANA--------RLA 343 (414)
T ss_dssp BHHHHHHTTCC-----------------------------HHHHHHHHHTSCTTSCBCCCHHHHHHHHH--------HHH
T ss_pred CHHHHhhccCC-----------------------------cchheeEEEecCcCCCCCcCHHHHHHHHH--------HHH
Confidence 99999997 53 24699999998889999999999886521 234
Q ss_pred HHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHh
Q psy15414 953 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT-RDLCLHHLCEYLYDISTAFSE 1023 (1458)
Q Consensus 953 Ri~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~-~~~~p~~l~~yL~~LA~~fN~ 1023 (1458)
|+.+.+++... + . +..+.+.+.+++ ++++++.++..|+++++..|+
T Consensus 344 ~l~n~~~~~~~------------~-~------------~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 344 RWRSATALPEA------------P-D------------ATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp HHHHHHTSSCB------------S-C------------CHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc------------h-h------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 55555532210 0 0 123456677787 589999999999999999998
No 20
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.95 E-value=5.5e-27 Score=293.94 Aligned_cols=385 Identities=18% Similarity=0.151 Sum_probs=261.6
Q ss_pred CCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
..|+..|...=|+|+|++||||+|+.++.|+++|+++..||+|..+...+|+|..|..-+..
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k------------------ 68 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ------------------ 68 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH------------------
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH------------------
Confidence 45667788778999999999999999999999999999999999999999999766421110
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc---ccccchhHHHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLV 758 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g---eS~~~~~v~~vi 758 (1458)
+..++ +.+++.+.+.|.+.+++|||++++.. +..|...+++++
T Consensus 69 ----------------------------~g~~~------~e~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f 114 (542)
T 3u1f_A 69 ----------------------------KQVSP------YDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELW 114 (542)
T ss_dssp ----------------------------TTSCH------HHHHHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHHH
T ss_pred ----------------------------cCCCH------HHHHHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHHHHHH
Confidence 01111 23567778889999999999775422 234778899999
Q ss_pred HHHHHcCCeEeeCCcEEEEc---------------CCCC---------CCCcEEEc------------------------
Q psy15414 759 PYLEKKGLLELDDGRKIMWG---------------EDRG---------SIPMTIVK------------------------ 790 (1458)
Q Consensus 759 ~~L~~kG~~ye~dGa~~~~~---------------d~~d---------~~~~vL~k------------------------ 790 (1458)
.+|.++|++|+..+.++... +.+. |.+.....
T Consensus 115 ~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~ 194 (542)
T 3u1f_A 115 TKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPG 194 (542)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTT
T ss_pred HHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhccc
Confidence 99999999998654332111 0000 00000000
Q ss_pred -------------------CC-------------CCcc--------CCCcc--hHHHH---HHhhh--------------
Q psy15414 791 -------------------SD-------------GGFT--------YDTSD--LAAIR---QRIEE-------------- 811 (1458)
Q Consensus 791 -------------------sD-------------Gt~t--------Y~trD--iA~~~---~k~~~-------------- 811 (1458)
.| |.|. |..-| +.|.. +....
T Consensus 195 ~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~ 274 (542)
T 3u1f_A 195 CIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNEL 274 (542)
T ss_dssp SEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGT
T ss_pred ccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhhh
Confidence 00 1110 00001 01110 00000
Q ss_pred cCCCeEEEEeeCCccccHHHHH-HHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLE-ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKL 890 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~-~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~ 890 (1458)
..+...+++.|.|+.-++.-++ +.+.++|+. ....+.|++| +. .+|+|||||+||+|+|.|++++++
T Consensus 275 ~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~--~~~~v~~hg~--l~-~~G~KMSKSlGNvi~p~~~i~~yg------- 342 (542)
T 3u1f_A 275 ERFPADVHVIGKDILKFHAIYWPAFLLSAGLP--LPKKIVAHGW--WT-KDRKKISKSLGNVFDPVEKAEEFG------- 342 (542)
T ss_dssp TCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCC--CCSCEEEECC--CE-ETTBCCBTTTTBCCCHHHHHHHHC-------
T ss_pred cCCcceEEEecccccccccchhHHHHHhhccc--ccceeccccc--ee-cCCceeccccCCCCChhHHHhhcC-------
Confidence 0011247788888743222222 555667873 3457777777 43 379999999999999999999885
Q ss_pred hhcCCCCCCChhhhHHHHHhhhhhheeeeeecC-CCCCccccchhhHHh-hhcCcHHHHHHHHHHHHHHHHHhCCCcchh
Q psy15414 891 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIARTAGINSEDL 968 (1458)
Q Consensus 891 ~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~-~~~~d~~Fd~d~~l~-~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i 968 (1458)
.+++||++++. .+++|++|+++.+.+ .|++..+-+.+...|+.+...+.... +
T Consensus 343 ----------------------aD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~---~ 397 (542)
T 3u1f_A 343 ----------------------YDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGE---W 397 (542)
T ss_dssp ----------------------HHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSB---C
T ss_pred ----------------------chHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCC---C
Confidence 24689999985 458999999999877 35555555666667877654433221 1
Q ss_pred hhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcc--ccccccccccccchhHH
Q psy15414 969 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY--CIEKDAEGKIKTVHTGR 1046 (1458)
Q Consensus 969 ~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~fN~fy~~~~--vL~k~~~~~~~~~~~aR 1046 (1458)
|. ...+ .+.++.++..+..+.+.+.+++++++++.++..|++++...|.|++..+ .+.+++ ..|
T Consensus 398 ~~-----~~~~-~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d--------~~~ 463 (542)
T 3u1f_A 398 PS-----PAAY-TEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTD--------PER 463 (542)
T ss_dssp CC-----CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC--------HHH
T ss_pred Cc-----cchh-hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhcCC--------HHH
Confidence 11 1223 4678889999999999999999999999999999999999999998764 244431 233
Q ss_pred HHHHHHHHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcCCCcccccc
Q psy15414 1047 LLLAEATAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMNVPVRDRMS 1103 (1458)
Q Consensus 1047 L~L~~av~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g~~~~~p~~ 1103 (1458)
+ .++..++.++|+.+.+ .|+|+||...+.+.+.||++......
T Consensus 464 ~---~~~l~~~~~~l~~~~~-----------ll~P~~P~~aeei~~~Lg~~~~~~~~ 506 (542)
T 3u1f_A 464 L---RTVLYITLEGVRVTTL-----------LLSPILPRKSVVIFDMLGVPEVHRKG 506 (542)
T ss_dssp H---HHHHHHHHHHHHHHHH-----------HHTTTSHHHHHHHHHHHTCCGGGGSS
T ss_pred H---HHHHHHHHHHHHHHHH-----------HHHhHhHHHHHHHHHHCCCCCccccc
Confidence 3 5667777777777776 78999999999999999987554433
No 21
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.89 E-value=7e-22 Score=258.17 Aligned_cols=200 Identities=9% Similarity=0.041 Sum_probs=137.8
Q ss_pred EEEeeCCccccHHHHHHHHH--H-cCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcC
Q psy15414 818 VYVTDLGQGVHFRLLEECAK--K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 894 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~--a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~ 894 (1458)
+|+.|.||.... +.+.++. + .|. .++..+|.|++| |+. +|+|||||+||+|+|.|++++++
T Consensus 606 i~~~G~D~~~~H-~~~~~~~~~~~~~~-~~~pk~v~~~G~--v~~-~G~KMSKS~GNvv~p~dli~~yG----------- 669 (810)
T 1wkb_A 606 WRCSGKDLIPNH-LTFFIFNHVAIFRE-EHWPKGIAVNGF--GTL-EGQKMSKSKGNVLNFIDAIEENG----------- 669 (810)
T ss_dssp EEEEEGGGTTTH-HHHHHHHHHHHSCG-GGSCCEEEEECC--EEE-TTBCCCTTTTCCCBHHHHHHHHC-----------
T ss_pred EEeecccccccH-HHHHHHHHHHHcCc-cccccEEEEEeE--EEe-CCeehhhcCCCcCCHHHHHHHcC-----------
Confidence 777777774311 1111221 2 332 123367888888 443 78999999999999999999875
Q ss_pred CCCCCChhhhHHHHHhhhhhheeeeee-cCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhcc
Q psy15414 895 RHTELTPTELSEAQQAVAYGCIKYADL-SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQ 973 (1458)
Q Consensus 895 ~~~~~~~ee~~~~ad~v~~~alRy~lL-s~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~ 973 (1458)
.+++||+++ +.++++|++||++.+... +++ +.|+.+++++..... .+.
T Consensus 670 ------------------aDalR~~ll~~~~~~~d~~fs~~~~~~~----~~~----l~rl~n~~~~~~~~~--~~~--- 718 (810)
T 1wkb_A 670 ------------------ADVVRLYIMSLAEHDSDFDWRRKEVGKL----RKQ----IERFYELISQFAEYE--VKG--- 718 (810)
T ss_dssp ------------------HHHHHHHHHHHCCTTCCEEECHHHHHHH----HHH----HHHHHHHHHHHHTCC--CCS---
T ss_pred ------------------hHHHHHHHHhcCCCCCCcccCHHHHHHH----HHH----HHHHHHHHHHHHhcc--Ccc---
Confidence 246899998 567799999999876543 233 478888888752211 010
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHhhhhhccccccccccccccchhHHHHHHHH
Q psy15414 974 STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL-YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEA 1052 (1458)
Q Consensus 974 ~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL-~~LA~~fN~fy~~~~vL~k~~~~~~~~~~~aRL~L~~a 1052 (1458)
...+ .+.++.|+..+..+.+.+.+++++++++.++..+ +.+++.+|.|++.++ +.+ . .+
T Consensus 719 --~~~~-~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k----~~~------~-------~~ 778 (810)
T 1wkb_A 719 --NVEL-KDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE----GRD------D-------EA 778 (810)
T ss_dssp --CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTT----TCC------C-------HH
T ss_pred --cccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhc----Ccc------h-------hH
Confidence 1112 4668889999999999999999999999999865 699999999988764 111 1 11
Q ss_pred HHHHHHHHhhhcccccchhhHHhhccCCcchhhhHHHhhhhcC
Q psy15414 1053 TAKVMKKCFDILNIRTAIAEEEKKQGISSSISSQTKGAAKKMN 1095 (1458)
Q Consensus 1053 v~~VL~~gL~LLGI~~~e~m~~~~l~l~~~~~~~~~~~l~~~g 1095 (1458)
+..+|.++|+.+.+ .|+|++|...+.+...||
T Consensus 779 ~~~~l~~~l~~l~~-----------lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 779 KRYVLRTLADVWVR-----------LMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHHHHHHHHHHH-----------HHTTTSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH-----------HHhhhhhHHHHHHHHhcC
Confidence 24456666666555 678888888888777664
No 22
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.84 E-value=2e-20 Score=244.22 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=118.5
Q ss_pred EEEEeeCCcc-ccHHHHHHHHHHc-CCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcC
Q psy15414 817 IVYVTDLGQG-VHFRLLEECAKKA-GILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 894 (1458)
Q Consensus 817 iIyVvg~dq~-~hf~~l~~il~al-G~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~ 894 (1458)
-+|+.|.||. .||..+..+..++ |. .|+. + ...+|+|++.+|+|||||+||+|+|.|++++++
T Consensus 546 dl~~~G~D~~r~w~~~~~~~~~~~~~~-~pf~-~--v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yG----------- 610 (821)
T 1ile_A 546 DFIAEGIDQTRGWFNSLHQLGVMLFGS-IAFK-N--VICHGLILDEKGQKMSKSKGNVVDPWDIIRKFG----------- 610 (821)
T ss_dssp SBEEEEGGGGGTHHHHHHHHHHHHHSS-CSBS-E--EEEECCEECTTSSCCCTTTTCCCCHHHHHTTTC-----------
T ss_pred ccccchhhhhccHHHHHHHHHHHhcCC-CCcc-e--EEEEeeEECCCCCCCCccCCCCCCHHHHHHHhC-----------
Confidence 4788898887 4555555544443 53 3443 2 333455777799999999999999999999764
Q ss_pred CCCCCChhhhHHHHHhhhhhheeeeeecCC-CCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhcc
Q psy15414 895 RHTELTPTELSEAQQAVAYGCIKYADLSHN-RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQ 973 (1458)
Q Consensus 895 ~~~~~~~ee~~~~ad~v~~~alRy~lLs~~-~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~ 973 (1458)
.+++||++++.. +++|++||++.+.....+..+-+.+++.|+.......+.... . .
T Consensus 611 ------------------aDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~---~--~ 667 (821)
T 1ile_A 611 ------------------ADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLK---N--P 667 (821)
T ss_dssp ------------------HHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT---S--C
T ss_pred ------------------HHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcc---c--c
Confidence 246999999976 699999999998763233444555555554322111111100 0 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHhhhhhc
Q psy15414 974 STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS--TAFSEFYDNC 1028 (1458)
Q Consensus 974 ~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA--~~fN~fy~~~ 1028 (1458)
.....+ .+.++.++..+..+...+.+++++++++.++.+|++++ ...|.|++.+
T Consensus 668 ~~~~~~-~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~ 723 (821)
T 1ile_A 668 PPPEKR-PEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRN 723 (821)
T ss_dssp CCSTTS-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHH
T ss_pred cccccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001122 46678899999999999999999999999999999999 5566666654
No 23
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.84 E-value=7.7e-21 Score=232.09 Aligned_cols=138 Identities=17% Similarity=0.103 Sum_probs=102.9
Q ss_pred CcEEEcCCCCccC-CCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCc
Q psy15414 785 PMTIVKSDGGFTY-DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 863 (1458)
Q Consensus 785 ~~vL~ksDGt~tY-~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~ 863 (1458)
++||+|+||.||| ++.++..|. .+++++| +|.||..+++++..+++++|+.. +.+.|+++ +++.+|+
T Consensus 194 D~Vl~RsDG~ptY~~a~vvDD~~-----~githvi--rG~D~~~~t~~q~~l~~aLG~~~---p~~~H~pl--il~~~G~ 261 (481)
T 2o5r_A 194 DFVIMRSNGLPTYNFACVVDDML-----MEITHVI--RGDDHLSNTLRQLALYEAFEKAP---PVFAHVST--ILGPDGK 261 (481)
T ss_dssp BEEEECTTSCBCHHHHHHHHHHH-----TTCSEEE--EEGGGHHHHHHHHHHHHHTTCCC---CEEEEECC--EECTTSS
T ss_pred CeEEEccCCCcchhhHHHHHHHh-----CCCCeEE--EChhHHHhHHHHHHHHHHcCCCC---CeEEEEee--EECCCCC
Confidence 5899999999999 455555443 4678885 99999999999999999999843 36899888 6678999
Q ss_pred ccccccCCccchHHHHHHH--HHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhc
Q psy15414 864 KFKTRSGDTVKLSELLDEG--LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 864 KMSKR~GnvI~l~DLLde~--~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~ 941 (1458)
|||||+|++ ++++++++. .+...+.+...|-.+.-+ ++..... +++++|+++..+.++..|||+++..+|+
T Consensus 262 KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~s~~~~-~e~~~~~-----e~i~~f~l~~~~~~~~~fd~~kl~~~n~ 334 (481)
T 2o5r_A 262 KLSKRHGAT-SVEAFRDMGYLPEALVNYLALLGWSHPEG-KELLTLE-----ELISSFSLDRLSPNPAIFDPQKLKWMNG 334 (481)
T ss_dssp BCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSSBCCTTC-CCCCCHH-----HHHHHCCGGGBCSSCEECCHHHHHHHHH
T ss_pred cccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCcc-cccCCHH-----HHHHhCChhhCCccCcccChHHhhhhCH
Confidence 999999998 899999873 223344444433211000 0111111 3589999999999999999999998874
No 24
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.84 E-value=5.3e-20 Score=241.14 Aligned_cols=212 Identities=15% Similarity=0.114 Sum_probs=140.5
Q ss_pred EEEEeeCCcc-ccHHHHHHHHH-HcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcC
Q psy15414 817 IVYVTDLGQG-VHFRLLEECAK-KAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 894 (1458)
Q Consensus 817 iIyVvg~dq~-~hf~~l~~il~-alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~ 894 (1458)
-+|+.|.||. ++|..+..... ..|. .|+..-+.| |+|+..+|+|||||+||+|+|.|++++++
T Consensus 550 Dl~~~G~D~~r~wf~~~l~~s~~~~g~-~Pfk~v~~h---G~V~d~~G~KMSKSlGNvV~P~dvi~~yG----------- 614 (917)
T 1ffy_A 550 DMYLEGSDQYRGWFNSSITTSVATRGV-SPYKFLLSH---GFVMDGEGKKMSKSLGNVIVPDQVVKQKG----------- 614 (917)
T ss_dssp SEEEEEGGGGTTHHHHHHHHHHHHHSS-CSBSEEEEE---CCEECTTSCCCCSSSSCCCCHHHHHHHTC-----------
T ss_pred eEEEEEecccccHHHHHHHHHHHhhCC-CcccceeEe---eeEEcCCCcCcccccCCcCChHHHHHhCC-----------
Confidence 3889999987 57777653333 3464 344333334 56887789999999999999999999875
Q ss_pred CCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchh-hhhcc
Q psy15414 895 RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL-RVAAQ 973 (1458)
Q Consensus 895 ~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i-~~~~~ 973 (1458)
.+++||++++..+.+|++||++.+.... .++.|+.+.+|......... +....
T Consensus 615 ------------------aDalR~~lls~~~~~D~~fs~~~l~~~~--------~~~~kl~n~~r~~l~nl~~~~~~~~~ 668 (917)
T 1ffy_A 615 ------------------ADIARLWVSSTDYLADVRISDEILKQTS--------DDYRKIRNTLRFMLGNINDFNPDTDS 668 (917)
T ss_dssp ------------------HHHHHHHHHTSCTTSCEECCHHHHHHHH--------HHHHHHHHHHHHHHHTSTTCCHHHHC
T ss_pred ------------------HHHHHHHHhccCCCCCcccCHHHHHHHH--------HHHHHHHHHHHHHHhhhhccCccccc
Confidence 2469999999888999999999877531 23456666555431000000 00000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHhhh-hhcc-ccccccccccccchhHHHHHH
Q psy15414 974 STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST-AFSEFY-DNCY-CIEKDAEGKIKTVHTGRLLLA 1050 (1458)
Q Consensus 974 ~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~-~fN~fy-~~~~-vL~k~~~~~~~~~~~aRL~L~ 1050 (1458)
.+...+ .+.++.++..+.++.+.+.+++++++++.++.+|++++. .++.+| +..+ .+-.+... ...|....
T Consensus 669 v~~~~l-~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~-----~~~r~~~~ 742 (917)
T 1ffy_A 669 IPESEL-LEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRD-----SHIRRSMQ 742 (917)
T ss_dssp CCGGGS-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTT-----CHHHHHHH
T ss_pred CCcccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCC-----cHHHHHHH
Confidence 011122 467888999999999999999999999999999999998 566555 4332 22111100 23454455
Q ss_pred HHHHHHHHHHhhhcccccchhhHHh
Q psy15414 1051 EATAKVMKKCFDILNIRTAIAEEEK 1075 (1458)
Q Consensus 1051 ~av~~VL~~gL~LLGI~~~e~m~~~ 1075 (1458)
.+...+|...+.+|..-+|...++.
T Consensus 743 ~~l~~~l~~l~~lLaP~~P~~aEei 767 (917)
T 1ffy_A 743 TVLYQILVDMTKLLAPILVHTAEEV 767 (917)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccHHHHHH
Confidence 5666677777777777677666653
No 25
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.83 E-value=5.3e-21 Score=188.19 Aligned_cols=108 Identities=25% Similarity=0.434 Sum_probs=90.6
Q ss_pred ccccchHHHHHHHHHHHHhhccccCCCCCceeeccCCCCCCCchhhhcHHHHhchhccccCCCCChHHHHHHHHHhhhhc
Q psy15414 1100 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSE 1179 (1458)
Q Consensus 1100 ~p~~l~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~gd~a~n~a~~lak~~~~~~~~~~pr~ia~~~~~~~~~~ 1179 (1458)
++|++.+.|.+.+.+|+.++. ++. ...+.|++ |++..|||||||+||+|||.+ |++||+||+.|+++
T Consensus 2 ~~M~i~~~l~~~i~~al~~~~--~~~-~~~~~ve~-p~~~~~GD~a~n~a~~lak~~-----~~~P~~iA~~i~~~---- 68 (109)
T 3gdz_A 2 NAMNIQALLSEKVSQALIAAG--APA-DCEPQVRQ-SAKVQFGDYQANGVMAVAKKL-----GMAPRQLAEQVLSH---- 68 (109)
T ss_dssp CCCCHHHHHHHHHHHHHHHTT--CCT-TCCCCEEE-CSSGGGCSEEECCHHHHHHHT-----TSCHHHHHHHHHHH----
T ss_pred CccCHHHHHHHHHHHHHHHcC--CCc-cCCceeec-CCCCCcceeecHHHHHHHHHh-----CCCHHHHHHHHHHh----
Confidence 478999999999999998862 331 13457788 889999999999999999999 79999999999998
Q ss_pred cccCCccccCeeEEEEecCCeeEEEeCccchHHHHHHHHHcCCCCC
Q psy15414 1180 LATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP 1225 (1458)
Q Consensus 1180 ~~~~~~~~~~~~~~eiagpGfin~~l~~~~~~~~~~~v~~~~~~~~ 1225 (1458)
|..+ ++|++|||||||||||+|++.|+.++|+.|+.. .++|
T Consensus 69 l~~~----~~i~~vevagpGFINf~l~~~~~~~~l~~il~~-~~lG 109 (109)
T 3gdz_A 69 LDLN----GIANKVEIAGPGFINIFLDPAFLADNVNRALQS-ERLG 109 (109)
T ss_dssp CCCT----TTEEEEEEETTTEEEEEECHHHHHHHHHHHHTT-C---
T ss_pred cCcC----CcEeEEEEeCCCeEEEEECHHHHHHHHHHHHhc-ccCC
Confidence 4433 359999999999999999999999999999864 3444
No 26
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.82 E-value=2.5e-21 Score=240.86 Aligned_cols=274 Identities=16% Similarity=0.134 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCceEEEEee--CCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch--hHH
Q psy15414 582 YAGEQIKDIIVNGVQPPTLNKKLRVLVDFS--SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG--TQF 657 (1458)
Q Consensus 582 ~~~~~l~~i~~~g~~~~~~~~~~kV~VE~~--SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G--~Qi 657 (1458)
|..+.+.++++.+.. ++ .+.| +|||||++||||+|+++++|+++|+|++.||+|..+++|+|+| .++
T Consensus 4 W~~~~a~~~~~~~~~------~~---~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rki 74 (523)
T 1irx_A 4 WADYIADKIIRERGE------KE---KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKV 74 (523)
T ss_dssp HHHHHHHHHHHHSCC------CS---EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCC
T ss_pred hHHHHHHHHHHhcCC------CC---eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhh
Confidence 445556666654322 22 2334 6999999999999999999999999999999999999999998 444
Q ss_pred H-HHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q psy15414 658 G-MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 736 (1458)
Q Consensus 658 ~-~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~ 736 (1458)
. .+..+.. ++.+. +. .+-.||. ..|+.+++.+.+.|.+.++
T Consensus 75 p~~~~~a~~----~~~G~--~~------------------------------~~~p~p~--~~~~~~~~~~~~~~~~~l~ 116 (523)
T 1irx_A 75 PRNVPQEWK----DYLGM--PI------------------------------SEVPDPW--GCHESYAEHFMRKFEEEVE 116 (523)
T ss_dssp CSSSCGGGG----GGTTS--BG------------------------------GGSCCTT--SSSSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHH----HHcCC--Cc------------------------------ccCCcch--hhHHHHHHHHHHHHHHHHH
Confidence 0 0000000 00000 00 0111221 1245577888999999999
Q ss_pred HhCCEEecccccc-cch-hHHHHHHHHHHcC----------------CeEeeCCcEE---EEcCCCCC----------CC
Q psy15414 737 RLNVTLTERGESF-YQK-HMEQLVPYLEKKG----------------LLELDDGRKI---MWGEDRGS----------IP 785 (1458)
Q Consensus 737 ~L~i~f~~~geS~-~~~-~v~~vi~~L~~kG----------------~~ye~dGa~~---~~~d~~d~----------~~ 785 (1458)
.|||.++...+|. |.+ .+.+++++|.++| ++|+.+ +. -+++.++. .+
T Consensus 117 ~Lgi~~D~~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (523)
T 1irx_A 117 KLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPEN--WWPAMVYCPEHRREAEIIEWDGGWK 194 (523)
T ss_dssp TTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTT--CCSEEEECTTTCCEECEEEECSSSC
T ss_pred HcCCCceEEechhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCC--ceeccccchhhCCcccccccCCCCc
Confidence 9999764434676 776 8999999999999 677542 11 12222210 01
Q ss_pred cEEEcCCCCccCCCcc-----hHHHHHH-hhhcCCCeEEEEeeCCcccc---HHHHHHHH-HHcCCCCCCcceEEEEEeE
Q psy15414 786 MTIVKSDGGFTYDTSD-----LAAIRQR-IEEEKADWIVYVTDLGQGVH---FRLLEECA-KKAGILNPNKTRMDFVGFG 855 (1458)
Q Consensus 786 ~vL~ksDGt~tY~trD-----iA~~~~k-~~~~~~d~iIyVvg~dq~~h---f~~l~~il-~alG~~~~~~~~~~H~~fg 855 (1458)
.-..-.+|.+++.... +.++.+. ...+.++..|+++|.||... .++...++ +++|+..| .|.|++|
T Consensus 195 ~~f~~~~g~~~~~d~~~G~g~~~w~~d~~~~~~~l~~~vd~~G~Dh~~~h~s~~~~~~i~~~alG~~~p---~~~h~~~- 270 (523)
T 1irx_A 195 VKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAP---LSLMYEF- 270 (523)
T ss_dssp EEECCSSSCCCEECTTSSCEEECHHHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCC---BCCEECC-
T ss_pred eeeeecCCCccccCCcCCCCCCCCCcchHhhHHHcCCCCcCCCcCccCCCcchhhHHHHHHHHhCCCCC---eEEEEEE-
Confidence 0001123433332111 1122211 00122345677899998871 22233333 68898433 6788887
Q ss_pred EEecC-CCcccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchh
Q psy15414 856 VVLGE-DRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFD 934 (1458)
Q Consensus 856 ~V~~~-~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d 934 (1458)
|++. +|+|||||+||+|++.|+++++. -+++|||+++.++.++.+||++
T Consensus 271 -i~~~g~g~KmSKs~Gn~i~~~~~~~~~~-----------------------------pdalR~~l~~~~~~~~~~fs~~ 320 (523)
T 1irx_A 271 -VGIKGQKGKMSGSKGNVILLSDLYEVLE-----------------------------PGLVRFIYARHRPNKEIKIDLG 320 (523)
T ss_dssp -EEESCC---------CCCCHHHHHTTSC-----------------------------HHHHHHHHHSSCTTSCEEECCS
T ss_pred -EEeCCCCCCCCCcCCCCCCHHHHHHHcC-----------------------------HHHHHHHHHhcCCCCCceeCcc
Confidence 5555 68999999999999999998652 1468999999999999999999
Q ss_pred -hHHh
Q psy15414 935 -KMLD 938 (1458)
Q Consensus 935 -~~l~ 938 (1458)
.+.+
T Consensus 321 ~~l~~ 325 (523)
T 1irx_A 321 LGILN 325 (523)
T ss_dssp TTHHH
T ss_pred hhHHH
Confidence 5554
No 27
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.81 E-value=4e-18 Score=221.63 Aligned_cols=134 Identities=17% Similarity=0.205 Sum_probs=98.0
Q ss_pred CCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHH
Q psy15414 602 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 681 (1458)
Q Consensus 602 ~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l 681 (1458)
.+++..|...-|||+|.+||||+++.++.|+++|+.+..||+|.+....+.+|..+...+.. ..... +.. ..+
T Consensus 32 ~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek---~l~~~-g~~--~~~- 104 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVER---LLLKE-GKT--RHD- 104 (862)
T ss_dssp CSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHT---TTTTT-TSC--CSC-
T ss_pred CCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHH---HHHHc-CCC--hHH-
Confidence 34578899999999999999999999999999999999999999999999999866533211 11110 100 000
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEeccc-----ccccchhHHH
Q psy15414 682 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQ 756 (1458)
Q Consensus 682 ~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~~g-----eS~~~~~v~~ 756 (1458)
+ ..+.|.+.++ .+++.+...+.+.+++||+++++.. +..|...+..
