RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15414
(1458 letters)
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase.
Length = 576
Score = 705 bits (1822), Expect = 0.0
Identities = 290/593 (48%), Positives = 395/593 (66%), Gaps = 30/593 (5%)
Query: 481 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG-EKKNPF 539
L+ +F ++++ P+ VA+ KFGD+QCN+AM L K KG KNP
Sbjct: 3 LAKLFEASLRLTVPDEPSVEPLVAACTNP---KFGDYQCNNAMGLWSKLKGKGTSFKNPR 59
Query: 540 DIAQSI-ASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQP- 597
+AQ+I ++ SE+ I+ VA PGFVNV LS + ++I+ ++V+G+
Sbjct: 60 AVAQAIVKNLPASEM---------IESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTW 110
Query: 598 -PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 656
PTL K R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LE+ G +V+R NHVGDWGTQ
Sbjct: 111 APTLPVK-RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQ 169
Query: 657 FGMLIAHLQDKFPDYLT-KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 715
FGMLI HL +KFP++ + I DLQ FYK +KKRFDEDE FK RA Q VV LQ DP+
Sbjct: 170 FGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPE 229
Query: 716 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 775
Y+ AW IC++SRR+F+K+Y RL V L E+GESFY ++ ++ LE KGL+ DG ++
Sbjct: 230 YRAAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARV 289
Query: 776 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEEC 835
++ E IP+ +VKSDGGF Y ++DLAA+ R+ EEKA+WI+YVTD+GQ HF ++ +
Sbjct: 290 IFVEGF-DIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKA 348
Query: 836 AKKAGIL-NPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 894
AK+AG L R++ VGFG+VLGED K+F+TRSG+ V+L +LLDE RS L ++
Sbjct: 349 AKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERG 408
Query: 895 RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 954
+ +E TP EL +A +AV YG +KYADL +NR +Y FSFD+MLD +GNTAVYLLYA+ RI
Sbjct: 409 KDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARI 468
Query: 955 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1014
SI R +G + ++L ++ + L+H E AL LL+ +V+ DL + LCEYL
Sbjct: 469 CSIIRKSGKDIDEL---KKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYL 525
Query: 1015 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1067
Y++S F++FY NC + E T RLLL EATA VM+KCF +L I
Sbjct: 526 YNLSEKFTKFYSNCKVNGSEEE-------TSRLLLCEATAIVMRKCFHLLGIT 571
Score = 436 bits (1124), Expect = e-138
Identities = 175/347 (50%), Positives = 236/347 (68%), Gaps = 19/347 (5%)
Query: 91 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG-EKKNPF 149
L+ +F ++++ P+ VA+ KFGD+QCN+AM L K KG KNP
Sbjct: 3 LAKLFEASLRLTVPDEPSVEPLVAACTNP---KFGDYQCNNAMGLWSKLKGKGTSFKNPR 59
Query: 150 DIAQSI-ASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQP- 207
+AQ+I ++ SE+ I+ VA PGFVNV LS + ++I+ ++V+G+
Sbjct: 60 AVAQAIVKNLPASEM---------IESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTW 110
Query: 208 -PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 266
PTL K R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LE+ G +V+R NHVGDWGTQ
Sbjct: 111 APTLPVK-RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQ 169
Query: 267 FGMLIAHLQDKFPDYLT-KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 325
FGMLI HL +KFP++ + I DLQ FYK +KKRFDEDE FK RA Q VV LQ DP+
Sbjct: 170 FGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPE 229
Query: 326 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 385
Y+ AW IC++SRR+F+K+Y RL V L E+GESFY ++ ++ LE KGL+ DG ++
Sbjct: 230 YRAAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARV 289
Query: 386 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 432
++ E IP+ +VKSDGGF Y ++DLAA+ R+ EEKA+WI+YVTD
Sbjct: 290 IFVEGF-DIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTD 335
Score = 436 bits (1124), Expect = e-138
Identities = 175/347 (50%), Positives = 236/347 (68%), Gaps = 19/347 (5%)
Query: 1108 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG-EKKNPF 1166
L+ +F ++++ P+ VA+ KFGD+QCN+AM L K KG KNP
Sbjct: 3 LAKLFEASLRLTVPDEPSVEPLVAACTNP---KFGDYQCNNAMGLWSKLKGKGTSFKNPR 59
Query: 1167 DIAQSI-ASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQP- 1224
+AQ+I ++ SE+ I+ VA PGFVNV LS + ++I+ ++V+G+
Sbjct: 60 AVAQAIVKNLPASEM---------IESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTW 110
Query: 1225 -PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 1283
PTL K R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LE+ G +V+R NHVGDWGTQ
Sbjct: 111 APTLPVK-RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQ 169
Query: 1284 FGMLIAHLQDKFPDYLT-KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 1342
FGMLI HL +KFP++ + I DLQ FYK +KKRFDEDE FK RA Q VV LQ DP+
Sbjct: 170 FGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPE 229
Query: 1343 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 1402
Y+ AW IC++SRR+F+K+Y RL V L E+GESFY ++ ++ LE KGL+ DG ++
Sbjct: 230 YRAAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARV 289
Query: 1403 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 1449
++ E IP+ +VKSDGGF Y ++DLAA+ R+ EEKA+WI+YVTD
Sbjct: 290 IFVEGF-DIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTD 335
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 464 bits (1197), Expect = e-148
Identities = 200/606 (33%), Positives = 309/606 (50%), Gaps = 45/606 (7%)
Query: 475 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 534
M+++ L + A+ A ++ + V + + GDF N A L K
Sbjct: 1 MNIKQLLKEKIAEALSAAGLDVEEIEILVEPPKDP---EHGDFATNIAFQLAKK-----L 52
Query: 535 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 594
KNP +IA+ IA +L T+ +I+K+E+A PGF+N FLS + E + +I+ G
Sbjct: 53 GKNPREIAEEIAE----KLDTDE----IIEKVEIAGPGFINFFLSPEFLAELLLEILEKG 104
Query: 595 VQ---PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 651
L K +V++++SS N +H+GHLR+ IIGD+++R+LE+LG+DV R N+V
Sbjct: 105 DDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVN 164
Query: 652 DWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKKRFDEDEIF-KKRAYQCVVAL 709
DWGTQ GML + + + L +P P L +Y + K +ED ++ A + V L
Sbjct: 165 DWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKL 224
Query: 710 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGL 766
+ D + + W D+S ++ DRL V GESFY +E++V LE+KGL
Sbjct: 225 ESGDEEAEL-WRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGL 283
Query: 767 LELDDGRKIM----WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 822
L DDG ++ + + + KSDG + Y T D+A + E D ++YV
Sbjct: 284 LYEDDGALVVDLLKFKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKF-ERGFDKLIYVLG 342
Query: 823 LGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEG 882
Q HF+ L+ + G P+K + G G+V G + K TR+G+ V L +LLDE
Sbjct: 343 ADQHGHFKQLKAVLELLG-YGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEA 401
Query: 883 LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 942
R+ +++++K E E + V ++YADLS +R+ DYVF +DK L GN
Sbjct: 402 GERAPEEMEEKEEKNE-------EIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGN 454
Query: 943 TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1002
TA Y+ YA+ RI SI R AG + DL + L +E L K LL +VL
Sbjct: 455 TAPYVQYAHARICSILRKAGEDELDL---STEADALLTELEERELVKKLLEFPEVLEEAA 511
Query: 1003 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1062
+L H L YLYD++ +F+ FY+ C + + E + RL L +AT +V+K D
Sbjct: 512 EELEPHRLANYLYDLAGSFNSFYNACPVLGAENE----ELRAARLALVKATRQVLKNGLD 567
Query: 1063 ILNIRT 1068
+L I
Sbjct: 568 LLGIEA 573
Score = 285 bits (732), Expect = 1e-83
Identities = 119/377 (31%), Positives = 191/377 (50%), Gaps = 32/377 (8%)
