RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15414
(1458 letters)
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 241 bits (616), Expect = 1e-71
Identities = 94/353 (26%), Positives = 148/353 (41%), Gaps = 19/353 (5%)
Query: 600 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 659
L + +V+++FSSPNIAK H GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+
Sbjct: 4 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGL 63
Query: 660 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED-------EIFKKRAYQCVVALQRF 712
L + + PI L Y K +E+ + +A + ++
Sbjct: 64 LAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG 123
Query: 713 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKH--MEQLVPYLEKKGLLELD 770
D + K W+ + S + Y RLN+ M + + ++KGL D
Sbjct: 124 DEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHED 183
Query: 771 DGRKIMWGEDRGSIP--MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 828
G ++ + KSDG Y T D+ A R E+ D ++YV Q +H
Sbjct: 184 KGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLH 243
Query: 829 FRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLD 888
E K+ G + G + TR G V L +L+E + +
Sbjct: 244 AAQFFEILKQMGFEWAKDLQHVNFGM-------VQGMSTRKGTVVFLDNILEETKEKMHE 296
Query: 889 KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 941
+K KN + E V + D+ R +Y F +++ML G
Sbjct: 297 VMK-KNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG 348
Score = 166 bits (420), Expect = 1e-45
Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 11/250 (4%)
Query: 210 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 269
L + +V+++FSSPNIAK H GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+
Sbjct: 4 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGL 63
Query: 270 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED-------EIFKKRAYQCVVALQRF 322
L + + PI L Y K +E+ + +A + ++
Sbjct: 64 LAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG 123
Query: 323 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKH--MEQLVPYLEKKGLLELD 380
D + K W+ + S + Y RLN+ M + + ++KGL D
Sbjct: 124 DEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHED 183
Query: 381 DGRKIMWGEDRGSIP--MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRSYHQ 438
G ++ + KSDG Y T D+ A R E+ D ++YV +
Sbjct: 184 KGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLH 243
Query: 439 VLQAIAEEEK 448
Q ++
Sbjct: 244 AAQFFEILKQ 253
Score = 164 bits (416), Expect = 5e-45
Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 11/243 (4%)
Query: 1227 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 1286
L + +V+++FSSPNIAK H GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+
Sbjct: 4 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGL 63
Query: 1287 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED-------EIFKKRAYQCVVALQRF 1339
L + + PI L Y K +E+ + +A + ++
Sbjct: 64 LAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG 123
Query: 1340 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKH--MEQLVPYLEKKGLLELD 1397
D + K W+ + S + Y RLN+ M + + ++KGL D
Sbjct: 124 DEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHED 183
Query: 1398 DGRKIMWGEDRGSIP--MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDHRSYHQ 1455
G ++ + KSDG Y T D+ A R E+ D ++YV +
Sbjct: 184 KGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLH 243
Query: 1456 VLQ 1458
Q
Sbjct: 244 AAQ 246
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 226 bits (576), Expect = 5e-66
Identities = 77/378 (20%), Positives = 139/378 (36%), Gaps = 47/378 (12%)
Query: 598 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 657
P + VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 1 PFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQA 60
Query: 658 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 717
+ L+ + K Y + E E + + + AL+R + +
Sbjct: 61 AETLFALRHYGLTWDGKEKYDHFAGRAYVR-LHQDPEYERLQPAIEEVLHALERGELREE 119
Query: 718 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIM- 776
++ ++ L V ++ +++ + LE+ + K
Sbjct: 120 VNRILLAQMATMHALNARYDLLVWESDI---VRAGLLQKALALLEQSPHVFRPREGKYAG 176
Query: 777 --------WGEDRGSIPMTIVKSDGGFTYDTSDLA------------------------- 803
+++S+G TY D+A
Sbjct: 177 ALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGL 236
Query: 804 ---AIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGE 860