T Consensus 105 ----------~-~~~~f~~~~~------------------~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~ 155 (862)
T 1gax_A 105 ----------L-GREKFLERVW------------------QWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRY 155 (862)
T ss_dssp ----------C-CTTHHHHHHH------------------HHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHH
T ss_pred ----------c-CHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHH
Confidence 0 1123444333 2356677889999999999887632 2346778999
Q ss_pred HHHHHHHcCCeEeeC
Q psy15414 757 LVPYLEKKGLLELDD 771 (1458)
Q Consensus 757 vi~~L~~kG~~ye~d 771 (1458)
++.+|.++|++|+..
T Consensus 156 ~F~~L~~kGliYrg~ 170 (862)
T 1gax_A 156 AFSRYYHEGLAYRAP 170 (862)
T ss_dssp HHHHHHTTSSEEEEC
T ss_pred HHHHHHHCCCEEecc
Confidence 999999999999643
No 28
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.80 E-value=2.8e-18 Score=223.96 Aligned_cols=124 Identities=12% Similarity=0.044 Sum_probs=95.4
Q ss_pred cccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeec-CCCCCccccchhhHHhhhc
Q psy15414 863 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 863 ~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs-~~~~~d~~Fd~d~~l~~n~ 941 (1458)
+|||||+||+|+|.|++++++ .+++||++++ ..+.+|++||++.+...
T Consensus 636 ~KMSKSkGNvVdP~diI~~yG-----------------------------ADalRl~ll~~~~~~~D~~fs~~~v~~~-- 684 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKEQG-----------------------------ADIARITILFAAPPENEMVWTEEGVQGA-- 684 (878)
T ss_dssp EECSGGGTCCCBHHHHHHHSC-----------------------------HHHHHHHHHHHSCTTSCEEECHHHHHHH--
T ss_pred HHhhccCCCcccHHHHHHHcC-----------------------------ccHHHHHHhccCCCCCCceeCHHHHHHH--
Confidence 899999999999999999875 2469999998 67799999999987653
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy15414 942 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAF 1021 (1458)
Q Consensus 942 n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL~~LA~~f 1021 (1458)
...++|+.++++++..... +.........+ .+.++.|+..+.++...+.+++++++++.++.++++++..+
T Consensus 685 ------~~~l~Rl~n~~~~~~~~~~--~~~~~~~~~~l-~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l 755 (878)
T 2v0c_A 685 ------WRFLNRIYRRVAEDREALL--ETSGVFQAEAL-EGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNAL 755 (878)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH--TCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhccc--ccccccCcccC-CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 2355788888776411000 00000001122 46788999999999999999999999999999999999999
Q ss_pred Hhhhh
Q psy15414 1022 SEFYD 1026 (1458)
Q Consensus 1022 N~fy~ 1026 (1458)
|+|.+
T Consensus 756 ~k~~~ 760 (878)
T 2v0c_A 756 YEYRK 760 (878)
T ss_dssp HHHHH
T ss_pred hhhcc
Confidence 99854
No 29
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.80 E-value=2.1e-17 Score=214.15 Aligned_cols=166 Identities=10% Similarity=0.175 Sum_probs=115.2
Q ss_pred EEEEeeCCc-ccc--HHHHH-HHHHHcCCCCCCcceEEEEEeEEEe-------cCCCc----------------------
Q psy15414 817 IVYVTDLGQ-GVH--FRLLE-ECAKKAGILNPNKTRMDFVGFGVVL-------GEDRK---------------------- 863 (1458)
Q Consensus 817 iIyVvg~dq-~~h--f~~l~-~il~alG~~~~~~~~~~H~~fg~V~-------~~~G~---------------------- 863 (1458)
=+||.|.+| .+| +.+++ .+|..+|+.....+.-..+..|||+ ..+|+
T Consensus 545 D~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~ 624 (880)
T 4arc_A 545 DIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKA 624 (880)
T ss_dssp EEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEE
T ss_pred eEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccc
Confidence 478888888 344 46655 5677777622111222233335564 55666
Q ss_pred --------------ccccccCCccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecC-CCCCc
Q psy15414 864 --------------KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLD 928 (1458)
Q Consensus 864 --------------KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~-~~~~d 928 (1458)
|||||+||+|+|.|++++++. +++|||+|+. .+++|
T Consensus 625 ~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGA-----------------------------DalRl~ll~~~~~~~d 675 (880)
T 4arc_A 625 KDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGA-----------------------------DTVRLFMMFASPADMT 675 (880)
T ss_dssp ECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCH-----------------------------HHHHHHHHHSSCTTSC
T ss_pred cccCCccccccccccccCcCCCCCCHHHHHHHcCc-----------------------------hHHHHHHHhcCCCCCC
Confidence 999999999999999999852 4689999998 67999
Q ss_pred cccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhH
Q psy15414 929 YVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR-DLCL 1007 (1458)
Q Consensus 929 ~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~-~~~p 1007 (1458)
++||.+.+.... .++ .|+.++++.+..... .+. .....+ .+.++.|+..+.++...+.++++ ++++
T Consensus 676 l~~s~~~ie~a~----rfl----~rlwn~~~~~~~~~~-~~~---~~~~~l-~~~D~~ll~~l~~~i~~V~~a~ed~~~f 742 (880)
T 4arc_A 676 LEWQESGVEGAN----RFL----KRVWKLVYEHTAKGD-VAA---LNVDAL-TENQKALRRDVHKTIAKVTDDIGRRQTF 742 (880)
T ss_dssp EECCHHHHHHHH----HHH----HHHHHHHHHHHHTCC-CCC---CCSTTC-CHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred cccCHHHHHHHH----HHH----HHHHHHHHHHHhccc-ccc---cccccC-CHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 999999876431 233 566666554310000 000 011123 46788899999999999999999 7999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy15414 1008 HHLCEYLYDISTAFSEF 1024 (1458)
Q Consensus 1008 ~~l~~yL~~LA~~fN~f 1024 (1458)
+.++..+++++..+|+|
T Consensus 743 ntAi~~l~efvn~l~k~ 759 (880)
T 4arc_A 743 NTAIAAIMELMNKLAKA 759 (880)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 99999999999999885
No 30
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.78 E-value=9.2e-19 Score=217.97 Aligned_cols=267 Identities=16% Similarity=0.117 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHH
Q psy15414 580 RVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 659 (1458)
Q Consensus 580 ~~~~~~~l~~i~~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~ 659 (1458)
+.++...+..+++.|..|+.. ..++|.+.|+ |||||+|||||+|++++++.++|- +-| ..+--|.|.-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G---~~ilRieDtD----- 172 (592)
T 3al0_C 105 SMFITGAFFDILEVGPKKIRR-CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGG---KFILRIEDTD----- 172 (592)
T ss_dssp ---------------CCCCCC-CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTC---EEEECBCCCC-----
T ss_pred hHHHHHHHHHHHHcChhhccc-CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCC---cEEEEecCcC-----
Confidence 456778888888888887653 3467999999 999999999999999999999984 223 2333444421
Q ss_pred HHHHHHhhcCCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15414 660 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 739 (1458)
Q Consensus 660 l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~ 739 (1458)
+.. . . .-+.+.+.+.+..||
T Consensus 173 ---------~~r----------------------~------------------~-----------~~~~~~I~~dL~wlG 192 (592)
T 3al0_C 173 ---------TER----------------------S------------------S-----------REYEQQILESLRWCG 192 (592)
T ss_dssp ---------SSS----------------------C------------------C-----------HHHHHHHHHHHHHTT
T ss_pred ---------hhh----------------------c------------------c-----------HHHHHHHHHHHHHcC
Confidence 000 0 0 112345677788899
Q ss_pred CEEec----------ccccccchhHHHHHHHHHHcCCeEe-----------------------eCCc---EEEEcCC---
Q psy15414 740 VTLTE----------RGESFYQKHMEQLVPYLEKKGLLEL-----------------------DDGR---KIMWGED--- 780 (1458)
Q Consensus 740 i~f~~----------~geS~~~~~v~~vi~~L~~kG~~ye-----------------------~dGa---~~~~~d~--- 780 (1458)
+.++. ...|.+.+...+++++|.++|++|. .+|. +++..++
T Consensus 193 l~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~ 272 (592)
T 3al0_C 193 LDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKT 272 (592)
T ss_dssp CCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCC
T ss_pred CCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCc
Confidence 97754 1245666778899999999999997 3462 3332321
Q ss_pred --------------CCCCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCc
Q psy15414 781 --------------RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNK 846 (1458)
Q Consensus 781 --------------~d~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~ 846 (1458)
.+..++||+|+||.|||.. |...+.. ..+++++| +|.||..+.+++..+++++|+..
T Consensus 273 ~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~---a~vvDD~-~~githvi--rG~D~~~~t~~q~~l~~alg~~~--- 343 (592)
T 3al0_C 273 SFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNF---AVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWEA--- 343 (592)
T ss_dssp EECCTTTCSEECCSSSSCCEEEECTTSCCCHHH---HHHHHHH-HTTCSBCC--EEGGGGGGHHHHHHHHTTTTCCC---
T ss_pred eeeecccceeeeccccCCCeEEEcCCCCeehhh---HHHHHHH-hcCCCeEE--EchhhHhCHHHHHHHHHHhCCCC---
Confidence 0113579999999999984 4445554 36889986 99999999999999999999854
Q ss_pred ceEEEEEeEEEecCCCcccccccCCccchHHHHHHH--HHHHHHHHhhcCCCC----CCChhhhHHHHHhhhhhheeeee
Q psy15414 847 TRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEG--LRRSLDKLKDKNRHT----ELTPTELSEAQQAVAYGCIKYAD 920 (1458)
Q Consensus 847 ~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~--~~~a~~~~~~~~~~~----~~~~ee~~~~ad~v~~~alRy~l 920 (1458)
+.+.|+++ +++.+|+|||||.|+ +++.++.+.. .+...+.+...|-.+ ..+.++ .++.|.
T Consensus 344 P~~~hlpl--i~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~s~~~~e~~s~~e-----------~i~~f~ 409 (592)
T 3al0_C 344 PVFMHIPL--ILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEE-----------KLQSFD 409 (592)
T ss_dssp CBCCEECC--CBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCCTTT-----------TGGGCC
T ss_pred CeEEEeee--eeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHH-----------HHhhCC
Confidence 36789887 778899999999998 6899998863 233455555444221 122211 377888
Q ss_pred ecCCCCCccccchhhHHhhhc
Q psy15414 921 LSHNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 921 Ls~~~~~d~~Fd~d~~l~~n~ 941 (1458)
+...+.++..||++++..+|+
T Consensus 410 ~~~i~~~~~~fd~~kl~~~N~ 430 (592)
T 3al0_C 410 PKDISNKGVIFDYQKLEWVNG 430 (592)
T ss_dssp TTSBCSSCCBCCHHHHHHHHH
T ss_pred hhhcCcccceeCHHHHhhhhH
Confidence 888888899999999888764
No 31
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.77 E-value=1.5e-19 Score=225.07 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=118.8
Q ss_pred CccchHHHHHHHHHcCCCCCCCCCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHH
Q psy15414 1206 SRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 1285 (1458)
Q Consensus 1206 ~~~~~~~~~~~v~~~~~~~~~~~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~ 1285 (1458)
.+.|+.++|..|+++|..||... +++|.++|+ ||||||||+||+|+|+++..+||-
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~---------------------- 159 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRRC-FELVRVRFA-PSPTGHLHVGGARTALFNWMFARK---------------------- 159 (592)
T ss_dssp ----------------CCCCCCC-CCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH----------------------
T ss_pred ChHHHHHHHHHHHHcChhhcccC-CCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh----------------------
Confidence 35788999999999999999643 467999999 999999999999999999999972
Q ss_pred HHHHHhchhcCcCCCCCccHHHHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcccc
Q psy15414 1286 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 1365 (1458)
Q Consensus 1286 ~l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~ 1365 (1458)
|.|.+|..| ++.|+. +.+..+.+.|.+||+|+|+.|
T Consensus 160 --------------~~G~~ilRi----------------------------eDtD~~--r~~~~~~~~I~~dL~wlGl~~ 195 (592)
T 3al0_C 160 --------------EGGKFILRI----------------------------EDTDTE--RSSREYEQQILESLRWCGLDW 195 (592)
T ss_dssp --------------HTCEEEECB----------------------------CCCCSS--SCCHHHHHHHHHHHHHTTCCC
T ss_pred --------------cCCcEEEEe----------------------------cCcChh--hccHHHHHHHHHHHHHcCCCC
Confidence 223222111 111111 122346789999999999999
Q ss_pred Ce---------eEeccccchhHHHHHHHHHHHHHCCCeec-----------------------cCCC---cc--------
Q psy15414 1366 NV---------TLTERGESFYQKHMEQLVPYLEKKGLLEL-----------------------DDGR---KI-------- 1402 (1458)
Q Consensus 1366 d~---------~f~esges~~~~~v~~~~~~L~~~G~~Ye-----------------------~~ga---~~-------- 1402 (1458)
|. .|.|| .+. +.|.+++++|.++|++|+ ++|. +|
T Consensus 196 D~~~~~gG~~gp~~qS--er~-~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~ 272 (592)
T 3al0_C 196 DEGPDIGGDFGPYRQS--ERL-EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKT 272 (592)
T ss_dssp SBBTTTBCTTCCCBST--TCH-HHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCC
T ss_pred CCCCCcCCCCCCeeee--CCH-HHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCc
Confidence 98 36666 553 689999999999999997 4563 32
Q ss_pred cc------------cccCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEeecccccccc
Q psy15414 1403 MW------------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRSYHQV 1456 (1458)
Q Consensus 1403 ~~------------gddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~~dhhg~~~~ 1456 (1458)
.| ++.+|+ ||.|+||.|||+.+.+ .+... +|+++||+|.|||++.++
T Consensus 273 ~~~D~v~G~~~~~~~~~~D~---Vl~R~dg~ptY~~a~v---vDD~~-~githvirG~D~~~~t~~ 331 (592)
T 3al0_C 273 SFEDLLKGYMEFDNSTLEDF---IIMKSNGFPTYNFAVV---VDDHL-MRISHVFRGEDHLSNTPK 331 (592)
T ss_dssp EECCTTTCSEECCSSSSCCE---EEECTTSCCCHHHHHH---HHHHH-TTCSBCCEEGGGGGGHHH
T ss_pred eeeecccceeeeccccCCCe---EEEcCCCCeehhhHHH---HHHHh-cCCCeEEEchhhHhCHHH
Confidence 23 567888 9999999999986643 34454 799999999999999875
No 32
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.73 E-value=5.6e-17 Score=198.16 Aligned_cols=227 Identities=15% Similarity=0.164 Sum_probs=162.4
Q ss_pred CcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHH
Q psy15414 213 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 292 (1458)
Q Consensus 213 ~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~ 292 (1458)
+.+|.+.++||||.+++||||+|++|+||+|+|+|++.||+|..+++++|+|..| +.
T Consensus 20 ~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki---~~-------------------- 76 (461)
T 1li5_A 20 AGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI---IK-------------------- 76 (461)
T ss_dssp TTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHH---HH--------------------
T ss_pred CCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHH---HH--------------------
Confidence 3479999999999999999999999999999999999999999999999999432 11
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhccee-cc-cchhhhhhhHHHHHHH
Q psy15414 293 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TE-RGESFYQKHMEQLVPY 370 (1458)
Q Consensus 293 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f-~~-~gEs~y~~~~~~vv~~ 370 (1458)
.+. +.|. .|+.+++...+.|.+.|++|||.+ +. ..+|.|.+.+.++++.
T Consensus 77 ----~A~--------------------~~g~-----~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~ 127 (461)
T 1li5_A 77 ----RAN--------------------ENGE-----SFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQ 127 (461)
T ss_dssp ----HHH--------------------HTTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHH
T ss_pred ----HHH--------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHH
Confidence 110 1122 278999999999999999999998 43 3567788889999999
Q ss_pred HHHCCCeeec-CCCeEEecCC--------------------------C-CCCceEEEec--CCccccchh--------hH
Q psy15414 371 LEKKGLLELD-DGRKIMWGED--------------------------R-GSIPMTIVKS--DGGFTYDTS--------DL 412 (1458)
Q Consensus 371 L~~kg~~~~~-dGa~~~~~~~--------------------------~-~~~~~vl~kS--DG~~tY~t~--------Di 412 (1458)
|.++|++|+. +|+++....+ + ++.+.++-|+ +|.++|.+. -|
T Consensus 128 L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhi 207 (461)
T 1li5_A 128 LIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHI 207 (461)
T ss_dssp HHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSH
T ss_pred HHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccc
Confidence 9999999998 9988743211 0 1135677776 788888662 02
Q ss_pred HHH--HHHhhhcCCCEEEE--ecCCchHHHHHHHHHHHHHHcCCCCCCCccccccc----cccCCCcccccCHHHHHHHH
Q psy15414 413 AAI--RQRIEEEKADWIVY--VTDHRSYHQVLQAIAEEEKKQGISSSSSSQTKGTA----KKMNVPVRDRMSVRDYLSDV 484 (1458)
Q Consensus 413 A~~--~~r~~~~~~d~iIy--v~D~~~~~~~~~a~~~a~~~~g~~~~~~~~~~G~~----~kmskr~gt~~~l~~~L~el 484 (1458)
++. ..++ .+....|. +.|+.-+|+....+... ...|++.....++.|.. .||||+.|+++++.+.+++.
T Consensus 208 ecsam~~~~--lg~~~dih~gG~Dl~fpH~~~~~aq~~-a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~ 284 (461)
T 1li5_A 208 ECSAMNCKQ--LGNHFDIHGGGSDLMFPHHENEIAQST-CAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYY 284 (461)
T ss_dssp HHHHHHHHH--HCSSEEEEECBGGGTTTHHHHHHHHHH-HHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTS
T ss_pred hhHHHHHHH--hCCCceEEeccCccCchHHHHHHHHHH-HhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhC
Confidence 222 2232 24445566 57754333323222211 11476443323333432 39999999999999999988
Q ss_pred Hhhhhhhccc
Q psy15414 485 FTHAVQVAFP 494 (1458)
Q Consensus 485 l~dAi~~a~~ 494 (1458)
..+++|..+.
T Consensus 285 g~dalR~~ll 294 (461)
T 1li5_A 285 DAETVRYFLM 294 (461)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8899998754
No 33
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.70 E-value=1.5e-16 Score=198.94 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=154.3
Q ss_pred CcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHH
Q psy15414 213 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 292 (1458)
Q Consensus 213 ~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~ 292 (1458)
++++.|....|+|+||+||||+|++++||+|+|++++.||+|..+++++|+|.++-..+...
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~------------------ 85 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE------------------ 85 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH------------------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc------------------
Confidence 45899999999999999999999999999999999999999999999999999875433211
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHHHH
Q psy15414 293 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVP 369 (1458)
Q Consensus 293 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~vv~ 369 (1458)
.. + ++.+++...+.|++.+++|||.+|. ..+..|.+.+.++++
T Consensus 86 ----------g~------------------~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~ 131 (536)
T 4dlp_A 86 ----------GI------------------T------PRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQ 131 (536)
T ss_dssp ----------TS------------------C------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred ----------CC------------------C------HHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHH
Confidence 00 1 2345667778889999999999984 233457788999999
Q ss_pred HHHHCCCeeecCCCeEEecC------C-----------------------------------------------------
Q psy15414 370 YLEKKGLLELDDGRKIMWGE------D----------------------------------------------------- 390 (1458)
Q Consensus 370 ~L~~kg~~~~~dGa~~~~~~------~----------------------------------------------------- 390 (1458)
+|.++|++|+.++..+.... +
T Consensus 132 ~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~ 211 (536)
T 4dlp_A 132 AMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAE 211 (536)
T ss_dssp HHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHH
T ss_pred HHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHH
Confidence 99999999987655431000 0
Q ss_pred ----------CCCCceEEEec-------------CCccccchhhHHHHH--------HHhhh-cCCCEEEEecCCchHHH
Q psy15414 391 ----------RGSIPMTIVKS-------------DGGFTYDTSDLAAIR--------QRIEE-EKADWIVYVTDHRSYHQ 438 (1458)
Q Consensus 391 ----------~~~~~~vl~kS-------------DG~~tY~t~DiA~~~--------~r~~~-~~~d~iIyv~D~~~~~~ 438 (1458)
.+..+..|.|+ ++.++++..+++|+- .++++ +..|-.+-+.|+..+|.
T Consensus 212 ~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~ 291 (536)
T 4dlp_A 212 RRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHA 291 (536)
T ss_dssp HHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHH
T ss_pred HHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHH
Confidence 02235677776 455677777777742 23333 25565555789887655
Q ss_pred HHH-HHHHHHHHcCCCCCCCccccc----cccccCCCcccccCHHHHHHHHHhhhhhhccc
Q psy15414 439 VLQ-AIAEEEKKQGISSSSSSQTKG----TAKKMNVPVRDRMSVRDYLSDVFTHAVQVAFP 494 (1458)
Q Consensus 439 ~~~-a~~~a~~~~g~~~~~~~~~~G----~~~kmskr~gt~~~l~~~L~ell~dAi~~a~~ 494 (1458)
.+. +.+.+ +|+.+.....-.| ...|||||.||.++..+.+++.+.||+|..+.
T Consensus 292 ~~~~a~l~a---~g~~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll 349 (536)
T 4dlp_A 292 VYWPAFLMS---AQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLM 349 (536)
T ss_dssp THHHHHHHH---TTCCCCSCEEEECCEEC------------CCHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHH---CCCCCCcEEEeeeeEeeCCceecccCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 443 33333 6875433222112 12399999999999999999999999998764
No 34
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.70 E-value=3.4e-17 Score=161.13 Aligned_cols=103 Identities=27% Similarity=0.493 Sum_probs=83.3
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCCCcccccccccccCCccccccchhHHhhHHhhhcCCCCCHHHHHHHHHHHHhhhh
Q psy15414 84 RMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSEL 163 (1458)
Q Consensus 84 ~~~~~~~l~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~~~~GD~~~n~A~~lak~~k~~~~~~~P~~iA~~i~~~l~~~l 163 (1458)
.|++++.+.+.+.+++..+.-.. ...+.++.|+ +++|||||||+||.|||.+ +++|++||++|++.|
T Consensus 3 ~M~i~~~l~~~i~~al~~~~~~~-~~~~~ve~p~---~~~~GD~a~n~a~~lak~~-----~~~P~~iA~~i~~~l---- 69 (109)
T 3gdz_A 3 AMNIQALLSEKVSQALIAAGAPA-DCEPQVRQSA---KVQFGDYQANGVMAVAKKL-----GMAPRQLAEQVLSHL---- 69 (109)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCT-TCCCCEEECS---SGGGCSEEECCHHHHHHHT-----TSCHHHHHHHHHHHC----
T ss_pred ccCHHHHHHHHHHHHHHHcCCCc-cCCceeecCC---CCCcceeecHHHHHHHHHh-----CCCHHHHHHHHHHhc----
Confidence 48899999999999997752111 1234455554 3589999999999999998 799999999999875
Q ss_pred ccCCccccchheeeeeCCceeEEeeCHHHHHHHHHHHHHc
Q psy15414 164 ATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 203 (1458)
Q Consensus 164 ~~~~~~~~~i~~vevagpGfIN~~l~~~~~~~~l~~i~~~ 203 (1458)
+.+ +.|++++|+|||||||+|++.+|.+.+.+++..
T Consensus 70 ~~~----~~i~~vevagpGFINf~l~~~~~~~~l~~il~~ 105 (109)
T 3gdz_A 70 DLN----GIANKVEIAGPGFINIFLDPAFLADNVNRALQS 105 (109)
T ss_dssp CCT----TTEEEEEEETTTEEEEEECHHHHHHHHHHHHTT
T ss_pred CcC----CcEeEEEEeCCCeEEEEECHHHHHHHHHHHHhc
Confidence 222 368999999999999999999999999998743
No 35
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.70 E-value=2.1e-15 Score=199.57 Aligned_cols=162 Identities=8% Similarity=0.041 Sum_probs=112.3
Q ss_pred EEEeeCCccccHHHHHHHHH--H-cCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHHHHHHHHHHHHHHhhcC
Q psy15414 818 VYVTDLGQGVHFRLLEECAK--K-AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 894 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~--a-lG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DLLde~~~~a~~~~~~~~ 894 (1458)
+|+.|.||... ...+.++. + .|. .++...+.|++| |+. +|+|||||+||+|+|.|++++++
T Consensus 606 i~~~G~D~i~~-H~~~~~~~~~a~~~~-~~~pk~v~~~G~--v~~-~G~KMSKS~GNvv~p~d~i~~yG----------- 669 (967)
T 1wz2_A 606 WRCSGKDLIPN-HLTFFIFNHVAIFRE-EHWPKGIAVNGF--GTL-EGQKMSKSKGNVLNFIDAIEENG----------- 669 (967)
T ss_dssp EEEEEGGGTTT-HHHHHHHHHHHHSCS-TTSCCCEEEECC--EEE-SSSCCCTTTCCCCBHHHHHHTTC-----------
T ss_pred EEeeeeCcchh-HHHHHHHHHHHHcCc-ccccceEEEeeE--Eee-CCEEccccccCCCCHHHHHHHhC-----------
Confidence 67777776421 11111221 2 342 233467888888 444 78999999999999999999774
Q ss_pred CCCCCChhhhHHHHHhhhhhheeeeee-cCCCCCccccchhhHHhhhcCcHHHHHHHHHHHHHHHHHhCCCcchhhhhcc
Q psy15414 895 RHTELTPTELSEAQQAVAYGCIKYADL-SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQ 973 (1458)
Q Consensus 895 ~~~~~~~ee~~~~ad~v~~~alRy~lL-s~~~~~d~~Fd~d~~l~~n~n~g~ylqYa~aRi~SIlrK~~~~~~~i~~~~~ 973 (1458)
.+++||+++ +..+.+|++||++.+... ++++ .|+.+++++..... .+
T Consensus 670 ------------------aDalR~~ll~~~~~~~d~~fs~~~~~~~----~~~l----~rl~n~~~~~~~~~--~~---- 717 (967)
T 1wz2_A 670 ------------------ADVVRLYIMSLAEHDSDFDWRRKEVGKL----RKQI----ERFYELISQFAEYE--VK---- 717 (967)
T ss_dssp ------------------HHHHHHHHHHHCCTTCCEEECHHHHHHH----HHHH----HHHHHHHHHHHSSC--CC----
T ss_pred ------------------hHHHHHHHHhCCCCCCCcccCHHHHHHH----HHHH----HHHHHHHHHHhcCC--CC----
Confidence 246899997 466799999999876543 2333 57777766542110 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHhhhhhcc
Q psy15414 974 STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL-YDISTAFSEFYDNCY 1029 (1458)
Q Consensus 974 ~~~~~l~~~~e~~Ll~~l~~f~~~v~~a~~~~~p~~l~~yL-~~LA~~fN~fy~~~~ 1029 (1458)
....+ .+.++.++..+..+...+.+++++++++.++..+ +.+...+|.|.+.++
T Consensus 718 -~~~~~-~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k 772 (967)
T 1wz2_A 718 -GNVEL-KDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE 772 (967)
T ss_dssp -CCCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred -CcccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01112 3567888899999999999999999999999865 699999999887764
No 36
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.68 E-value=1.4e-16 Score=200.07 Aligned_cols=228 Identities=16% Similarity=0.166 Sum_probs=157.4
Q ss_pred CCCcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhh
Q psy15414 211 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 290 (1458)
Q Consensus 211 ~~~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~ 290 (1458)
++++++.|...+|||+||+||||+|++++||+|||.++..||+|..+.+++|+|+++-..+...