Query: 85 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 144
M+++ L + A+ A ++ + V + + GDF N A L K
Sbjct: 1 MNIKQLLKEKIAEALSAAGLDVEEIEILVEPPKDP---EHGDFATNIAFQLAKK-----L 52
Query: 145 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 204
KNP +IA+ IA +L T+ +I+K+E+A PGF+N FLS + E + +I+ G
Sbjct: 53 GKNPREIAEEIAE----KLDTDE----IIEKVEIAGPGFINFFLSPEFLAELLLEILEKG 104
Query: 205 VQ---PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 261
L K +V++++SS N +H+GHLR+ IIGD+++R+LE+LG+DV R N+V
Sbjct: 105 DDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVN 164
Query: 262 DWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKKRFDEDEIF-KKRAYQCVVAL 319
DWGTQ GML + + + L +P P L +Y + K +ED ++ A + V L
Sbjct: 165 DWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKL 224
Query: 320 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGL 376
+ D + + W D+S ++ DRL V GESFY +E++V LE+KGL
Sbjct: 225 ESGDEEAEL-WRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGL 283
Query: 377 LELDDGRKIM----WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV-- 430
L DDG ++ + + + KSDG + Y T D+A + E D ++YV
Sbjct: 284 LYEDDGALVVDLLKFKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKF-ERGFDKLIYVLG 342
Query: 431 TDHRSYHQVLQAIAEEE 447
D + + L+A+ E
Sbjct: 343 ADQHGHFKQLKAVLELL 359
Score = 283 bits (726), Expect = 1e-82
Identities = 116/369 (31%), Positives = 185/369 (50%), Gaps = 30/369 (8%)
Query: 1102 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 1161
M+++ L + A+ A ++ + V + + GDF N A L K
Sbjct: 1 MNIKQLLKEKIAEALSAAGLDVEEIEILVEPPKDP---EHGDFATNIAFQLAKK-----L 52
Query: 1162 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 1221
KNP +IA+ IA +L T+ +I+K+E+A PGF+N FLS + E + +I+ G
Sbjct: 53 GKNPREIAEEIAE----KLDTDE----IIEKVEIAGPGFINFFLSPEFLAELLLEILEKG 104
Query: 1222 VQ---PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 1278
L K +V++++SS N +H+GHLR+ IIGD+++R+LE+LG+DV R N+V
Sbjct: 105 DDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVN 164
Query: 1279 DWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKKRFDEDEIF-KKRAYQCVVAL 1336
DWGTQ GML + + + L +P P L +Y + K +ED ++ A + V L
Sbjct: 165 DWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKL 224
Query: 1337 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGL 1393
+ D + + W D+S ++ DRL V GESFY +E++V LE+KGL
Sbjct: 225 ESGDEEAEL-WRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGL 283
Query: 1394 LELDDGRKIM----WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 1449
L DDG ++ + + + KSDG + Y T D+A + E D ++YV
Sbjct: 284 LYEDDGALVVDLLKFKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKF-ERGFDKLIYVLG 342
Query: 1450 HRSYHQVLQ 1458
+ Q
Sbjct: 343 ADQHGHFKQ 351
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 439 bits (1133), Expect = e-140
Identities = 165/610 (27%), Positives = 258/610 (42%), Gaps = 125/610 (20%)
Query: 475 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 534
M +++ L++ A++ + + GD+ N AM L K K
Sbjct: 3 MDIKELLAEALAAALEAGGLPELPAVLIERPKDPE----HGDYATNVAMQLAKKLK---- 54
Query: 535 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 594
KNP +IA+ I + I+K+E+A PGF+N FL E + I+ G
Sbjct: 55 -KNPREIAEEIV--------------EAIEKVEIAGPGFINFFLDPAALAELVLAILEAG 99
Query: 595 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 652
+ + K +V+V++ S N +HVGHLRS +IGD ++R+LE+ G+DV R +V D
Sbjct: 100 ERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVND 159
Query: 653 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 712
GTQ GMLIA
Sbjct: 160 AGTQIGMLIAS------------------------------------------------- 170
Query: 713 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLEL 769
+ W D+S + ++ DRL V E +Y ++++V L++KGLL
Sbjct: 171 ---LELLWRKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLL-- 225
Query: 770 DDGRKIMWGEDRGSI-----------PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 818
+ E G++ ++KSDG +TY T D+A + E D ++
Sbjct: 226 -------YVESDGALWVRLTEFGDDKDRVLIKSDGTYTYFTRDIAYHLYKFER--FDRVI 276
Query: 819 YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSEL 878
YV HF+ L+ K G + G+V G + K TR+G+ V L +L
Sbjct: 277 YVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDL 336
Query: 879 LDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 938
LDE + R+ + +++K E +AV ++Y DLS +R+ D F D L
Sbjct: 337 LDEAVGRARELIEEK------------EIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALS 384
Query: 939 DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 998
GN Y+ YA+ RI SI R A DL L E+E L K L +V+
Sbjct: 385 FEGNNPPYVQYAHARICSILRKAAEAGIDL------LLALLTEEEEKELIKKLAEFPEVV 438
Query: 999 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1058
+L H + YLY+++ AF FY+ +++ E + RL L +ATA+V+K
Sbjct: 439 ESAAEELEPHRIANYLYELAGAFHSFYNRVLLKDEEEE-----LRNARLALVKATAQVLK 493
Query: 1059 KCFDILNIRT 1068
D+L I
Sbjct: 494 NGLDLLGISA 503
Score = 257 bits (658), Expect = 2e-74
Identities = 96/379 (25%), Positives = 155/379 (40%), Gaps = 104/379 (27%)
Query: 85 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 144
M +++ L++ A++ + + GD+ N AM L K K
Sbjct: 3 MDIKELLAEALAAALEAGGLPELPAVLIERPKDPE----HGDYATNVAMQLAKKLK---- 54
Query: 145 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 204
KNP +IA+ I + I+K+E+A PGF+N FL E + I+ G
Sbjct: 55 -KNPREIAEEIV--------------EAIEKVEIAGPGFINFFLDPAALAELVLAILEAG 99
Query: 205 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 262
+ + K +V+V++ S N +HVGHLRS +IGD ++R+LE+ G+DV R +V D
Sbjct: 100 ERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVND 159
Query: 263 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 322
GTQ GMLIA
Sbjct: 160 AGTQIGMLIAS------------------------------------------------- 170
Query: 323 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLEL 379
+ W D+S + ++ DRL V E +Y ++++V L++KGLL
Sbjct: 171 ---LELLWRKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLL-- 225
Query: 380 DDGRKIMWGEDRGSI-----------PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 428
+ E G++ ++KSDG +TY T D+A + E D ++
Sbjct: 226 -------YVESDGALWVRLTEFGDDKDRVLIKSDGTYTYFTRDIAYHLYKFER--FDRVI 276
Query: 429 YVT--DHRSYHQVLQAIAE 445
YV DH + + L+A +
Sbjct: 277 YVVGADHHGHFKRLKAALK 295
Score = 251 bits (644), Expect = 1e-72
Identities = 93/371 (25%), Positives = 148/371 (39%), Gaps = 103/371 (27%)
Query: 1102 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 1161
M +++ L++ A++ + + GD+ N AM L K K
Sbjct: 3 MDIKELLAEALAAALEAGGLPELPAVLIERPKDPE----HGDYATNVAMQLAKKLK---- 54
Query: 1162 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 1221
KNP +IA+ I + I+K+E+A PGF+N FL E + I+ G
Sbjct: 55 -KNPREIAEEIV--------------EAIEKVEIAGPGFINFFLDPAALAELVLAILEAG 99
Query: 1222 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 1279
+ + K +V+V++ S N +HVGHLRS +IGD ++R+LE+ G+DV R +V D
Sbjct: 100 ERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVND 159
Query: 1280 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 1339
GTQ GMLIA
Sbjct: 160 AGTQIGMLIAS------------------------------------------------- 170
Query: 1340 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLEL 1396
+ W D+S + ++ DRL V E +Y ++++V L++KGLL
Sbjct: 171 ---LELLWRKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLL-- 225
Query: 1397 DDGRKIMWGEDRGSI-----------PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 1445
+ E G++ ++KSDG +TY T D+A + E D ++
Sbjct: 226 -------YVESDGALWVRLTEFGDDKDRVLIKSDGTYTYFTRDIAYHLYKFER--FDRVI 276
Query: 1446 YVTDHR-SYHQ 1455
YV H
Sbjct: 277 YVVGADHHGHF 287
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only arginyl tRNA
synthetase.
