RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15414
(1458 letters)
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces
cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A*
1f7v_A*
Length = 607
Score = 638 bits (1647), Expect = 0.0
Identities = 155/639 (24%), Positives = 261/639 (40%), Gaps = 59/639 (9%)
Query: 446 EEKKQGISSSSSSQTKGTAKKMNVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVAS 505
+ + +S + + K + +N+ R + LS + + FP L +
Sbjct: 8 ISQLKKLSIAEPAVAKDSHPDVNIVDLMRNYISQELSKISGVDSSLIFPAL------EWT 61
Query: 506 TNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDK 565
+ GD + + NP D+A A + ++K
Sbjct: 62 NTME----RGDLLIPIPRL-------RIKGANPKDLAVQWAE----KFPCGD----FLEK 102
Query: 566 IEVAKPGFVNVFLSRVYAGEQIKDIIVN-----GVQPPTLNKKLRVLVDFSSPNIAKEMH 620
+E P F+ F + + + + I+ G NKK V+++FSSPNIAK H
Sbjct: 103 VEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKK--VIIEFSSPNIAKPFH 159
Query: 621 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 680
GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+L + + PI
Sbjct: 160 AGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 219
Query: 681 LQAFYKESKKRFDE-------DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 733
L Y K +E ++ +A + ++ D + K W+ + S +
Sbjct: 220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYID 279
Query: 734 IYDRLNVTLTE-RGES-FYQKHMEQLVPYLEKKGLLELDDGRKIMW--GEDRGSIPMTIV 789
Y RLN+ GES ++ M + + ++KGL D G ++ ++ +
Sbjct: 280 TYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQ 339
Query: 790 KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 849
KSDG Y T D+ A R E+ D ++YV Q +H E K+ G +
Sbjct: 340 KSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGF--EWAKDL 397
Query: 850 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 909
V FG+V G TR G V L +L+E + + +K KN + E
Sbjct: 398 QHVNFGMVQG-----MSTRKGTVVFLDNILEETKEKMHEVMK-KNENKYAQIEHPEEVAD 451
Query: 910 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLR 969
V + D+ R +Y F +++ML G+T YL YA++R+ S+ R A +++
Sbjct: 452 LVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKW 511
Query: 970 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1029
+ A L+ L + L + DVL + + YL+ ++ S YD +
Sbjct: 512 INAD--FSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLW 569
Query: 1030 CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1068
+ E + T RL L A +V+ +L +
Sbjct: 570 VAGQTEE-----LATARLALYGAARQVLYNGMRLLGLTP 603
Score = 389 bits (1002), Expect = e-120
Identities = 99/408 (24%), Positives = 167/408 (40%), Gaps = 46/408 (11%)
Query: 56 EEKKQGISSSISSQTKGAAKKMNVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVAS 115
+ + +S + + K + +N+ R + LS + + FP L +
Sbjct: 8 ISQLKKLSIAEPAVAKDSHPDVNIVDLMRNYISQELSKISGVDSSLIFPAL------EWT 61
Query: 116 TNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDK 175
+ GD + + NP D+A A + ++K
Sbjct: 62 NTME----RGDLLIPIPRL-------RIKGANPKDLAVQWAE----KFPCGD----FLEK 102
Query: 176 IEVAKPGFVNVFLSRVYAGEQIKDIIVN-----GVQPPTLNKKLRVLVDFSSPNIAKEMH 230
+E P F+ F + + + + I+ G NKK V+++FSSPNIAK H
Sbjct: 103 VEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKK--VIIEFSSPNIAKPFH 159
Query: 231 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 290
GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+L + + PI
Sbjct: 160 AGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 219
Query: 291 LQAFYKESKKRFDE-------DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 343
L Y K +E ++ +A + ++ D + K W+ + S +
Sbjct: 220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYID 279
Query: 344 IYDRLNVTLTE-RGES-FYQKHMEQLVPYLEKKGLLELDDGRKIMW--GEDRGSIPMTIV 399
Y RLN+ GES ++ M + + ++KGL D G ++ ++ +
Sbjct: 280 TYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQ 339
Query: 400 KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHR-SYH-QVLQAIAE 445
KSDG Y T D+ A R E+ D ++YV + H I +
Sbjct: 340 KSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILK 387
Score = 387 bits (996), Expect = e-120
Identities = 98/399 (24%), Positives = 165/399 (41%), Gaps = 45/399 (11%)
Query: 1073 EEKKQGISSSISSQTKGAAKKMNVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVAS 1132
+ + +S + + K + +N+ R + LS + + FP L +
Sbjct: 8 ISQLKKLSIAEPAVAKDSHPDVNIVDLMRNYISQELSKISGVDSSLIFPAL------EWT 61
Query: 1133 TNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDK 1192
+ GD + + NP D+A A + ++K
Sbjct: 62 NTME----RGDLLIPIPRL-------RIKGANPKDLAVQWAE----KFPCGD----FLEK 102
Query: 1193 IEVAKPGFVNVFLSRVYAGEQIKDIIVN-----GVQPPTLNKKLRVLVDFSSPNIAKEMH 1247
+E P F+ F + + + + I+ G NKK V+++FSSPNIAK H
Sbjct: 103 VEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKK--VIIEFSSPNIAKPFH 159
Query: 1248 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 1307
GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+L + + PI
Sbjct: 160 AGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 219
Query: 1308 LQAFYKESKKRFDE-------DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 1360
L Y K +E ++ +A + ++ D + K W+ + S +
Sbjct: 220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYID 279
Query: 1361 IYDRLNVTLTE-RGES-FYQKHMEQLVPYLEKKGLLELDDGRKIMW--GEDRGSIPMTIV 1416
Y RLN+ GES ++ M + + ++KGL D G ++ ++ +
Sbjct: 280 TYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQ 339
Query: 1417 KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHR-SYH 1454
KSDG Y T D+ A R E+ D ++YV + H
Sbjct: 340 KSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLH 378
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 568 bits (1466), Expect = 0.0
Identities = 126/651 (19%), Positives = 256/651 (39%), Gaps = 85/651 (13%)
Query: 475 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 534
M +R+ + + ++ P+ + + + K GDF A L K+ K
Sbjct: 3 MEIRESVKERIEEIIKEIAPQWEGEIELKETPDPK----LGDFGTPIAFKLAKLLK---- 54
Query: 535 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 593
+ P +IA+ I + +L + I ++ A G++NVF+ + + + I+
Sbjct: 55 -RPPIEIAEKIVEKL------KLNLPEGIKDVK-AVNGYINVFIDYPHFARILINDILAK 106
Query: 594 ----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 649
G KK V+V+ +S N K +H+GH R+ I+GD ++R+L +LG++V N+
Sbjct: 107 GDRFGSSEIGKGKK--VIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNY 164
Query: 650 VGDWGTQFGMLIAHLQDKFP-----------DYLTKSPPIADLQAFYKESKKRFDEDEIF 698
+ D G QF + L +P L Y E +R +++
Sbjct: 165 IDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPEL 224
Query: 699 KKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLV 758
+ + L+ + +K E + K+ + ++ + E + +K E +
Sbjct: 225 ENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWE-SDIVRRKLFEIAL 283
Query: 759 PYLEKKGLL-----ELDDGRKIM----WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 809