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~---------------- 86 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ---------------- 86 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT----------------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc----------------
Confidence 3456899999999999999999999999999999999999999999999999999875433211
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHH
Q psy15414 291 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQL 367 (1458)
Q Consensus 291 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~v 367 (1458)
.. + ++.+++...+.|++.+++|||+||. ..+..+.+.+.++
T Consensus 87 ------------g~------------------~------p~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~ 130 (564)
T 3kfl_A 87 ------------GV------------------S------PMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDI 130 (564)
T ss_dssp ------------TC------------------C------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHH
T ss_pred ------------CC------------------C------HHHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHH
Confidence 00 0 1346677788899999999999985 2344677899999
Q ss_pred HHHHHHCCCeeecCCCeEEec--------------------------------------------C--------------
Q psy15414 368 VPYLEKKGLLELDDGRKIMWG--------------------------------------------E-------------- 389 (1458)
Q Consensus 368 v~~L~~kg~~~~~dGa~~~~~--------------------------------------------~-------------- 389 (1458)
+++|.++|++|+.++..+... +
T Consensus 131 ~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~ 210 (564)
T 3kfl_A 131 WKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP 210 (564)
T ss_dssp HHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT
T ss_pred HHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC
Confidence 999999999987533221000 0
Q ss_pred C----------------CCCCceEEEe---c--------------------CCccccchhhHHHHHHH---------h--
Q psy15414 390 D----------------RGSIPMTIVK---S--------------------DGGFTYDTSDLAAIRQR---------I-- 419 (1458)
Q Consensus 390 ~----------------~~~~~~vl~k---S--------------------DG~~tY~t~DiA~~~~r---------~-- 419 (1458)
+ .+..+..|.| + |+..+|+|. ++|+-.+ +
T Consensus 211 ~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~-~~~~~~~~~~~~~~~~~~~ 289 (564)
T 3kfl_A 211 NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTG-ALTRVATDGTETLDEDHHA 289 (564)
T ss_dssp TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHH-HHEEECTTSCEEECSSSTT
T ss_pred CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHH-hCccccccccccchhcchh
Confidence 0 0123455666 2 333444443 3331111 2
Q ss_pred hh-cCCCEEEEecCCchHHHHHH-HHHHHHHHcCCCCCCCcccccc----ccccCCCcccccCHHHHHHHHHhhhhhhcc
Q psy15414 420 EE-EKADWIVYVTDHRSYHQVLQ-AIAEEEKKQGISSSSSSQTKGT----AKKMNVPVRDRMSVRDYLSDVFTHAVQVAF 493 (1458)
Q Consensus 420 ~~-~~~d~iIyv~D~~~~~~~~~-a~~~a~~~~g~~~~~~~~~~G~----~~kmskr~gt~~~l~~~L~ell~dAi~~a~ 493 (1458)
++ +..|-.+-+.|+..+|..+- +.+.+ +|+.+.....-.|. ..||||+.||.++..+.+++...|++|..+
T Consensus 290 ~~~wp~dv~~~GkDii~FH~~~wpa~L~a---~g~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~l 366 (564)
T 3kfl_A 290 LNRWPADVHVVGKDILKFHAIYWPAFLMS---AELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFL 366 (564)
T ss_dssp TTCCSCSEEEEEGGGHHHHHTHHHHHHHH---TTCCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHH
T ss_pred hhcCccceEEEeecccchHHHHHHHHHHh---CCCCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHH
Confidence 21 24464455688877665443 34433 68765433222222 249999999999999999999999999875
Q ss_pred c
Q psy15414 494 P 494 (1458)
Q Consensus 494 ~ 494 (1458)
.
T Consensus 367 l 367 (564)
T 3kfl_A 367 M 367 (564)
T ss_dssp H
T ss_pred H
Confidence 3
No 37
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.65 E-value=1.8e-15 Score=184.55 Aligned_cols=247 Identities=16% Similarity=0.138 Sum_probs=171.4
Q ss_pred eEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHH
Q psy15414 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 684 (1458)
Q Consensus 605 kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~i 684 (1458)
+|.+=|. |.|||+|||||+|++++--..+| .+....+--|.|.-. ..
T Consensus 25 ~v~~RFA-PsPtG~LHiG~~rtal~n~l~Ar-----~~~G~filRieDtD~--------------~R------------- 71 (488)
T 3afh_A 25 LVRVRFA-PSPTGHLHVGGARTALFNWMFAR-----KEGGKFILRIEDTDT--------------ER------------- 71 (488)
T ss_dssp CCEEEEC-CCCSSSCBHHHHHHHHHHHHHHH-----HHTCEEEECBCCCCT--------------TT-------------
T ss_pred CceEEEC-CCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEEeeCCc--------------cc-------------
Confidence 3666665 99999999999999985554444 355556666666521 00
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec----------ccccccchhH
Q psy15414 685 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE----------RGESFYQKHM 754 (1458)
Q Consensus 685 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~----------~geS~~~~~v 754 (1458)
+.+ -+.+.+.+.+..||+..+. ...|.+.+..
T Consensus 72 ---------~~~-----------------------------~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~~y 113 (488)
T 3afh_A 72 ---------SSR-----------------------------EYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIY 113 (488)
T ss_dssp ---------CCH-----------------------------HHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHH
T ss_pred ---------ccH-----------------------------HHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHHHH
Confidence 000 1234566777889997654 2346666778
Q ss_pred HHHHHHHHHcCCeEe-----------------------eCCc---EEEEcCC-----------------CCCCCcEEEcC
Q psy15414 755 EQLVPYLEKKGLLEL-----------------------DDGR---KIMWGED-----------------RGSIPMTIVKS 791 (1458)
Q Consensus 755 ~~vi~~L~~kG~~ye-----------------------~dGa---~~~~~d~-----------------~d~~~~vL~ks 791 (1458)
.+++++|.++|++|. .+|. +.+..++ .+-.++||+|+
T Consensus 114 ~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~ 193 (488)
T 3afh_A 114 REYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKS 193 (488)
T ss_dssp HHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEECT
T ss_pred HHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEeecCCCCCCeEEEec
Confidence 899999999999996 2452 2222220 00125799999
Q ss_pred CCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCC
Q psy15414 792 DGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD 871 (1458)
Q Consensus 792 DGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gn 871 (1458)
||.|||. +|...+.. ..+++++| +|.||..+.+++..+++++|+.. +.+.|+++ |++.+|+|||||.|+
T Consensus 194 DG~PtY~---lA~vVDD~-~mgIThVi--RG~D~l~~tp~q~~l~~aLG~~~---P~f~H~pl--i~~~~g~KLSKR~g~ 262 (488)
T 3afh_A 194 NGFPTYN---FAVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWEA---PVFMHIPL--ILGSDRTPLSKRHGA 262 (488)
T ss_dssp TSCBCHH---HHHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCCC---CEEEEECC--EECTTSSBCCTTTSC
T ss_pred CCCeehh---hHHHHHHH-hcCCCEEE--EchhhhhCHHHHHHHHHHcCCCC---CeEEEEee--eeCCCCCcccCcCCc
Confidence 9999998 45555655 36899996 99999999999999999999854 47889888 778899999999998
Q ss_pred ccchHHHHHHH--HHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhhc
Q psy15414 872 TVKLSELLDEG--LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 941 (1458)
Q Consensus 872 vI~l~DLLde~--~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n~ 941 (1458)
+++.++.+.. .+...+.+...|-.+.-+ +.....+ .++.|++...+.++..||++++..+|+
T Consensus 263 -~~l~~~r~~G~~peal~n~l~~lG~s~~~~--e~~s~~e-----~i~~f~~~~i~~~~~~fd~~kl~~~N~ 326 (488)
T 3afh_A 263 -TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEE-----KLQSFDPKDISNKGVIFDYQKLEWVNG 326 (488)
T ss_dssp -CBHHHHHHHTCCHHHHHHHHHHTTCCCSSC--SCCCHHH-----HGGGCCGGGSCSSCEECCHHHHHHHHH
T ss_pred -ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHH-----HHhhCChhhcCccccccChHHhhhccH
Confidence 5899998863 233455555544321100 1111112 377888998888999999999888864
No 38
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.65 E-value=5.1e-17 Score=198.48 Aligned_cols=188 Identities=16% Similarity=0.114 Sum_probs=125.9
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHH------HHHcCCcEEEEeeeCCcccHHHHHHHHhchh---cCcCC-C
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL------LEYLGHDVVRLNHVGDWGTQFGMLIAHLQDK---FPDYL-T 1300 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~------l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~---~p~~~-~ 1300 (1458)
..|+++++|||||||||+||+|+|++++++||. |+.. |+-++.|+++++.||-.--.|+-.. .|+.+ |
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRie--DtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~ 88 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIE--DTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGD 88 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBC--CSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCT
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe--cCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCC
Confidence 357899999999999999999999999999999 6655 6667999999999996655566433 45432 4
Q ss_pred CCcc--------HHHHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcc--ccCeeEe
Q psy15414 1301 KSPP--------IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD--RLNVTLT 1370 (1458)
Q Consensus 1301 ~~~~--------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv--~~d~~f~ 1370 (1458)
.|.| +.++++-+.+.|..|. + + |. ++-++.+++....+|+ .||.|++
T Consensus 89 ~g~y~QS~r~~~y~~~a~~L~~~G~aY~-----------c------~--ct----~eel~~~r~~~~~~g~~~~yd~~~s 145 (481)
T 2o5r_A 89 HGPYRQSERVEIYREHAERLVKEGKAYY-----------V------Y--AY----PEEIEEMREKLLSEGKAPHYSQEMF 145 (481)
T ss_dssp TCCCBGGGGHHHHHHHHHHHHHTTSEEE-----------E------C--CC----STTTHHHHHHHHHTTCCCCBCGGGG
T ss_pred CCceeeeccHHHHHHHHHHHHHCCCeeE-----------e------c--CC----HHHHHHHHHHHHhcCCCCCCCCchh
Confidence 4433 4455443333354331 0 0 00 0012355566677887 8999988
Q ss_pred ccccchhHHHHHHHHHHHHHCC-------------Ceec--cCCCccc-ccccCCCCCceEEecCCcccc-chhhhHHHH
Q psy15414 1371 ERGESFYQKHMEQLVPYLEKKG-------------LLEL--DDGRKIM-WGEDRGSIPMTIVKSDGGFTY-DTSDLAAIR 1433 (1458)
Q Consensus 1371 esges~~~~~v~~~~~~L~~~G-------------~~Ye--~~ga~~~-~gddkdr~~~vl~rsdG~~tY-~~~Diayh~ 1433 (1458)
++ ++..+ +..+. .+.| .+|+ .+|++|. -.+-.|+ ||+|+||+||| ||.+|.+|.
T Consensus 146 ~r--~l~~~---e~~~~-~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~---Vl~RsDG~ptY~~a~vvDD~~ 216 (481)
T 2o5r_A 146 EK--FDTPE---RRREY-EEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDF---VIMRSNGLPTYNFACVVDDML 216 (481)
T ss_dssp TT--TCCHH---HHHHH-HHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBE---EEECTTSCBCHHHHHHHHHHH
T ss_pred hh--cCCHH---HHHHH-HhcCCcceEEEEcCCCceEEEecccceeEeccccCCCe---EEEccCCCcchhhHHHHHHHh
Confidence 88 66432 22222 2333 3444 3455541 1222367 99999999999 788888884
Q ss_pred hhhhhcCCCEEEEeeccccccccc
Q psy15414 1434 QRIEEEKADWIVYVTDHRSYHQVL 1457 (1458)
Q Consensus 1434 ~K~~~rgfd~~i~~~dhhg~~~~~ 1457 (1458)
+|+++||+|+||+++.++.
T Consensus 217 -----~githvirG~D~~~~t~~q 235 (481)
T 2o5r_A 217 -----MEITHVIRGDDHLSNTLRQ 235 (481)
T ss_dssp -----TTCSEEEEEGGGHHHHHHH
T ss_pred -----CCCCeEEEChhHHHhHHHH
Confidence 4789999999999987753
No 39
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.63 E-value=7.2e-16 Score=177.43 Aligned_cols=186 Identities=15% Similarity=0.104 Sum_probs=127.1
Q ss_pred eCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhh
Q psy15414 611 SSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 690 (1458)
Q Consensus 611 ~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~ 690 (1458)
-.|+|||+|||||+|+++ .|.|.+.+|.+..+-.|.|.... .
T Consensus 10 FAPsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~--------------R------------------- 51 (298)
T 1nzj_A 10 FAPSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP--------------R------------------- 51 (298)
T ss_dssp ECCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG--------------G-------------------
T ss_pred ECcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch--------------h-------------------
Confidence 369999999999999998 56666667888888888885210 0
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--ccccccchhHHHHHHHHHHcCCeE
Q psy15414 691 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGLLE 768 (1458)
Q Consensus 691 ~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~geS~~~~~v~~vi~~L~~kG~~y 768 (1458)
+. ..+.+.+.+++..||+..+. ...|.+.+...+++++|+++|++|
T Consensus 52 ---~~-----------------------------~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY 99 (298)
T 1nzj_A 52 ---EV-----------------------------PGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSY 99 (298)
T ss_dssp ---SC-----------------------------TTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEE
T ss_pred ---hH-----------------------------HHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCcc
Confidence 00 00245677788899997753 235777788999999999999999
Q ss_pred ee--------------C------------CcEEEEcCC------------------CCCCCcEEEcCCCCccCCCcchHH
Q psy15414 769 LD--------------D------------GRKIMWGED------------------RGSIPMTIVKSDGGFTYDTSDLAA 804 (1458)
Q Consensus 769 e~--------------d------------Ga~~~~~d~------------------~d~~~~vL~ksDGt~tY~trDiA~ 804 (1458)
.. + .++.+..++ .+..++||+|+||.|||. +|+
T Consensus 100 ~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY~---la~ 176 (298)
T 1nzj_A 100 YCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN---LAV 176 (298)
T ss_dssp EECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHH---HHH
T ss_pred cCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCCCEeee---eee
Confidence 73 1 133332211 000257999999999995 899
Q ss_pred HHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHH
Q psy15414 805 IRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSEL 878 (1458)
Q Consensus 805 ~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DL 878 (1458)
+.++.. .|++++|. |.||..+.+++..+.+++|+.. ..+.|+++ +++.+|+|||||.|++ +++++
T Consensus 177 vvdD~~-~giThvIr--G~D~l~~t~~q~~l~~alG~~~---p~~~H~pl--l~~~~g~KLSKR~g~~-~v~~~ 241 (298)
T 1nzj_A 177 VVDDHF-QGVTEIVR--GADLIEPTVRQISLYQLFGWKV---PDYIHLPL--ALNPQGAKLSKQNHAP-ALPKG 241 (298)
T ss_dssp HHHHHH-TTCCEEEE--EGGGHHHHHHHHHHHHHHTCCC---CEEEEECB--CCC--------------CCCSS
T ss_pred eeEHHh-cCCCEEEe--CccccccHHHHHHHHHHcCCCC---CeEEEeee--eECCCCCcccccCCcc-ChhcC
Confidence 988874 68999885 9999999999999999999843 46789988 6677999999999987 45444
No 40
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.57 E-value=1.5e-15 Score=174.89 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhccccCe-eEeccccchhHHHHHHHHHHHHHCCCeecc--------------CC------------Cc
Q psy15414 1349 MICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYLEKKGLLELD--------------DG------------RK 1401 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~-~f~esges~~~~~v~~~~~~L~~~G~~Ye~--------------~g------------a~ 1401 (1458)
.+.+.|.+||+|+|+.||. .+.|| .+. +.|.+++++|.++|++|+- +| ++
T Consensus 55 ~~~~~I~~dL~~LGl~~D~~~~~qS--er~-~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~ 131 (298)
T 1nzj_A 55 GAAETILRQLEHYGLHWDGDVLWQS--QRH-DAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAV 131 (298)
T ss_dssp THHHHHHHHHHHTTCCCSSCCEEGG--GCH-HHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCeeee--CCH-HHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcE
Confidence 3668999999999999996 67777 543 6899999999999999972 11 22
Q ss_pred c--------cc-------------cccCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEeecccccccc
Q psy15414 1402 I--------MW-------------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRSYHQV 1456 (1458)
Q Consensus 1402 ~--------~~-------------gddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~~dhhg~~~~ 1456 (1458)
+ .| ++.+|. ||.|+||.||| ++|||.++.. +|+++||.|+||+++.++
T Consensus 132 R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~---VL~R~dG~PtY---~la~vvdD~~-~giThvIrG~D~l~~t~~ 200 (298)
T 1nzj_A 132 RIRQQHPVTQFTDQLRGIIHADEKLAREDF---IIHRRDGLFAY---NLAVVVDDHF-QGVTEIVRGADLIEPTVR 200 (298)
T ss_dssp EECCSSCCCEEEETTTEEEECCHHHHHSCC---EEECTTSCBCH---HHHHHHHHHH-TTCCEEEEEGGGHHHHHH
T ss_pred EEecCCcccceehhhCcccccCcccCCCCE---EEECCCCCEee---eeeeeeEHHh-cCCCEEEeCccccccHHH
Confidence 1 13 577888 99999999999 5899999996 899999999999987654
No 41
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.56 E-value=6.2e-14 Score=169.53 Aligned_cols=227 Identities=17% Similarity=0.085 Sum_probs=138.7
Q ss_pred cEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHH
Q psy15414 214 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 293 (1458)
Q Consensus 214 ~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~ 293 (1458)
.+|.+..++|+|.+++||||+|++|+||+|+|++++.||+|..+.+++|+|.-+-.-+
T Consensus 38 ~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A---------------------- 95 (414)
T 3c8z_A 38 PTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERA---------------------- 95 (414)
T ss_dssp SEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHH----------------------
T ss_pred CCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHH----------------------
Confidence 4689999999999999999999999999999999999999999999999984331111
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcce-ecc-cchhhhhhhHHHHHHHH
Q psy15414 294 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE-RGESFYQKHMEQLVPYL 371 (1458)
Q Consensus 294 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~-f~~-~gEs~y~~~~~~vv~~L 371 (1458)
++ .|. .|+.+++...+.|.+.+++|||. +|. ..++.|.+.+.++++.|
T Consensus 96 -------------------~~------~g~-----~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L 145 (414)
T 3c8z_A 96 -------------------ER------DGI-----DWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKL 145 (414)
T ss_dssp -------------------HH------HTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHH
T ss_pred -------------------HH------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHH
Confidence 00 011 24577888899999999999998 875 34666778899999999
Q ss_pred HHCCCeeecC----CCeEEecCCC---CC-----CceEEEe--cC-Ccc-cc---chhhHH-------------------
Q psy15414 372 EKKGLLELDD----GRKIMWGEDR---GS-----IPMTIVK--SD-GGF-TY---DTSDLA------------------- 413 (1458)
Q Consensus 372 ~~kg~~~~~d----Ga~~~~~~~~---~~-----~~~vl~k--SD-G~~-tY---~t~DiA------------------- 413 (1458)
.++|++|+.+ |+++...+.. .. ...++.. ++ |.. +| .++|.+
T Consensus 146 ~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g 225 (414)
T 3c8z_A 146 LASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRG 225 (414)
T ss_dssp HHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSE
T ss_pred HHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCC
Confidence 9999999988 9876533321 00 0011110 11 221 22 122221
Q ss_pred ---------HHHHHhhhcCCCEEEEecCCchHHHHH-HHHHHHHHHcCCCC-CCCccccccc----cccCCCcccccCHH
Q psy15414 414 ---------AIRQRIEEEKADWIVYVTDHRSYHQVL-QAIAEEEKKQGISS-SSSSQTKGTA----KKMNVPVRDRMSVR 478 (1458)
Q Consensus 414 ---------~~~~r~~~~~~d~iIyv~D~~~~~~~~-~a~~~a~~~~g~~~-~~~~~~~G~~----~kmskr~gt~~~l~ 478 (1458)
+...++-...+|-.+-+.|+.-.|+.. -+...++ .|..+ .....++|.+ .||||+.|++++..
T Consensus 226 ~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~--~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~ 303 (414)
T 3c8z_A 226 RPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESV--TGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVS 303 (414)
T ss_dssp EECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHH--HCCSCSEEEEEEECCBC-------------CBHH
T ss_pred CCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHh--cCCCCcCeEEEEcCEEecCCeEcccccCCcCCHH
Confidence 111111101233223368865333222 2222221 36532 2222333332 39999999999999
Q ss_pred HHHHH-HHhhhhhhccc
Q psy15414 479 DYLSD-VFTHAVQVAFP 494 (1458)
Q Consensus 479 ~~L~e-ll~dAi~~a~~ 494 (1458)
+.+++ ...+++|..+.
T Consensus 304 ~ll~~g~g~D~lR~~ll 320 (414)
T 3c8z_A 304 QLRAQGVDPSAIRLGLF 320 (414)
T ss_dssp HHHHTTCCHHHHHHHHH
T ss_pred HHhhccCCcchheeEEE
Confidence 99998 88899998764
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.53 E-value=7.6e-14 Score=170.66 Aligned_cols=243 Identities=17% Similarity=0.107 Sum_probs=167.5
Q ss_pred CCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhhhc
Q psy15414 612 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 691 (1458)
Q Consensus 612 SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~ 691 (1458)
.|.|||+|||||+|++++ |+|.+.+|.+..+-.|.|.-. ..
T Consensus 7 APSPtG~lHiG~artal~-----n~l~Ar~~~G~filRieDtD~--------------~R-------------------- 47 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVF-----NWLYARHRGGKFILRIEDTDR--------------ER-------------------- 47 (492)
T ss_dssp CCCTTSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCSS--------------SS--------------------
T ss_pred CCCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEeeCCc--------------cc--------------------
Confidence 589999999999999987 677777899999999999621 10
Q ss_pred cCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--ccccccchhHHHHHHHHHHcCCeEe
Q psy15414 692 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGLLEL 769 (1458)
Q Consensus 692 ~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~geS~~~~~v~~vi~~L~~kG~~ye 769 (1458)
+.+ -+.+.+.+.+..||+..+. ...|.+.+...+++++|.++|++|.
T Consensus 48 --~~~-----------------------------~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 48 --SRP-----------------------------EYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp --CCH-----------------------------HHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred --cch-----------------------------HHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCceE
Confidence 000 0234566667788885432 2256666777888888888888883
Q ss_pred e-----------------------C-----------------Cc--EE-EEcCC------------------CCC-CCcE
Q psy15414 770 D-----------------------D-----------------GR--KI-MWGED------------------RGS-IPMT 787 (1458)
Q Consensus 770 ~-----------------------d-----------------Ga--~~-~~~d~------------------~d~-~~~v 787 (1458)
. + |. ++ +..+. .+- .++|
T Consensus 97 c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~V 176 (492)
T 2cfo_A 97 CYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMV 176 (492)
T ss_dssp ECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEE
T ss_pred ecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCCeE
Confidence 1 1 21 11 11111 011 2589
Q ss_pred EEcCC-----CCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC
Q psy15414 788 IVKSD-----GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR 862 (1458)
Q Consensus 788 L~ksD-----Gt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G 862 (1458)
|+|+| |.|||. +|...+... .+.+++| .|.||..+-++...+.+++|+.. +.|.|+++ |++.+|
T Consensus 177 l~R~d~~p~~G~PtY~---la~vvDD~~-~gIthvi--RG~D~~~~t~~q~~l~~alg~~~---P~~~H~pl--il~~~g 245 (492)
T 2cfo_A 177 IARAAPRGEIGYPLYN---LVVVVDDIA-MGITDVI--RGEDHIGNTPKQILLYEALGATP---PNFAHTPL--ILNSTG 245 (492)
T ss_dssp EECSCCTTSCCCBCHH---HHHHHHHHH-TTCSEEE--EEGGGTTHHHHHHHHHHHTTCCC---CEEEEECC--EECSSS
T ss_pred EEEecCCCCCCceeeh---hhhhhhhhc-CCCCeEE--EchhhhhCHHHHHHHHHHcCCCC---ceEEEeee--EECCCC
Confidence 99999 999997 566666653 6889986 99999999999999999999843 47899998 778899
Q ss_pred cccccccCCccchHHHHHHH--HHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHHhhh
Q psy15414 863 KKFKTRSGDTVKLSELLDEG--LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 940 (1458)
Q Consensus 863 ~KMSKR~GnvI~l~DLLde~--~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l~~n 940 (1458)
+|||||.|++ ++.++.+.. .+..++.+...|-.+.-+..++....+ .+..|++...+.++..||++++..+|
T Consensus 246 ~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~~~e-----~i~~f~~~~i~~~~~~~d~~kl~~~N 319 (492)
T 2cfo_A 246 QKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDL-----AAKHFSFERINKAGARFDWDKLNWLN 319 (492)
T ss_dssp SBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHH-----HHHHCCSTTBCSSCEECCHHHHHHHH
T ss_pred CEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccCHHH-----HHhhcChhhcCccccccCHHHHHHHH
Confidence 9999999987 788888763 233455555444221000011111111 25667788777888999999988876
Q ss_pred c
Q psy15414 941 G 941 (1458)
Q Consensus 941 ~ 941 (1458)
+
T Consensus 320 ~ 320 (492)
T 2cfo_A 320 R 320 (492)
T ss_dssp H
T ss_pred H
Confidence 4
No 43
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.53 E-value=1.3e-13 Score=167.21 Aligned_cols=244 Identities=14% Similarity=0.143 Sum_probs=173.4
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
++|.+=|. |.|||+|||||+|++++....+| ++....+-.|.|... ..
T Consensus 24 ~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar-----~~~G~filRieDtD~--------------~R------------ 71 (490)
T 4g6z_A 24 RPVRTRFA-PSPTGFIHLGNIRSALYPWAFAR-----KMKGTFVLRIEDTDV--------------ER------------ 71 (490)
T ss_dssp CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCG--------------GG------------
T ss_pred CCceEEeC-CCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEeCCCCc--------------cc------------
Confidence 34677776 99999999999999988555555 566677777777421 00
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec--ccccccchhHHHHHHHH
Q psy15414 684 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYL 761 (1458)
Q Consensus 684 iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~--~geS~~~~~v~~vi~~L 761 (1458)
. +.-+.+.+.+++..||+..+. ...|.+.+...+++++|
T Consensus 72 ----------~-----------------------------~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~~L 112 (490)
T 4g6z_A 72 ----------S-----------------------------SQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQM 112 (490)
T ss_dssp ----------C-----------------------------CHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHH
T ss_pred ----------c-----------------------------cHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHHH
Confidence 0 011344567778889996542 23577777889999999
Q ss_pred HHcCCeEee----------------CC-----------------------c--EE-EEcCC------------------C
Q psy15414 762 EKKGLLELD----------------DG-----------------------R--KI-MWGED------------------R 781 (1458)
Q Consensus 762 ~~kG~~ye~----------------dG-----------------------a--~~-~~~d~------------------~ 781 (1458)
.++|++|.. .| . ++ +..+. .
T Consensus 113 i~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~~ 192 (490)
T 4g6z_A 113 QEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISNE 192 (490)
T ss_dssp HHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEEEEEGG
T ss_pred HHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeeeeeccc
Confidence 999999821 01 0 11 00000 0
Q ss_pred CCCCcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCC
Q psy15414 782 GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED 861 (1458)
Q Consensus 782 d~~~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~ 861 (1458)
.--++||.|+||.|||. +|...+... .+.+++| .|.||....+++..+.++|||.. +.+.|+++ |++.+
T Consensus 193 ~~~D~Vl~R~DG~ptY~---lA~vVDD~~-mgIThVi--RG~D~l~~tprq~~l~~aLG~~~---P~f~HlpL--i~~~~ 261 (490)
T 4g6z_A 193 ELDDLVVARPDGTPMYN---FCVVVDDLD-MGITHVI--RGDDHVNNTPRQINILRALGGEV---PVYAHLPT--VLNEQ 261 (490)
T ss_dssp GCCCCEEECTTSCBCHH---HHHHHHHHH-TTCCEEE--EEGGGGGGHHHHHHHHHHTTCCC---CEEEEECC--EECTT
T ss_pred cCCCeEEEeeCCCccch---hHHHHHHHh-cCCCEEE--eccccccChHHHHHHHHHcCCCC---CeEEEecc--eeCCC
Confidence 00257899999999998 677777764 6899997 79999999999999999999954 46889988 77889
Q ss_pred CcccccccCCccchHHHHHHH--HHHHHHHHhhcCCC----CCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhh
Q psy15414 862 RKKFKTRSGDTVKLSELLDEG--LRRSLDKLKDKNRH----TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDK 935 (1458)
Q Consensus 862 G~KMSKR~GnvI~l~DLLde~--~~~a~~~~~~~~~~----~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~ 935 (1458)
|+|||||.|. +++.++.+.. .+...+.+...|-. +.++.+| .+..|++..-..++..||+++
T Consensus 262 g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e-----------li~~F~~~~~~~~~~~fd~~K 329 (490)
T 4g6z_A 262 GEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQ-----------FVEWFDLEHLGKSPAQYDHNK 329 (490)
T ss_dssp SSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHH-----------HHHHCCGGGBCSSCEECCHHH
T ss_pred CCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHH-----------HHhhCCHhhCCCCCCccCHHH
Confidence 9999999995 7899988763 23345666555422 1233332 256788888888999999999
Q ss_pred HHhhhc
Q psy15414 936 MLDDRG 941 (1458)
Q Consensus 936 ~l~~n~ 941 (1458)
+..+|+
T Consensus 330 L~~~N~ 335 (490)
T 4g6z_A 330 LNWLNN 335 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988864
No 44
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.51 E-value=1e-13 Score=171.97 Aligned_cols=226 Identities=15% Similarity=0.149 Sum_probs=149.3
Q ss_pred cEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHH
Q psy15414 214 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 293 (1458)
Q Consensus 214 ~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~ 293 (1458)
+++.|...+|||+|++||||+|++++||+++|.++..||+|.+.--+.|.|.-+-
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~------------------------- 57 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVY------------------------- 57 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHH-------------------------
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHH-------------------------
Confidence 4799999999999999999999999999999999999999999865555553221
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHHHHH
Q psy15414 294 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPY 370 (1458)
Q Consensus 294 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~vv~~ 370 (1458)
.++.+ .|.+ ++.+++...+.+.+.+++|||++|. ..+..|.+.+..+++.