Length = 345
Score = 389 bits (1002), Expect = e-124
Identities = 151/353 (42%), Positives = 208/353 (58%), Gaps = 13/353 (3%)
Query: 586 QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 645
+ I+ G L + +V+V+FSSPN AK +HVGHLRSTIIGD +SRLLE+LG+DVV
Sbjct: 1 IVTKILAQGGLGSALLENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVV 60
Query: 646 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 705
R N+VGDWGTQFGMLIA L+ + LT PI DL+ Y+ KK + +EIF K A
Sbjct: 61 RENYVGDWGTQFGMLIASLEAAAKEELTVPMPIQDLEDGYRGIKKDYIAEEIFAKEARNA 120
Query: 706 VVALQRFDPDYKKAW-EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 764
VV LQ D ++++ W +I D ++ KIYD +VTL E GES Y+ M V L+
Sbjct: 121 VVLLQSGDEEFREMWVLLIFDHIKQSLNKIYDDFDVTLHE-GESVYKGRMNDAVKDLKDN 179
Query: 765 GLLELDDGRKIM----WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 820
GL+ +DG + +G+D ++KSDGG Y T+DLA ++R+E+ D I+YV
Sbjct: 180 GLVYENDGALWLFLTEFGDD---KDRVVIKSDGGALYITTDLAYAKERLEQRGFDLIIYV 236
Query: 821 TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLD 880
Q H + L A G +P + +GFGVVLG+D K+ TR+G+ V L +LLD
Sbjct: 237 LGADQHGHIQRLFAAAAALG-YDPESVEVLHIGFGVVLGKDGKRMSTRAGNVVTLDDLLD 295
Query: 881 EGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 933
E L R++D + +LT EL A+ +YADLS NR+ DY+F
Sbjct: 296 EALERAMDIKEKN---RDLTADELEAVATAIGVDAARYADLSSNRDTDYIFDL 345
Score = 299 bits (768), Expect = 2e-91
Identities = 114/256 (44%), Positives = 155/256 (60%), Gaps = 11/256 (4%)
Query: 196 QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 255
+ I+ G L + +V+V+FSSPN AK +HVGHLRSTIIGD +SRLLE+LG+DVV
Sbjct: 1 IVTKILAQGGLGSALLENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVV 60
Query: 256 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 315
R N+VGDWGTQFGMLIA L+ + LT PI DL+ Y+ KK + +EIF K A
Sbjct: 61 RENYVGDWGTQFGMLIASLEAAAKEELTVPMPIQDLEDGYRGIKKDYIAEEIFAKEARNA 120
Query: 316 VVALQRFDPDYKKAW-EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 374
VV LQ D ++++ W +I D ++ KIYD +VTL E GES Y+ M V L+
Sbjct: 121 VVLLQSGDEEFREMWVLLIFDHIKQSLNKIYDDFDVTLHE-GESVYKGRMNDAVKDLKDN 179
Query: 375 GLLELDDGRKIM----WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 430
GL+ +DG + +G+D ++KSDGG Y T+DLA ++R+E+ D I+YV
Sbjct: 180 GLVYENDGALWLFLTEFGDD---KDRVVIKSDGGALYITTDLAYAKERLEQRGFDLIIYV 236
Query: 431 --TDHRSYHQVLQAIA 444
D + Q L A A
Sbjct: 237 LGADQHGHIQRLFAAA 252
Score = 295 bits (758), Expect = 4e-90
Identities = 111/250 (44%), Positives = 152/250 (60%), Gaps = 11/250 (4%)
Query: 1213 QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 1272
+ I+ G L + +V+V+FSSPN AK +HVGHLRSTIIGD +SRLLE+LG+DVV
Sbjct: 1 IVTKILAQGGLGSALLENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVV 60
Query: 1273 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 1332
R N+VGDWGTQFGMLIA L+ + LT PI DL+ Y+ KK + +EIF K A
Sbjct: 61 RENYVGDWGTQFGMLIASLEAAAKEELTVPMPIQDLEDGYRGIKKDYIAEEIFAKEARNA 120
Query: 1333 VVALQRFDPDYKKAW-EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 1391
VV LQ D ++++ W +I D ++ KIYD +VTL E GES Y+ M V L+
Sbjct: 121 VVLLQSGDEEFREMWVLLIFDHIKQSLNKIYDDFDVTLHE-GESVYKGRMNDAVKDLKDN 179
Query: 1392 GLLELDDGRKIM----WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 1447
GL+ +DG + +G+D ++KSDGG Y T+DLA ++R+E+ D I+YV
Sbjct: 180 GLVYENDGALWLFLTEFGDD---KDRVVIKSDGGALYITTDLAYAKERLEQRGFDLIIYV 236
Query: 1448 --TDHRSYHQ 1455
D + Q
Sbjct: 237 LGADQHGHIQ 246
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 377 bits (970), Expect = e-116
Identities = 180/569 (31%), Positives = 280/569 (49%), Gaps = 52/569 (9%)
Query: 513 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 572
+FGD+ N A L K+ K KNP IA+ E+ ++I+K+E A P
Sbjct: 33 EFGDYASNIAFPLAKVLK-----KNPRAIAE--------EIVLKLKTGEIIEKVEAAGP- 78
Query: 573 FVNVFLSRVYAGEQIKDIIVN-----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRST 627
F+N FLS E++ I+ G + K +++++FSS N A +H+GHLR+
Sbjct: 79 FINFFLSPQKLLERLIQKILTQKEDYGSKKL---KNKKIIIEFSSANPAGPLHIGHLRNA 135
Query: 628 IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQAFY 685
IIGD+++R+LE+LG+DV+R +V DWG QFG+L ++ + L + P L+ FY
Sbjct: 136 IIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFY 195
Query: 686 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 745
E KR +E+E ++ A + V L+ D + K W+ + + S ++ RLN+
Sbjct: 196 VEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSF 255
Query: 746 ---GESFYQKHMEQLVPYLEKKGLLELDDGRKI---MWGEDRGSIPMTIVKSDGGFTYDT 799
GES + +++ L++KGL+ D + ++G+ + KSDG + Y T
Sbjct: 256 VWEGESVKNGMVPKVLEDLKEKGLVVEDGALWLDLTLFGDKDK--DRVLQKSDGTYLYLT 313
Query: 800 SDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLG 859
D+A ++ E D ++YV +H +K G K + + FG+V
Sbjct: 314 RDIAYHLDKL-ERGFDKMIYVWGSDHHLHIAQFFAILEKLGF--YKKKELIHLNFGMVPL 370
Query: 860 EDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYA 919
K + G+ + L LLDE +R+ + + KN E + AV G ++Y
Sbjct: 371 GSMKTRR---GNVISLDNLLDEASKRAGNVITIKN------DLEEEDVADAVGIGAVRYF 421
Query: 920 DLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSL 979
DLS NR YVF +D ML GNTA Y+ YA+ RI SI R A I+ E L + SL
Sbjct: 422 DLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKL----IADDFSL 477
Query: 980 EHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKI 1039
EKE L K LL+ DVL +L H L YLY++++ FS FY C ++ + E
Sbjct: 478 LEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLDAENENLA 537
Query: 1040 KTVHTGRLLLAEATAKVMKKCFDILNIRT 1068
RL L +AT + +K +L I
Sbjct: 538 AA----RLALLKATRQTLKNGLQLLGIEP 562
Score = 229 bits (586), Expect = 3e-64
Identities = 104/338 (30%), Positives = 173/338 (51%), Gaps = 35/338 (10%)
Query: 123 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 182
+FGD+ N A L K+ K KNP IA+ E+ ++I+K+E A P
Sbjct: 33 EFGDYASNIAFPLAKVLK-----KNPRAIAE--------EIVLKLKTGEIIEKVEAAGP- 78
Query: 183 FVNVFLSRVYAGEQIKDIIVN-----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRST 237
F+N FLS E++ I+ G + K +++++FSS N A +H+GHLR+