L K G +M D + + + +SDG TY D+A +
Sbjct: 284 ELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKF 343
Query: 810 EEEKADW----------------------------IVYVTDLGQGVHFRLLEECAKKAGI 841
+ D ++ V Q ++ + G
Sbjct: 344 GKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAIKYALQLLGF 403
Query: 842 LNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS--ELLDEGLRRSLDKLKDKNRHTEL 899
+ + + V + KF R G V + E++ E ++R+ + +++KN L
Sbjct: 404 E-DAAANLYHLAYEHVERPE-GKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP--AL 459
Query: 900 TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 959
+ E +E + V G I+Y + ++ + +F ++ +L+ G +A Y+ YA+ R +SI R
Sbjct: 460 SDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILR 519
Query: 960 TAGIN--SEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI 1017
A D ++ + E+E L L + ++ +D+ H + + ++
Sbjct: 520 KAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANEL 579
Query: 1018 STAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1068
++ F++FY + ++ + V RLLL A +V+K ++ I
Sbjct: 580 ASLFNKFYMDHPVLKAEEG-----VREARLLLVMAVEQVLKNALYLMGIEA 625
Score = 332 bits (853), Expect = 1e-99
Identities = 75/416 (18%), Positives = 150/416 (36%), Gaps = 74/416 (17%)
Query: 85 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 144
M +R+ + + ++ P+ + + + K GDF A L K+ K
Sbjct: 3 MEIRESVKERIEEIIKEIAPQWEGEIELKETPDPK----LGDFGTPIAFKLAKLLK---- 54
Query: 145 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 203
+ P +IA+ I + +L + I ++ A G++NVF+ + + + I+
Sbjct: 55 -RPPIEIAEKIVEKL------KLNLPEGIKDVK-AVNGYINVFIDYPHFARILINDILAK 106
Query: 204 ----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 259
G KK V+V+ +S N K +H+GH R+ I+GD ++R+L +LG++V N+
Sbjct: 107 GDRFGSSEIGKGKK--VIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNY 164
Query: 260 VGDWGTQFGMLIAHLQDKFP-----------DYLTKSPPIADLQAFYKESKKRFDEDEIF 308
+ D G QF + L +P L Y E +R +++
Sbjct: 165 IDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPEL 224
Query: 309 KKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLV 368
+ + L+ + +K E + K+ + ++ + E + +K E +
Sbjct: 225 ENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWE-SDIVRRKLFEIAL 283
Query: 369 PYLEKKGLL-----ELDDGRKIM----WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 419
L K G +M D + + + +SDG TY D+A +
Sbjct: 284 ELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKF 343
Query: 420 EEEKADW----------------------------IVYVTDHR-SYH-QVLQAIAE 445
+ D ++ V + ++ +
Sbjct: 344 GKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAIKYALQ 399
Score = 330 bits (847), Expect = 9e-99
Identities = 76/408 (18%), Positives = 148/408 (36%), Gaps = 73/408 (17%)
Query: 1102 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 1161
M +R+ + + ++ P+ + + + K GDF A L K+ K
Sbjct: 3 MEIRESVKERIEEIIKEIAPQWEGEIELKETPDPK----LGDFGTPIAFKLAKLLK---- 54
Query: 1162 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 1220
+ P +IA+ I + +L + I ++ A G++NVF+ + + + I+
Sbjct: 55 -RPPIEIAEKIVEKL------KLNLPEGIKDVK-AVNGYINVFIDYPHFARILINDILAK 106
Query: 1221 ----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 1276
G KK V+V+ +S N K +H+GH R+ I+GD ++R+L +LG++V N+
Sbjct: 107 GDRFGSSEIGKGKK--VIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNY 164
Query: 1277 VGDWGTQFGMLIAHLQDKFP-----------DYLTKSPPIADLQAFYKESKKRFDEDEIF 1325
+ D G QF + L +P L Y E +R +++
Sbjct: 165 IDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPEL 224
Query: 1326 KKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLV 1385
+ + L+ + +K E + K+ + ++ + E + +K E +
Sbjct: 225 ENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWE-SDIVRRKLFEIAL 283
Query: 1386 PYLEKKGLL-----ELDDGRKIM----WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 1436
L K G +M D + + + +SDG TY D+A +
Sbjct: 284 ELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKF 343
Query: 1437 EEEKADW----------------------------IVYVTDHR-SYHQ 1455
+ D ++ V + Q
Sbjct: 344 GKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQ 391
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 531 bits (1369), Expect = e-174
Identities = 127/632 (20%), Positives = 232/632 (36%), Gaps = 89/632 (14%)
Query: 481 LSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 539
L A+ A E+G VA + K GD+ AL K + K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQ 52
Query: 540 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT 599
IAQ + + L + +++ G++N L +++ + P
Sbjct: 53 AIAQELKDRL--------PLPEFVEEAVPV-GGYLNFRLRTEAL---LREALRPKAPFPR 100
Query: 600 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 659
VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 101 RPGV--VLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAE 158
Query: 660 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP-DYKK 718
+ L+ + K F + R +D +++ L + + ++
Sbjct: 159 TLFALRHYGLTWDGKEKYD----HFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELRE 214
Query: 719 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW- 777
I + R ++ + E + +++ + LE+ + K
Sbjct: 215 EVNRILLAQMATMHALNARYDLLVWE-SDIVRAGLLQKALALLEQSPHVFRPREGKYAGA 273
Query: 778 --------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE------------------ 811
+++S+G TY D+A ++
Sbjct: 274 LVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLR 333
Query: 812 ----------EKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED 861
KA+ + V D+ Q L+ AG + + + VL E
Sbjct: 334 TSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYP-ALAEKAHHLAYETVLLEG 392
Query: 862 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 921
++ R G V + E+L+E RR+ +++KN + EA + VA G I+++ +
Sbjct: 393 -RQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHP----DKEEAARMVALGAIRFSMV 447
Query: 922 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEH 981
F + + L G+T Y+ YA+ R SI R AG +S
Sbjct: 448 KTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAP--------DLSQAT 499
Query: 982 EKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY-----CIEKDAE 1036
E ALA LL + ++ + H L +YL D++ +++ +Y+ A
Sbjct: 500 PYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAP 559
Query: 1037 GKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1068
++ RL L ++ + + D+L I
Sbjct: 560 EGLR---ELRLSLVQSLQRTLATGLDLLGIPA 588
Score = 302 bits (776), Expect = 1e-89
Identities = 74/396 (18%), Positives = 138/396 (34%), Gaps = 69/396 (17%)
Query: 91 LSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 149
L A+ A E+G VA + K GD+ AL K + K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQ 52
Query: 150 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT 209
IAQ + + L + +++ G++N L +++ + P
Sbjct: 53 AIAQELKDRL--------PLPEFVEEAVPV-GGYLNFRLRTEAL---LREALRPKAPFPR 100