T Consensus 58 --~~a~~--------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~ 110 (500)
T 2d5b_A 58 --RAAQA--------------------AGED-----PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKK 110 (500)
T ss_dssp --HHHHH--------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHH
T ss_pred --HHHHH--------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 11100 0111 2457888888999999999999884 2345588889999999
Q ss_pred HHHCCCeeec--CCCeEE----ecCCC-----------------------------------------------------
Q psy15414 371 LEKKGLLELD--DGRKIM----WGEDR----------------------------------------------------- 391 (1458)
Q Consensus 371 L~~kg~~~~~--dGa~~~----~~~~~----------------------------------------------------- 391 (1458)
|.++|++|+. .|.+|. +..+.
T Consensus 111 L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~ 190 (500)
T 2d5b_A 111 VYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV 190 (500)
T ss_dssp HHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHH
T ss_pred HHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHH
Confidence 9999999976 344331 11110
Q ss_pred ------CCCceEEEe--cC---Cccc----------cchhh------HHHHHHH-hh-hcCCCEEEEecCCchHHHHHH-
Q psy15414 392 ------GSIPMTIVK--SD---GGFT----------YDTSD------LAAIRQR-IE-EEKADWIVYVTDHRSYHQVLQ- 441 (1458)
Q Consensus 392 ------~~~~~vl~k--SD---G~~t----------Y~t~D------iA~~~~r-~~-~~~~d~iIyv~D~~~~~~~~~- 441 (1458)
+..+..|-| ++ |++. ++.+. ++++... ++ .++.|..+-+.||..+|+.+.
T Consensus 191 ~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~ 270 (500)
T 2d5b_A 191 LAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWP 270 (500)
T ss_dssp HHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHHHHHTHHH
T ss_pred HHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCCeEEEEeechhhhHHHHHH
Confidence 001234444 33 5421 22222 2333211 11 135664445688887665443
Q ss_pred HHHHHHHHcCCCCCCCcccccc-----ccccCCCcccccCHHHHHHHHHhhhhhhccc
Q psy15414 442 AIAEEEKKQGISSSSSSQTKGT-----AKKMNVPVRDRMSVRDYLSDVFTHAVQVAFP 494 (1458)
Q Consensus 442 a~~~a~~~~g~~~~~~~~~~G~-----~~kmskr~gt~~~l~~~L~ell~dAi~~a~~ 494 (1458)
+.+.+ +|+.+....+..|. ..||||+.||.++..+.+++...+|+|..+.
T Consensus 271 a~~~~---~g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll 325 (500)
T 2d5b_A 271 TMLKA---AGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLL 325 (500)
T ss_dssp HHHHH---HTCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHH
T ss_pred HHHHH---cCCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHH
Confidence 33333 58755432222222 2399999999999999999999999998753
No 45
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.50 E-value=2.6e-13 Score=170.49 Aligned_cols=123 Identities=18% Similarity=0.243 Sum_probs=97.6
Q ss_pred CCCcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhh
Q psy15414 211 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 290 (1458)
Q Consensus 211 ~~~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~ 290 (1458)
+.+++..|=-.-|+|+|++||||+|++++||+|+|.++..||+|.....+.|.|.++-..+...
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---------------- 78 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---------------- 78 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH----------------
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh----------------
Confidence 3456788888889999999999999999999999999999999999999999999885433211
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHH
Q psy15414 291 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQL 367 (1458)
Q Consensus 291 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~v 367 (1458)
.. + ++.+++...+.|.+.+++|||.+|. ..+..|.+.+.++
T Consensus 79 ------------g~------------------~------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~ 122 (560)
T 3h99_A 79 ------------GI------------------T------PEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELI 122 (560)
T ss_dssp ------------TS------------------C------HHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHH
T ss_pred ------------CC------------------C------HHHHHHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHHH
Confidence 00 0 1234555667788889999999874 3344677889999
Q ss_pred HHHHHHCCCeeecCCCeE
Q psy15414 368 VPYLEKKGLLELDDGRKI 385 (1458)
Q Consensus 368 v~~L~~kg~~~~~dGa~~ 385 (1458)
+++|.++|++|+.++..+
T Consensus 123 ~~~L~~~G~iy~~~~~~~ 140 (560)
T 3h99_A 123 YSRLKENGFIKNRTISQL 140 (560)
T ss_dssp HHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHCCCEEEeeeeEe
Confidence 999999999998776654
No 46
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.50 E-value=4.3e-13 Score=163.11 Aligned_cols=133 Identities=19% Similarity=0.077 Sum_probs=100.5
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
++||+|+||.|||. +|...+... .+++++ |+|.||..+.++...+++++|+.. +.+.|+++ +++.+|+|
T Consensus 175 D~Vl~R~dg~PtY~---~a~vvDD~~-~githv--irG~D~~~~t~~q~~l~~alg~~~---p~~~h~~l--i~~~~g~k 243 (468)
T 1j09_A 175 DVVLLKSDGYPTYH---LANVVDDHL-MGVTDV--IRAEEWLVSTPIHVLLYRAFGWEA---PRFYHMPL--LRNPDKTK 243 (468)
T ss_dssp CCEEECTTSCBCHH---HHHHHHHHH-TTCCEE--EEEGGGGGGHHHHHHHHHHHTCCC---CEEEEECC--CBCTTSCB
T ss_pred CeEEEecCCCeeeh---hHHHHHHHH-CCCCeE--EEChhhhhhHHHHHHHHHHcCCCC---CeEEEeee--eeCCCCCc
Confidence 57999999999997 455556553 688998 599999999999999999999843 46778776 77789999
Q ss_pred cccccCCccchHHHHHHH--HHHHHHHHhhcCCCC-----CCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHH
Q psy15414 865 FKTRSGDTVKLSELLDEG--LRRSLDKLKDKNRHT-----ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 937 (1458)
Q Consensus 865 MSKR~GnvI~l~DLLde~--~~~a~~~~~~~~~~~-----~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l 937 (1458)
||||.|++ ++.++.+.. .+...+.+...|-.+ .++.++ .+..|.+..-+.++..||++++.
T Consensus 244 lSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~e-----------l~~~f~~~~~~~~~~~~d~~kl~ 311 (468)
T 1j09_A 244 ISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEE-----------FIQAFTWERVSLGGPVFDLEKLR 311 (468)
T ss_dssp CCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHH-----------HHHHCCGGGCCCSCCBCCHHHHH
T ss_pred cccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHH-----------HHhhCChhhcCccccccChHHhh
Confidence 99999998 899988863 233455555444321 123222 25567788777888999999988
Q ss_pred hhh
Q psy15414 938 DDR 940 (1458)
Q Consensus 938 ~~n 940 (1458)
.+|
T Consensus 312 ~~N 314 (468)
T 1j09_A 312 WMN 314 (468)
T ss_dssp HHH
T ss_pred hhc
Confidence 776
No 47
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.49 E-value=2.2e-13 Score=165.08 Aligned_cols=227 Identities=16% Similarity=0.105 Sum_probs=150.3
Q ss_pred CcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHH
Q psy15414 213 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 292 (1458)
Q Consensus 213 ~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~ 292 (1458)
+.+|.+-.++|||.+++||||+|+.|++|+|+|.++..||+|.-+..+.|+|..+-.-+.
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~-------------------- 82 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAG-------------------- 82 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHH--------------------
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHH--------------------
Confidence 457999999999999999999999999999999999999999999999999854321110
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc--cchhhhhhhHHHHHHH
Q psy15414 293 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPY 370 (1458)
Q Consensus 293 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~--~gEs~y~~~~~~vv~~ 370 (1458)
+ .|. -|+.+++...+.|.+.+++|||.++. -..+.|.+.+.+++++
T Consensus 83 ----~-----------------------~g~-----~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~ 130 (462)
T 3tqo_A 83 ----E-----------------------NKE-----SPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQK 130 (462)
T ss_dssp ----H-----------------------TTS-----CHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHH
T ss_pred ----H-----------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHH
Confidence 0 011 16788888899999999999999864 2677888889999999
Q ss_pred HHHCCCeeec-CCCeEEecCCCCC---------------------------CceEEEec--CCccccch-----------
Q psy15414 371 LEKKGLLELD-DGRKIMWGEDRGS---------------------------IPMTIVKS--DGGFTYDT----------- 409 (1458)
Q Consensus 371 L~~kg~~~~~-dGa~~~~~~~~~~---------------------------~~~vl~kS--DG~~tY~t----------- 409 (1458)
|.++|++|+. +|.++........ .+.+|-|. +|-+.+.+
T Consensus 131 L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHi 210 (462)
T 3tqo_A 131 LLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHI 210 (462)
T ss_dssp HHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHH
T ss_pred HHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCce
Confidence 9999999998 7877643322111 12233221 22222222
Q ss_pred hhHHHHHHHhhhcCCCEEEEecCCchHHH-HHHHHHHHHHHcCCCCCCCccccccc----cccCCCcccccCHHHHHHHH
Q psy15414 410 SDLAAIRQRIEEEKADWIVYVTDHRSYHQ-VLQAIAEEEKKQGISSSSSSQTKGTA----KKMNVPVRDRMSVRDYLSDV 484 (1458)
Q Consensus 410 ~DiA~~~~r~~~~~~d~iIyv~D~~~~~~-~~~a~~~a~~~~g~~~~~~~~~~G~~----~kmskr~gt~~~l~~~L~el 484 (1458)
---|....-+. ..+|-..-+.|..-.|+ ..-+-.++ ..|.+.....+++|.+ .||||+.||++++.+.+++.
T Consensus 211 Ecsam~~~~lG-~~~dih~gG~Dl~FpHheneiaqs~a--~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~ 287 (462)
T 3tqo_A 211 ECSAMSSSILG-QPFDIHGGGLDLKFPHHENEIAQSEA--GEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKES 287 (462)
T ss_dssp HHHHHHHHHHC-SSEEEEEEEGGGTTTHHHHHHHHHHH--HHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHS
T ss_pred ehHHHHHHhcC-CCeEEEccccccccHHHHhHHHHHHH--HcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhc
Confidence 11111111111 12333333456543221 11111112 1354332223344443 39999999999999999999
Q ss_pred Hhhhhhhccc
Q psy15414 485 FTHAVQVAFP 494 (1458)
Q Consensus 485 l~dAi~~a~~ 494 (1458)
..+++|..+.
T Consensus 288 g~dalR~~ll 297 (462)
T 3tqo_A 288 DVEVLRYFLL 297 (462)
T ss_dssp CHHHHHHHHH
T ss_pred ChHHhhhhhc
Confidence 9999998753
No 48
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.46 E-value=3.9e-13 Score=166.62 Aligned_cols=227 Identities=18% Similarity=0.186 Sum_probs=148.7
Q ss_pred CcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHH
Q psy15414 213 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 292 (1458)
Q Consensus 213 ~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~ 292 (1458)
++++.|...+|||||++||||+|+++++|+++|.++..||+|.++--+.|.|.-+-.-
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~---------------------- 61 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKK---------------------- 61 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTH----------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHH----------------------
Confidence 4689999999999999999999999999999999999999999987777766533110
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc---cchhhhhhhHHHHHH
Q psy15414 293 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVP 369 (1458)
Q Consensus 293 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~---~gEs~y~~~~~~vv~ 369 (1458)
+.+ .|.. ++.+++...+.+.+.+++|||++|. ..+..|.+.+.++++
T Consensus 62 -----a~~--------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~ 111 (497)
T 2csx_A 62 -----AEE--------------------LGIS-----PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFE 111 (497)
T ss_dssp -----HHH--------------------SSSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred -----HHH--------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHHHHH
Confidence 000 0110 1356788889999999999999884 245568888999999
Q ss_pred HHHHCCCeeec--CCCeEEec----CC-----------------------------------------------------
Q psy15414 370 YLEKKGLLELD--DGRKIMWG----ED----------------------------------------------------- 390 (1458)
Q Consensus 370 ~L~~kg~~~~~--dGa~~~~~----~~----------------------------------------------------- 390 (1458)
+|.++|++|+. .|.+|... .+
T Consensus 112 ~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 191 (497)
T 2csx_A 112 ECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRN 191 (497)
T ss_dssp HHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHH
T ss_pred HHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHH
Confidence 99999999976 45443110 00
Q ss_pred -------CCCCceEEEe--cC---Cccccch-hh------------HHHHHHHh-hhcCCCEEEEecCCchHHHHHH-HH
Q psy15414 391 -------RGSIPMTIVK--SD---GGFTYDT-SD------------LAAIRQRI-EEEKADWIVYVTDHRSYHQVLQ-AI 443 (1458)
Q Consensus 391 -------~~~~~~vl~k--SD---G~~tY~t-~D------------iA~~~~r~-~~~~~d~iIyv~D~~~~~~~~~-a~ 443 (1458)
.+..+..|-| ++ |+++... .+ ++++..+- +-+.+|..+-+.|+..+|+.+. +.
T Consensus 192 ~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~ 271 (497)
T 2csx_A 192 EIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAF 271 (497)
T ss_dssp HHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHH
T ss_pred HHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHH
Confidence 0011334444 33 5444310 00 11111100 1236775555678876554332 33
Q ss_pred HHHHHHcCCCCCCCccccccc----cccCCCcccccCHHHHHHHHHhhhhhhccc
Q psy15414 444 AEEEKKQGISSSSSSQTKGTA----KKMNVPVRDRMSVRDYLSDVFTHAVQVAFP 494 (1458)
Q Consensus 444 ~~a~~~~g~~~~~~~~~~G~~----~kmskr~gt~~~l~~~L~ell~dAi~~a~~ 494 (1458)
+.+ +|+.+.......|.+ .||||+.|+.++..+.+++...+|+|..+.
T Consensus 272 l~~---~g~~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll 323 (497)
T 2csx_A 272 LMS---LGYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLL 323 (497)
T ss_dssp HHH---HTCCCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHH
T ss_pred HHH---cCCCCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCCcHHHHHHHH
Confidence 333 587654433333432 399999999999999999999999998753
No 49
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.43 E-value=2.1e-12 Score=161.19 Aligned_cols=122 Identities=18% Similarity=0.161 Sum_probs=95.6
Q ss_pred CCcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhH
Q psy15414 212 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 291 (1458)
Q Consensus 212 ~~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l 291 (1458)
..+++.|--.-|||+|++||||+|++++||+|+|.++..||+|..+--+.|+|.-+-.
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~---------------------- 67 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAE---------------------- 67 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHH----------------------
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHH----------------------
Confidence 3457888888899999999999999999999999999999999987766666653211
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc-cchh--hhhhhHHHHH
Q psy15414 292 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGES--FYQKHMEQLV 368 (1458)
Q Consensus 292 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~-~gEs--~y~~~~~~vv 368 (1458)
.|.+ .|.+ |+.+|+.+.+.|.+.+++|||.+|. ..++ .|.+.+.+++
T Consensus 68 -------------------~a~~------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~ 117 (524)
T 2x1l_A 68 -------------------TAAK------EGIP-----AAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIW 117 (524)
T ss_dssp -------------------HHHH------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred -------------------HHHH------cCCC-----HHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHHHH
Confidence 0100 1211 3567888899999999999999983 2333 4788899999
Q ss_pred HHHHHCCCeeecCCCeE
Q psy15414 369 PYLEKKGLLELDDGRKI 385 (1458)
Q Consensus 369 ~~L~~kg~~~~~dGa~~ 385 (1458)
+.|.++|++|+.+|..+
T Consensus 118 ~~L~~~G~iY~~~~~v~ 134 (524)
T 2x1l_A 118 KRMADAGDIYLDAYKGW 134 (524)
T ss_dssp HHHHHTTCEEEEEEEEE
T ss_pred HHHHHCCCEEeeeeeee
Confidence 99999999999888754
No 50
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.41 E-value=5.8e-12 Score=153.74 Aligned_cols=134 Identities=15% Similarity=0.057 Sum_probs=104.6
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHc-----CCCCCCcceEEEEEeEEEec
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKA-----GILNPNKTRMDFVGFGVVLG 859 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~al-----G~~~~~~~~~~H~~fg~V~~ 859 (1458)
++||.|+||.|||. +|...+... .+++++| +|.||..+.+++..+.+++ |+.. +.+.|+++ +++
T Consensus 184 D~Vi~R~Dg~ptY~---lA~vVDD~~-mgithvi--RG~D~~~~t~~q~~l~~aL~~~g~g~~~---P~~~h~pl--il~ 252 (498)
T 2ja2_A 184 DFALTRASGDPLYT---LVNPCDDAL-MKITHVL--RGEDLLPSTPRQLALHQALIRIGVAERI---PKFAHLPT--VLG 252 (498)
T ss_dssp CCBSBCTTSCBCHH---HHHHHHHHH-TTCCEEE--EEGGGGGGHHHHHHHHHHHHHTTSCCCC---CEEEEECC--EEC
T ss_pred cceeEccCCCcchh---hHHHHHhhh-cCCCEEE--EChhhhhccHHHHHHHHHHHhhcCCCCC---CeEEEeee--eEC
Confidence 57899999999998 677777763 6899996 9999999999999999999 9843 47789888 677
Q ss_pred CCCcccccccCCccchHHHHHHH--HHHHHHHHhhcCCC-----CCCChhhhHHHHHhhhhhheeeeeecCCCCCccccc
Q psy15414 860 EDRKKFKTRSGDTVKLSELLDEG--LRRSLDKLKDKNRH-----TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFS 932 (1458)
Q Consensus 860 ~~G~KMSKR~GnvI~l~DLLde~--~~~a~~~~~~~~~~-----~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd 932 (1458)
.+|+|||||.|+ ++++++.+.. .+...+.+...|-. ...+.++ .+.+|++...+.++..||
T Consensus 253 ~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~s~~e-----------li~~f~~~~~~~~~a~fd 320 (498)
T 2ja2_A 253 EGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDE-----------MVAAFDVADVNSSPARFD 320 (498)
T ss_dssp SSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCCCHHH-----------HHHHCCGGGCCCSCEECC
T ss_pred CCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHhCCCCCcccccCCHHH-----------HHhhCChhhcCccccccC
Confidence 899999999998 5899998863 23345556555532 1223222 266788888888999999
Q ss_pred hhhHHhhhc
Q psy15414 933 FDKMLDDRG 941 (1458)
Q Consensus 933 ~d~~l~~n~ 941 (1458)
++++..+|+
T Consensus 321 ~~kL~~~N~ 329 (498)
T 2ja2_A 321 QKKADALNA 329 (498)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 999988874
No 51
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.40 E-value=9.2e-11 Score=144.88 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=105.7
Q ss_pred CcEEEcCCCCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcc
Q psy15414 785 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 864 (1458)
Q Consensus 785 ~~vL~ksDGt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~K 864 (1458)
++|+.|+||.|||. +|...+... .+.+++| .|.||....++...+.++|||.. +.+.|++. |++.+|+|
T Consensus 205 D~vi~r~dg~PtY~---fA~vVDD~~-mgITHVi--RG~D~l~sTp~q~~l~~alg~~~---P~y~H~pl--i~~~~g~k 273 (512)
T 4gri_A 205 DPVILKSDGLPTYH---LANVVDDYL-MKITHVL--RAQEWVSSGPLHVLLYKAFKWKP---PIYCHLPM--VMGNDGQK 273 (512)
T ss_dssp SCEEECTTSCBCHH---HHHHHHHHH-TTCSEEE--EEGGGGGGHHHHHHHHHHHTCCC---CEEEEECC--CBCTTSSB
T ss_pred ceEEEecCCccccc---ccceecccc-cCCceec--cccccccccHHHHHHHHHcCCCC---CeEEecch--hccccccc
Confidence 47999999999995 777777763 6899998 99999999999999999999954 46889998 78889999
Q ss_pred cccccCCccchHHHHHHHH--HHHHHHHhhcCCC-----CCCChhhhHHHHHhhhhhheeeeeecCCCCCccccchhhHH
Q psy15414 865 FKTRSGDTVKLSELLDEGL--RRSLDKLKDKNRH-----TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 937 (1458)
Q Consensus 865 MSKR~GnvI~l~DLLde~~--~~a~~~~~~~~~~-----~~~~~ee~~~~ad~v~~~alRy~lLs~~~~~d~~Fd~d~~l 937 (1458)
+|||.|. .++.++.+++. +...+.+...|.. +.++.+| .+.+|++.....++..||++++.
T Consensus 274 LSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~e-----------li~~Fdl~~v~ks~a~fD~~KL~ 341 (512)
T 4gri_A 274 LSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKND-----------LEQFFSIEKINKSPAIFDYHKLD 341 (512)
T ss_dssp CCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHH-----------HHHHCCGGGBCSSCCBCCHHHHH
T ss_pred cCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHH-----------HHHHHHhcCCCCCCccccHHHHH
Confidence 9999994 67889888743 3456666554422 2334333 25678888888899999999999
Q ss_pred hhhc
Q psy15414 938 DDRG 941 (1458)
Q Consensus 938 ~~n~ 941 (1458)
.+|+
T Consensus 342 ~~N~ 345 (512)
T 4gri_A 342 FFNS 345 (512)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 52
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.39 E-value=4e-13 Score=163.96 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhccccCe---------eEeccccchhHHHHHHHHHHHHHCCCeec-----------------------
Q psy15414 1349 MICDVSRRDFQKIYDRLNV---------TLTERGESFYQKHMEQLVPYLEKKGLLEL----------------------- 1396 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~---------~f~esges~~~~~v~~~~~~L~~~G~~Ye----------------------- 1396 (1458)
.+.+.|.+||+|+|+.||. .+.|| .+. +.|.+++++|.++|++|+
T Consensus 75 ~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QS--er~-~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~ 151 (488)
T 3afh_A 75 EYEQQILESLRWCGLDWDEGPDIGGDFGPYRQS--ERL-EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYK 151 (488)
T ss_dssp HHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGG--GCH-HHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeee--CCH-HHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHH
Confidence 4668999999999999998 37777 654 689999999999999997
Q ss_pred cCCC---cc--------cc------------cccCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEeeccccc
Q psy15414 1397 DDGR---KI--------MW------------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRSY 1453 (1458)
Q Consensus 1397 ~~ga---~~--------~~------------gddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~~dhhg~ 1453 (1458)
++|. ++ .| ++.+|. ||+|+||.|||..+.+ .+... +|+++||+|.||+++
T Consensus 152 ~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~---Vl~R~DG~PtY~lA~v---VDD~~-mgIThViRG~D~l~~ 224 (488)
T 3afh_A 152 EKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDF---IIMKSNGFPTYNFAVV---VDDHL-MRISHVFRGEDHLSN 224 (488)
T ss_dssp HTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCE---EEECTTSCBCHHHHHH---HHHHH-TTCSEEEEEGGGGGG
T ss_pred hcCCCceEEEECCCCceeEEeccceeEeecCCCCCCe---EEEecCCCeehhhHHH---HHHHh-cCCCEEEEchhhhhC
Confidence 3463 21 22 566887 9999999999986644 45564 799999999999998
Q ss_pred ccc
Q psy15414 1454 HQV 1456 (1458)
Q Consensus 1454 ~~~ 1456 (1458)
.++
T Consensus 225 tp~ 227 (488)
T 3afh_A 225 TPK 227 (488)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 53
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.27 E-value=1.2e-11 Score=151.10 Aligned_cols=225 Identities=14% Similarity=0.072 Sum_probs=143.3
Q ss_pred ceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHHHHHHhhcCCCCCCCCChhHHHH
Q psy15414 604 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 683 (1458)
Q Consensus 604 ~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~~~~~~~~~~~~~~~~~i~~l~~ 683 (1458)
++|..= -.|+|||+|||||+|++++ |.+.+.+|.+..+-.|+|.-.. .
T Consensus 95 g~v~tR-FaPsPtG~LHIGhaRtal~-----n~l~Ar~~~G~~iLRieDtD~~--------------R------------ 142 (553)
T 3aii_A 95 GEVVLR-FAPNPSGPLHIGHARAAIL-----NHEYARKYDGRLILRIEDTDPR--------------R------------ 142 (553)
T ss_dssp SCCEEE-ECCCSSSSCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCCGG--------------G------------
T ss_pred CceEEE-eCCCCCCCccHHHHHHHHH-----HHHHHHHcCCEEEEEECcCCcc--------------c------------
Confidence 445444 4689999999999999988 5555668899999999996310 0
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCEEec-ccccccchhHHHHHHHHH
Q psy15414 684 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLE 762 (1458)
Q Consensus 684 iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~f~~-~geS~~~~~v~~vi~~L~ 762 (1458)
+ .++ +.+.+.++++.||+..+. ...|.|.+...+++++|+
T Consensus 143 ----------~------------------~~e-----------~~~~I~edL~wLGl~wd~~~~qSdr~~~y~~~~~~Li 183 (553)
T 3aii_A 143 ----------V------------------DPE-----------AYDMIPADLEWLGVEWDETVIQSDRMETYYEYTEKLI 183 (553)
T ss_dssp ----------C------------------CTT-----------HHHHHHHHHHHHTCCCSEEEEGGGGHHHHHHHHHHHH
T ss_pred ----------c------------------cHH-----------HHHHHHHHHHHcCCCCCCCcccccCHHHHHHHHHHHH
Confidence 0 000 234567778888885432 225778888899999999
Q ss_pred HcCCeEeeC------------C--------------------------cEEEEc--CC-CCC---CCcEEEcC-------
Q psy15414 763 KKGLLELDD------------G--------------------------RKIMWG--ED-RGS---IPMTIVKS------- 791 (1458)
Q Consensus 763 ~kG~~ye~d------------G--------------------------a~~~~~--d~-~d~---~~~vL~ks------- 791 (1458)
++|++|... | ..++.. +- ... .++|++|.