Sbjct: 79 FINFFLSPQKLLERLIQKILTQKEDYGSKKL---KNKKIIIEFSSANPAGPLHIGHLRNA 135
Query: 238 IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQAFY 295
IIGD+++R+LE+LG+DV+R +V DWG QFG+L ++ + L + P L+ FY
Sbjct: 136 IIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFY 195
Query: 296 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 355
E KR +E+E ++ A + V L+ D + K W+ + + S ++ RLN+
Sbjct: 196 VEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSF 255
Query: 356 ---GESFYQKHMEQLVPYLEKKGLLELDDGRKI---MWGEDRGSIPMTIVKSDGGFTYDT 409
GES + +++ L++KGL+ D + ++G+ + KSDG + Y T
Sbjct: 256 VWEGESVKNGMVPKVLEDLKEKGLVVEDGALWLDLTLFGDKDK--DRVLQKSDGTYLYLT 313
Query: 410 SDLAAIRQRIEEEKADWIVYV--TDHRSYHQVLQAIAE 445
D+A ++ E D ++YV +DH + AI E
Sbjct: 314 RDIAYHLDKL-ERGFDKMIYVWGSDHHLHIAQFFAILE 350
Score = 226 bits (578), Expect = 2e-63
Identities = 101/329 (30%), Positives = 170/329 (51%), Gaps = 35/329 (10%)
Query: 1140 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 1199
+FGD+ N A L K+ K KNP IA+ E+ ++I+K+E A P
Sbjct: 33 EFGDYASNIAFPLAKVLK-----KNPRAIAE--------EIVLKLKTGEIIEKVEAAGP- 78
Query: 1200 FVNVFLSRVYAGEQIKDIIVN-----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRST 1254
F+N FLS E++ I+ G + K +++++FSS N A +H+GHLR+
Sbjct: 79 FINFFLSPQKLLERLIQKILTQKEDYGSKKL---KNKKIIIEFSSANPAGPLHIGHLRNA 135
Query: 1255 IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQAFY 1312
IIGD+++R+LE+LG+DV+R +V DWG QFG+L ++ + L + P L+ FY
Sbjct: 136 IIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFY 195
Query: 1313 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 1372
E KR +E+E ++ A + V L+ D + K W+ + + S ++ RLN+
Sbjct: 196 VEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSF 255
Query: 1373 ---GESFYQKHMEQLVPYLEKKGLLELDDGRKI---MWGEDRGSIPMTIVKSDGGFTYDT 1426
GES + +++ L++KGL+ D + ++G+ + KSDG + Y T
Sbjct: 256 VWEGESVKNGMVPKVLEDLKEKGLVVEDGALWLDLTLFGDKDK--DRVLQKSDGTYLYLT 313
Query: 1427 SDLAAIRQRIEEEKADWIVYV--TDHRSY 1453
D+A ++ E D ++YV +DH +
Sbjct: 314 RDIAYHLDKL-ERGFDKMIYVWGSDHHLH 341
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed.
Length = 562
Score = 277 bits (710), Expect = 8e-81
Identities = 164/561 (29%), Positives = 263/561 (46%), Gaps = 44/561 (7%)
Query: 514 FGD--FQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 571
FGD F C +L K +K K P IA+ +A ++ T K+E P
Sbjct: 36 FGDAAFPC---FSLAKQYK-----KAPAIIAKEVAEKLSDPFFT---------KVEAVGP 78
Query: 572 GFVNVFLSR-VYAGEQIKDIIV--NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 628
+VNVF +R + +K I+ + V++D+SSPNIAK +GHLRST+
Sbjct: 79 -YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTM 137
Query: 629 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 688
IG+ + + E G++VV +N++GDWGTQFG LI + + + K PI +L Y +
Sbjct: 138 IGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQF 197
Query: 689 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGE 747
+ +DE ++ L+ D + + W S ++F +IY+ L V T +GE
Sbjct: 198 HEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGE 257
Query: 748 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQ 807
+FY ME + LE+ LLE +G ++ E+ G P I KSDG Y T DL A
Sbjct: 258 AFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATRDLTAALY 317
Query: 808 RIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKT 867
R D +YV Q +HF KK G M+ V FG++L +D KK T
Sbjct: 318 RQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGY--TWVDGMEHVPFGLIL-KDGKKMST 374
Query: 868 RSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL 927
R G V L E+L+E + + +++KN + + + E + V G + + DL + R
Sbjct: 375 RKGRVVLLEEVLEEAIELAKQNIEEKNPNLK----QKEEVAKQVGVGAVIFHDLKNERMH 430
Query: 928 DYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFAL 987
+ FS + ML G T Y+ Y + R SI R V ++ +L+ + +++
Sbjct: 431 NIEFSLENMLKFEGETGPYVQYTHARACSILRKES-------VEFETCTFALKDDYSWSV 483
Query: 988 AKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRL 1047
K L + V+ + +Y+ D++ +F+++Y N +E+ AE RL
Sbjct: 484 VKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRILEESAE------KDSRL 537
Query: 1048 LLAEATAKVMKKCFDILNIRT 1068
L A V+K+ +L +
Sbjct: 538 ALVYAVTVVLKEGLRLLGVEA 558
Score = 184 bits (470), Expect = 2e-49
Identities = 102/313 (32%), Positives = 153/313 (48%), Gaps = 24/313 (7%)
Query: 124 FGD--FQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 181
FGD F C +L K +K K P IA+ +A ++ T K+E P
Sbjct: 36 FGDAAFPC---FSLAKQYK-----KAPAIIAKEVAEKLSDPFFT---------KVEAVGP 78
Query: 182 GFVNVFLSR-VYAGEQIKDIIV--NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 238
+VNVF +R + +K I+ + V++D+SSPNIAK +GHLRST+
Sbjct: 79 -YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTM 137
Query: 239 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 298
IG+ + + E G++VV +N++GDWGTQFG LI + + + K PI +L Y +
Sbjct: 138 IGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQF 197
Query: 299 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGE 357
+ +DE ++ L+ D + + W S ++F +IY+ L V T +GE
Sbjct: 198 HEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGE 257
Query: 358 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQ 417
+FY ME + LE+ LLE +G ++ E+ G P I KSDG Y T DL A
Sbjct: 258 AFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATRDLTAALY 317
Query: 418 RIEEEKADWIVYV 430
R D +YV
Sbjct: 318 RQNTFGFDKALYV 330
Score = 184 bits (470), Expect = 2e-49
Identities = 102/313 (32%), Positives = 153/313 (48%), Gaps = 24/313 (7%)
Query: 1141 FGD--FQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 1198
FGD F C +L K +K K P IA+ +A ++ T K+E P
Sbjct: 36 FGDAAFPC---FSLAKQYK-----KAPAIIAKEVAEKLSDPFFT---------KVEAVGP 78
Query: 1199 GFVNVFLSR-VYAGEQIKDIIV--NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 1255
+VNVF +R + +K I+ + V++D+SSPNIAK +GHLRST+
Sbjct: 79 -YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTM 137
Query: 1256 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 1315
IG+ + + E G++VV +N++GDWGTQFG LI + + + K PI +L Y +