Query: 210 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 269
VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 101 RPGV--VLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAE 158
Query: 270 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP-DYKK 328
+ L+ + K F + R +D +++ L + + ++
Sbjct: 159 TLFALRHYGLTWDGKEKYD----HFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELRE 214
Query: 329 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW- 387
I + R ++ + E + +++ + LE+ + K
Sbjct: 215 EVNRILLAQMATMHALNARYDLLVWE-SDIVRAGLLQKALALLEQSPHVFRPREGKYAGA 273
Query: 388 --------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE------------------ 421
+++S+G TY D+A ++
Sbjct: 274 LVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLR 333
Query: 422 ----------EKADWIVYVTDHR-SYH-QVLQAIAE 445
KA+ + V D R S+ +++A
Sbjct: 334 TSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALA 369
Score = 300 bits (771), Expect = 8e-89
Identities = 74/388 (19%), Positives = 135/388 (34%), Gaps = 68/388 (17%)
Query: 1108 LSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 1166
L A+ A E+G VA + K GD+ AL K + K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQ 52
Query: 1167 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT 1226
IAQ + + L + +++ G++N L +++ + P
Sbjct: 53 AIAQELKDRL--------PLPEFVEEAVPV-GGYLNFRLRTEAL---LREALRPKAPFPR 100
Query: 1227 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 1286
VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 101 RPGV--VLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAE 158
Query: 1287 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP-DYKK 1345
+ L+ + K F + R +D +++ L + + ++
Sbjct: 159 TLFALRHYGLTWDGKEKYD----HFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELRE 214
Query: 1346 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW- 1404
I + R ++ + E + +++ + LE+ + K
Sbjct: 215 EVNRILLAQMATMHALNARYDLLVWE-SDIVRAGLLQKALALLEQSPHVFRPREGKYAGA 273
Query: 1405 --------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE------------------ 1438
+++S+G TY D+A ++
Sbjct: 274 LVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLR 333
Query: 1439 ----------EKADWIVYVTDHR-SYHQ 1455
KA+ + V D R S+ Q
Sbjct: 334 TSAPEGEAYTPKAEETINVVDVRQSHPQ 361
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics,
protein structure initiative; 2.20A {Campylobacter
jejuni}
Length = 464
Score = 139 bits (352), Expect = 6e-35
Identities = 97/528 (18%), Positives = 190/528 (35%), Gaps = 117/528 (22%)
Query: 576 VFLSRVYAGEQIKDIIVNGVQ-PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 634
+ LS+ + E + N K+ L+++ S N +H+GH R + GDT++
Sbjct: 1 MSLSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLT 60
Query: 635 RLLEYLGHDVVRLNHVGDWGTQFGML-----------IAHLQDKFP------DYLTKSPP 677
RL +LG+ +V D G Q +L I H ++P +Y+
Sbjct: 61 RLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIV---D 117
Query: 678 IADLQAFYKESKKRFDEDE---IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKI 734
+A + +++ K F +E A ++ L + + +
Sbjct: 118 LA--KEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQN--------------LEQAKIK 161
Query: 735 YDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG----RKIMWG--EDRGSIPMTI 788
D ++ER S+Y + + L++ + +G G +DR I
Sbjct: 162 ID---SYVSER--SYYDA-LNATLESLKEHKGIYEQEGKIWLASSQKGDEKDR-----VI 210
Query: 789 VKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLG---QGVHFRLLEECAKKAGI--LN 843
++ DG TY +D+ + ++ + + G G R+ KA + L
Sbjct: 211 IREDGRGTYLAADIVYHKDKM-SRGYGKCINI--WGADHHGYIPRM------KAAMEFLG 261
Query: 844 PNKTRMDFV-GFGVVLGEDRKKFK--TRSGDTVKLSELLDE-GLRRSLDKLKDKNRHTEL 899
+ ++ + V L +D + +K R+G+ + +S+++DE G D R+
Sbjct: 262 FDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIG--------SDALRYI-- 311
Query: 900 TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIA 958
+ + +L+ F + D N Y+ YA+ RI +
Sbjct: 312 ------------------FLSKKCDTHLE--FDISDLQKEDSSNPVYYINYAHARIHQVF 351
Query: 959 RTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS 1018
AG +D+ + ++ L L + VL L + +YL +++
Sbjct: 352 AKAGKKIDDV----MKADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLA 407
Query: 1019 TAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1066
F +FY+ + E L L A +K F ++ I
Sbjct: 408 ANFHKFYNENKVVGSANE-------NDLLKLFSLVALSIKTAFSLMGI 448
Score = 77.3 bits (191), Expect = 1e-14
Identities = 55/289 (19%), Positives = 108/289 (37%), Gaps = 60/289 (20%)
Query: 186 VFLSRVYAGEQIKDIIVNGVQ-PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 244
+ LS+ + E + N K+ L+++ S N +H+GH R + GDT++
Sbjct: 1 MSLSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLT 60
Query: 245 RLLEYLGHDVVRLNHVGDWGTQFGML-----------IAHLQDKFP------DYLTKSPP 287
RL +LG+ +V D G Q +L I H ++P +Y+
Sbjct: 61 RLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIV---D 117
Query: 288 IADLQAFYKESKKRFDEDE---IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKI 344
+A + +++ K F +E A ++ L + + +
Sbjct: 118 LA--KEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQN--------------LEQAKIK 161
Query: 345 YDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG----RKIMWG--EDRGSIPMTI 398
D ++ER S+Y + + L++ + +G G +DR I
Sbjct: 162 ID---SYVSER--SYYDA-LNATLESLKEHKGIYEQEGKIWLASSQKGDEKDR-----VI 210
Query: 399 VKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV--TDHRSYHQVLQAIAE 445
++ DG TY +D+ + ++ + + DH Y ++A E
Sbjct: 211 IREDGRGTYLAADIVYHKDKM-SRGYGKCINIWGADHHGYIPRMKAAME 258
Score = 76.9 bits (190), Expect = 1e-14
Identities = 53/280 (18%), Positives = 104/280 (37%), Gaps = 60/280 (21%)
Query: 1203 VFLSRVYAGEQIKDIIVNGVQ-PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 1261
+ LS+ + E + N K+ L+++ S N +H+GH R + GDT++
Sbjct: 1 MSLSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLT 60
Query: 1262 RLLEYLGHDVVRLNHVGDWGTQFGML-----------IAHLQDKFP------DYLTKSPP 1304
RL +LG+ +V D G Q +L I H ++P +Y+
Sbjct: 61 RLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIV---D 117
Query: 1305 IADLQAFYKESKKRFDEDE---IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKI 1361
+A + +++ K F +E A ++ L + + +
Sbjct: 118 LA--KEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQN--------------LEQAKIK 161
Query: 1362 YDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG----RKIMWG--EDRGSIPMTI 1415
D ++ER S+Y + + L++ + +G G +DR I
Sbjct: 162 ID---SYVSER--SYYDA-LNATLESLKEHKGIYEQEGKIWLASSQKGDEKDR-----VI 210
Query: 1416 VKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV--TDHRSY 1453
++ DG TY +D+ + ++ + + DH Y
Sbjct: 211 IREDGRGTYLAADIVYHKDKM-SRGYGKCINIWGADHHGY 249
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578,
structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella
pneumoniae subsp}
Length = 109
Score = 91.7 bits (228), Expect = 4e-22
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 85 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 144
M+++ LS+ + A+ A D V + + +FGD+Q N MA+ K
Sbjct: 4 MNIQALLSEKVSQALIAAGAP-ADCEPQVRQSAKV---QFGDYQANGVMAVAKKLG---- 55
Query: 145 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 201
P +A+ + S L N + +K+E+A PGF+N+FL + + + +
Sbjct: 56 -MAPRQLAEQVLS----HLDLNG----IANKVEIAGPGFINIFLDPAFLADNVNRAL 103
Score = 91.7 bits (228), Expect = 4e-22
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 475 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 534
M+++ LS+ + A+ A D V + + +FGD+Q N MA+ K
Sbjct: 4 MNIQALLSEKVSQALIAAGAP-ADCEPQVRQSAKV---QFGDYQANGVMAVAKKLG---- 55
Query: 535 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 591
P +A+ + S L N + +K+E+A PGF+N+FL + + + +
Sbjct: 56 -MAPRQLAEQVLS----HLDLNG----IANKVEIAGPGFINIFLDPAFLADNVNRAL 103
Score = 91.7 bits (228), Expect = 4e-22
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 1102 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 1161
M+++ LS+ + A+ A D V + + +FGD+Q N MA+ K
Sbjct: 4 MNIQALLSEKVSQALIAAGAP-ADCEPQVRQSAKV---QFGDYQANGVMAVAKKLG---- 55
Query: 1162 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 1218
P +A+ + S L N + +K+E+A PGF+N+FL + + + +
Sbjct: 56 -MAPRQLAEQVLS----HLDLNG----IANKVEIAGPGFINIFLDPAFLADNVNRAL 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 5e-13
Identities = 103/767 (13%), Positives = 198/767 (25%), Gaps = 281/767 (36%)
Query: 302 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEM--ICD-----VSRRDFQKIY--------- 345
F+ E YQ L F+ + ++ + D +S+ + I
Sbjct: 9 FETGEH----QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 346 DRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGF 405
RL TL + E QK +E +++ + F
Sbjct: 65 LRLFWTLLSKQEEMVQKFVE-------------------------------EVLRINYKF 93
Query: 406 TYDTSDLAAIRQRIEEEKADWIVYVTDHRSYHQVLQAIAEEEKKQGISSSSSSQTKGTAK 465
I+ + +Y+ + Q A
Sbjct: 94 LMS-----PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--------------------- 127
Query: 466 KMNVPVRDRM--SVRDYL------SDVFTHAVQVAFPELGD-KTASVAST--NEKYVHKF 514
K NV R + +R L +V V LG KT + K K
Sbjct: 128 KYNVS-RLQPYLKLRQALLELRPAKNVLIDGV------LGSGKTWVALDVCLSYKVQCKM 180
Query: 515 GD--F-----QCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS-LAKVIDKI 566
F CN + ++ Q + + + + + +I
Sbjct: 181 DFKIFWLNLKNCNSPETV-------------LEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 567 EVAKPGFVNVFLSRVYAGEQIKD--IIVNGVQPPTLNKKL----RVLV--------DFSS 612
+ + S+ Y ++ +++ VQ ++L+ DF S
Sbjct: 228 HSIQAELRRLLKSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 613 PNIAKEMHVGHLRSTIIGD-TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 671
+ + H T+ D S LL+YL L P
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------------PRE 321
Query: 672 LTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRR 729
+ + P ++ + ++ +D W+ +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDN-------------------------WKHV------ 350
Query: 730 DFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL---DDGRKI-------MWGE 779
D+L + ES L P +K L I +W +
Sbjct: 351 ----NCDKLTTII----ESSL----NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 780 DRGSIPMTIV----------KSDGGFTYDTSDLA-AIRQRIEEEKADWIVYVTDLGQGVH 828
S M +V K T + ++ ++E E A +H
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA------------LH 446
Query: 829 FRLLE--ECAKKAGILNPNKTRMD-----FVGF---GVVLGEDRKKFKTRSGDTVKLSEL 878
+++ K + +D +G + E F+ +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-------MV--F 497
Query: 879 LDEGLRRSLDKLKDKNRHTEL----TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFD 934
LD L+ K RH + + L+ QQ Y Y + + ++
Sbjct: 498 LD------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK--PYICDNDPK-------YE 542
Query: 935 KMLDD-----RGNTAVYLLYAYTRIASIA---RTAGINSEDLRVAAQ 973
++++ + YT + IA I E + +
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 68.0 bits (165), Expect = 2e-11
Identities = 82/565 (14%), Positives = 165/565 (29%), Gaps = 180/565 (31%)
Query: 981 HEKEFALAKTLLRMNDVLML----VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE 1036
H +F + + D+L + + + + I + E D+ + KDA
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHII-MSKDAV 61
Query: 1037 GKIKTVHTGRLLLAEATAKVMKKCFDILN-----IRTAIAEEEKKQGISSSISSQTKGAA 1091
+ LL++ V K ++L + + I E+++ + + + + +
Sbjct: 62 SGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 1092 -------KKMNVPVRDRM--SVRDYL------SDVFTHAVQVAFPELGD-KTASVAST-- 1133
K NV R + +R L +V V LG KT
Sbjct: 120 YNDNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGV------LGSGKTWVALDVCL 172
Query: 1134 NEKYVHKFGD--F-----QCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS- 1185
+ K K F CN + ++ Q + + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETV-------------LEMLQKLLYQIDPNWTSRSDH 219
Query: 1186 LAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD--IIVNGVQPPTLNKKL----RVLV---- 1235
+ + +I + + S+ Y ++ +++ VQ ++L+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 1236 ----DFSSPNIAKEMHVGHLRSTIIGD-TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAH 1290
DF S + + H T+ D S LL+YL L
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------- 318
Query: 1291 LQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCV-----VALQRFDPDY 1343
P + + P ++ + ++ +D +K + +L +P
Sbjct: 319 -----PREVLTTNPRRLSIIAESIRDGLATWDN---WKHVNCDKLTTIIESSLNVLEPA- 369
Query: 1344 KKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIM 1403
+++K++DRL+V F +P LL ++
Sbjct: 370 -------------EYRKMFDRLSV--------F-PPSA--HIPT----ILLS------LI 395
Query: 1404 WGEDRGSIPMTIV----------KSDGGFTYDTSDLA-AIRQRIEEEKA--DWIV----- 1445
W + S M +V K T + ++ ++E E A IV
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 1446 ----------------YVTDHRSYH 1454
Y H +H
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHH 480
Score = 63.7 bits (154), Expect = 5e-10
Identities = 90/655 (13%), Positives = 173/655 (26%), Gaps = 244/655 (37%)
Query: 8 LKEFISKVNELSTKGFISESATEDVLAAQLQNTKLKHRLAIL--------QRAIAEEEKK 59
+ F K + K +S+ + ++ ++ + L Q+ + E +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 60 --QGISSSISSQTKGAA--------------------KKMNVPVRDRM--SVRDYL---- 91
+ + S I ++ + + K NV R + +R L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYLKLRQALLELR 148
Query: 92 --SDVFTHAVQVAFPELGD-KTASVAST--NEKYVHKFGD--F-----QCNDAMALCKIF 139
+V V LG KT + K K F CN +
Sbjct: 149 PAKNVLIDGV------LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV---- 198
Query: 140 KDKGEKKNPFDIAQSIASVVTSELATNPS-LAKVIDKIEVAKPGFVNVFLSRVYAGEQIK 198