T Consensus 184 ~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~ 263 (553)
T 3aii_A 184 ERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPR 263 (553)
T ss_dssp HTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTT
T ss_pred HcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCCc
Confidence 999999421 1 011111 10 000 24677775
Q ss_pred --C---CCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccc
Q psy15414 792 --D---GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 866 (1458)
Q Consensus 792 --D---Gt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMS 866 (1458)
| |.|+| |+|...+.. ..|.+++| -|.||..+-+....+.+++|+.. ..+.|+++ + +.+|+|||
T Consensus 264 ~Gd~~~g~PtY---hfa~~vDD~-~~GIThvi--RG~D~~~nt~~Q~~l~~alG~~~---P~y~H~~~--L-~~~g~KLS 331 (553)
T 3aii_A 264 TGTRYRVYPMM---NFSVAVDDH-LLGVTHVL--RGKDHLANREKQEYLYRHLGWEP---PEFIHYGR--L-KMDDVALS 331 (553)
T ss_dssp TBTSCCEEECH---HHHHHHHHH-HTTCCEEE--C-----CHHHHHHHHHHHHTCCC---CEEECCCC--B-C-------
T ss_pred cCCCceeeeee---eeeeeeeec-cCCCceEe--ccHhhhhCHHHHHHHHHHcCCCC---CeEEEeeE--E-ecCCceec
Confidence 2 23444 466666654 36888887 89999999998888889999843 34558887 4 34889999
Q ss_pred cccCC---------------ccchHHHHHHHHHHHHHHHhhcCCCCCCChhhhHHHHHhhhhhheeeeeecCCC-CCccc
Q psy15414 867 TRSGD---------------TVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYV 930 (1458)
Q Consensus 867 KR~Gn---------------vI~l~DLLde~~~~a~~~~~~~~~~~~~~~ee~~~~ad~v~~~alRy~lLs~~~-~~d~~ 930 (1458)
||+|| +.++.+|.... ++| .+||+|+++... .++.+
T Consensus 332 KR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG----------------~~P------------eaIr~fl~~~G~s~~~~~ 383 (553)
T 3aii_A 332 TSGAREGILRGEYSGWDDPRLGTLRAIARRG----------------IRP------------EAIRKLMVEIGVKIADST 383 (553)
T ss_dssp CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTT----------------CCH------------HHHHHHHHHHTTCSSCBC
T ss_pred hhhhhhhccccccccccCcchHHHHHHHHcC----------------CCH------------HHHHHHHHhcCCCCcccc
Confidence 99997 66777776642 233 258888888877 68999
Q ss_pred cchhhHHhh
Q psy15414 931 FSFDKMLDD 939 (1458)
Q Consensus 931 Fd~d~~l~~ 939 (1458)
|||+.+.+.
T Consensus 384 ~s~~~L~~~ 392 (553)
T 3aii_A 384 MSWKKIYGL 392 (553)
T ss_dssp CCHHHHHHH
T ss_pred ccHHHHHHH
Confidence 999987755
No 54
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.22 E-value=8e-12 Score=155.54 Aligned_cols=155 Identities=13% Similarity=0.139 Sum_probs=109.5
Q ss_pred ccchHHHHHHHHHcCCCCCCCCCCceEEEeecC---CCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcc--
Q psy15414 1207 RVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSS---PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG-- 1281 (1458)
Q Consensus 1207 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~ve~vs---anptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag-- 1281 (1458)
..|...++.+|++++.+ ++ |||+ +||||++||||+|.++++|+++|.|++.||+|...++++|.|
T Consensus 2 ~~W~~~~a~~~~~~~~~------~~----~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~ 71 (523)
T 1irx_A 2 VHWADYIADKIIRERGE------KE----KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRF 71 (523)
T ss_dssp -CHHHHHHHHHHHHSCC------CS----EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBC
T ss_pred CchHHHHHHHHHHhcCC------CC----eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchh
Confidence 35788888999887443 11 6888 899999999999999999999999999999999999999999
Q ss_pred cHH-HHHHHHhchhcCcCCCCCccHHHHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHH
Q psy15414 1282 TQF-GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 1360 (1458)
Q Consensus 1282 ~Q~-~~l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~ 1360 (1458)
++| ..+..+.+. |-|.+.. + .++. + + +.+.-.+.+.+.|+++|+|
T Consensus 72 rkip~~~~~a~~~------~~G~~~~-------~----~p~p--~---~------------~~~~~~~~~~~~~~~~l~~ 117 (523)
T 1irx_A 72 RKVPRNVPQEWKD------YLGMPIS-------E----VPDP--W---G------------CHESYAEHFMRKFEEEVEK 117 (523)
T ss_dssp CCCCSSSCGGGGG------GTTSBGG-------G----SCCT--T---S------------SSSSHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHH------HcCCCcc-------c----CCcc--h---h------------hHHHHHHHHHHHHHHHHHH
Confidence 655 222112111 1111110 0 0000 0 0 0111224577899999999
Q ss_pred hccccCeeEeccccchhHH-HHHHHHHHHHHCC----------------CeeccCCCcc---cccccCCC
Q psy15414 1361 IYDRLNVTLTERGESFYQK-HMEQLVPYLEKKG----------------LLELDDGRKI---MWGEDRGS 1410 (1458)
Q Consensus 1361 ~gv~~d~~f~esges~~~~-~v~~~~~~L~~~G----------------~~Ye~~ga~~---~~gddkdr 1410 (1458)
||+.||.+ +++ ..|.+ .|.+++++|.++| +.|+.+ .. .|++..+|
T Consensus 118 Lgi~~D~~-~~s--e~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~--~~~~~~~~~~~~~ 182 (523)
T 1irx_A 118 LGIEVDLL-YAS--ELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPEN--WWPAMVYCPEHRR 182 (523)
T ss_dssp TTCCCEEE-EHH--HHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTT--CCSEEEECTTTCC
T ss_pred cCCCceEE-ech--hhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCC--ceeccccchhhCC
Confidence 99999987 888 64556 8999999999999 777753 22 46666665
No 55
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.18 E-value=4.6e-11 Score=146.14 Aligned_cols=212 Identities=15% Similarity=0.078 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHHH
Q psy15414 582 YAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLI 661 (1458)
Q Consensus 582 ~~~~~l~~i~~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l~ 661 (1458)
|+...+..-+..|.. ++|. -=..|+|||+|||||+|++++-..++ .+|.+..+-.|.|.-.
T Consensus 10 fi~~~i~~dl~~~~~-------~~v~-tRFaPSPtG~LHIGhaRtal~n~l~A-----r~~gG~fiLRieDTD~------ 70 (553)
T 1qtq_A 10 FIRQIIDEDLASGKH-------TTVH-TRFPPEPNGYLHIGHAKSICLNFGIA-----QDYKGQCNLRFDDTNP------ 70 (553)
T ss_dssp HHHHHHHHHHHHTSC-------SSCE-EEECCCTTSCCBHHHHHHHHHHHHHH-----HHTTCEEEEEECCCCG------
T ss_pred HHHHHHHhHhhcCCc-------CceE-EEeCCCCCCCccHHHHHHHHHHHHHH-----HHcCCEEEEEECCCCc------
Confidence 555666554444321 1233 34579999999999999998855444 4788888888998621
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCE
Q psy15414 662 AHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 741 (1458)
Q Consensus 662 ~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i~ 741 (1458)
.. . +.-+.+.+.+.++.||+.
T Consensus 71 --------~R----------------------~-----------------------------~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 71 --------VK----------------------E-----------------------------DIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp --------GG----------------------C-----------------------------CHHHHHHHHHHHHHTTCC
T ss_pred --------hh----------------------c-----------------------------CHHHHHHHHHHHHHcCCC
Confidence 00 0 011344567778888885
Q ss_pred Eec--ccccccchhHHHHHHHHHHcCCeEeeC----------------Cc----------------------------EE
Q psy15414 742 LTE--RGESFYQKHMEQLVPYLEKKGLLELDD----------------GR----------------------------KI 775 (1458)
Q Consensus 742 f~~--~geS~~~~~v~~vi~~L~~kG~~ye~d----------------Ga----------------------------~~ 775 (1458)
.+. ...|.|.+.+.+.+++|+++|++|... |. .+
T Consensus 92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~ 171 (553)
T 1qtq_A 92 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC 171 (553)
T ss_dssp CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceE
Confidence 531 225677777778888999999998421 11 11
Q ss_pred EE--cCCCC-C---CCcEEEc---------CC---CCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHH
Q psy15414 776 MW--GEDRG-S---IPMTIVK---------SD---GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAK 837 (1458)
Q Consensus 776 ~~--~d~~d-~---~~~vL~k---------sD---Gt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il~ 837 (1458)
+. ++-.. . .++||+| +| |.|||. +|...+.. ..|.+++| .|.+|..+-+....+++
T Consensus 172 lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~---la~vvDDh-~~GITHvi--Rg~e~~~n~~~q~~l~~ 245 (553)
T 1qtq_A 172 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYD---FTHCISDA-LEGITHSL--CTLEFQDNRRLYDWVLD 245 (553)
T ss_dssp EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HTTCSEEE--EEGGGTTTHHHHHHHHH
T ss_pred EEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccc---cccEEEec-cCCcceEe--eccchhhhHHHHHHHHH
Confidence 11 00000 0 2467888 55 356665 66666655 36888887 89999999998888889
Q ss_pred HcCCCCCCcceEEEEEeEEEecCCCcccccccCC---------------ccchHHHHHHH
Q psy15414 838 KAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD---------------TVKLSELLDEG 882 (1458)
Q Consensus 838 alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gn---------------vI~l~DLLde~ 882 (1458)
++|+.. ....| |.++ + +.+|+|||||+|+ +.++.++.++.
T Consensus 246 alg~~~-~P~~~-~f~h--L-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rG 300 (553)
T 1qtq_A 246 NITIPV-HPRQY-EFSR--L-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 300 (553)
T ss_dssp TSCCSC-CCEEE-EECC--C-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHT
T ss_pred HcCCCC-CCCeE-EEEe--e-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCC
Confidence 999841 12334 5555 3 4588999999986 67888887763
No 56
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.17 E-value=3.1e-10 Score=138.20 Aligned_cols=236 Identities=20% Similarity=0.180 Sum_probs=140.3
Q ss_pred EEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHHHH
Q psy15414 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 294 (1458)
Q Consensus 215 ~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~~~ 294 (1458)
+|-+=.+.|+|.+++||||+|+.|+.|+|+|.++..||+|.-+..+.|+|+|.|.- +.. +.+|.
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~-----Deh------ddKI~----- 105 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL-----DDG------EDKVA----- 105 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC-----CCC------CcHHH-----
Confidence 34555588999999999999999999999999999999999999999999997741 000 11111
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceecc--cchhhhhhhHHHHHHHHH
Q psy15414 295 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLE 372 (1458)
Q Consensus 295 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~--~gEs~y~~~~~~vv~~L~ 372 (1458)
++|.+ .|- -|+.+++...+.|.+.+++|||.++. ...+.|.+.+.++++.|.
T Consensus 106 ---------------~~A~~------~g~-----~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~ 159 (501)
T 3sp1_A 106 ---------------KTARE------KGL-----TVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILE 159 (501)
T ss_dssp ----------------------------C-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHH
T ss_pred ---------------HHHHH------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHH
Confidence 11111 111 25788888999999999999998874 235667788999999999
Q ss_pred HCCCeeecCCCeEEecCC----------------------------CCCCceEEEec-----CCccccchh---------
Q psy15414 373 KKGLLELDDGRKIMWGED----------------------------RGSIPMTIVKS-----DGGFTYDTS--------- 410 (1458)
Q Consensus 373 ~kg~~~~~dGa~~~~~~~----------------------------~~~~~~vl~kS-----DG~~tY~t~--------- 410 (1458)
++|++|+.+|.++..... +++.+.++-|. .|.+.+.+.
T Consensus 160 ~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWh 239 (501)
T 3sp1_A 160 EKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWH 239 (501)
T ss_dssp HTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHH
T ss_pred HCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCch
Confidence 999999999876521110 01123455444 344433322
Q ss_pred -hHHHHHHHhhhcCCCEEEEecCCchHHHHHHHH-HHHHHHcCCCCCCCccccccc----cccCCCcccccCHHHHHHH-
Q psy15414 411 -DLAAIRQRIEEEKADWIVYVTDHRSYHQVLQAI-AEEEKKQGISSSSSSQTKGTA----KKMNVPVRDRMSVRDYLSD- 483 (1458)
Q Consensus 411 -DiA~~~~r~~~~~~d~iIyv~D~~~~~~~~~a~-~~a~~~~g~~~~~~~~~~G~~----~kmskr~gt~~~l~~~L~e- 483 (1458)
.-.+...++--..+|.-.=+.|..-.|+-...+ ..++ -|-++...-+++|.+ .||||..||++++.+.+++
T Consensus 240 iEcsam~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~--~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~g 317 (501)
T 3sp1_A 240 LECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECF--LNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQN 317 (501)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHH--HTSCCCSEEEEECCEECC----------CCCHHHHHHTT
T ss_pred HHHHHHHHHHcCCCceEEeeccccccchHHHHHHHHHHc--cCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcC
Confidence 112222232112456555567875443322222 1121 243333223344443 3999999999999999988
Q ss_pred HHhhhhhhccc
Q psy15414 484 VFTHAVQVAFP 494 (1458)
Q Consensus 484 ll~dAi~~a~~ 494 (1458)
...+++|..+.
T Consensus 318 yg~d~lR~~ll 328 (501)
T 3sp1_A 318 FSPLDFRYLCL 328 (501)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88889998754
No 57
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.11 E-value=1.3e-10 Score=141.93 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhccccCe---------eEeccccchhHHHHHHHHHHHHHCCCeec-----------c-----------
Q psy15414 1349 MICDVSRRDFQKIYDRLNV---------TLTERGESFYQKHMEQLVPYLEKKGLLEL-----------D----------- 1397 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~---------~f~esges~~~~~v~~~~~~L~~~G~~Ye-----------~----------- 1397 (1458)
.+.+.|.+||+|+|+.||. .+.|| .+. +.|.+++++|.++|++|. +
T Consensus 56 ~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~QS--~r~-~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y 132 (498)
T 2ja2_A 56 ESYLALLDALRWLGLDWDEGPEVGGPYGPYRQS--QRA-EIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGY 132 (498)
T ss_dssp HHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGG--GCH-HHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCC
T ss_pred HHHHHHHHHHHHcCCCcCCCcCcCCCCCCeeee--cCH-HHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCC
Confidence 3567999999999999997 78888 664 689999999999999994 0
Q ss_pred C-----------------CCc--c---------cc------------cccCCCCCceEEecCCccccchhhhHHHHhhhh
Q psy15414 1398 D-----------------GRK--I---------MW------------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIE 1437 (1458)
Q Consensus 1398 ~-----------------ga~--~---------~~------------gddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~ 1437 (1458)
+ |.. | .| ..-.|. ||+|+||.|||..+ ...+...
T Consensus 133 ~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~D~---Vi~R~Dg~ptY~lA---~vVDD~~ 206 (498)
T 2ja2_A 133 DNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDF---ALTRASGDPLYTLV---NPCDDAL 206 (498)
T ss_dssp CCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTCSCCC---BSBCTTSCBCHHHH---HHHHHHH
T ss_pred CCccccCCHHHHHhhhccCCCceEEEECCCCceEEEecccceEeecccccCcc---eeEccCCCcchhhH---HHHHhhh
Confidence 1 210 1 01 112455 99999999999754 5577775
Q ss_pred hcCCCEEEEeecccccccc
Q psy15414 1438 EEKADWIVYVTDHRSYHQV 1456 (1458)
Q Consensus 1438 ~rgfd~~i~~~dhhg~~~~ 1456 (1458)
+|+++||+|.||+++.++
T Consensus 207 -mgithviRG~D~~~~t~~ 224 (498)
T 2ja2_A 207 -MKITHVLRGEDLLPSTPR 224 (498)
T ss_dssp -TTCCEEEEEGGGGGGHHH
T ss_pred -cCCCEEEEChhhhhccHH
Confidence 899999999999999875
No 58
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.10 E-value=2e-10 Score=139.53 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhccccCe-eEeccccchhHHHHHHHHHHHHHCCCeec----------------c-------CC-----
Q psy15414 1349 MICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYLEKKGLLEL----------------D-------DG----- 1399 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~-~f~esges~~~~~v~~~~~~L~~~G~~Ye----------------~-------~g----- 1399 (1458)
.+.+.|.+||+|+|+.||. .+.|| .++ +.|.+++++|.++|++|. . +|
T Consensus 75 ~~~~~i~~dl~wlGl~~d~~~~~qS--~r~-~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~ 151 (490)
T 4g6z_A 75 EAVDAILEGMAWLGLDYDEGPYYQM--QRM-DRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPE 151 (490)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEEGG--GCH-HHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCC
T ss_pred HHHHHHHHHHHHcCCCCCCCCcccc--cCH-HHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccC
Confidence 4668999999999999997 58888 654 679999999999999994 0 01
Q ss_pred -----------C--cc----------cc------------cccCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEE
Q psy15414 1400 -----------R--KI----------MW------------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 1444 (1458)
Q Consensus 1400 -----------a--~~----------~~------------gddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~ 1444 (1458)
. .| .| ++-.|. ||+|+||.|||.. |...+... +|.++|
T Consensus 152 ~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~---Vl~R~DG~ptY~l---A~vVDD~~-mgIThV 224 (490)
T 4g6z_A 152 PGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISNEELDDL---VVARPDGTPMYNF---CVVVDDLD-MGITHV 224 (490)
T ss_dssp TTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEEEEEGGGCCCC---EEECTTSCBCHHH---HHHHHHHH-TTCCEE
T ss_pred ChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeeeeeccccCCCe---EEEeeCCCccchh---HHHHHHHh-cCCCEE
Confidence 0 01 01 122565 9999999999964 68889996 899999
Q ss_pred EEeecccccccc
Q psy15414 1445 VYVTDHRSYHQV 1456 (1458)
Q Consensus 1445 i~~~dhhg~~~~ 1456 (1458)
|.|.||+...++
T Consensus 225 iRG~D~l~~tpr 236 (490)
T 4g6z_A 225 IRGDDHVNNTPR 236 (490)
T ss_dssp EEEGGGGGGHHH
T ss_pred EeccccccChHH
Confidence 999999987654
No 59
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.09 E-value=2.9e-10 Score=144.55 Aligned_cols=212 Identities=12% Similarity=-0.015 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchhHHHHH
Q psy15414 581 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 660 (1458)
Q Consensus 581 ~~~~~~l~~i~~~g~~~~~~~~~~kV~VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~Qi~~l 660 (1458)
.|+.+.+..-+..|.. ++|. -=..|+|||+|||||+|++++ |++.+.+|.+..+-.|+|.-.
T Consensus 49 ~fi~~ii~~dl~~g~~-------~~v~-tRFaPSPtG~LHIGhARtAL~-----n~l~Ar~~gG~fiLRIEDTD~----- 110 (851)
T 2hz7_A 49 NFITEIIERDLEAGKY-------PRVV-TRFPPDPSGYAHLGHVFASLL-----DFNTARQYGGQFNLRMDDTNP----- 110 (851)
T ss_dssp CHHHHHHHHHHHTTSC-------SSCE-EEECCCSSSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCCT-----
T ss_pred HHHHHHHHHHhhcCCc-------CceE-EEeCCCCCCCccHHHHHHHHH-----HHHHHHHcCCEEEEEECcCCc-----
Confidence 3566666555444321 1233 334899999999999999988 455555788899999999621
Q ss_pred HHHHHhhcCCCCCCCCChhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy15414 661 IAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV 740 (1458)
Q Consensus 661 ~~~~~~~~~~~~~~~~~i~~l~~iy~~~~~~~~~~~~~~~~a~~~~~~le~gd~e~~~lw~~~~~~s~~~f~~~y~~L~i 740 (1458)
.. +. .-+.+.+.++++.||+
T Consensus 111 ---------~R----------------------~~-----------------------------~e~~~~IledL~wLGl 130 (851)
T 2hz7_A 111 ---------EL----------------------AR-----------------------------QEYVDSIADDLKWLGL 130 (851)
T ss_dssp ---------TT----------------------CC-----------------------------HHHHHHHHHHHHHHTC
T ss_pred ---------cc----------------------cc-----------------------------HHHHHHHHHHHHHcCC
Confidence 00 00 0134466777888998
Q ss_pred EEe--cccccccchhHHHHHHHHHHcCCeEeeC----------------CcE----------------------------
Q psy15414 741 TLT--ERGESFYQKHMEQLVPYLEKKGLLELDD----------------GRK---------------------------- 774 (1458)
Q Consensus 741 ~f~--~~geS~~~~~v~~vi~~L~~kG~~ye~d----------------Ga~---------------------------- 774 (1458)
..+ +...|.|.+...+++++|+++|++|... |..
T Consensus 131 ~wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~ 210 (851)
T 2hz7_A 131 DWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEH 210 (851)
T ss_dssp CCTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSC
T ss_pred CCCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCe
Confidence 542 1225778888889999999999999431 110
Q ss_pred EEE--cCCCC-C---CCcEEEcCC------------CCccCCCcchHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHH
Q psy15414 775 IMW--GEDRG-S---IPMTIVKSD------------GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECA 836 (1458)
Q Consensus 775 ~~~--~d~~d-~---~~~vL~ksD------------Gt~tY~trDiA~~~~k~~~~~~d~iIyVvg~dq~~hf~~l~~il 836 (1458)
++. ++-.. . .++||+|++ |.||| ++|...+.. ..+.+++| -|.+|..+-+....++
T Consensus 211 vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtY---hfA~vVDD~-~~GITHVi--RG~D~~~n~~~q~~l~ 284 (851)
T 2hz7_A 211 VLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAY---DFEHPLQDA-IEGVTHSM--CSLEFVDNRAIYDWLM 284 (851)
T ss_dssp EEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECH---HHHHHHHHH-HHTCSEEE--EEGGGTTTHHHHHHHH
T ss_pred eEEEeccccccCCCCCCcEEEEecCCCCCccCCCCcccccc---ceeeEeeec-cCCcceee--cchhhhhChHHHHHHH
Confidence 111 00000 0 246788876 23333 456656654 35889887 9999999999888889
Q ss_pred HHcCCCCCCcceEEEEEeEEEecCCCcccccccCC---------------ccchHHHHHH
Q psy15414 837 KKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD---------------TVKLSELLDE 881 (1458)
Q Consensus 837 ~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gn---------------vI~l~DLLde 881 (1458)
+++|+.. ....| |.++ +. .+|+|||||+|+ +.++.+|.+.
T Consensus 285 ~alG~~~-~P~~~-~fah--Ln-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~r 339 (851)
T 2hz7_A 285 EKLNFDP-RPHQY-EFGR--RG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRL 339 (851)
T ss_dssp HHTTCSS-CCEEE-EECC--EE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHH
T ss_pred HHcCCCC-CCCce-EEEE--ec-CCCccccccccccccccCcccCCCCcchhHHHHHHHc
Confidence 9999842 11233 4444 33 378999999986 5678888776
No 60
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.08 E-value=1.6e-10 Score=151.23 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=106.2
Q ss_pred CcEEEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHH
Q psy15414 213 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 292 (1458)
Q Consensus 213 ~~~V~VEfsSpN~akplHvGHlRstiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~ 292 (1458)
+++++|++.+|||+|+|||||+||.+|||+|+|.++..||+|......+++|+++...+..+.. .+ . ..+
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~--~~----~---~~~- 102 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--RD----P---KTI- 102 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHT--TC----H---HHH-
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcc--cC----c---hHH-
Confidence 4689999999999999999999999999999999999999999999999999999887765431 10 0 011
Q ss_pred HHHHHhhhhcCCC-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceeccc-----ch--hhhhhhH
Q psy15414 293 AFYKESKKRFDED-EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GE--SFYQKHM 364 (1458)
Q Consensus 293 ~~y~~~~~~~~~~-~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~~-----gE--s~y~~~~ 364 (1458)
+.+. +.+.-. .++. .+ ...| .+++...+.+++.+++||+++|+. .+ ..|...+
T Consensus 103 ~~~~---~~~g~~~~~~~-----------~~----~~~~-~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v 163 (810)
T 1wkb_A 103 WIYR---DVYKVPEEILW-----------TF----EDPI-NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFI 163 (810)
T ss_dssp HHHH---HTSCCCHHHHH-----------GG----GSHH-HHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHH
T ss_pred HHHH---HHhCCCHHHHH-----------HH----HHHH-HHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHH
Confidence 1111 111111 1110 00 1123 446778888999999999999952 45 6788889
Q ss_pred HHHHHHHHHCCCeeecCCCe
Q psy15414 365 EQLVPYLEKKGLLELDDGRK 384 (1458)
Q Consensus 365 ~~vv~~L~~kg~~~~~dGa~ 384 (1458)
..++..|.++|++++.+...
T Consensus 164 ~~~f~~L~~~Gliy~~~~~v 183 (810)
T 1wkb_A 164 EWQFWKLKEKGYIVKGAHRV 183 (810)
T ss_dssp HHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCEEECCeee
Confidence 99999999999999876543
No 61
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.06 E-value=1.9e-10 Score=140.01 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhccccCee---------EeccccchhHHHHHHHHHHHHHCCCeecc-----------------C-----
Q psy15414 1350 ICDVSRRDFQKIYDRLNVT---------LTERGESFYQKHMEQLVPYLEKKGLLELD-----------------D----- 1398 (1458)
Q Consensus 1350 ~~~~i~~dL~~~gv~~d~~---------f~esges~~~~~v~~~~~~L~~~G~~Ye~-----------------~----- 1398 (1458)
+.+.|.+||+|+|+.||.. +.|| .+. +.|.+++++|.++|++|.- +
T Consensus 52 ~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS--~r~-~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~ 128 (468)
T 1j09_A 52 AEERILAALKWLGLSYDEGPDVGGPHGPYRQS--ERL-PLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARN 128 (468)
T ss_dssp HHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGG--GCH-HHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGG
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCeecc--CCH-HHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccC
Confidence 5579999999999999975 8888 664 6899999999999999941 1
Q ss_pred ------------CC--cc----------cc------------cccCCCCCceEEecCCccccchhhhHHHHhhhhhcCCC
Q psy15414 1399 ------------GR--KI----------MW------------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 1442 (1458)
Q Consensus 1399 ------------ga--~~----------~~------------gddkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd 1442 (1458)
|. .| .| .+-.|. ||.|+||.|||..+.+ .+... .|++
T Consensus 129 l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~---Vl~R~dg~PtY~~a~v---vDD~~-~git 201 (468)
T 1j09_A 129 IPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDV---VLLKSDGYPTYHLANV---VDDHL-MGVT 201 (468)
T ss_dssp SCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCC---EEECTTSCBCHHHHHH---HHHHH-TTCC
T ss_pred CCHHHHHHHHhcCCCceEEEecCCCCceEEEeccceeEeecccCCCCe---EEEecCCCeeehhHHH---HHHHH-CCCC
Confidence 22 01 11 122566 9999999999976644 45564 7999
Q ss_pred EEEEeecccccccc
Q psy15414 1443 WIVYVTDHRSYHQV 1456 (1458)
Q Consensus 1443 ~~i~~~dhhg~~~~ 1456 (1458)
+||+|.|||++.++
T Consensus 202 hvirG~D~~~~t~~ 215 (468)
T 1j09_A 202 DVIRAEEWLVSTPI 215 (468)
T ss_dssp EEEEEGGGGGGHHH
T ss_pred eEEEChhhhhhHHH
Confidence 99999999999875
No 62
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.94 E-value=4.4e-09 Score=136.81 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=98.8
Q ss_pred CCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHH
Q psy15414 1229 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 1308 (1458)
Q Consensus 1229 ~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~ 1308 (1458)
.+++..|=-.-+||||+|||||+|+.+++|+++|.++++||+|...++.+|+|.+|++.|....
T Consensus 51 ~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g---------------- 114 (880)
T 4arc_A 51 SKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNN---------------- 114 (880)
T ss_dssp TSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTT----------------
T ss_pred CCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcC----------------
Confidence 3456555455689999999999999999999999999999999999999999999988764321
Q ss_pred HHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEeccccchhHHHHHHHHH
Q psy15414 1309 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGESFYQKHMEQLVP 1386 (1458)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esges~~~~~v~~~~~ 1386 (1458)
. +..+. .....+.++++|+.+|+.+| +++.... ..|...+..++.
T Consensus 115 --------~--~p~~~----------------------~~~~i~~~~~~l~~LGis~Dw~~~~~T~d-~~~~~~v~~~f~ 161 (880)
T 4arc_A 115 --------T--APAPW----------------------TYDNIAYMKNQLKMLGFGYDWSRELATCT-PEYYRWEQKFFT 161 (880)
T ss_dssp --------S--CHHHH----------------------HHHHHHHHHHHHHHTTCCCCGGGCEETTS-HHHHHHHHHHHH
T ss_pred --------C--CHHHH----------------------HHHHHHHHHHHHHHhCCCcCCCCCEEcCC-HHHHHHHHHHHH
Confidence 1 11110 12245789999999998887 7777662 456678999999
Q ss_pred HHHHCCCeeccCCCc
Q psy15414 1387 YLEKKGLLELDDGRK 1401 (1458)
Q Consensus 1387 ~L~~~G~~Ye~~ga~ 1401 (1458)
+|.++|++|++++..