Sbjct: 138 IGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQF 197
Query: 1316 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGE 1374
+ +DE ++ L+ D + + W S ++F +IY+ L V T +GE
Sbjct: 198 HEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGE 257
Query: 1375 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQ 1434
+FY ME + LE+ LLE +G ++ E+ G P I KSDG Y T DL A
Sbjct: 258 AFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATRDLTAALY 317
Query: 1435 RIEEEKADWIVYV 1447
R D +YV
Sbjct: 318 RQNTFGFDKALYV 330
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 231 bits (591), Expect = 3e-69
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 58/268 (21%)
Query: 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 664
++LV+F S N +HVGHLR+ IIGD+++R+LE+LG+DV R ++ DWG Q G+LI L
Sbjct: 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL 60
Query: 665 QDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 724
+ W +
Sbjct: 61 EK-----------------------------------------------------WRKLV 67
Query: 725 DVSRRDFQKIYDRLNVTL-TERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG- 782
+ S + + Y RL+V GES Y M ++V LE+ GLL +DG + + G
Sbjct: 68 EESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD 127
Query: 783 SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGIL 842
+V+SDG +TY T D+A + E AD I+YV HF+ L + G
Sbjct: 128 DKDRVLVRSDGTYTYFTRDIAYHLDKF-ERGADKIIYVVGADHHGHFKRLFAALELLGY- 185
Query: 843 NPNKTRMDFVGFGVVLGEDRKKFKTRSG 870
+++ + +G+V K TR+G
Sbjct: 186 -DEAKKLEHLLYGMVNLPKEGKMSTRAG 212
Score = 200 bits (511), Expect = 2e-58
Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 58/235 (24%)
Query: 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 274
++LV+F S N +HVGHLR+ IIGD+++R+LE+LG+DV R ++ DWG Q G+LI L
Sbjct: 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL 60
Query: 275 QDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 334
+ W +
Sbjct: 61 EK-----------------------------------------------------WRKLV 67
Query: 335 DVSRRDFQKIYDRLNVTL-TERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG- 392
+ S + + Y RL+V GES Y M ++V LE+ GLL +DG + + G
Sbjct: 68 EESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD 127
Query: 393 SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT--DHRSYHQVLQAIAE 445
+V+SDG +TY T D+A + E AD I+YV DH + + L A E
Sbjct: 128 DKDRVLVRSDGTYTYFTRDIAYHLDKF-ERGADKIIYVVGADHHGHFKRLFAALE 181
Score = 195 bits (497), Expect = 1e-56
Identities = 69/230 (30%), Positives = 103/230 (44%), Gaps = 58/230 (25%)
Query: 1232 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 1291
++LV+F S N +HVGHLR+ IIGD+++R+LE+LG+DV R ++ DWG Q G+LI L
Sbjct: 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL 60
Query: 1292 QDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 1351
+ W +
Sbjct: 61 EK-----------------------------------------------------WRKLV 67
Query: 1352 DVSRRDFQKIYDRLNVTL-TERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG- 1409
+ S + + Y RL+V GES Y M ++V LE+ GLL +DG + + G
Sbjct: 68 EESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD 127
Query: 1410 SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT--DHRSYHQVL 1457
+V+SDG +TY T D+A + E AD I+YV DH + + L
Sbjct: 128 DKDRVLVRSDGTYTYFTRDIAYHLDKF-ERGADKIIYVVGADHHGHFKRL 176
>gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA
synthetases. This domain is found in arginyl tRNA
synthetases (ArgRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ArgRS catalyzes the transfer
of arginine to the 3'-end of its tRNA.
Length = 156
Score = 123 bits (312), Expect = 1e-32
Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 910 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLR 969
V G +KY DLS+ R DY F +++ML G+T YL YA+ R+ SI R AG E
Sbjct: 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEA 61
Query: 970 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1029
A S L E L L + +V+ L H + YL+D++ AFS+FY+ C
Sbjct: 62 DADLSL---LPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACP 118
Query: 1030 CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066
AE +++ RL L A +V+ D+L I
Sbjct: 119 V--LGAEEELR---NARLALVAAARQVLANGLDLLGI 150
>gnl|CDD|218729 pfam05746, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain in Arginyl
and glycyl tRNA synthetase. This domain is known as the
DALR domain after characteristic conserved amino acids.
Length = 117
Score = 109 bits (274), Expect = 7e-28
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 947 LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1006
L YA+ RI SI R AG +L + L E+E L K LL+ +VL +L
Sbjct: 1 LQYAHARICSILRKAGELGINLDI----DADLLTEEEEKELLKALLQFPEVLEEAAEELE 56
Query: 1007 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066
H L YLY++++AF FY+NC +++D E RL L +A +V+K D+L I
Sbjct: 57 PHRLANYLYELASAFHSFYNNCRVLDEDNE-----ERNARLALLKAVRQVLKNGLDLLGI 111
Query: 1067 RT 1068
Sbjct: 112 EA 113
>gnl|CDD|214846 smart00836, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain of Arginyl
tRNA synthetase. This domain is known as the DALR domain
after characteristic conserved amino acids.
Length = 122
Score = 108 bits (271), Expect = 2e-27
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 947 LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1006
+ YA+ RI SI R AG E L A + L +E+AL L R +VL L
Sbjct: 1 VQYAHARICSILRKAGEAGETLPDIADADLSLLTEPEEWALLLKLARFPEVLEAAAEQLE 60
Query: 1007 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066
H L YLYD++ AF FY+ + ++ + RL L +A +V+ +L I
Sbjct: 61 PHRLANYLYDLAAAFHSFYNRVRVLGEENPE----LRKARLALLKAVRQVLANGLRLLGI 116
>gnl|CDD|217589 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal
domain. This domain is found at the amino terminus of
Arginyl tRNA synthetase, also called additional domain 1
(Add-1). It is about 140 residues long and it has been
suggested that this domain will be involved in tRNA
recognition.