++ Q + + + + + +I + + S+ Y +
Sbjct: 199 ---------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-----E 244
Query: 199 D--IIVNGVQPPTLNKKL----RVLV--------DFSSPNIAKEMHVGHLRSTIIGD-TI 243
+ +++ VQ ++L+ DF S + + H T+ D
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 244 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKR 301
S LL+YL L P + + P ++ + ++
Sbjct: 305 SLLLKYLDCRPQDL---------------------PREVLTTNPRRLSIIAESIRDGLAT 343
Query: 302 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQ 361
+D W+ + D+L + ES
Sbjct: 344 WDN-------------------------WKHV----------NCDKLTTII----ESSL- 363
Query: 362 KHMEQLVPYLEKKGLLEL---DDGRKI-------MWGEDRGSIPMTIV----------KS 401
L P +K L I +W + S M +V K
Sbjct: 364 ---NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 402 DGGFTYDTSDLA-AIRQRIEEEKA--DWIV---------------------YVTDHRSYH 437
T + ++ ++E E A IV Y H +H
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 438 QVLQAIAEEEK--------------KQGI--------SSSSSSQTKGTAKK------MNV 469
L+ I E+ +Q I +S S T K N
Sbjct: 481 --LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 470 PVRDRMSVRDYLSDVFTHA-----------VQVAFPELGDKTASVASTNEKYVHK 513
P +R+ V L + +++A L + ++ K V +
Sbjct: 539 PKYERL-VNAILDFLPKIEENLICSKYTDLLRIA---LMAEDEAIFEEAHKQVQR 589
Score = 55.2 bits (132), Expect = 2e-07
Identities = 93/611 (15%), Positives = 179/611 (29%), Gaps = 174/611 (28%)
Query: 860 ED--RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVA----- 912
+D + D + +S+ G R L K Q+ V
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM---------VQKFVEEVLRI 89
Query: 913 -YGCI--KYADLSHNRNLD---YVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 966
Y + ++ Y+ D++ +D V+ Y +R+
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPY--------L 138
Query: 967 DLRVAAQSTPVSLEHEKEFA-----------LAKTLLRMNDVLMLV-------------T 1002
LR A L K +A + V + +
Sbjct: 139 KLRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 1003 RDLCLHHLCEYLYDISTAFSEFYDNCYCIE---KDAEGKIKTVHTGRLLLAEATAKVMKK 1059
+ L L + LY I ++ D+ I+ + +++ RLL +K +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLK----SKPYEN 245
Query: 1060 CFDIL-NIRTAIAEEEKKQGISSSISSQTKGAAKKMNVPVRDRMSVRDYLSDVFTHAVQV 1118
C +L N++ A+ +S K+ + R + V D+LS T + +
Sbjct: 246 CLLVLLNVQN--AKAWNAFNLSC-----------KILLTTRFK-QVTDFLSAATTTHISL 291
Query: 1119 AFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNPFDIAQSIA 1173
+ D+ S+ KY+ C+ E NP ++ IA
Sbjct: 292 DHHSMTLTPDEVKSLLL---KYLD-------------CRPQDLPREVLTTNPRRLSI-IA 334
Query: 1174 SVVTSELATNPSLAKV-IDKIEVAKPGFVNVF----LSRVYAGEQIKDIIV--NGVQPPT 1226
+ LAT + V DK+ +NV +++ + V PT
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-----DRLSVFPPSAHIPT 389
Query: 1227 LNKKLRVL----VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 1282
L ++ + + ++H S + + + + +
Sbjct: 390 --ILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 1283 QFGMLIAH--LQDKFPDYLTKSPPIADLQAFYK------ESKKRFDEDEIFKK------- 1327
++ H + F D PP D Q FY ++ + + +F+
Sbjct: 445 LHRSIVDHYNIPKTF-DSDDLIPPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 1328 ---------RAYQCVVA----LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 1374
A+ + LQ+ YK ICD + + + L+
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLK-FYKP---YICDNDPKYERLVNAILD-------- 550
Query: 1375 SFYQKHMEQLV 1385
F K E L+
Sbjct: 551 -FLPKIEENLI 560
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 6e-09
Identities = 72/508 (14%), Positives = 144/508 (28%), Gaps = 165/508 (32%)
Query: 10 EFISKVNELSTK--GFISESATEDVLAAQLQNTKLKHRLAILQRAIAEEEKK--QG---- 61
E + EL K G++ ++ ++ +K+ +L + E E +G
Sbjct: 53 EPTTPA-ELVGKFLGYV---------SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 62 --ISSSISSQTKGAAKKMNVPVRDRMSVRDYLSDVFTHAVQVA------------FPELG 107
+ + K + +++Y+ A +A F +G
Sbjct: 103 ALAAKLLQENDTTLVKTKEL-------IKNYI-----TARIMAKRPFDKKSNSALFRAVG 150
Query: 108 DKTASVAS------TNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF--DIAQSIASVV 159
+ A + + + Y F + + +++ A++++ ++
Sbjct: 151 EGNAQLVAIFGGQGNTDDY---FEELR--------DLYQTYHVLVGDLIKFSAETLSELI 199
Query: 160 TSELATNPSLAKVIDKIE-----VAKPG---FVNVFLSRVYAG-EQIKDIIV----NGVQ 206
+ L + ++ +E P +++ +S G Q+ +V G
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 207 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII--GDTISRLLEYLGHDVVR-LNHVGDW 263
P L L+ S + + I D+ + L +G
Sbjct: 260 PGELRSYLKGATGHSQGLVT---------AVAIAETDSWESFFV-SVRKAITVLFFIG-- 307
Query: 264 GTQFGMLIAHLQDKFP----------DYL-----TKSP-------PIADLQAFYKESKKR 301
+ +P D L SP +Q + ++
Sbjct: 308 --------VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 302 FDEDEIFKKRAY--------QCVVA-----LQRFDPDYKKA-WEMICDVSRRDFQK---- 343
K+ VV+ L + +KA D SR F +
Sbjct: 360 LPAG----KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 344 IYDR-LNVTLTERGESFYQKHMEQLVPYLEK-KGLLELDDGRK-IMWGEDRGSIPMTIVK 400
+R L V F H L L+ D + + + IP V
Sbjct: 416 FSNRFLPVA-----SPF---H----SHLLVPASDLINKDLVKNNVSFNAKDIQIP---VY 460
Query: 401 SDGGFTYDTSDLAAIRQRIEEEKADWIV 428
T+D SDL + I E D I+
Sbjct: 461 D----TFDGSDLRVLSGSISERIVDCII 484
Score = 59.7 bits (144), Expect = 9e-09
Identities = 112/742 (15%), Positives = 194/742 (26%), Gaps = 305/742 (41%)
Query: 192 YAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLG 251
+ Q+++ + PT + + ++P L + ++LG
Sbjct: 28 FIASQLQEQFNKILPEPT--EGFAADDEPTTP--------AEL-----------VGKFLG 66
Query: 252 HDVVRLNHVGDWGTQFGMLIAHLQDKF-PDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 310
+ V L G QF ++ +F YL + D+ A + + D + K
Sbjct: 67 Y-VSSLVEPSKVG-QFDQVLNLCLTEFENCYLEGN----DIHALAAKLLQENDTTLVKTK 120
Query: 311 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD-RLNVTLTERGESFY-----QKHM 364
+ Y A +++R F K + L + E Q +
Sbjct: 121 ELIKN----------YITA----RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 365 EQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKA 424
+ Y E EL R + Y T
Sbjct: 167 D---DYFE-----EL---RDL---------------------YQTY---------HVLVG 185
Query: 425 DWIVYVTDHRSYHQVLQAIAEEEKKQGISSSSSSQTKGTAKKMNVP--VRDRMSV--RDY 480
D I + + L + + T+G +N+ + + + +DY
Sbjct: 186 DLI------KFSAETLSELIRTT-----LDAEKVFTQG----LNILEWLENPSNTPDKDY 230
Query: 481 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 540
L ++ ++ P +G V + + + K+ G P +
Sbjct: 231 LL-----SIPISCPLIG-------------VIQLAHY-----VVTAKLL---G--FTPGE 262
Query: 541 IAQS-----------IASVVTSELATNPSLAKVIDK-IEVAKPGFVNVFLSRVYAG---- 584
+ + +V +E + S + K I V F + G
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-------F----FIGVRCY 311
Query: 585 ----------EQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 634
++D + N P SP M L +I T
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVP-------------SP-----M----L--SISNLTQE 347