T Consensus 162 ~L~ekGliY~~~~~v 176 (880)
T 4arc_A 162 ELYKKGLVYKKTSAV 176 (880)
T ss_dssp HHHHTTCEEEEEECC
T ss_pred HHHHCCCEEEeceeE
Confidence 999999999988776
No 63
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.90 E-value=2.8e-09 Score=131.68 Aligned_cols=146 Identities=17% Similarity=0.165 Sum_probs=100.8
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
..+|.+=|. |+|||+||+||+|.|.+--..||- .|-. |+ ||.
T Consensus 22 ~~~vrtRFA-PsPtG~LHiG~artAl~n~~~Ar~---~~G~----fi--------------LRi---------------- 63 (512)
T 4gri_A 22 MLSTRVRYA-PSPTGLQHIGGIRTALFNYFFAKS---CGGK----FL--------------LRI---------------- 63 (512)
T ss_dssp --CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH---TTCE----EE--------------ECB----------------
T ss_pred CCceeEEeC-cCCCCcccHHHHHHHHHHHHHHHH---cCCE----EE--------------EEe----------------
Confidence 345666665 899999999999999988777753 3321 11 222
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCe---------eEeccccchhHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV---------TLTERGESFYQKH 1380 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~---------~f~esges~~~~~ 1380 (1458)
+|.|+.+. ...+.+.|.+||+|+|+.||. .|.|| .+. +.
T Consensus 64 ---------------------------eDtD~~R~--~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS--~r~-~~ 111 (512)
T 4gri_A 64 ---------------------------EDTDQSRY--SPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQS--QRS-AI 111 (512)
T ss_dssp ---------------------------CCCCTTSC--CHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGG--GCH-HH
T ss_pred ---------------------------CcCCCCcC--CHHHHHHHHHHHHHcCCCCCcCCccCCCCCCcccc--chH-HH
Confidence 11111111 123567999999999999995 46777 553 68
Q ss_pred HHHHHHHHHHCCCeecc-----------------------CCC-------------------cc----------cccc--
Q psy15414 1381 MEQLVPYLEKKGLLELD-----------------------DGR-------------------KI----------MWGE-- 1406 (1458)
Q Consensus 1381 v~~~~~~L~~~G~~Ye~-----------------------~ga-------------------~~----------~~gd-- 1406 (1458)
|.+++++|.++|++|.- +|. .+ .|.|
T Consensus 112 Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~~~~D~v 191 (512)
T 4gri_A 112 YKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGDTSFDDIL 191 (512)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred HHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCCceeeccc
Confidence 99999999999999951 010 00 1111
Q ss_pred -----------cCCCCCceEEecCCccccchhhhHHHHhhhhhcCCCEEEEeecccc
Q psy15414 1407 -----------DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRS 1452 (1458)
Q Consensus 1407 -----------dkdr~~~vl~rsdG~~tY~~~Diayh~~K~~~rgfd~~i~~~dhhg 1452 (1458)
+.|. |+.|+||.||| |.|--.+-.. .|..+||.|.||.-
T Consensus 192 ~g~i~~~~~~~~~D~---vi~r~dg~PtY---~fA~vVDD~~-mgITHViRG~D~l~ 241 (512)
T 4gri_A 192 LGRITWANKDISPDP---VILKSDGLPTY---HLANVVDDYL-MKITHVLRAQEWVS 241 (512)
T ss_dssp TEEEEEEGGGSCSSC---EEECTTSCBCH---HHHHHHHHHH-TTCSEEEEEGGGGG
T ss_pred cceEEecccccCCce---EEEecCCcccc---cccceecccc-cCCceecccccccc
Confidence 1244 99999999999 6778888886 79999999999964
No 64
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=98.88 E-value=1.9e-08 Score=129.40 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=93.3
Q ss_pred cEEEEEecCCCCCCCccccchhh-hhHHHHHHHHHHHcCCeEEEeeecCchhhHHHHHHHHhhhcCCCCCCCCCChhhHH
Q psy15414 214 LRVLVDFSSPNIAKEMHVGHLRS-TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 292 (1458)
Q Consensus 214 ~~V~VEfsSpN~akplHvGHlRs-tiIGdslaril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~i~~l~ 292 (1458)
+++.|-...|+|+|++||||+|+ ++++|+++|.++..||+|.-.--+.+.|.-+-.-+...
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~------------------ 63 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE------------------ 63 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH------------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc------------------
Confidence 46899999999999999999999 89999999999999999999998888887553221100
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcceeccc---chhhhhhhHHHHHH
Q psy15414 293 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVP 369 (1458)
Q Consensus 293 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~s~~~~~~~y~rl~i~f~~~---gEs~y~~~~~~vv~ 369 (1458)
.-+ ++.+++...+.+.+.+++|||++|.. .+..|...+..++.
T Consensus 64 ----------------------------G~~------p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f~ 109 (722)
T 1rqg_A 64 ----------------------------GRS------PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFL 109 (722)
T ss_dssp ----------------------------TCC------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred ----------------------------CCC------HHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHHH
Confidence 001 24567778888999999999999853 23456778999999
Q ss_pred HHHHCCCeeecC
Q psy15414 370 YLEKKGLLELDD 381 (1458)
Q Consensus 370 ~L~~kg~~~~~d 381 (1458)
.|.++|++|+.+
T Consensus 110 ~L~~kG~iY~~~ 121 (722)
T 1rqg_A 110 KAYENGHLVKKV 121 (722)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHCCCEEecc
Confidence 999999998743
No 65
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.87 E-value=2.8e-09 Score=130.43 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhccccCe-eEeccccchhHHHHHHHHHHHHHCCCeec-----------------------cC------
Q psy15414 1349 MICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYLEKKGLLEL-----------------------DD------ 1398 (1458)
Q Consensus 1349 ~~~~~i~~dL~~~gv~~d~-~f~esges~~~~~v~~~~~~L~~~G~~Ye-----------------------~~------ 1398 (1458)
.+.+.|.+||+|+|+.||. .+.|| .++ +.|.+++++|.++|++|. -+
T Consensus 51 ~~~~~i~~dL~wLGl~wde~~~~QS--~r~-~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~l 127 (492)
T 2cfo_A 51 EYTENILEGLQWLGLTWDEGPYFQS--DRL-DLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHL 127 (492)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEEGG--GCH-HHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTC
T ss_pred HHHHHHHHHHHHcCCCCCCCCcccc--CCH-HHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccC
Confidence 3567999999999999997 88888 664 679999999999999994 11
Q ss_pred -----------CCc--ccc----------c------------cc-CCCCCceEEecC-----CccccchhhhHHHHhhhh
Q psy15414 1399 -----------GRK--IMW----------G------------ED-RGSIPMTIVKSD-----GGFTYDTSDLAAIRQRIE 1437 (1458)
Q Consensus 1399 -----------ga~--~~~----------g------------dd-kdr~~~vl~rsd-----G~~tY~~~Diayh~~K~~ 1437 (1458)
|.. |-+ - +- .|- ||.|+| |.|||- +|.-.+...
T Consensus 128 s~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~---Vl~R~d~~p~~G~PtY~---la~vvDD~~ 201 (492)
T 2cfo_A 128 TPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDM---VIARAAPRGEIGYPLYN---LVVVVDDIA 201 (492)
T ss_dssp CHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSE---EEECSCCTTSCCCBCHH---HHHHHHHHH
T ss_pred CHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCCe---EEEEecCCCCCCceeeh---hhhhhhhhc
Confidence 210 101 0 11 354 999999 999995 455578785
Q ss_pred hcCCCEEEEeeccccccc
Q psy15414 1438 EEKADWIVYVTDHRSYHQ 1455 (1458)
Q Consensus 1438 ~rgfd~~i~~~dhhg~~~ 1455 (1458)
.|.++||.|.||+...+
T Consensus 202 -~gIthviRG~D~~~~t~ 218 (492)
T 2cfo_A 202 -MGITDVIRGEDHIGNTP 218 (492)
T ss_dssp -TTCSEEEEEGGGTTHHH
T ss_pred -CCCCeEEEchhhhhCHH
Confidence 89999999999996543
No 66
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.60 E-value=9e-08 Score=125.40 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=94.5
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 1310 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~ 1310 (1458)
++..|=...++|+|+|||||+|+.+++|+++|.++++||+|..-+...++|..|+..|..
T Consensus 33 ~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k-------------------- 92 (878)
T 2v0c_A 33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALK-------------------- 92 (878)
T ss_dssp -EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHH--------------------
T ss_pred CCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHH--------------------
Confidence 344554457999999999999999999999999999999999999999999888776542
Q ss_pred HHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEeccccchhHHHHHHHHHHH
Q psy15414 1311 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGESFYQKHMEQLVPYL 1388 (1458)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esges~~~~~v~~~~~~L 1388 (1458)
.|. +.. .-...+.+.++++|+.+|+.+| +.+.-.. ..|...+..++.+|
T Consensus 93 ----~g~--~~~----------------------~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d-~~~~~~v~~~f~~L 143 (878)
T 2v0c_A 93 ----FGV--HPK----------------------DWTYANIRQAKESLRLMGILYDWDREVTTCE-PEYYRWNQWIFLKM 143 (878)
T ss_dssp ----TTC--CHH----------------------HHHHHHHHHHHHHHHHTTCCCCGGGCCBTTS-HHHHHHHHHHHHHH
T ss_pred ----cCC--CHH----------------------HHHHHHHHHHHHHHHHhCCccCcCCCeecCC-HHHHHHHHHHHHHH
Confidence 111 110 0123456789999999998877 6555441 45667899999999
Q ss_pred HHCCCeeccCCCc
Q psy15414 1389 EKKGLLELDDGRK 1401 (1458)
Q Consensus 1389 ~~~G~~Ye~~ga~ 1401 (1458)
.++|++|+.++..
T Consensus 144 ~~kGliY~~~~~v 156 (878)
T 2v0c_A 144 WEKGLAYRAKGLV 156 (878)
T ss_dssp HHTTCEEEEEEEE
T ss_pred HHCCCEEEcceeE
Confidence 9999999976554
No 67
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=98.55 E-value=6.5e-08 Score=126.61 Aligned_cols=138 Identities=17% Similarity=0.062 Sum_probs=102.7
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHh-chhcCcCCCCCccHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL-QDKFPDYLTKSPPIADL 1308 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~-~~~~p~~~~~~~~i~~~ 1308 (1458)
+++..+-...|||+|+|||||+|+.+++|+++|..+.+||+|...+...++|..|+..+... ... | +.++.+
T Consensus 37 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~-~-----~~~~~~- 109 (821)
T 1ile_A 37 GPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLK-S-----KREIEA- 109 (821)
T ss_dssp SCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCC-S-----HHHHHH-
T ss_pred CCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhccc-c-----cchHhh-
Confidence 34566667789999999999999999999999999999999999999999999999887642 221 1 111111
Q ss_pred HHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--cccCeeEeccccchhHHHHHHHHH
Q psy15414 1309 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY--DRLNVTLTERGESFYQKHMEQLVP 1386 (1458)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~g--v~~d~~f~esges~~~~~v~~~~~ 1386 (1458)
.+ .+.|.+...+ -...+.+.++++|+.+| +.||+++.-.. ..|...+..++.
T Consensus 110 ------~g-----~~~f~~~~~~--------------~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d-~~~~~~v~~~f~ 163 (821)
T 1ile_A 110 ------YG-----IERFNQACRE--------------SVFTYEKEWEAFTERIAYWVDLEDAYATLE-PTYIESIWWSLK 163 (821)
T ss_dssp ------HC-----HHHHHHHHHH--------------HTTTTHHHHTTHHHHTTCCCEEEEEEETTS-HHHHHHHHHHHH
T ss_pred ------cC-----HHHHHHHHHH--------------HHHHHHHHHHHHHHHhCCeEccCCCeEECC-HHHHHHHHHHHH
Confidence 11 1223221111 11235678999999999 89999888762 356678999999
Q ss_pred HHHHCCCeeccCCC
Q psy15414 1387 YLEKKGLLELDDGR 1400 (1458)
Q Consensus 1387 ~L~~~G~~Ye~~ga 1400 (1458)
+|.++|++|...--
T Consensus 164 ~L~~~Gliy~~~~~ 177 (821)
T 1ile_A 164 NLFDRGLLYRDHKV 177 (821)
T ss_dssp HHHHTTCEEEECCE
T ss_pred HHHHcCCeeecCcc
Confidence 99999999996443
No 68
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.51 E-value=2.2e-07 Score=113.94 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHHHHCCCeec
Q psy15414 1350 ICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 1396 (1458)
Q Consensus 1350 ~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L~~~G~~Ye 1396 (1458)
+.+.|.+||+|+|+.||..+.+| .++ +.+.+.+++|.++|++|.
T Consensus 147 ~~~~I~edL~wLGl~wd~~~~qS--dr~-~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 147 AYDMIPADLEWLGVEWDETVIQS--DRM-ETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHHHHHTCCCSEEEEGG--GGH-HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCCCCcccc--cCH-HHHHHHHHHHHHcCCcee
Confidence 56799999999999999988888 554 678899999999999996
No 69
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=98.48 E-value=5.7e-07 Score=114.77 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=77.1
Q ss_pred ccchHHHHHHHHHcCCCCCCCCCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHH
Q psy15414 1207 RVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 1286 (1458)
Q Consensus 1207 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~ 1286 (1458)
.+|..++|..-|..|. + .+|.+=| .+.|||+||+||+|.|++-...|| +|.+. |.
T Consensus 48 ~~fi~~ii~~dl~~g~-~------~~v~tRF-aPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~--fi---------- 102 (851)
T 2hz7_A 48 PNFITEIIERDLEAGK-Y------PRVVTRF-PPDPSGYAHLGHVFASLLDFNTAR-----QYGGQ--FN---------- 102 (851)
T ss_dssp CCHHHHHHHHHHHTTS-C------SSCEEEE-CCCSSSCCBHHHHHHHHHHHHHHH-----HTTCE--EE----------
T ss_pred HHHHHHHHHHHhhcCC-c------CceEEEe-CCCCCCCccHHHHHHHHHHHHHHH-----HcCCE--EE----------
Confidence 4677888887777543 1 1355545 489999999999999998544444 34332 11
Q ss_pred HHHHhchhcCcCCCCCccHHHHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC
Q psy15414 1287 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 1366 (1458)
Q Consensus 1287 l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d 1366 (1458)
||. +|.|+.+ ....+.+.|.+||+|+|+.||
T Consensus 103 ----LRI-------------------------------------------EDTD~~R--~~~e~~~~IledL~wLGl~wd 133 (851)
T 2hz7_A 103 ----LRM-------------------------------------------DDTNPEL--ARQEYVDSIADDLKWLGLDWG 133 (851)
T ss_dssp ----EEE-------------------------------------------CCCCTTT--CCHHHHHHHHHHHHHHTCCCT
T ss_pred ----EEE-------------------------------------------CcCCccc--ccHHHHHHHHHHHHHcCCCCC
Confidence 111 1111111 123466899999999999995
Q ss_pred -eeEeccccchhHHHHHHHHHHHHHCCCeec
Q psy15414 1367 -VTLTERGESFYQKHMEQLVPYLEKKGLLEL 1396 (1458)
Q Consensus 1367 -~~f~esges~~~~~v~~~~~~L~~~G~~Ye 1396 (1458)
..+.+| .++ +.|.+.+++|.++|++|.
T Consensus 134 e~~~~qS--er~-d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 134 EHFYYAS--DYF-DRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp TCEEEGG--GGH-HHHHHHHHHHHHTTSEEE
T ss_pred CCcccHh--hhH-HHHHHHHHHHHHCCCcEe
Confidence 678887 554 678899999999999996
No 70
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.45 E-value=1.1e-06 Score=107.85 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=76.5
Q ss_pred ccchHHHHHHHHHcCCCCCCCCCCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHH
Q psy15414 1207 RVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 1286 (1458)
Q Consensus 1207 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~ 1286 (1458)
.+|+.++|..=|..|. ++ +|.+=|. +.|||+||+||+|.|++-..+|| +|.+. |.
T Consensus 8 ~~fi~~~i~~dl~~~~-~~------~v~tRFa-PSPtG~LHIGhaRtal~n~l~Ar-----~~gG~--fi---------- 62 (553)
T 1qtq_A 8 TNFIRQIIDEDLASGK-HT------TVHTRFP-PEPNGYLHIGHAKSICLNFGIAQ-----DYKGQ--CN---------- 62 (553)
T ss_dssp CCHHHHHHHHHHHHTS-CS------SCEEEEC-CCTTSCCBHHHHHHHHHHHHHHH-----HTTCE--EE----------
T ss_pred hhHHHHHHHhHhhcCC-cC------ceEEEeC-CCCCCCccHHHHHHHHHHHHHHH-----HcCCE--EE----------
Confidence 4678888888777653 22 3555554 89999999999999998665555 34332 11
Q ss_pred HHHHhchhcCcCCCCCccHHHHHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC
Q psy15414 1287 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 1366 (1458)
Q Consensus 1287 l~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d 1366 (1458)
||. +|.|+.+ ....+.+.|.+||+|+|+.||
T Consensus 63 ----LRi-------------------------------------------eDTD~~R--~~~e~~~~I~edL~wLGl~wd 93 (553)
T 1qtq_A 63 ----LRF-------------------------------------------DDTNPVK--EDIEYVESIKNDVEWLGFHWS 93 (553)
T ss_dssp ----EEE-------------------------------------------CCCCGGG--CCHHHHHHHHHHHHHTTCCCS
T ss_pred ----EEE-------------------------------------------CCCCchh--cCHHHHHHHHHHHHHcCCCCC
Confidence 111 1111111 112466899999999999995
Q ss_pred -eeEeccccchhHHHHHHHHHHHHHCCCeec
Q psy15414 1367 -VTLTERGESFYQKHMEQLVPYLEKKGLLEL 1396 (1458)
Q Consensus 1367 -~~f~esges~~~~~v~~~~~~L~~~G~~Ye 1396 (1458)
..+.+| .++ +.+.+.+++|.++|++|.
T Consensus 94 e~~~~qS--er~-~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 94 GNVRYSS--DYF-DQLHAYAIELINKGLAYV 121 (553)
T ss_dssp SSCEEGG--GGH-HHHHHHHHHHHHTTSEEE
T ss_pred CCCeehc--ccH-HHHHHHHHHHHHCCCcee
Confidence 678888 665 445567789999999996
No 71
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=98.39 E-value=1.1e-06 Score=110.14 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=89.6
Q ss_pred CCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHH
Q psy15414 1229 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 1308 (1458)
Q Consensus 1229 ~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~ 1308 (1458)
..++..|--.=++|+|++|+||+|+.++.|+++|.++..||+|.----..|+|.-|..-|..
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k------------------ 68 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ------------------ 68 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH------------------
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH------------------
Confidence 34444554444689999999999999999999999999999998766677788555433221
Q ss_pred HHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccCeeEeccccchhHHHHHHHHHHH
Q psy15414 1309 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYL 1388 (1458)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d~~f~esges~~~~~v~~~~~~L 1388 (1458)
.|. +..+ -.+.+.+.++++++.+|+.+|.+..-. ...|...+.+++.+|
T Consensus 69 ------~g~--~~~e----------------------~~~~~~~~~~~~~~~lgi~~D~~~~T~-~~~~~~~v~~~f~~L 117 (542)
T 3u1f_A 69 ------KQV--SPYD----------------------FTTAVAGEFKKCFEQMDYSIDYFIRTT-NEQHKAVVKELWTKL 117 (542)
T ss_dssp ------TTS--CHHH----------------------HHHHHHHHHHHHHHHHTCCCSEEEETT-CHHHHHHHHHHHHHH
T ss_pred ------cCC--CHHH----------------------HHHHHHHHHHHHHHHhCCccCcCccCC-CHHHHHHHHHHHHHH
Confidence 111 1111 123455789999999999999755433 135666899999999
Q ss_pred HHCCCeeccCCC
Q psy15414 1389 EKKGLLELDDGR 1400 (1458)
Q Consensus 1389 ~~~G~~Ye~~ga 1400 (1458)
.++|++|+..+-
T Consensus 118 ~~~G~iy~~~~~ 129 (542)
T 3u1f_A 118 EQKGDIYLGRYE 129 (542)
T ss_dssp HHTTCEEEEEEE
T ss_pred hhcCcEEeccee
Confidence 999999996544
No 72
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=98.28 E-value=8.9e-07 Score=116.56 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=101.0
Q ss_pred CceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHH
Q psy15414 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 1309 (1458)
Q Consensus 1230 ~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~ 1309 (1458)
+++..+-..-+||+|+|||||+++.+++|+++|..+.+||+|..-.--..+|.-|+.-+...... |
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~-~------------- 112 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVD-R------------- 112 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCC-S-------------
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCC-c-------------
Confidence 34667777889999999999999999999999999999999999999999999888877653110 1
Q ss_pred HHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhcc--ccCeeEeccccchhHHHHHHHHHH
Q psy15414 1310 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD--RLNVTLTERGESFYQKHMEQLVPY 1387 (1458)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv--~~d~~f~esges~~~~~v~~~~~~ 1387 (1458)
..++.+ .|++.. ++. ...+.+.++++|+.+|+ +||+++.-.. ..|...+..++.+
T Consensus 113 -------~~~~~~-~f~~~~-------------~~~-~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d-~~~~~~v~~~F~~ 169 (917)
T 1ffy_A 113 -------KKMSTA-EFREKC-------------KEF-ALEQIELQKKDFRRLGVRGDFNDPYITLK-PEYEAAQIRIFGE 169 (917)
T ss_dssp -------TTTCHH-HHHHHH-------------HHH-HHHHHHHHHHHHHTTTCCSCTTSCEETTS-HHHHHHHHHHHHH
T ss_pred -------hhCCHH-HHHHHH-------------HHH-HHHHHHHHHHHHHHhCeEEccCCCeEcCC-HHHHHHHHHHHHH
Confidence 012222 222222 111 24567899999999999 5889887662 3566789999999
Q ss_pred HHHCCCeeccC
Q psy15414 1388 LEKKGLLELDD 1398 (1458)
Q Consensus 1388 L~~~G~~Ye~~ 1398 (1458)
|.++|++|...
T Consensus 170 l~~kGliYr~~ 180 (917)
T 1ffy_A 170 MADKGLIYKGK 180 (917)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHcCCeEecc
Confidence 99999999954
No 73
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=98.22 E-value=7.7e-06 Score=106.85 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=95.6
Q ss_pred CCceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHH-HhchhcCcCCCCCccHHH
Q psy15414 1229 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA-HLQDKFPDYLTKSPPIAD 1307 (1458)
Q Consensus 1229 ~~~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~-~~~~~~p~~~~~~~~i~~ 1307 (1458)
.+++..|-..-+||||+|||||+++.+++|+++|..+.+||+|..-.--..+|--++.-+. .+.. .|...
T Consensus 32 ~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~-------~g~~~-- 102 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLK-------EGKTR-- 102 (862)
T ss_dssp CSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTT-------TTSCC--
T ss_pred CCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHH-------cCCCh--
Confidence 4567778778899999999999999999999999999999999999999999965554332 1111 01000
Q ss_pred HHHHHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEeccccchhHHHHHHHH
Q psy15414 1308 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGESFYQKHMEQLV 1385 (1458)
Q Consensus 1308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esges~~~~~v~~~~ 1385 (1458)
..+..+ .|.+..++ -..++.+.++++|+.+|+.+| +.+.-.. ..|...+..++
T Consensus 103 ---------~~~~~~-~f~~~~~~--------------~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d-~~~~~~v~~~F 157 (862)
T 1gax_A 103 ---------HDLGRE-KFLERVWQ--------------WKEESGGTILKQLKRLGASADWSREAFTMD-EKRSRAVRYAF 157 (862)
T ss_dssp ---------SCCCTT-HHHHHHHH--------------HHHHHHHHHHHHHHHTTCCCCGGGCEETTS-HHHHHHHHHHH
T ss_pred ---------HHcCHH-HHHHHHHH--------------HHHHHHHHHHHHHHHhCccccCCCCcccCC-HHHHHHHHHHH
Confidence 011111 23222211 134577899999999998776 3222221 35667899999
Q ss_pred HHHHHCCCeeccC
Q psy15414 1386 PYLEKKGLLELDD 1398 (1458)
Q Consensus 1386 ~~L~~~G~~Ye~~ 1398 (1458)
.+|.++|++|...
T Consensus 158 ~~L~~kGliYrg~ 170 (862)
T 1gax_A 158 SRYYHEGLAYRAP 170 (862)
T ss_dssp HHHHTTSSEEEEC
T ss_pred HHHHHCCCEEecc
Confidence 9999999999954
No 74
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.88 E-value=1.5e-05 Score=105.79 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=101.5
Q ss_pred ceEEEeecCCCCCccccccchhHHHHHHHHHHHHHHcCCcEEEEeeeCCcccHHHHHHHHhchhcCcCCCCCccHHHHHH
Q psy15414 1231 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 1310 (1458)
Q Consensus 1231 ~~v~ve~vsanptgplh~gh~r~~~~gd~~~~~l~~~g~~v~re~yvnDag~Q~~~l~~~~~~~~p~~~~~~~~i~~~~~ 1310 (1458)
++..+-..-+||||+||+||+|+.+++|+++|..+.+||+|..-+--...|.-++..|..+... +.. .+..