Length = 84
Score = 72.7 bits (179), Expect = 2e-15
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 89 DYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 148
D L A+ A +L + + + +FGD+ N AM L K K KNP
Sbjct: 1 DLLKKAIAEALAKAGLDLEVIDPVIETPKDP---EFGDYATNVAMKLAKKLK-----KNP 52
Query: 149 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 188
+IA+ IA +L + I+K+EVA PGF+N FL
Sbjct: 53 REIAEEIAE----KLPKSDL----IEKVEVAGPGFINFFL 84
Score = 72.7 bits (179), Expect = 2e-15
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 479 DYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 538
D L A+ A +L + + + +FGD+ N AM L K K KNP
Sbjct: 1 DLLKKAIAEALAKAGLDLEVIDPVIETPKDP---EFGDYATNVAMKLAKKLK-----KNP 52
Query: 539 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 578
+IA+ IA +L + I+K+EVA PGF+N FL
Sbjct: 53 REIAEEIAE----KLPKSDL----IEKVEVAGPGFINFFL 84
Score = 72.7 bits (179), Expect = 2e-15
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 1106 DYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 1165
D L A+ A +L + + + +FGD+ N AM L K K KNP
Sbjct: 1 DLLKKAIAEALAKAGLDLEVIDPVIETPKDP---EFGDYATNVAMKLAKKLK-----KNP 52
Query: 1166 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 1205
+IA+ IA +L + I+K+EVA PGF+N FL
Sbjct: 53 REIAEEIAE----KLPKSDL----IEKVEVAGPGFINFFL 84
>gnl|CDD|214975 smart01016, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal
dom. This domain is found at the amino terminus of
Arginyl tRNA synthetase, also called additional domain 1
(Add-1). It is about 140 residues long and it has been
suggested that this domain will be involved in tRNA
recognition.
Length = 85
Score = 67.6 bits (166), Expect = 9e-14
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 89 DYLSDVFTHAVQVAFPELGDKT-ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 147
D L + A++ A G+ ++ + GD+ N A L K K KN
Sbjct: 1 DLLKEAIAEALKKALGVEGEPIDIALERPKDP---DHGDYATNVAFRLAKKLK-----KN 52
Query: 148 PFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 188
P ++A+ IA +L + +++K+E+A PGF+N FL
Sbjct: 53 PRELAEEIAE----KLPKSD----LVEKVEIAGPGFINFFL 85
Score = 67.6 bits (166), Expect = 9e-14
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 479 DYLSDVFTHAVQVAFPELGDKT-ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 537
D L + A++ A G+ ++ + GD+ N A L K K KN
Sbjct: 1 DLLKEAIAEALKKALGVEGEPIDIALERPKDP---DHGDYATNVAFRLAKKLK-----KN 52
Query: 538 PFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 578
P ++A+ IA +L + +++K+E+A PGF+N FL
Sbjct: 53 PRELAEEIAE----KLPKSD----LVEKVEIAGPGFINFFL 85
Score = 67.6 bits (166), Expect = 9e-14
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 1106 DYLSDVFTHAVQVAFPELGDKT-ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 1164
D L + A++ A G+ ++ + GD+ N A L K K KN
Sbjct: 1 DLLKEAIAEALKKALGVEGEPIDIALERPKDP---DHGDYATNVAFRLAKKLK-----KN 52
Query: 1165 PFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 1205
P ++A+ IA +L + +++K+E+A PGF+N FL
Sbjct: 53 PRELAEEIAE----KLPKSD----LVEKVEIAGPGFINFFL 85
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 51.7 bits (124), Expect = 2e-07
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 218 VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 268
FS +H+GHLR+ + D +++ LG+ V + + D G G
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIG 51
Score = 51.7 bits (124), Expect = 2e-07
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 608 VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 658
FS +H+GHLR+ + D +++ LG+ V + + D G G
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIG 51
Score = 51.7 bits (124), Expect = 2e-07
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 1235 VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 1285
FS +H+GHLR+ + D +++ LG+ V + + D G G
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIG 51
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 39.9 bits (94), Expect = 0.010
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH R+ ++ D + R L YLG+ V
Sbjct: 37 HIGHARTYVVFDVLRRYLRYLGYKV 61
Score = 39.9 bits (94), Expect = 0.010
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH R+ ++ D + R L YLG+ V
Sbjct: 37 HIGHARTYVVFDVLRRYLRYLGYKV 61
Score = 39.9 bits (94), Expect = 0.010
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH R+ ++ D + R L YLG+ V
Sbjct: 37 HIGHARTYVVFDVLRRYLRYLGYKV 61
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 37.9 bits (89), Expect = 0.019
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDVV 255
H+GH R+ ++ D + R LE LG+ V
Sbjct: 35 HIGHARTYVVFDVLRRYLEDLGYKVR 60
Score = 37.9 bits (89), Expect = 0.019
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDVV 645
H+GH R+ ++ D + R LE LG+ V
Sbjct: 35 HIGHARTYVVFDVLRRYLEDLGYKVR 60
Score = 37.9 bits (89), Expect = 0.019
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDVV 1272
H+GH R+ ++ D + R LE LG+ V
Sbjct: 35 HIGHARTYVVFDVLRRYLEDLGYKVR 60
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 38.2 bits (90), Expect = 0.033
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV--VR 256
H+GH RS ++ D + R L YLG+ V VR
Sbjct: 38 HIGHARSFVVFDVLRRYLRYLGYKVTYVR 66
Score = 38.2 bits (90), Expect = 0.033
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV--VR 646
H+GH RS ++ D + R L YLG+ V VR
Sbjct: 38 HIGHARSFVVFDVLRRYLRYLGYKVTYVR 66
Score = 38.2 bits (90), Expect = 0.033
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV--VR 1273
H+GH RS ++ D + R L YLG+ V VR
Sbjct: 38 HIGHARSFVVFDVLRRYLRYLGYKVTYVR 66
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 38.0 bits (89), Expect = 0.041
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 207 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 254
+K VLV F P+ A +HVGH+R+ IGD I+R G++V
Sbjct: 29 DSDKPEKFYVLVMFPYPSGA--LHVGHVRNYTIGDVIARYKRMQGYNV 74
Score = 38.0 bits (89), Expect = 0.041
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 597 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 644
+K VLV F P+ A +HVGH+R+ IGD I+R G++V
Sbjct: 29 DSDKPEKFYVLVMFPYPSGA--LHVGHVRNYTIGDVIARYKRMQGYNV 74
Score = 38.0 bits (89), Expect = 0.041
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1224 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 1271
+K VLV F P+ A +HVGH+R+ IGD I+R G++V
Sbjct: 29 DSDKPEKFYVLVMFPYPSGA--LHVGHVRNYTIGDVIARYKRMQGYNV 74
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 36.5 bits (85), Expect = 0.097
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDVV 255
H+GHL +TI D +R L G+DV+
Sbjct: 15 HIGHLYTTIPADVYARYLRLRGYDVL 40
Score = 36.5 bits (85), Expect = 0.097
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDVV 645
H+GHL +TI D +R L G+DV+
Sbjct: 15 HIGHLYTTIPADVYARYLRLRGYDVL 40
Score = 36.5 bits (85), Expect = 0.097
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDVV 1272
H+GHL +TI D +R L G+DV+
Sbjct: 15 HIGHLYTTIPADVYARYLRLRGYDVL 40
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 36.0 bits (84), Expect = 0.12
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDVV 255
H+GHL T++ D +R G+DV+
Sbjct: 16 HLGHLYGTVLADVFARYQRLRGYDVL 41
Score = 36.0 bits (84), Expect = 0.12
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDVV 645
H+GHL T++ D +R G+DV+
Sbjct: 16 HLGHLYGTVLADVFARYQRLRGYDVL 41
Score = 36.0 bits (84), Expect = 0.12
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDVV 1272
H+GHL T++ D +R G+DV+
Sbjct: 16 HLGHLYGTVLADVFARYQRLRGYDVL 41
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 35.8 bits (83), Expect = 0.16
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDVV 255
H+GH R+ I+ D + R L YLG+ V
Sbjct: 36 HIGHARTAIVFDVLRRYLRYLGYKVQ 61
Score = 35.8 bits (83), Expect = 0.16
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDVV 645
H+GH R+ I+ D + R L YLG+ V
Sbjct: 36 HIGHARTAIVFDVLRRYLRYLGYKVQ 61
Score = 35.8 bits (83), Expect = 0.16
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDVV 1272
H+GH R+ I+ D + R L YLG+ V
Sbjct: 36 HIGHARTAIVFDVLRRYLRYLGYKVQ 61
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 36.1 bits (84), Expect = 0.17
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDVV 255
H+GHL + + D +R L G++V
Sbjct: 21 HLGHLYTYLAADVYARYLRLRGYEVF 46
Score = 36.1 bits (84), Expect = 0.17
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDVV 645
H+GHL + + D +R L G++V
Sbjct: 21 HLGHLYTYLAADVYARYLRLRGYEVF 46
Score = 36.1 bits (84), Expect = 0.17
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDVV 1272
H+GHL + + D +R L G++V
Sbjct: 21 HLGHLYTYLAADVYARYLRLRGYEVF 46
>gnl|CDD|223056 PHA03362, PHA03362, single-stranded binding protein UL29;
Provisional.