Query: 635 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY--LTKSP-------PIADLQAFY 685
++ +Y+ + N +HL L P L
Sbjct: 348 QVQDYVN----KTN-------------SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 686 KESKKRF-----DEDEI-FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 739
+K D+ I F +R + RF P
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSN---RFLP------------------------- 422
Query: 740 VTLTERGESFYQKHMEQLVPYLEK-KGLLELDDGRK-IMWGEDRGSIPMTIVKSDGGFTY 797
V F H L L+ D + + + IP V T+
Sbjct: 423 VA-----SPF---H----SHLLVPASDLINKDLVKNNVSFNAKDIQIP---VYD----TF 463
Query: 798 DTSDLAAIRQRIEEEKADWIV---------------YVTDLGQGVHFRL--LEECAKK-- 838
D SDL + I E D I+ ++ D G G L L K
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 839 ------AGILNPNKTRMDFVGF 854
AG L+ N D GF
Sbjct: 524 GVRVIVAGTLDINPD--DDYGF 543
Score = 59.3 bits (143), Expect = 1e-08
Identities = 96/588 (16%), Positives = 172/588 (29%), Gaps = 177/588 (30%)
Query: 921 LSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR---IASI-ARTAGINSEDLRVAAQSTP 976
LSH +L++V TA + + + + + T G ++D +TP
Sbjct: 11 LSHG-SLEHVLLVP--------TASFFIASQLQEQFNKILPEPTEGFAADD----EPTTP 57
Query: 977 VSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE 1036
L + K L V+ + + ++ ++ +EF +NCY D
Sbjct: 58 AEL-------VGK-------FLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGND-- 100
Query: 1037 GKIKTVHT-GRLLLAEATAKVMKKCFDILNIRTAI-AEEEKKQGISSSISSQTKGAAKKM 1094
+H LL E ++K ++ I+ I A K+ +S A +
Sbjct: 101 -----IHALAAKLLQENDTTLVKT-KEL--IKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 1095 NVPVRDRMSV-------RDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 1147
N + +++ DY F EL + Y GD
Sbjct: 153 NAQL---VAIFGGQGNTDDY------------FEEL-------RDLYQTYHVLVGDLIKF 190
Query: 1148 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 1207
A L ++ + + + F +I + + + P + I ++ P + +
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENP-SNTPDKD-YLLSIPISCPL---IGVI- 244
Query: 1208 VYAGEQIKDIIV----NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII--GDTIS 1261
Q+ +V G P L L+ S + + I D+
Sbjct: 245 -----QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT---------AVAIAETDSWE 290
Query: 1262 RLLEYLGHDVVR-LNHVGDWGTQFGMLIAHLQDKFP----------DYL-----TKSP-- 1303
+ L +G + +P D L SP
Sbjct: 291 SFFV-SVRKAITVLFFIG----------VRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 1304 -----PIADLQAFYKESKKRFDEDEIFKKRAY--------QCVVA-----LQRFDPDYKK 1345
+Q + ++ K+ VV+ L + +K
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAG----KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 1346 A-WEMICDVSRRDFQK----IYDR-LNVTLTERGESFYQKHMEQLVPYLEK-KGLLELDD 1398
A D SR F + +R L V F H L L+ D
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVA-----SPF---H----SHLLVPASDLINKDL 443
Query: 1399 GRK-IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 1445
+ + + IP V T+D SDL + I E D I+
Sbjct: 444 VKNNVSFNAKDIQIP---VYD----TFDGSDLRVLSGSISERIVDCII 484
Score = 45.8 bits (108), Expect = 1e-04
Identities = 58/333 (17%), Positives = 93/333 (27%), Gaps = 156/333 (46%)
Query: 654 GTQF-GM---LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE-DEIFKKRAYQCVVA 708
G+Q GM L Y K+ A + ++ D FK ++
Sbjct: 1625 GSQEQGMGMDL----------Y--KTSKAA---------QDVWNRADNHFKDTYGFSILD 1663
Query: 709 LQRFDP-----------------DYKK-AWEMICDVSRRDFQKIYDRLNVTLT------E 744
+ +P +Y +E I D + +KI+ +N T E
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 745 RGE----SFYQKHMEQLVP-----------YLEKKGLLELDDGRKIMWG----------- 778
+G F Q P L+ KGL+ D G
Sbjct: 1723 KGLLSATQFTQ-------PALTLMEKAAFEDLKSKGLIPADA---TFAGHSLGEYAALAS 1772
Query: 779 -------ED-------RGSIPMTIVKSD--GGFTYDTSDLAAIR-QRI----EEEKADWI 817
E RG V D G Y + AI R+ +E ++
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG---MIAINPGRVAASFSQEALQYV 1829
Query: 818 VYVTDLGQGVHFRLLEECAKKAG----ILN---PNKTRMDFVGFGVVL-GEDR------- 862
V E K+ G I+N N+ V G+ R
Sbjct: 1830 V--------------ERVGKRTGWLVEIVNYNVENQQ--------YVAAGDLRALDTVTN 1867
Query: 863 --KKFKTRSGDTVKLSELLDEGLRRSLDKLKDK 893
K + D ++L + L SL++++
Sbjct: 1868 VLNFIKLQKIDIIELQKSL------SLEEVEGH 1894
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 40.3 bits (95), Expect = 0.004
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH + + D + RL GH V
Sbjct: 54 HLGHAATYLTFDLVHRLWLDAGHTV 78
Score = 40.3 bits (95), Expect = 0.004
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH + + D + RL GH V
Sbjct: 54 HLGHAATYLTFDLVHRLWLDAGHTV 78
Score = 40.3 bits (95), Expect = 0.004
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH + + D + RL GH V
Sbjct: 54 HLGHAATYLTFDLVHRLWLDAGHTV 78
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 40.3 bits (95), Expect = 0.004
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV--VR 256
H+G+ R+ I GD + + L +LG+ V
Sbjct: 57 HIGNFRTYIFGDLLIKTLRFLGYKVNYAM 85
Score = 40.3 bits (95), Expect = 0.004
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV--VR 646
H+G+ R+ I GD + + L +LG+ V
Sbjct: 57 HIGNFRTYIFGDLLIKTLRFLGYKVNYAM 85
Score = 40.3 bits (95), Expect = 0.004
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV--VR 1273
H+G+ R+ I GD + + L +LG+ V
Sbjct: 57 HIGNFRTYIFGDLLIKTLRFLGYKVNYAM 85
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 39.8 bits (94), Expect = 0.006
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV--VR 256
H+GH R+ + D ++R L +LG+ + VR
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLKYVR 65
Score = 39.8 bits (94), Expect = 0.006
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV--VR 646
H+GH R+ + D ++R L +LG+ + VR
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLKYVR 65
Score = 39.8 bits (94), Expect = 0.006
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV--VR 1273
H+GH R+ + D ++R L +LG+ + VR
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLKYVR 65
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 39.1 bits (92), Expect = 0.009
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV--VR 256
H+GH RS II D + R L G++V VR
Sbjct: 40 HIGHGRSWIIFDMVVRYLRMRGYEVTFVR 68
Score = 39.1 bits (92), Expect = 0.009
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV--VR 646
H+GH RS II D + R L G++V VR
Sbjct: 40 HIGHGRSWIIFDMVVRYLRMRGYEVTFVR 68
Score = 39.1 bits (92), Expect = 0.009
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV--VR 1273
H+GH RS II D + R L G++V VR
Sbjct: 40 HIGHGRSWIIFDMVVRYLRMRGYEVTFVR 68
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 32.9 bits (76), Expect = 1.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 229 MHVGHLRSTIIGDTISRLLEYLGHDV 254
+H+GH+R+ IGD I+R LG +V
Sbjct: 68 LHMGHVRNYTIGDVIARYQRMLGKNV 93