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~-------~~~--~~~~ 104 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNR-------DPK--TIWI 104 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTT-------CHH--HHHH
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhcc-------chh--HHHH
Confidence 5677878889999999999999999999999999999999999888888899888777654320 000 1111
Q ss_pred HHHHhCCCCChHHHHHHhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHhccccC--eeEecccc-chhHHHHHHHHHH
Q psy15414 1311 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN--VTLTERGE-SFYQKHMEQLVPY 1387 (1458)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dL~~~gv~~d--~~f~esge-s~~~~~v~~~~~~ 1387 (1458)
+...+| .+.++ +..+. .+ ..-+.++.+.++++|+.+|+.+| +.|.-..- .-|...+..++.+
T Consensus 105 ~~~~~g--i~~~~-~~~~~-----------~~-~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~ 169 (967)
T 1wz2_A 105 YRDVYK--VPEEI-LWTFE-----------DP-INIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWK 169 (967)
T ss_dssp HHTTSC--CCHHH-HHGGG-----------SH-HHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHH
T ss_pred HHHhcC--CCHHH-HHHHH-----------HH-HHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHH
Confidence 111112 22222 11111 12 23356778899999999998665 55544410 2355689999999
Q ss_pred HHHCCCeeccCCC
Q psy15414 1388 LEKKGLLELDDGR 1400 (1458)
Q Consensus 1388 L~~~G~~Ye~~ga 1400 (1458)
|.++|++|...--
T Consensus 170 L~~kGliyr~~~~ 182 (967)
T 1wz2_A 170 LKEKGYIVKGAHR 182 (967)
T ss_dssp TTTTTCEEECCCC
T ss_pred HHHCCCEEEeceE
Confidence 9999999995443
No 75
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=94.50 E-value=0.016 Score=67.57 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=47.8
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSEL 878 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~DL 878 (1458)
++++.++ +|.||..|+..-..+++.+|+.. ....|..+ +.+.+|+|||||.||.|++.|-
T Consensus 169 ~~~~~v~--~G~DQ~~~~~l~rdla~~~~~~~---p~~l~~pl--l~~l~G~KMSKS~~n~I~l~d~ 228 (323)
T 2cyb_A 169 LGVDLAV--GGIDQRKIHMLARENLPRLGYSS---PVCLHTPI--LVGLDGQKMSSSKGNYISVRDP 228 (323)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGGTCCC---CEEEEECC--CBCTTSSBCCTTTTCSCBTTCC
T ss_pred cCCCEEE--echhhHHHHHHHHHHHHhcCCCC---ceEEecCc--ccCCCCCcccCCcCceeCCCCC
Confidence 4667654 99999999998888888899743 34566655 6677899999999999998764
No 76
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=93.29 E-value=0.031 Score=66.34 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=39.9
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCC-ccchHHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD-TVKLSEL 878 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gn-vI~l~DL 878 (1458)
++.+.++ +|.||..|+..-..+++.+|+.. ....|..+ +.+.+|+|||||.|| .|++.|=
T Consensus 177 ~~a~~v~--~G~DQ~~~~~l~rdl~~r~~~~~---p~~l~~pl--l~gldG~KMSKS~~ns~I~L~d~ 237 (372)
T 1n3l_A 177 LKVDAQF--GGIDQRKIFTFAEKYLPALGYSK---RVHLMNPM--VPGLTGSKMSSSEEESKIDLLDR 237 (372)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGGTCCC---CEEEEECC--CCCSSCC-------CCSCBTTCC
T ss_pred hcCCEEE--cChhHHHHHHHHHHHHHHcCCCC---CEEEecCc--cCCCCcccccCCCCCCeEeccCC
Confidence 4566555 89999999999999999999744 34556655 667789999999999 7987543
No 77
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.039 Score=65.94 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=38.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCC-CcccccccCCc-cchHHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED-RKKFKTRSGDT-VKLSEL 878 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~-G~KMSKR~Gnv-I~l~DL 878 (1458)
++.+.++ .|.||..|+..-..+++.+|+.. ....|..+ +.+.+ |+|||||.||. |++.|=
T Consensus 181 ~~~~~v~--~G~DQ~~~~~l~rdl~~r~~~~~---p~~l~~pl--l~gl~~G~KMSKS~~ns~I~L~D~ 242 (394)
T 2dlc_X 181 LDVDCQF--GGVDQRKIFVLAEENLPSLGYKK---RAHLMNPM--VPGLAQGGKMSASDPNSKIDLLEE 242 (394)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGGTCCC---CEEEEECC--CCCCC----------CCSCBTTCC
T ss_pred hCCCEEe--cCccHHHHHHHHHHHHHHcCCCC---CEEEeccc--ccCCCCCCcCCCCCCCCEEeccCC
Confidence 4666655 89999999999999999999743 35567665 66667 89999999996 987543
No 78
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=92.46 E-value=0.057 Score=63.57 Aligned_cols=58 Identities=14% Similarity=-0.056 Sum_probs=32.6
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
+.+.+ ++|.||..|+..-..+++.+|..+ ....+..+ +.+.+|+|||||.||.|++.|
T Consensus 210 ~~~i~--p~G~DQ~~~i~l~rdla~r~n~~~---~~~l~~pl--l~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 210 GCRVQ--LGGSDQLGNIMSGYEFINKLTGED---VFGITVPL--ITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp CCCEE--EEEGGGHHHHHHHHHHHHHHSSCC---CEEEEECC--CC-------------CCBSST
T ss_pred CCcEE--eccHHHHHHHHHHHHHHHHhCCCC---cccccccc--ccCCCcccccCCCCCeeeccC
Confidence 55544 489999999999999999998633 23344443 666689999999999999865
No 79
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=92.01 E-value=0.049 Score=63.30 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=43.3
Q ss_pred EEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 817 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 817 iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
.|=++|.||..|+..-..+++.+|..++ . ++...++.+.+|+|||||.||.|++.|
T Consensus 193 ~v~~gG~DQ~~~i~l~rdla~r~n~~~~---~--~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 193 VLCIGGSDQWGNITSGIDLTRRLHQNQV---F--GLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHCCCC---E--EEECCCCBCTTSCBTTEETTEECBSST
T ss_pred eEEecCchhHHHHHHHHHHHHHhCCCCc---e--eeccCccCCCCcccccCCCCCeeeccC
Confidence 3667899999999999999998886321 2 233344666689999999999999876
No 80
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=91.00 E-value=0.13 Score=61.87 Aligned_cols=59 Identities=14% Similarity=0.024 Sum_probs=44.7
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCcccccccCC-ccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD-TVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~KMSKR~Gn-vI~l~D 877 (1458)
++.+..+ +|.||..|+..-..+++.+|..+ ....+.. ++.+.+|+|||||.|| .|+++|
T Consensus 186 ~~~~i~~--gG~DQ~~ni~lgrdlarr~~~~~---~~~l~~p--lL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 186 HGCTLQI--GGADQWGNIIAGVRLVRQKLGAT---VHALTVP--LVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp HCCCEEE--ECSTTHHHHHHHHHHHHHHHCCC---CEEEECC--CCBCTTSCBTTBCSSSCBCBSST
T ss_pred CCCcEEe--ccHHHHHHHHHHHHHHHHhCCCC---ccccccc--cccCCCcCcCCCCCCCCeEEccC
Confidence 3555444 89999999999999999888632 2333433 4667799999999999 999864
No 81
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=90.79 E-value=0.1 Score=62.69 Aligned_cols=57 Identities=18% Similarity=0.060 Sum_probs=42.9
Q ss_pred eEEEEeeCCccccHHHHHHHHHHc-CCCCCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 816 WIVYVTDLGQGVHFRLLEECAKKA-GILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 816 ~iIyVvg~dq~~hf~~l~~il~al-G~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
-.+=++|.||..|+..-..+++.+ +..+ ....+.+ ++.+.+|+|||||.||.|+++|
T Consensus 186 ~~i~~gG~DQ~~ni~lgrdlarr~~~~~~---~~~lt~p--ll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 186 CRLQIGGSDQWGNITAGLELIRKTKGEAR---AFGLTIP--LVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHC--C---CEEEEEC--CCCCTTSCCTTCCSSCCCBSST
T ss_pred CcEEeccHHHHHHHHHHHHHHHHhcCCCC---eeecccc--cccCCCcccccCCCCCeEecCC
Confidence 345558999999999999999988 7532 2334444 4667799999999999999864
No 82
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=90.79 E-value=0.11 Score=62.41 Aligned_cols=57 Identities=19% Similarity=0.084 Sum_probs=44.0
Q ss_pred eEEEEeeCCccccHHHHHHHHHHc-CCCCCCcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 816 WIVYVTDLGQGVHFRLLEECAKKA-GILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 816 ~iIyVvg~dq~~hf~~l~~il~al-G~~~~~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
-.+=++|.||..|+..-..+++.+ +..+ ....+..+ +.+.+|+|||||.||.|+++|
T Consensus 187 ~~i~~gG~DQ~~ni~~grdla~r~~~~~~---~~~l~~pl--l~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 187 CKIQVGGSDQWGNITSGIELMRRMYGQTD---AYGLTIPL--VTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHCCCC---CEEEEECC--CBCTTSCBTTBCSSSBCBSST
T ss_pred CcEEeccHHHHHHHHHHHHHHHHhcCCCC---eeEeeccc--ccCCccccccCCCCCeEecCC
Confidence 345558999999999999999998 7532 23344444 677799999999999999864
No 83
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=89.42 E-value=0.16 Score=61.26 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=44.2
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCc-ccccccCCccchHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK-KFKTRSGDTVKLSE 877 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~-KMSKR~GnvI~l~D 877 (1458)
+.+.++ +|.||..|+..-..+++.+|..+ ....+.. ++.+.+|. |||||.||.|++.|
T Consensus 187 ~~~l~~--gG~DQ~~ni~l~rdlarr~~~~~---~~~lt~p--ll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 187 RADVEM--GGTDQRFNLLVGREVQRAYGQSP---QVCFLMP--LLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp TCSEEE--EEGGGHHHHHHHHHHHHHTTCCC---CEEEEEC--CCBCTTSSSBCCGGGTCCCBTTS
T ss_pred CccEEE--echHHHHHHHHHHHHHHHhCCCC---ceEeecc--cccCCCCccccCcCCCCeeCCCC
Confidence 455444 99999999998888999998632 2334444 46677886 99999999999876
No 84
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=89.15 E-value=0.098 Score=61.22 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=43.0
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCC--CCC-CcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGI--LNP-NKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~--~~~-~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
++.+.++ +|.||..|+..-..+++.++. .+. ..+...+...-++.+.+|+|||||.||.|++.|
T Consensus 152 ~~~~~vp--vG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 152 YKAEGVP--VGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTCSEEE--ECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred hCCCEEE--cccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 4566555 999999999988888887642 100 012222221234667789999999999998866
No 85
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=88.49 E-value=0.066 Score=62.23 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=43.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCC--CCCC-cceEEEE-EeEEEecCCCcccccccCCccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGI--LNPN-KTRMDFV-GFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~--~~~~-~~~~~H~-~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
++.+.+. +|.||..|+.--..+++.+|. .+.. .+...|. ...+|.+-+|+|||||.||.|++.|
T Consensus 138 ~~~~~vp--vG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIVP--VGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEEE--eccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 4556555 999999999988888887753 0000 1122332 1235667789999999999998864
No 86
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=88.00 E-value=0.21 Score=58.38 Aligned_cols=61 Identities=28% Similarity=0.236 Sum_probs=43.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHc----C--CCCCCcceEEEEEe-EEEecCCC-cccccccCCccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKA----G--ILNPNKTRMDFVGF-GVVLGEDR-KKFKTRSGDTVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~al----G--~~~~~~~~~~H~~f-g~V~~~~G-~KMSKR~GnvI~l~D 877 (1458)
++.+.++ +|.||..|+..-..+++.+ | +.. +...|... -++.+.+| +|||||.||.|++.|
T Consensus 140 ~~~~lvp--~G~DQ~~~i~l~rdla~r~n~~~g~~f~~---P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 140 YKADTVP--VGEDQVQHIELTREIARRFNHLFGETFPE---PQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp TTCCEEE--CCGGGCHHHHHHHHHHHHHHHHHSSCCCC---CEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred hCCcEEE--cccchHHHHHHHHHHHHHHHhhcCcccCC---CeeecccccccccCCCCccccCCCCCCeeeCcC
Confidence 4556555 9999999999888888765 5 322 23344421 24667788 899999999998754
No 87
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=87.66 E-value=0.25 Score=59.52 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=37.9
Q ss_pred EEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC--cccccccCC-ccchHH
Q psy15414 817 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGD-TVKLSE 877 (1458)
Q Consensus 817 iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G--~KMSKR~Gn-vI~l~D 877 (1458)
.+=.+|.||..|+.--..+++.+|+..| ...|..+ +.+-+| +|||||.|| .|++.|
T Consensus 251 ~lvp~G~DQ~~~i~l~Rdla~r~~~~~p---~~l~~~l--l~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 251 CLIPCAIDQDPYFRVCRDVADKLKYSKP---ALLHSRF--FPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHTSCCC---EEEEECC--CCCTTC--------CGGGCCBTTC
T ss_pred eEEEeccCcHHHHHHHHHHHHHhCCCCc---eeecccc--ccCCCCCccccCCCCCCCeEeccC
Confidence 4445999999999988999999997443 3455544 667788 899999999 898754
No 88
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=87.21 E-value=0.18 Score=59.97 Aligned_cols=56 Identities=27% Similarity=0.386 Sum_probs=33.3
Q ss_pred EEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC--cccccccCCccchHH
Q psy15414 817 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGDTVKLSE 877 (1458)
Q Consensus 817 iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G--~KMSKR~GnvI~l~D 877 (1458)
.+=.+|.||..|+..-..+++.+|+..| ...|..+ +.+-+| +|||||.||.|++.|
T Consensus 226 ~lvp~G~DQ~~~i~l~Rdla~r~~~~~p---~~l~~~~--l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 226 CLIPQAIDQDPYFRLTRDIAPRLGYLKP---AVIHSKF--FPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEGGGHHHHHHHHHTHHHHTCCCC---EEEEECC--CCCC-------------CCBTTC
T ss_pred eEEEeccchHHHHHHHHHHHHHcCCCCc---eeecccc--ccCCCCCcccCCCCCCCcccCCC
Confidence 3456899999999988899999997443 3455555 566677 799999999998754
No 89
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=87.06 E-value=0.24 Score=58.45 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=44.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCC-----------------Ccccccc-cCCcc
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED-----------------RKKFKTR-SGDTV 873 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~-----------------G~KMSKR-~GnvI 873 (1458)
++++.++ +|.||..|+..-..+++.+|+..| ...|..+ +.+.+ |+||||| .||.|
T Consensus 176 ~~~~~v~--~G~DQ~~~~~l~rdla~r~~~~~p---~~l~~~l--l~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I 248 (364)
T 2cya_A 176 MDLDIAL--GGMDQRKAHMLARDVAEKLGRKKP---VAIHTPI--ISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAV 248 (364)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHHTTTTCCCC---EEEEECC--CBCSSCC----------------CBCCSSSGGGSC
T ss_pred cCCCEEe--ccchHHHHHHHHHHHHHHcCCCCc---eeeccce--eeCCCcccccccccccccccccccccCCCCCCCEe
Confidence 4666555 999999999988899999987432 3456555 55555 7899999 78899
Q ss_pred chHHH
Q psy15414 874 KLSEL 878 (1458)
Q Consensus 874 ~l~DL 878 (1458)
++.|=
T Consensus 249 ~L~d~ 253 (364)
T 2cya_A 249 FVVDS 253 (364)
T ss_dssp BTTCC
T ss_pred eccCC
Confidence 87543
No 90
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=86.97 E-value=0.17 Score=60.96 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=41.2
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC--cccccccCC-ccchHH
Q psy15414 821 TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGD-TVKLSE 877 (1458)
Q Consensus 821 vg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G--~KMSKR~Gn-vI~l~D 877 (1458)
+|.||..|+.--..+++.+|+..| ...|..+ +.+.+| +|||||.|| .|++.|
T Consensus 262 vG~DQ~~~i~l~Rdla~r~~~~~P---~~l~~pl--l~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 262 CAIDQDPYFRMTRDVAPRIGYPKP---ALLHSTF--FPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCCCC---EEEEECC--CEETTEEEEECCTTSSSSCCBTTC
T ss_pred eehhhHHHHHHHHHHHHHhCCCCc---eEeeccc--ccCCCCCccccCCCCCCCeeeccC
Confidence 799999999888888899997443 3355554 666688 799999999 898754
No 91
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=86.27 E-value=0.2 Score=61.19 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=41.8
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC--cccccccCC-ccchHHH
Q psy15414 821 TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGD-TVKLSEL 878 (1458)
Q Consensus 821 vg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G--~KMSKR~Gn-vI~l~DL 878 (1458)
+|.||..|+..-..+++.+|+..| ...|..+ +.+.+| +|||||.|| .|++.|=
T Consensus 309 vG~DQ~~~i~l~Rdla~r~~~~~p---~~l~~pl--l~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 309 CAIDQDPYFRMTRDVAPRIGYPKP---ALLHSTF--FPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCCCC---EEEEECC--CEETTEEEEECCTTSTTCCCBTTCC
T ss_pred ccccHHHHHHHHHHHHHHhCCCCc---eeeeccc--ccCCCCCccccCCCCCCCceeecCC
Confidence 799999999888889999997443 3455555 666688 799999999 8987543
No 92
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=86.26 E-value=0.33 Score=57.63 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=40.6
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCc-ccccc-cCCccchHH
Q psy15414 821 TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK-KFKTR-SGDTVKLSE 877 (1458)
Q Consensus 821 vg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~-KMSKR-~GnvI~l~D 877 (1458)
+|.||..|+.--..+++.+|+..| ...|..+ +.+-+|. ||||| .||.|++.|
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n~~~p---~~l~~~~--l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLNFIQP---TVLFHKM--VPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCCCC---EEEEECC--CCCTTCTTCCCCCCTTTSCBTTC
T ss_pred cccchHHHHHHHHHHHHHcCCCCc---eEeecCe--eeCCCCCCccCcCCCCCeeecCC
Confidence 599999999999999999997443 3345554 5666774 99999 799998754
No 93
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=86.04 E-value=0.2 Score=59.65 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=32.7
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC--cccccccCC-ccchHH
Q psy15414 818 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGD-TVKLSE 877 (1458)
Q Consensus 818 IyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G--~KMSKR~Gn-vI~l~D 877 (1458)
+=.+|.||..|+..-..+++.+|+..| ...|..+ +.+-+| +|||||.|| .|++.|
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~r~~~~~p---~~l~~~~--l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAPRLGYLKP---SSIHSIF--LPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTGGGTCCCC---EEEEECC--CCC-------------CCCCBTTC
T ss_pred ecccccchHHHHHHHHHHHHHcCCCCc---eeeccCc--ccCCCCCCcCCCCCCCCCeEeccC
Confidence 446899999999988899999997443 3456555 566677 799999987 898754
No 94
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=85.22 E-value=0.2 Score=58.82 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=42.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHc----C--CCCCCcceEEEEEeEEEecCCCc-ccccccCCccchHHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKA----G--ILNPNKTRMDFVGFGVVLGEDRK-KFKTRSGDTVKLSEL 878 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~al----G--~~~~~~~~~~H~~fg~V~~~~G~-KMSKR~GnvI~l~DL 878 (1458)
++.+.++ +|.||..|+..-..+++.+ | +..| ...+....++.+-+|+ |||||.||.|++.|=
T Consensus 161 ~~~~~vp--vG~DQ~~hi~l~rdia~r~n~~yg~~f~~P---~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 161 FGATLVP--VGDDQLPMLEQTREIVRRFNALYAPVLAEP---QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS 229 (351)
T ss_dssp HTCSEEE--ECGGGHHHHHHHHHHHHHHHHHTCSCSCCC---EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC
T ss_pred cCCCEEE--ecCCcHHHHHHHHHHHHHHHhhcccccCCC---eeeeecCccccCCCCccccCCCCCCeecCCCC
Confidence 4566555 9999999999888888765 3 2222 2222112346666886 999999999987543
No 95
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=84.97 E-value=0.25 Score=58.81 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=40.1
Q ss_pred EEEEeeCCccccHHHHHHHHHHcCC-C---------CC----CcceEEEEEeEEEecCCCcccccccCCccchHH
Q psy15414 817 IVYVTDLGQGVHFRLLEECAKKAGI-L---------NP----NKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877 (1458)
Q Consensus 817 iIyVvg~dq~~hf~~l~~il~alG~-~---------~~----~~~~~~H~~fg~V~~~~G~KMSKR~GnvI~l~D 877 (1458)
.+=++|.||..|+..-..+++.++. . .| ......+.. ++.+.+|+|||||.||.|+++|
T Consensus 234 ~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~p--ll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 234 QMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVP--LLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECC--CCBCTTCCBTTBCSSSBCBSST
T ss_pred cEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccc--cCcCCchhhccCCCCCeeeccC
Confidence 3445899999999888777765421 0 01 112233444 4677799999999999999865
No 96
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=84.78 E-value=0.51 Score=56.31 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=43.1
Q ss_pred eEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC--ccccccc-CCccchHH
Q psy15414 816 WIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRS-GDTVKLSE 877 (1458)
Q Consensus 816 ~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G--~KMSKR~-GnvI~l~D 877 (1458)
-.+=.+|.||..|+.--..+++.+|+..| ...|..+ +.+-+| +|||||. ||.|++.|
T Consensus 244 a~lvpvG~DQ~~~i~l~Rdla~r~~~~~p---~~l~~~~--l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 244 MCLVPAAVDQDPFFRLARDKAKALGEKKP---SSIYVSL--LPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHTCCCC---EEEEECC--CCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CeEEeeccchHHHHHHHHHHHHHcCCCCc---eeeccCc--ccCCCCCCcCCCCCCCCCcccCCC
Confidence 34445899999999988899999997443 3445555 566688 6999998 78998754
No 97
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=84.27 E-value=0.3 Score=58.02 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=41.2
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC--cccccccCC-ccchHH
Q psy15414 820 VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGD-TVKLSE 877 (1458)
Q Consensus 820 Vvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G--~KMSKR~Gn-vI~l~D 877 (1458)
.+|.||..|+..-..+++.+|+..| ...|..+ +.+-+| +|||||.+| .|++.|
T Consensus 212 pvG~DQ~~hl~l~Rdla~r~n~~~p---~~l~~~~--l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 212 PAAIDQDPYWRLQRDFAESLGYYKT---AALHSKF--VPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTSCCC---EEEEECC--CCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred ecccchHHHHHHHHHHHHHcCCCCC---eeeeccc--ccCCCCCccccccCCCCCeeeCCC
Confidence 7999999999988899999997443 3455554 566677 599999998 887644
No 98
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=82.39 E-value=0.23 Score=57.78 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=42.0
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcC------CCCCCcceEEEE-EeEEEecCCC--cccccccCC-c--cchHHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAG------ILNPNKTRMDFV-GFGVVLGEDR--KKFKTRSGD-T--VKLSEL 878 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG------~~~~~~~~~~H~-~fg~V~~~~G--~KMSKR~Gn-v--I~l~DL 878 (1458)
++.+.++ +|.||..|+..-..+++.+| +..| ...|. ...++.+-+| +|||||.|| . |++.|=
T Consensus 136 ~~~~~vp--vG~DQ~~~iel~Rdia~r~n~~yg~~f~~P---~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~ 209 (328)
T 1i6k_A 136 YNTDIVP--VGEDQKQHIELTRDLAERFNKRYGELFTIP---EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDD 209 (328)
T ss_dssp TTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCSCCCCC---EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCC
T ss_pred hCCCEEe--cccchHHHHHHHHHHHHHhCcccccccCCC---eeeeccccccccCCCCCccCCCCCCCCcCceeeecCC
Confidence 4566555 99999999998888888776 2222 22222 1123556677 899999999 6 887543
No 99
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=81.79 E-value=0.45 Score=55.07 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=39.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCC-cccccccCCccchHHHHHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR-KKFKTRSGDTVKLSELLDE 881 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G-~KMSKR~GnvI~l~DLLde 881 (1458)
++++.++ +|.||..|+.....++ . .. ....|..+ +.+.+| +|||||.||.|++.|=-++
T Consensus 162 ~~~~~v~--~G~DQ~~~~~l~R~i~---~-~~---~~~~~~~~--l~~l~G~~KMSKS~~~~I~L~d~~~~ 221 (314)
T 2zp1_A 162 LGVDVAV--GGMEQRKIHMLARELL---P-KK---VVCIHNPV--LTGLDGEGKMSSSKGNFIAVDDSPEE 221 (314)
T ss_dssp HTCSEEE--EEGGGHHHHHHHHHHS---S-SC---CEEEEECC--CBCTTSSSBCCTTTTCSCBTTCCHHH
T ss_pred hCCCEEE--cChhHHHHHHHHHHhc---C-CC---cEEeeccc--cccCCcccccCCCCcceecCCCCHHH
Confidence 3566555 8999999885444432 2 22 34456554 666678 7999999999988654443
No 100
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=81.58 E-value=0.55 Score=55.58 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=42.9
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEec-CCCc-cccccc-CCccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLG-EDRK-KFKTRS-GDTVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~-~~G~-KMSKR~-GnvI~l~D 877 (1458)
++.|.+ .+|.||..|+..-..+++.+|... ...+.|..+ |.+ .+|. |||||. ||.|++.|
T Consensus 199 l~ad~v--pgG~DQ~~~l~l~Rdla~r~~~~~--~~~~l~~p~--l~gL~dG~~KMSKS~~~~~I~L~D 261 (373)
T 3vgj_A 199 LNVDIC--QLGIDQRKVNMLAREYCDIKKIKK--KPVILSHGM--LPGLLEGQEKMSKSDENSAIFMDD 261 (373)
T ss_dssp TTCSEE--CCBGGGHHHHHHHHHHHHHHTCSC--CCEEEEBCC--CCCSSTTCCSCCSSSTTCCCBTTC
T ss_pred cCCcEE--EcchhhHHHHHHHHHHHHHhCCCC--CceEEeCCe--eecCCCCCCCCcCCCCCCeeecCC
Confidence 456644 489999999999999999998631 123345444 666 3784 999999 57998743
No 101
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=81.45 E-value=0.46 Score=55.75 Aligned_cols=59 Identities=15% Similarity=0.078 Sum_probs=42.4
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecC-CC-ccccccc-CCccchHHH
Q psy15414 813 KADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGE-DR-KKFKTRS-GDTVKLSEL 878 (1458)
Q Consensus 813 ~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~-~G-~KMSKR~-GnvI~l~DL 878 (1458)
+.+.++ +|.||..|+..-..+++.+|+..| .+.|.. ++.+- +| +|||||. ||.|++.|=
T Consensus 186 ~~~~~~--~G~DQ~~~i~l~Rdia~r~~~~~p---~~~~~~--~l~gL~dg~~KMSKS~~~~~I~L~d~ 247 (348)
T 2j5b_A 186 GIDICQ--LGIDQRKVNMLAIEYANDRGLKIP---ISLSHH--MLMSLSGPKKKMSKSDPQGAIFMDDT 247 (348)
T ss_dssp CCSEEC--CBGGGHHHHHHHHHHHHHTTCCCC---EEEEBC--CCCCTTCSSCCCSTTCGGGSCBTTCC
T ss_pred CCcEEE--eccChHHHHHHHHHHHHHhCCCCc---eeecCc--cccCCCCcccccccCCCCCeEeecCC
Confidence 555544 899999999888899999997432 234444 35555 56 6999999 688987543
No 102
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=79.44 E-value=0.44 Score=55.89 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=42.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcC------CCCCCcceEEEEE-eEEEecCCC--cccccccCC---ccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAG------ILNPNKTRMDFVG-FGVVLGEDR--KKFKTRSGD---TVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG------~~~~~~~~~~H~~-fg~V~~~~G--~KMSKR~Gn---vI~l~D 877 (1458)
++.+.++ +|.||..|+..-..+++.++ +.. +...|.. ..+|.+-+| +|||||.|| .|++.|
T Consensus 146 ~~a~~vp--vG~DQ~~~lel~Rdia~r~n~~yg~~f~~---P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 146 YQPDIVP--VGNDQKQHLELTRDLAQRIQKKFKLKLRL---PQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp TCCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCCCCCC---CEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred hCccEEE--ecccHHHHHHHHHHHHHHhhhhcccccCC---CeeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 4566555 99999999998888888774 222 2333421 123555567 899999999 898754
No 103
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=77.56 E-value=0.65 Score=56.01 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=39.2
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecCCCc--ccccccCC-ccchH
Q psy15414 820 VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK--KFKTRSGD-TVKLS 876 (1458)
Q Consensus 820 Vvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~~G~--KMSKR~Gn-vI~l~ 876 (1458)
-+|.||..|+..-..+++.+|+..| .+.|..+ +.+-+|. |||||.+| .|.+.