Length = 1189
Score = 36.2 bits (84), Expect = 0.19
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 360 YQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 419
Y+ +E+++ YLEK+GL++ D GED +I++ F + L+ + + +
Sbjct: 573 YRATLERVMDYLEKEGLIDPDT---PTSGEDT-----SIIRDRASF---MTALSNLNRTV 621
Query: 420 EEEKADWIVYVTDHRSYH 437
+EE ++ + + R Y
Sbjct: 622 DEEAEQFMRNLVEARDYK 639
Score = 36.2 bits (84), Expect = 0.19
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 1377 YQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 1436
Y+ +E+++ YLEK+GL++ D GED +I++ F + L+ + + +
Sbjct: 573 YRATLERVMDYLEKEGLIDPDT---PTSGEDT-----SIIRDRASF---MTALSNLNRTV 621
Query: 1437 EEEKADWIVYVTDHRSYH 1454
+EE ++ + + R Y
Sbjct: 622 DEEAEQFMRNLVEARDYK 639
Score = 31.9 bits (73), Expect = 3.4
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 750 YQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 809
Y+ +E+++ YLEK+GL++ D GED +I++ F + L+ + + +
Sbjct: 573 YRATLERVMDYLEKEGLIDPDT---PTSGEDT-----SIIRDRASF---MTALSNLNRTV 621
Query: 810 EEE 812
+EE
Sbjct: 622 DEE 624
>gnl|CDD|234008 TIGR02778, ligD_pol, DNA polymerase LigD, polymerase domain. DNA
repair of double-stranded breaks by non-homologous end
joining (NHEJ) is accomplished by a two-protein system
that is present in a minority of prokaryotes. One
component is the Ku protein (see TIGR02772), which binds
DNA ends. The other is a DNA ligase, a protein that is a
multidomain polypeptide in most of those bacteria that
have NHEJ, a permuted polypeptide in Mycobacterium
tuberculosis and a few other species, and the product of
tandem genes in some other bacteria. This model
represents the polymerase domain.
Length = 245
Score = 35.0 bits (81), Expect = 0.24
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 26/103 (25%)
Query: 745 RGESFYQKHMEQ---------LVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGF 795
GE F+QKH+ Q V + + L ++D ++W +G++ I
Sbjct: 51 GGECFFQKHLPQGAPPFVVSAEVEESDGETYLVINDAEGLLWLVQQGALEFHIWG----- 105
Query: 796 TYDTSDLAAIRQRIE-EEKADWIVYVTDLGQGVHFRLLEECAK 837
RI+ EK D IV+ D G GV ++L+ E A+
Sbjct: 106 -----------ARIDAPEKPDRIVFDLDPGPGVAWKLVVEAAQ 137
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 35.3 bits (81), Expect = 0.28
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 223 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD 276
P + H+G+LR+ + DT+ R L +LG+ V + ++ D G HL D
Sbjct: 31 PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVG--------HLTD 76
Score = 35.3 bits (81), Expect = 0.28
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 613 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD 666
P + H+G+LR+ + DT+ R L +LG+ V + ++ D G HL D
Sbjct: 31 PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVG--------HLTD 76
Score = 35.3 bits (81), Expect = 0.28
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 1240 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD 1293
P + H+G+LR+ + DT+ R L +LG+ V + ++ D G HL D
Sbjct: 31 PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVG--------HLTD 76
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 34.5 bits (80), Expect = 0.32
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 213 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 254
K +LV F P+ A +HVGH+R+ IGD I+R G++V
Sbjct: 1 KFYILVMFPYPSGA--LHVGHVRTYTIGDIIARYKRMQGYNV 40
Score = 34.5 bits (80), Expect = 0.32
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 603 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 644
K +LV F P+ A +HVGH+R+ IGD I+R G++V
Sbjct: 1 KFYILVMFPYPSGA--LHVGHVRTYTIGDIIARYKRMQGYNV 40
Score = 34.5 bits (80), Expect = 0.32
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 1230 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 1271
K +LV F P+ A +HVGH+R+ IGD I+R G++V
Sbjct: 1 KFYILVMFPYPSGA--LHVGHVRTYTIGDIIARYKRMQGYNV 40
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 34.2 bits (79), Expect = 0.41
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 262
H+GH RS + D + R L+ LG+DV + + D
Sbjct: 24 HIGHARSAVAFDVLRRYLQALGYDVQFVQNFTD 56
Score = 34.2 bits (79), Expect = 0.41
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 652
H+GH RS + D + R L+ LG+DV + + D
Sbjct: 24 HIGHARSAVAFDVLRRYLQALGYDVQFVQNFTD 56
Score = 34.2 bits (79), Expect = 0.41
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 1279
H+GH RS + D + R L+ LG+DV + + D
Sbjct: 24 HIGHARSAVAFDVLRRYLQALGYDVQFVQNFTD 56
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 33.6 bits (77), Expect = 1.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 203 NGVQPPTLN---KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 255
N T + K +L F P+ A +H+GH+R+ I D +SR G++V+
Sbjct: 17 NKTFKVTDDSSKPKYYILSMFPYPSGA--LHMGHVRNYTITDVLSRYYRMKGYNVL 70
Score = 33.6 bits (77), Expect = 1.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 593 NGVQPPTLN---KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 645
N T + K +L F P+ A +H+GH+R+ I D +SR G++V+
Sbjct: 17 NKTFKVTDDSSKPKYYILSMFPYPSGA--LHMGHVRNYTITDVLSRYYRMKGYNVL 70
Score = 33.6 bits (77), Expect = 1.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 1220 NGVQPPTLN---KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 1272
N T + K +L F P+ A +H+GH+R+ I D +SR G++V+
Sbjct: 17 NKTFKVTDDSSKPKYYILSMFPYPSGA--LHMGHVRNYTITDVLSRYYRMKGYNVL 70
>gnl|CDD|234007 TIGR02776, NHEJ_ligase_prk, DNA ligase D. Members of this protein
family are DNA ligases involved in the repair of DNA
double-stranded breaks by non-homologous end joining
(NHEJ). The system of the bacterial Ku protein
(TIGR02772) plus this DNA ligase is seen in about 20 %
of bacterial genomes to date and at least one archaeon
(Archeoglobus fulgidus). This model describes a central
and a C-terminal domain. These two domains may be
permuted, as in genus Mycobacterium, or divided into
tandem ORFs, and therefore not be identified by This
model. An additional N-terminal 3'-phosphoesterase (PE)
domain present in some but not all examples of this
ligase is not included in the seed alignment for this
model; This model models only the central ATP-dependent
ligase domain and the C-terminal polymerase domain. Most
examples of genes for this ligase are adjacent to the
gene for Ku [DNA metabolism, DNA replication,
recombination, and repair].