Score = 32.9 bits (76), Expect = 1.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 619 MHVGHLRSTIIGDTISRLLEYLGHDV 644
+H+GH+R+ IGD I+R LG +V
Sbjct: 68 LHMGHVRNYTIGDVIARYQRMLGKNV 93
Score = 32.9 bits (76), Expect = 1.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1246 MHVGHLRSTIIGDTISRLLEYLGHDV 1271
+H+GH+R+ IGD I+R LG +V
Sbjct: 68 LHMGHVRNYTIGDVIARYQRMLGKNV 93
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 32.5 bits (73), Expect = 1.0
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 360 YQKHMEQLVPYLEKK------GLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLA 413
Y + M +VP + K G+ + + G +
Sbjct: 16 YGRVMRAIVPRISKAHEVIVFGIHAFGRS----VHANIEEFDAQTAEHVRGLNEQGFYYS 71
Query: 414 AIRQRIEEEKADWIVYVTDHRSYHQVLQAIAEEEKKQGI 452
+ + I+ K D ++ D L A+ + + I
Sbjct: 72 GLSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKI 110
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 32.9 bits (76), Expect = 1.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 229 MHVGHLRSTIIGDTISRLLEYLGHDV 254
+H+GHL++ +GD ++R G++V
Sbjct: 48 LHMGHLKNYTMGDVLARFRRMQGYEV 73
Score = 32.9 bits (76), Expect = 1.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 619 MHVGHLRSTIIGDTISRLLEYLGHDV 644
+H+GHL++ +GD ++R G++V
Sbjct: 48 LHMGHLKNYTMGDVLARFRRMQGYEV 73
Score = 32.9 bits (76), Expect = 1.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 1246 MHVGHLRSTIIGDTISRLLEYLGHDV 1271
+H+GHL++ +GD ++R G++V
Sbjct: 48 LHMGHLKNYTMGDVLARFRRMQGYEV 73
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 32.7 bits (74), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH+ ST+I D I R G V
Sbjct: 25 HIGHVYSTLITDVIGRYHRVKGERV 49
Score = 32.7 bits (74), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH+ ST+I D I R G V
Sbjct: 25 HIGHVYSTLITDVIGRYHRVKGERV 49
Score = 32.7 bits (74), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH+ ST+I D I R G V
Sbjct: 25 HIGHVYSTLITDVIGRYHRVKGERV 49
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 32.3 bits (74), Expect = 1.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH+ ST+I D + R G +V
Sbjct: 42 HIGHVYSTLIVDVLGRYHRVKGEEV 66
Score = 32.3 bits (74), Expect = 1.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH+ ST+I D + R G +V
Sbjct: 42 HIGHVYSTLIVDVLGRYHRVKGEEV 66
Score = 32.3 bits (74), Expect = 1.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH+ ST+I D + R G +V
Sbjct: 42 HIGHVYSTLIVDVLGRYHRVKGEEV 66
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei}
Length = 182
Score = 30.7 bits (69), Expect = 2.6
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 10/110 (9%)
Query: 180 KPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 239
KPG + + + + E+I + + G + V + A + +
Sbjct: 39 KPGVTHFTMRKSHGDEEII-LQLTGEDRSNEEITRTLDVLVVNGGKALVFGMSVEDGEFV 97
Query: 240 GDTISRLLEYLGHDVVRLNHVGDW-------GTQFGMLIAHLQDKFPDYL 282
+ + + G + + + G L HL D F YL
Sbjct: 98 INNVC--FRHDGKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYL 145
Score = 30.7 bits (69), Expect = 2.6
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 10/110 (9%)
Query: 570 KPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 629
KPG + + + + E+I + + G + V + A + +
Sbjct: 39 KPGVTHFTMRKSHGDEEII-LQLTGEDRSNEEITRTLDVLVVNGGKALVFGMSVEDGEFV 97
Query: 630 GDTISRLLEYLGHDVVRLNHVGDW-------GTQFGMLIAHLQDKFPDYL 672
+ + + G + + + G L HL D F YL
Sbjct: 98 INNVC--FRHDGKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYL 145
Score = 30.7 bits (69), Expect = 2.6
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 10/110 (9%)
Query: 1197 KPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 1256
KPG + + + + E+I + + G + V + A + +
Sbjct: 39 KPGVTHFTMRKSHGDEEII-LQLTGEDRSNEEITRTLDVLVVNGGKALVFGMSVEDGEFV 97
Query: 1257 GDTISRLLEYLGHDVVRLNHVGDW-------GTQFGMLIAHLQDKFPDYL 1299
+ + + G + + + G L HL D F YL
Sbjct: 98 INNVC--FRHDGKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYL 145
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 2.8
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 17/44 (38%)
Query: 195 EQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 238
+ +K L L++ D S+P +A +++T+
Sbjct: 20 QALK----------KLQASLKLYADDSAPALA-------IKATM 46
Score = 30.3 bits (67), Expect = 2.8
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 17/44 (38%)
Query: 585 EQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 628
+ +K L L++ D S+P +A +++T+
Sbjct: 20 QALK----------KLQASLKLYADDSAPALA-------IKATM 46
Score = 30.3 bits (67), Expect = 2.8
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 17/44 (38%)
Query: 1212 EQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 1255
+ +K L L++ D S+P +A +++T+
Sbjct: 20 QALK----------KLQASLKLYADDSAPALA-------IKATM 46
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 31.0 bits (69), Expect = 3.6
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV--------------VRLNHVGDWGTQFGMLIAHLQ 275
HVG+ R + L G++V V N +W GM I+ +
Sbjct: 35 HVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVP 94
Query: 276 DKFPDYLT 283
D + + +
Sbjct: 95 DPWGCHES 102
Score = 31.0 bits (69), Expect = 3.6
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV--------------VRLNHVGDWGTQFGMLIAHLQ 665
HVG+ R + L G++V V N +W GM I+ +
Sbjct: 35 HVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVP 94
Query: 666 DKFPDYLT 673
D + + +
Sbjct: 95 DPWGCHES 102
Score = 31.0 bits (69), Expect = 3.6
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV--------------VRLNHVGDWGTQFGMLIAHLQ 1292
HVG+ R + L G++V V N +W GM I+ +
Sbjct: 35 HVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVP 94
Query: 1293 DKFPDYLT 1300
D + + +
Sbjct: 95 DPWGCHES 102
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 31.1 bits (70), Expect = 3.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 229 MHVGHLRSTIIGDTISRLLEYLGHDV 254
+HVGH R+ I D I+R G++V
Sbjct: 49 LHVGHARTYTIPDVIARFKRMQGYNV 74
Score = 31.1 bits (70), Expect = 3.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 619 MHVGHLRSTIIGDTISRLLEYLGHDV 644
+HVGH R+ I D I+R G++V
Sbjct: 49 LHVGHARTYTIPDVIARFKRMQGYNV 74
Score = 31.1 bits (70), Expect = 3.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1246 MHVGHLRSTIIGDTISRLLEYLGHDV 1271
+HVGH R+ I D I+R G++V
Sbjct: 49 LHVGHARTYTIPDVIARFKRMQGYNV 74
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 30.7 bits (70), Expect = 3.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH +T++ D ++R G+
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRT 43
Score = 30.7 bits (70), Expect = 3.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH +T++ D ++R G+
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRT 43
Score = 30.7 bits (70), Expect = 3.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH +T++ D ++R G+