T Consensus 292 PvG~DQ~~hlel~Rdia~rfn~~~p---~~~~~~~--l~gLdG~~~KMSKS~~ns~I~l~ 346 (451)
T 3foc_A 292 ASGIEQDPYFRLARDLAPRMGHPKN---AYLLGKF--LPGLQGSGTKMSASDPNSAIYLT 346 (451)
T ss_dssp EECTTTHHHHHHHHHHTTTTTSCCC---EEEEECC--CCBTTBTTCCCCTTCGGGSCBTT
T ss_pred eeecchHHHHHHHHHHHHHhCCCCC---eeecCCc--ccCCCCCCCccCCCCCCCeeeec
Confidence 5699999999988999999997443 3455555 5555664 99999997 67763
No 104
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=71.06 E-value=1.4 Score=56.16 Aligned_cols=60 Identities=17% Similarity=0.056 Sum_probs=42.7
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCcceEEEEEeEEEecC-CC-cccccccC-CccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGE-DR-KKFKTRSG-DTVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~~~~~~~~~H~~fg~V~~~-~G-~KMSKR~G-nvI~l~D 877 (1458)
++.|.+. +|.||..|+..-..+++.+|... . ..+.+.. ++.+- +| +|||||.| |.|++.|
T Consensus 182 ~~ad~vp--vG~DQ~~~l~l~Rdla~r~n~~~-~-p~~l~~~--~l~gL~dG~~KMSKS~~~~~I~L~D 244 (690)
T 3p0j_A 182 LKADICQ--LGLDQRKVNMLAREYCDLIGRKL-K-PVILSHH--MLAGLKQGQAKMSKSDPDSAIFMED 244 (690)
T ss_dssp TTCSEEC--CBGGGHHHHHHHHHHHHHTTCCC-C-CEEEEBC--CCCCSSTTCSSCBTTBGGGSCBTTC
T ss_pred hCCCEEe--ccccHHHHHHHHHHHHHHhCCCC-C-ceEeecC--eeecCCCCCcCCCCCCCCCeeeccC
Confidence 3556444 89999999999999999998631 1 2334444 46665 77 49999998 6888743
No 105
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=70.85 E-value=1.2 Score=52.73 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=42.7
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCC------CCCcceEEEEEeEEEecCCC------------------ccccc
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGIL------NPNKTRMDFVGFGVVLGEDR------------------KKFKT 867 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~------~~~~~~~~H~~fg~V~~~~G------------------~KMSK 867 (1458)
++.+.+. +|.||..|+.--..+++.+|.. +.......|.. ++.+-+| +||||
T Consensus 179 ~~~~~vp--~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~--~l~gL~g~~~~~~~~~~~~~~~~~~~KMSK 254 (375)
T 2cyc_A 179 QGVTIAH--AGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHH--LLLGLQEPPKWPIESEEEFKEIKAQMKMSK 254 (375)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEEC--CCBCSSCCSSSSCCSHHHHHHHHHHHBGGG
T ss_pred hCCCeec--ccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccc--cccCCCCcccccccchhhhhhhhhhhcccC
Confidence 4566555 9999999999888888888851 00012234433 4666666 79999
Q ss_pred cc-CCccchHH
Q psy15414 868 RS-GDTVKLSE 877 (1458)
Q Consensus 868 R~-GnvI~l~D 877 (1458)
|. ||.|++.|
T Consensus 255 S~~~~~I~L~d 265 (375)
T 2cyc_A 255 SKPYSAVFIHD 265 (375)
T ss_dssp SCGGGSCBTTC
T ss_pred CCCCCeeccCC
Confidence 98 78898754
No 106
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=69.41 E-value=1.8 Score=50.48 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=29.4
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcC-CcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLG-HDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~G-y~V~r~~yInD~ 653 (1458)
||+--|||+|||||+..++ -.+.+ |+..| |+| ...|+||
T Consensus 5 y~G~~PTg~lHlGh~~g~l--~~~~~-lQ~~G~~~~--~~~IaD~ 44 (337)
T 2el7_A 5 LSGIQPSGEIHIGNYLGAI--KQWVA-IGEKLGRDA--FFCIVDY 44 (337)
T ss_dssp EEEECSCSCCBHHHHHTHH--HHHHH-HHHHHGGGE--EEEECGG
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHhcCCCCE--EEEEeCc
Confidence 7888999999999988764 22223 35568 988 6789997
No 107
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=67.09 E-value=2.6 Score=49.78 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=42.1
Q ss_pred CCeEEEEeeCCccccHHHHHHHHHHcCCCC-CCcceEEEEEeEEEecCCCcccccccC-CccchH
Q psy15414 814 ADWIVYVTDLGQGVHFRLLEECAKKAGILN-PNKTRMDFVGFGVVLGEDRKKFKTRSG-DTVKLS 876 (1458)
Q Consensus 814 ~d~iIyVvg~dq~~hf~~l~~il~alG~~~-~~~~~~~H~~fg~V~~~~G~KMSKR~G-nvI~l~ 876 (1458)
+...+=-+|.||..|+..-..+++.+|... ...+...|..+ +.+-+|.|||||.+ |.|.+.
T Consensus 207 y~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~--~pgldG~KmS~S~~ns~I~l~ 269 (372)
T 3a04_A 207 YRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKL--QPGLDGRKMSSSRPDSTIFLT 269 (372)
T ss_dssp CCCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECC--CBCTTSSBCCTTSGGGSCBTT
T ss_pred ccceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcc--cCCCCCCccCCCCCCcccccC
Confidence 444555689999999999999999887310 01233456655 55668999999984 467653
No 108
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=64.10 E-value=3.7 Score=48.86 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=29.0
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||.|||||++.++. +...+ ..|++| +.-|+||
T Consensus 43 y~G~~PTG~LHlG~~~~al~---~~~~~-q~g~~~--ii~I~D~ 80 (394)
T 2dlc_X 43 YWGTAPTGRPHCGYFVPMTK---LADFL-KAGCEV--TVLLADL 80 (394)
T ss_dssp EEEECCCSCCBGGGHHHHHH---HHHHH-HTTCEE--EEEECHH
T ss_pred EEEeCCCCCccHHHHHHHHH---HHHHH-HcCCcE--EEEEcCC
Confidence 77788899999999987764 33334 378876 6788996
No 109
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=63.39 E-value=3.4 Score=48.20 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=30.3
Q ss_pred EEeeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 608 VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 608 VE~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
.=||+.-|||.|||||+..++. -.+-|+..||+|.. .|+||
T Consensus 14 ~v~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~--~IaD~ 54 (340)
T 2g36_A 14 RILSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFY--FVADW 54 (340)
T ss_dssp EEEEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEE--EECHH
T ss_pred eEEEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEE--EEecc
Confidence 3489999999999999887642 22335667998764 58886
No 110
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=61.29 E-value=4 Score=47.27 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=26.3
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||+||+||+- ++. .+ +-|+..||+ ....|+||
T Consensus 36 y~G~~PTg~lHlG~l~-~l~--~~-~~lq~~g~~--~~~~i~D~ 73 (323)
T 2cyb_A 36 YVGYEPSGEIHLGHMM-TVQ--KL-MDLQEAGFE--IIVLLADI 73 (323)
T ss_dssp EEEECCCSCCBHHHHH-HHH--HH-HHHHHTTCE--EEEEECHH
T ss_pred EECcCCCCcchHHHHH-HHH--HH-HHHHHCCCc--EEEEECCc
Confidence 6777899999999973 332 22 333455887 46788887
No 111
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=61.28 E-value=1.1 Score=52.47 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=38.8
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcC--CC---CCCc-ce-EEEEEeEEEecC-CC-ccccccc---CCccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAG--IL---NPNK-TR-MDFVGFGVVLGE-DR-KKFKTRS---GDTVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG--~~---~~~~-~~-~~H~~fg~V~~~-~G-~KMSKR~---GnvI~l~D 877 (1458)
++.+.+. +|.||..|+.--..+++.+| |. +... .. +.+-...++.+- +| +|||||. ||.|++.|
T Consensus 142 ~~ad~vp--vG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 142 YGAHQVP--VGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp TTCSEEC--CCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC
T ss_pred cCCCEEE--eccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC
Confidence 3455444 89999999998888888776 22 1111 11 111001233333 56 6999999 78997743
No 112
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=60.92 E-value=1.6 Score=50.91 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=38.7
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcC--CCCCCc-ceEEEEE-eEEEecC-CC-cccccccC---CccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAG--ILNPNK-TRMDFVG-FGVVLGE-DR-KKFKTRSG---DTVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG--~~~~~~-~~~~H~~-fg~V~~~-~G-~KMSKR~G---nvI~l~D 877 (1458)
++.+.+. +|.||..|+..-..+++.+| |.+... ..-.+.. ..++.+- +| +|||||.+ |.|++.|
T Consensus 151 ~~ad~vp--vG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 151 YQTNQVP--VGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp TTCSEEC--CCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred hCceEEE--eccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 3455444 89999999999888888877 211111 1111111 0123333 66 49999997 6887743
No 113
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=60.60 E-value=4.8 Score=47.56 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=28.7
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||.|||||++.++. +...++ .||++ +..|+||
T Consensus 39 y~G~~PTG~lHlG~~~~~l~---~~~~~q-~g~~~--i~~I~D~ 76 (372)
T 1n3l_A 39 YWGTATTGKPHVAYFVPMSK---IADFLK-AGCEV--TILFADL 76 (372)
T ss_dssp EEEECCSSCCBGGGHHHHHH---HHHHHH-TTCEE--EEEECHH
T ss_pred EeCcCCCCcccHHHHHHHHH---HHHHHH-CCCCE--EEEEcCC
Confidence 66777999999999987765 444444 78875 5778886
No 114
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=59.10 E-value=12 Score=31.51 Aligned_cols=32 Identities=9% Similarity=0.167 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q psy15414 28 ATEDVLAAQLQNTKLKHRLAILQRAIAEEEKK 59 (1458)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (1458)
+..++++|+.||..||-|.+-|+..+++-..+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999887654
No 115
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=56.17 E-value=2.7 Score=49.87 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=39.0
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCC--CCCcceEEEEEe-----EEEecC-CC-ccccccc---CCccchHH
Q psy15414 812 EKADWIVYVTDLGQGVHFRLLEECAKKAGIL--NPNKTRMDFVGF-----GVVLGE-DR-KKFKTRS---GDTVKLSE 877 (1458)
Q Consensus 812 ~~~d~iIyVvg~dq~~hf~~l~~il~alG~~--~~~~~~~~H~~f-----g~V~~~-~G-~KMSKR~---GnvI~l~D 877 (1458)
++.|.+. +|.||..|+..-..+++.+|.. +... .+..+ .+|.+- +| +|||||. ||.|.+.|
T Consensus 170 ~~ad~vP--vG~DQ~~hleltRdia~rfn~~y~~~f~---~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 170 YGTDLVP--PGEDQKQHLELTRNLAERFNKKYNDIFT---IPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTCCEEC--CCSSCHHHHHHHHHHHHHHHHHTCSCCC---CCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred hCCCEEE--echhHHHHHHHHHHHHHHhCcccCCCcc---cchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 3556554 9999999999999999887731 1111 11111 122322 44 6999999 89998743
No 116
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=50.72 E-value=5.2 Score=46.38 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=28.2
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||.|||||+..++ --+.+ |+. ||++ ...|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l--~~~~~-lQ~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGAL--RQFVE-LQH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTH--HHHHH-HTT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHc-CCcE--EEEEeCc
Confidence 7888999999999988775 22222 333 8886 6789996
No 117
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=44.56 E-value=13 Score=43.97 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=28.9
Q ss_pred EeeCCccCCccccchhhHHHHHHHHHHHHHH-cCCcEEEEeecCCch
Q psy15414 609 DFSSPNIAKEMHVGHLRSTIIGDTISRLLEY-LGHDVVRLNHVGDWG 654 (1458)
Q Consensus 609 E~~SpNp~kplHIGHlRsaiIGD~LaRil~~-~Gy~V~r~~yInD~G 654 (1458)
=|++--|+|+|||||+-.+ .+.|.|+. .|..|.-. |+|+.
T Consensus 85 vysG~~PTG~lHLGh~v~~----~~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 85 IFIQKYPQKEVALEEYITL----EFARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp EEEEECCCSSCBGGGHHHH----HHHHHHHHHHCCEEEEE--ECHHH
T ss_pred EEeccCCCCCccHHHHHHH----HHHHHHHHhcCCeEEEE--eCchH
Confidence 3789999999999996544 23455655 47777766 89875
No 118
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=43.82 E-value=11 Score=44.28 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=28.5
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
|++--|+|++|+||.= |=.-.+.+...||+| .+.|.||
T Consensus 74 ~sG~~PTG~lHLGhyv----~~~~~~~lq~~~~~~--~~~IaD~ 111 (372)
T 3a04_A 74 LTGFMPSGKFHFGHKL----TVDQLIYLQKNGFKV--FVAIADA 111 (372)
T ss_dssp EEEECCCSCCBHHHHH----HHHHHHHHHHTTCEE--EEEECHH
T ss_pred EeCcCCCcHhHHHHHH----HHHHHHHHHhCCCeE--EEEEecc
Confidence 6888999999999964 323455666679988 4678887
No 119
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=43.70 E-value=12 Score=43.99 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=27.1
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||+||||| ..++. .+ +-|+..||+| ...|+||
T Consensus 39 y~G~~PTg~lHlG~-l~~l~--~~-~~lQ~~G~~~--~~~iaD~ 76 (364)
T 2cya_A 39 YIGYEPSGVAHIGW-LVWMY--KV-KDLVEAGVDF--SVLEATW 76 (364)
T ss_dssp EEEECCCSSCBTHH-HHHHH--HH-HHHHHTTCEE--EEEECHH
T ss_pred EeccCCCCCccHhH-HHHHH--HH-HHHHHCCCCE--EEEEeCc
Confidence 78889999999999 44432 23 3344569876 6788887
No 120
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=43.22 E-value=50 Score=25.66 Aligned_cols=43 Identities=26% Similarity=0.422 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15414 8 LKEFISKVNELSTKGFISESATEDVLAAQLQNTKLKHRLAILQRAIA 54 (1458)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1458)
+.+|++|++.|+..+++ .+++..|..|=+-|...++-|+.-++
T Consensus 2 laalkselqalkkegfs----peelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 2 LAALKSELQALKKEGFS----PEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999988875 46788888888888888877775554
No 121
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=43.12 E-value=7.6 Score=45.46 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=27.1
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHH--HHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRL--LEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRi--l~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||+|||||+..++ .++ |+.. |+| ...|+||
T Consensus 26 ysG~~PTG~lHLGn~~g~l-----~~~~~lQ~~-~~~--~~~IaD~ 63 (351)
T 1yi8_B 26 LTGDRPTGALHLGHLAGSL-----QNRVRLQDE-AEL--FVLLADV 63 (351)
T ss_dssp EEEECCSSCCBHHHHHHTH-----HHHHHHTSS-SEE--EEEECHH
T ss_pred EEeeCCCCCccHHHHHHHH-----HHHHHHHHh-CCe--EEEEecc
Confidence 7889999999999987653 344 4433 666 6788997
No 122
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=43.05 E-value=17 Score=43.55 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=28.2
Q ss_pred eeCCccCCc-cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 610 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 610 ~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
||+--|||+ |||||+= .+ -.+ +-|+..||++ +..|+||=
T Consensus 34 y~G~dPTg~sLHlGh~v-~l--~~l-~~lQ~~G~~~--i~lIgd~t 73 (419)
T 2ts1_A 34 YCGFDPTADSLHIGHLA-TI--LTM-RRFQQAGHRP--IALVGGAT 73 (419)
T ss_dssp EEEECCSSSSCBGGGHH-HH--HHH-HHHHHTTCEE--EEEECTTG
T ss_pred EEeeCCCCCCccHHHHH-HH--HHH-HHHHHCCCcE--EEEEcCce
Confidence 899999999 9999965 22 223 3445569876 56788873
No 123
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=42.86 E-value=10 Score=43.58 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=27.1
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||+||||| ..++. -.+.|+..||+| +.-|+||
T Consensus 32 y~G~~PTg~lHlGh-l~~l~---~~~~lQ~~g~~~--~~~i~D~ 69 (314)
T 2zp1_A 32 YIGFEPSGKIHLGH-YLQIK---KMIDLQNAGFDI--IILLADL 69 (314)
T ss_dssp EEEECCCSSCBHHH-HHHHH---HHHHHHHTTEEE--EEEECHH
T ss_pred EEccCCCCCcchhh-HHHHH---HHHHHHHCCCCE--EEEEecc
Confidence 78889999999999 55542 233444568765 6678886
No 124
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=40.72 E-value=17 Score=43.05 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=27.9
Q ss_pred eeCCccCCc-cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||+ |||||+= ++. .+.++ ...||++ ...|+||
T Consensus 68 y~G~dPTg~sLHlGhlv-~l~--~l~~l-Q~~G~~~--~~lIgD~ 106 (392)
T 1y42_X 68 YVGIDPTAPSLHVGHLL-PLM--PLFWM-YLEGYKA--FTLIGGS 106 (392)
T ss_dssp EEEECCCSSSCBGGGHH-HHH--HHHHH-HHHTCEE--EEEECTT
T ss_pred EEeecCCCCCccHHHHH-HHH--HHHHH-HHcCCcE--EEEEcCc
Confidence 899999999 9999976 322 34444 4559876 5678887
No 125
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=39.98 E-value=7.6 Score=44.90 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=28.0
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||.|||||+-.++.- +.++ +. ||++ ...|+||
T Consensus 7 ysG~~PTg~lHlG~~lg~l~~--~~~l-Q~-g~~~--~~~iaD~ 44 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIKQ--MVDA-QE-KSQM--FMFIANY 44 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHHH--HHHT-TT-TSCC--EEEECHH
T ss_pred EEccCCCccccHHHHHHHHHH--HHHH-hc-CCCE--EEEEecC
Confidence 788899999999998765432 3443 33 8887 5678887
No 126
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=39.67 E-value=18 Score=41.80 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.3
Q ss_pred eeCCccCCc-cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 610 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 610 ~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
||+--|||+ |||||+= ++ -. .+-|+..||++ ...|+||=
T Consensus 37 y~G~~PTg~slHlGh~l-~l--~~-~~~lQ~~g~~~--~~~i~D~~ 76 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PL--LC-LKRFQQAGHKP--VALVGGAT 76 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HH--HH-HHHHHHTTCEE--EEEECTTG
T ss_pred EEeecCCCCcccHHHHH-HH--HH-HHHHHHcCCcE--EEEEccce
Confidence 899999999 9999965 22 22 33445569876 67789973
No 127
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=39.20 E-value=18 Score=43.38 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=28.7
Q ss_pred EeeCCccCCc-cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 609 DFSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 609 E~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
=||+--|||+ |||||+= .+ -.+ +-|+..||+| +..|+||=
T Consensus 35 iy~G~dPTg~sLHlGh~v-~l--~~~-~~lQ~~G~~~--~~lIgd~t 75 (420)
T 1jil_A 35 LYCGADPTADSLHIGHLL-PF--LTL-RRFQEHGHRP--IVLIGGGT 75 (420)
T ss_dssp EEEEECCSSSSCBHHHHH-HH--HHH-HHHHHTTCEE--EEEECTTG
T ss_pred EEEeeCCCCCCccHHHHH-HH--HHH-HHHHHCCCcE--EEEEcCce
Confidence 3899999999 9999965 22 233 3445569876 56788873
No 128
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=38.81 E-value=8.6 Score=44.94 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=28.0
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||.|||||...++. -. +-|+. ||++ ...|+||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l~--~~-~~lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVMQ--SL-IELQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTGG--GH-HHHHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHHH--HH-HHHHh-CCcE--EEEEcCh
Confidence 78889999999999887651 11 12555 7875 6789997
No 129
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=32.57 E-value=23 Score=41.68 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=27.1
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||.+|+|| .++--...+-|..+|++| +..|+||
T Consensus 60 y~G~~PTg~lHlG~---gvl~~~~~~~lQ~~G~~~--~~lIaD~ 98 (373)
T 3vgj_A 60 YDGFEPSGRMHIAQ---GLLKSIIVNKLTSNGCTF--IFWIADW 98 (373)
T ss_dssp EEEECCCSSCBHHH---HHHHHHHHHHHHTTTCEE--EEEECHH
T ss_pred EeCCCCCCCceehh---hHHHHHHHHHHHHCCCcE--EEEEecc
Confidence 78999999999999 333332233445668865 4578887
No 130
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=31.73 E-value=22 Score=42.10 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=28.0
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHH-cCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEY-LGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~-~Gy~V~r~~yInD~ 653 (1458)
|++--|||.||+||.-.++ +.|.|+. .|++|+ .-|+||
T Consensus 77 ~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~--i~IaD~ 115 (392)
T 3jxe_A 77 YTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLY--IQITDD 115 (392)
T ss_dssp EEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEE--EEECHH
T ss_pred EeccCCCCchhHHHHHHHH----HHHHHHHhcCCceE--EEecch
Confidence 6788899999999976553 3455665 788765 458887
No 131
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=30.98 E-value=25 Score=44.71 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=27.9
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
||+--|||.+|||| .++-....+-|+..|++| ...|+||=
T Consensus 44 y~G~~PTg~lHLG~---~v~~~~~~~~lQ~~G~~~--~~lIaD~h 83 (690)
T 3p0j_A 44 YDGFEPSGRMHIAQ---GIFKAVNVNKCTAAGCEF--VFWVADWF 83 (690)
T ss_dssp EEEECCCSCCBHHH---HHHHHHHHHHHHHTTEEE--EEEECCGG
T ss_pred EeeecCCCcchhHh---hHHHHHHHHHHHHCCCcE--EEEEeeeE
Confidence 88999999999999 333222233455678876 56889983
No 132
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=30.35 E-value=22 Score=41.57 Aligned_cols=39 Identities=28% Similarity=0.522 Sum_probs=27.5
Q ss_pred eeCCccCCc-cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 610 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 610 ~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
||+--|||+ |||||+= ++. .+. -|+..||+| ...|+||=
T Consensus 50 y~G~~PTg~sLHLGhl~-~l~--~~~-~lQ~~G~~~--~~lIaD~h 89 (356)
T 2pid_A 50 YCGFDPTADSLHVGHLL-ALL--GLF-HLQRAGHNV--IALVGGAT 89 (356)
T ss_dssp EEEECCSSSSCBHHHHH-HHH--HHH-HHHHTTCEE--EEEECTTG
T ss_pred EEeecCCCCcccHHHHH-HHH--HHH-HHHHCCCcE--EEEEccce
Confidence 899999998 9999944 332 233 344568876 56788873
No 133
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=29.45 E-value=36 Score=39.68 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=26.6
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||.|||||.=.++ -.+.+ |...||+| ...|+||
T Consensus 44 y~G~~PTg~lHlGhyl~~l--~~~~~-lQ~~G~~~--~~~i~D~ 82 (348)
T 2j5b_A 44 YNGFEPSGRIHIAQALITV--MNTNN-MIECGGQM--IIYIADW 82 (348)
T ss_dssp EEEECCCSSCBHHHHHHHH--HHHHH-HHHTTEEE--EEEECHH
T ss_pred EeccCCCCCCchhHHHHHH--HHHHH-HHHcCCcE--EEEeccc
Confidence 9999999999999922121 23333 34558765 5788997
No 134
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=28.32 E-value=40 Score=40.42 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=27.7
Q ss_pred eeCCccCCc-cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCch
Q psy15414 610 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 654 (1458)
Q Consensus 610 ~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G 654 (1458)
||+--|||+ |||||+- ++. .+. -|+..||++ +..|+||=
T Consensus 36 y~G~dPTg~sLHLGhlv-~l~--~l~-~lQ~~G~~~--i~lIgD~t 75 (432)
T 2jan_A 36 YAGFDPTAPSLHAGHLV-PLL--TLR-RFQRAGHRP--IVLAGGAT 75 (432)
T ss_dssp EEEECCSSSSCBGGGHH-HHH--HHH-HHHHTTCEE--EEEECHHH
T ss_pred EEeeCCCCCCcCHHHHH-HHH--HHH-HHHHCCCcE--EEEEcCcE
Confidence 899999997 9999954 222 244 444569876 56789973
No 135
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=26.87 E-value=18 Score=42.04 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=26.5
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
|++--|+|++|+||.=+++ --+.+ |+. ||+| .+.|.||
T Consensus 10 ~sG~~PTG~lHLGhy~g~l--~~~~~-lQ~-~~~~--~~~iaD~ 47 (341)
T 3sz3_A 10 LSGVQPSGELSIGNYLGAL--RQWQQ-MQD-DYDC--QYCVVDL 47 (341)
T ss_dssp EEEECSSSCCBHHHHHHTG--GGHHH-HHH-HSEE--EEEECHH
T ss_pred EeCcCCCCcccHHHHHHHH--HHHHH-HHh-cCeE--EEEEecc
Confidence 7888999999999976554 22222 333 5765 5789997
No 136
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=25.54 E-value=39 Score=40.56 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=27.7
Q ss_pred eeCCccCCc-cccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCchh
Q psy15414 610 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 655 (1458)
Q Consensus 610 ~~SpNp~kp-lHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~G~ 655 (1458)
||+--|||+ |||||+= . --.+.+ |...||+| +..|+||=.
T Consensus 41 y~G~dPTg~sLHlGh~v-~--l~~l~~-lQ~~G~~~--i~lIgD~ta 81 (432)
T 1h3f_A 41 KLGADPTRPDLHLGHAV-V--LRKMRQ-FQELGHKV--VLIIGDFTG 81 (432)
T ss_dssp EEEECTTCCSCBHHHHH-H--HHHHHH-HHHTTCEE--EEEECCCC-
T ss_pred EEcccCCCCCCchhhHH-H--HHHHHH-HHHCCCCE--EEEEccceE
Confidence 799999997 9999965 2 123333 34569875 678999843
No 137
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=22.88 E-value=46 Score=39.47 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=27.1
Q ss_pred EeeCCccCC-ccccchhhHHHHHHHHHHHHHHc-CCcEEEEeecCCc
Q psy15414 609 DFSSPNIAK-EMHVGHLRSTIIGDTISRLLEYL-GHDVVRLNHVGDW 653 (1458)
Q Consensus 609 E~~SpNp~k-plHIGHlRsaiIGD~LaRil~~~-Gy~V~r~~yInD~ 653 (1458)
=||+--||| .|||||+= |=.+.|.|+.. |..|.-. |+|+
T Consensus 81 vy~G~~PTg~~lHLGh~v----~~~~~~~lQ~~~~~~v~i~--I~D~ 121 (395)
T 3i05_A 81 LYTGRGPSSESMHMGHLI----PFMFTKWLQDSFRVPLVIQ--MTDD 121 (395)
T ss_dssp EEEEECCCSSCCBGGGSH----HHHHHHHHHHHHTCCEEEE--ECHH
T ss_pred EEEeecCCCccchHHHHH----HHHHHHHHHHhcCCcEEEE--Ecch
Confidence 378899999 69999973 33344446655 6666654 8886
No 138
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=21.84 E-value=27 Score=41.36 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=26.4
Q ss_pred eeCCccCCccccchhhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGHlRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
|++--|||++|+||.=+++- . .+-|+. ||+| .+.|.||
T Consensus 39 ~sG~~PTG~lHLGhyvGal~-~--~~~LQ~-~~~~--~~~IaD~ 76 (388)
T 3prh_A 39 FSGIQPSGSVTLGNYIGAMK-Q--FVELQH-DYNS--YFCIVDQ 76 (388)
T ss_dssp EEEECCCSCCBHHHHHHTHH-H--HHHTTT-TSEE--EEEECHH
T ss_pred EEeeCCCCcchHHHHHHHHH-H--HHHHHc-cCcE--EEEEecc
Confidence 78999999999999754432 1 122333 8876 5678887
No 139
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=21.68 E-value=52 Score=38.95 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=27.4
Q ss_pred eeCCccC-CccccchhhHHHHHHHHHHHHHHc-CCcEEEEeecCCchh
Q psy15414 610 FSSPNIA-KEMHVGHLRSTIIGDTISRLLEYL-GHDVVRLNHVGDWGT 655 (1458)
Q Consensus 610 ~~SpNp~-kplHIGHlRsaiIGD~LaRil~~~-Gy~V~r~~yInD~G~ 655 (1458)
||+--|| +.|||||+=.+ ...|.|+.+ |..|.- -|+|++.
T Consensus 78 y~G~~PTa~~lHlGh~v~~----~~~~~lQ~~~~~~v~i--~I~D~~~ 119 (393)
T 3hv0_A 78 YTGRGPSSESLHVGHLVPF----LFTKYLQDTFKVPLVI--QLTDDEK 119 (393)
T ss_dssp EEEECCSSSSCBSTTHHHH----HHHHHHHHHHCCCEEE--EECHHHH
T ss_pred EeCCCCCCCCccHHHHHHH----HHHHHHHHhcCCCeEe--eccChHH
Confidence 7889999 68999995443 334446665 655444 7999863
No 140
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.61 E-value=1.4e+02 Score=26.59 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHhhhhhHHHHHHHHHH
Q psy15414 4 KELKLKEFISKVNELSTKGFISESATEDVLAAQLQNTKLKHRLAILQRAI 53 (1458)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1458)
+|..|+.|..++..|+. ....+..||..|+-.+..|+.-+
T Consensus 27 K~~~i~~LE~~v~~le~----------~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKE----------LHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999988874 23346789999998888877543
No 141
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=20.39 E-value=44 Score=39.34 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=26.2
Q ss_pred eeCCccCCccccch-hhHHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy15414 610 FSSPNIAKEMHVGH-LRSTIIGDTISRLLEYLGHDVVRLNHVGDW 653 (1458)
Q Consensus 610 ~~SpNp~kplHIGH-lRsaiIGD~LaRil~~~Gy~V~r~~yInD~ 653 (1458)
||+--|||.||||| += ++ -.+ +-|+..||+| ...|+||
T Consensus 37 y~G~~PTg~lHlG~yl~-~l--~~~-~~lQ~~G~~~--~~~iaD~ 75 (375)
T 2cyc_A 37 YIGFEISGYIHLGTGLM-AG--AKI-ADFQKAGIKT--RVFLADW 75 (375)
T ss_dssp EEEECCCSCCBHHHHHH-HH--HHH-HHHHHTTCBC--EEEECHH
T ss_pred EeCCCCCCCcCchHHHH-HH--HHH-HHHHHCCCcE--EEEecCc
Confidence 78889999999999 43 22 122 2344568875 5678887
Done!