Length = 552
Score = 33.1 bits (76), Expect = 1.4
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 22/100 (22%)
Query: 745 RGESFYQKHMEQLVPYL-------EKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTY 797
GE F+QKH P ++K L +D ++W +G++ I G T
Sbjct: 330 GGECFFQKHAPDYAPPFVASFKDGDEKEYLVCNDAEGLLWLAQQGALEFHI----WGQTI 385
Query: 798 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAK 837
D+ D K D IV+ D GV F+L E A+
Sbjct: 386 DSLD-----------KPDRIVFDLDPPPGVAFKLAVEAAQ 414
>gnl|CDD|238874 cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and
similar esterases/lipases. FeeA and FeeB are part of a
biosynthetic gene cluster and may participate in the
biosynthesis of long-chain N-acyltyrosines by providing
saturated and unsaturated fatty acids, which it turn are
loaded onto the acyl carrier protein FeeL. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 191
Score = 31.9 bits (73), Expect = 1.4
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 253 DVVRLNHVGDWGTQFGMLIAHLQDKFPD---YLTKSPPIADLQAF 294
DV L + W Q L+ L+ KFP +T PP+ A
Sbjct: 79 DVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPAL 123
Score = 31.9 bits (73), Expect = 1.4
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 643 DVVRLNHVGDWGTQFGMLIAHLQDKFPD---YLTKSPPIADLQAF 684
DV L + W Q L+ L+ KFP +T PP+ A
Sbjct: 79 DVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPAL 123
Score = 31.9 bits (73), Expect = 1.4
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 1270 DVVRLNHVGDWGTQFGMLIAHLQDKFPD---YLTKSPPIADLQAF 1311
DV L + W Q L+ L+ KFP +T PP+ A
Sbjct: 79 DVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPAL 123
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 32.7 bits (75), Expect = 1.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDVV 255
H+GH +TI+ D +R G++V+
Sbjct: 15 HLGHAYTTILADVYARYKRLRGYEVL 40
Score = 32.7 bits (75), Expect = 1.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDVV 645
H+GH +TI+ D +R G++V+
Sbjct: 15 HLGHAYTTILADVYARYKRLRGYEVL 40
Score = 32.7 bits (75), Expect = 1.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDVV 1272
H+GH +TI+ D +R G++V+
Sbjct: 15 HLGHAYTTILADVYARYKRLRGYEVL 40
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 32.7 bits (76), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH+R+ IGD I+R G++V
Sbjct: 48 HMGHVRNYTIGDVIARYKRMQGYNV 72
Score = 32.7 bits (76), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH+R+ IGD I+R G++V
Sbjct: 48 HMGHVRNYTIGDVIARYKRMQGYNV 72
Score = 32.7 bits (76), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH+R+ IGD I+R G++V
Sbjct: 48 HMGHVRNYTIGDVIARYKRMQGYNV 72
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 32.5 bits (75), Expect = 2.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 229 MHVGHLRSTIIGDTISRLLEYLGHDV 254
+HVGH R+ IGD I+R G++V
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNV 26
Score = 32.5 bits (75), Expect = 2.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 619 MHVGHLRSTIIGDTISRLLEYLGHDV 644
+HVGH R+ IGD I+R G++V
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNV 26
Score = 32.5 bits (75), Expect = 2.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1246 MHVGHLRSTIIGDTISRLLEYLGHDV 1271
+HVGH R+ IGD I+R G++V
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNV 26
>gnl|CDD|212149 cd11542, NTP-PPase_u5, Nucleoside Triphosphate Pyrophosphohydrolase
(EC 3.6.1.8) MazG-like domain found in a group of
uncharacterized proteins from bacteria and archaea.
This family corresponds to a group of uncharacterized
hypothetical proteins from bacteria, showing a high
sequence similarity to the dimeric 2-deoxyuridine
5'-triphosphate nucleotidohydrolase (dUTP
pyrophosphatase or dUTPase) and NTP-PPase MazG proteins.
However, unlike typical tandem-domain MazG proteins,
members in this family consist of a single MazG-like
domain that contains a well conserved divalent
ion-binding motif EXX[E/D].
Length = 99
Score = 29.2 bits (66), Expect = 4.2
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 801 DLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 850
D R IE E AD ++ + D G+ L A+K NK R D
Sbjct: 53 DKLPHRPMIEVELADAVIRIFDTAGGLGIDLEGAIAEKMAY---NKNRPD 99
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 30.8 bits (70), Expect = 4.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 299 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 343
K+R+D+D +FK +A R + KK I D R DF K
Sbjct: 197 KRRWDDDVVFKNQA--------RGEEKKKKRETFINDTLRSDFHK 233
Score = 30.8 bits (70), Expect = 4.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 689 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 733
K+R+D+D +FK +A R + KK I D R DF K
Sbjct: 197 KRRWDDDVVFKNQA--------RGEEKKKKRETFINDTLRSDFHK 233
Score = 30.8 bits (70), Expect = 4.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 1316 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 1360
K+R+D+D +FK +A R + KK I D R DF K
Sbjct: 197 KRRWDDDVVFKNQA--------RGEEKKKKRETFINDTLRSDFHK 233
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 30.9 bits (71), Expect = 6.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH +TI D ++R G+DV
Sbjct: 20 HIGHAYTTIAADALARYKRLQGYDV 44
Score = 30.9 bits (71), Expect = 6.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH +TI D ++R G+DV
Sbjct: 20 HIGHAYTTIAADALARYKRLQGYDV 44
Score = 30.9 bits (71), Expect = 6.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH +TI D ++R G+DV
Sbjct: 20 HIGHAYTTIAADALARYKRLQGYDV 44
>gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and
related glycosidases [Carbohydrate transport and
metabolism].
Length = 697
Score = 30.4 bits (69), Expect = 8.0
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 759 PYLEKKGLLELDDGRK-IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 817
P ++ E G K I W G IP+T + GFT A+ ++ +K +
Sbjct: 589 PAFRRRSFFEGKRGVKDITWLNWNG-IPLTQDDWNNGFTG------ALAVVLDGDKERLL 641
Query: 818 VYVTDLGQGVHFRLLEECAKKAGILN 843
V + + V F L E+ K AG+++
Sbjct: 642 VLINATAEPVEFELPEDEGKWAGLVD 667
>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and
modification].
Length = 222
Score = 30.0 bits (67), Expect = 8.1
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 43 KHRLAILQRAIAEEEKKQ--------GISSSISSQTKGAAKKMNVPVRDRMSVRDYLSDV 94
KH+ +R+ + + I + K + K+ +P S+ +
Sbjct: 77 KHKENSSRRSEEKSSLGRENQTTHDFRQQQKII-EAKQSLKRSGIPSYKVRSLVEPKGGR 135
Query: 95 FTHAVQVAFPE 105
+QV + +
Sbjct: 136 RGLGIQVNYED 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 75,240,042
Number of extensions: 7695386
Number of successful extensions: 8604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8465
Number of HSP's successfully gapped: 140
Length of query: 1458
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1349
Effective length of database: 6,103,016
Effective search space: 8232968584
Effective search space used: 8232968584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.7 bits)