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRT 43
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 30.7 bits (70), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH I D I+R G+DV
Sbjct: 28 HIGHAYEYIATDAIARFKRLDGYDV 52
Score = 30.7 bits (70), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH I D I+R G+DV
Sbjct: 28 HIGHAYEYIATDAIARFKRLDGYDV 52
Score = 30.7 bits (70), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH I D I+R G+DV
Sbjct: 28 HIGHAYEYIATDAIARFKRLDGYDV 52
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal
binding protein, structural genomics, NPPSFA; 2.21A
{Pyrococcus horikoshii}
Length = 342
Score = 30.6 bits (68), Expect = 3.9
Identities = 22/176 (12%), Positives = 54/176 (30%), Gaps = 16/176 (9%)
Query: 159 VTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT---LNKKLR 215
T+ + TN ++ + ++++ +++S + + + + P + + L
Sbjct: 171 FTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLE 230
Query: 216 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 275
++ D + + + V ++L+ V G L
Sbjct: 231 LMRDLPTRTVVRLTLVKGENMHSPEK-YAKLILKARPMFVEAKAYMFVGYSRNRLT---- 285
Query: 276 DKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR--FDPDYKKA 329
+ P D++ F + K I + VV + R DP
Sbjct: 286 ------INNMPSHQDIREFAEALVKHLPGYHIEDEYEPSRVVLIMRDDVDPQGTGV 335
Score = 30.6 bits (68), Expect = 3.9
Identities = 22/176 (12%), Positives = 54/176 (30%), Gaps = 16/176 (9%)
Query: 549 VTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT---LNKKLR 605
T+ + TN ++ + ++++ +++S + + + + P + + L
Sbjct: 171 FTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLE 230
Query: 606 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 665
++ D + + + V ++L+ V G L
Sbjct: 231 LMRDLPTRTVVRLTLVKGENMHSPEK-YAKLILKARPMFVEAKAYMFVGYSRNRLT---- 285
Query: 666 DKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR--FDPDYKKA 719
+ P D++ F + K I + VV + R DP
Sbjct: 286 ------INNMPSHQDIREFAEALVKHLPGYHIEDEYEPSRVVLIMRDDVDPQGTGV 335
Score = 30.6 bits (68), Expect = 3.9
Identities = 22/176 (12%), Positives = 54/176 (30%), Gaps = 16/176 (9%)
Query: 1176 VTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT---LNKKLR 1232
T+ + TN ++ + ++++ +++S + + + + P + + L
Sbjct: 171 FTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLE 230
Query: 1233 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 1292
++ D + + + V ++L+ V G L
Sbjct: 231 LMRDLPTRTVVRLTLVKGENMHSPEK-YAKLILKARPMFVEAKAYMFVGYSRNRLT---- 285
Query: 1293 DKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR--FDPDYKKA 1346
+ P D++ F + K I + VV + R DP
Sbjct: 286 ------INNMPSHQDIREFAEALVKHLPGYHIEDEYEPSRVVLIMRDDVDPQGTGV 335
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 30.7 bits (70), Expect = 4.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH I D ++R G DV
Sbjct: 41 HIGHAYELIATDAMARFQRLNGMDV 65
Score = 30.7 bits (70), Expect = 4.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH I D ++R G DV
Sbjct: 41 HIGHAYELIATDAMARFQRLNGMDV 65
Score = 30.7 bits (70), Expect = 4.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH I D ++R G DV
Sbjct: 41 HIGHAYELIATDAMARFQRLNGMDV 65
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 30.7 bits (70), Expect = 4.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 230 HVGHLRSTIIGDTISRLLEYLGHDV 254
H+GH +TI DTI+R +DV
Sbjct: 21 HLGHAYTTIAADTIARYYRLRDYDV 45
Score = 30.7 bits (70), Expect = 4.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 620 HVGHLRSTIIGDTISRLLEYLGHDV 644
H+GH +TI DTI+R +DV
Sbjct: 21 HLGHAYTTIAADTIARYYRLRDYDV 45
Score = 30.7 bits (70), Expect = 4.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1247 HVGHLRSTIIGDTISRLLEYLGHDV 1271
H+GH +TI DTI+R +DV
Sbjct: 21 HLGHAYTTIAADTIARYYRLRDYDV 45
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes,
cation-PI interactions, classical hydrogen bonds,
protein binding; 1.80A {Archaeoglobus fulgidus} SCOP:
c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Length = 275
Score = 30.2 bits (68), Expect = 5.3
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 236 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY--------LTKSPP 287
I+ + I+ LLE G+ +G + L + + +Y L K PP
Sbjct: 18 QYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPP 77
Query: 288 -IADLQAFYKESKKRFDE 304
+ D Q + E KK E
Sbjct: 78 ELWDQQYIFDEVKKGLLE 95
Score = 30.2 bits (68), Expect = 5.3
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 626 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY--------LTKSPP 677
I+ + I+ LLE G+ +G + L + + +Y L K PP
Sbjct: 18 QYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPP 77
Query: 678 -IADLQAFYKESKKRFDE 694
+ D Q + E KK E
Sbjct: 78 ELWDQQYIFDEVKKGLLE 95
Score = 30.2 bits (68), Expect = 5.3
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 1253 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY--------LTKSPP 1304
I+ + I+ LLE G+ +G + L + + +Y L K PP
Sbjct: 18 QYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPP 77
Query: 1305 -IADLQAFYKESKKRFDE 1321
+ D Q + E KK E
Sbjct: 78 ELWDQQYIFDEVKKGLLE 95
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 30.3 bits (68), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 229 MHVGHLRSTIIGDTISRLLEYLGHDVVR 256
+HVGH R+ I D I+R G++V+
Sbjct: 49 LHVGHARTYTIPDVIARFKRMQGYNVLF 76
Score = 30.3 bits (68), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 619 MHVGHLRSTIIGDTISRLLEYLGHDVVR 646
+HVGH R+ I D I+R G++V+
Sbjct: 49 LHVGHARTYTIPDVIARFKRMQGYNVLF 76
Score = 30.3 bits (68), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1246 MHVGHLRSTIIGDTISRLLEYLGHDVVR 1273
+HVGH R+ I D I+R G++V+
Sbjct: 49 LHVGHARTYTIPDVIARFKRMQGYNVLF 76
>1kor_A Argininosuccinate synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: ANP ARG; 1.95A {Thermus thermophilus}
SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A
1kh2_A* 1kh3_A* 1j20_A*
Length = 400
Score = 29.8 bits (68), Expect = 8.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 798 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGI 841
DTS ++ E +A+ I + D+GQG E A + G
Sbjct: 12 DTS--IILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGA 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 22,849,258
Number of extensions: 1487009
Number of successful extensions: 4404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4274
Number of HSP's successfully gapped: 126
Length of query: 1458
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1352
Effective length of database: 3,742,167
Effective search space: 5059409784
Effective search space used: 5059409784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.4 bits)