A KA+ + V D+ Q L+ AG + + + VL E
Sbjct: 237 RTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGY-PALAEKAHHLAYETVLLE 295
Query: 861 DRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYAD 920
R + R G V + E+L+E RR+ +++KN + EA + VA G I+++
Sbjct: 296 GR-QMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHP----DKEEAARMVALGAIRFSM 350
Query: 921 LSHNRNLDYVFSFDKMLD 938
+ F + + L
Sbjct: 351 VKTEPKKQIDFRYQEALS 368
Score = 146 bits (368), Expect = 2e-38
Identities = 58/340 (17%), Positives = 114/340 (33%), Gaps = 43/340 (12%)
Query: 208 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 267
P + VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 1 PFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQA 60
Query: 268 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 327
+ L+ + K Y + E E + + + AL+R + +
Sbjct: 61 AETLFALRHYGLTWDGKEKYDHFAGRAYVR-LHQDPEYERLQPAIEEVLHALERGELREE 119
Query: 328 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIM- 386
++ ++ L V ++ +++ + LE+ + K
Sbjct: 120 VNRILLAQMATMHALNARYDLLVWESDI---VRAGLLQKALALLEQSPHVFRPREGKYAG 176
Query: 387 --------WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI----------- 427
+++S+G TY D+A ++ +
Sbjct: 177 ALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGL 236
Query: 428 -VYVTDHRSYHQV--------------LQAIAEEEKKQGISSSSSSQTKGTAKKMNVPVR 472
+ +Y QA+ + + + A + +
Sbjct: 237 RTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEG 296
Query: 473 DRMSVRD----YLSDVFTHAVQVAFPELGDKTASVASTNE 508
+MS R + +V A + A + +K E
Sbjct: 297 RQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEE 336
Score = 146 bits (368), Expect = 2e-38
Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 13/229 (5%)
Query: 1225 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 1284
P + VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 1 PFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQA 60
Query: 1285 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 1344
+ L+ + K Y + E E + + + AL+R + +
Sbjct: 61 AETLFALRHYGLTWDGKEKYDHFAGRAYVR-LHQDPEYERLQPAIEEVLHALERGELREE 119
Query: 1345 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIM- 1403
++ ++ L V ++ +++ + LE+ + K
Sbjct: 120 VNRILLAQMATMHALNARYDLLVWESDI---VRAGLLQKALALLEQSPHVFRPREGKYAG 176
Query: 1404 --------WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 1444
+++S+G TY D+A ++ +
Sbjct: 177 ALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRF 225
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 94.3 bits (234), Expect = 3e-23
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 942 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1001
+T YL YA++R+ S+ R A +++ + L+ L + L + DVL
Sbjct: 1 DTGPYLQYAHSRLRSVERNASGITQEK--WINADFSLLKEPAAKLLIRLLGQYPDVLRNA 58
Query: 1002 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1061
+ + YL+ ++ S YD + + E + T RL L A +V+
Sbjct: 59 IKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEE-----LATARLALYGAARQVLYNGM 113
Query: 1062 DILNIRT 1068
+L +
Sbjct: 114 RLLGLTP 120
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 90.1 bits (223), Expect = 8e-22
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 941 GNTAVYLLYAYTRIASIARTAG-INSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 999
G+T Y+ YA+ R SI R AG + DL S E ALA LL + ++
Sbjct: 1 GDTGPYVQYAHARAHSILRKAGEWGAPDL---------SQATPYERALALDLLDFEEAVL 51
Query: 1000 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE--GKIKTVHTGRLLLAEATAKVM 1057
+ H L +YL D++ +++ +Y+ + + + RL L ++ + +
Sbjct: 52 EAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTL 111
Query: 1058 KKCFDILNIRT 1068
D+L I
Sbjct: 112 ATGLDLLGIPA 122
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 74.0 bits (180), Expect = 2e-14
Identities = 40/299 (13%), Positives = 89/299 (29%), Gaps = 14/299 (4%)
Query: 589 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 648
D I + + K+ V+ +P+ +HVG+ R + L G++V ++
Sbjct: 4 DYIADKIIRERGEKEKYVVESGITPS--GYVHVGNFRELFTAYIVGHALRDKGYEVRHIH 61
Query: 649 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 708
D+ + ++ ++ DYL ES + ++ +
Sbjct: 62 MWDDYDRFRKVP-RNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEV 120
Query: 709 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHM------EQLVPYLE 762
+ + K E ++ R F+K + + R + P
Sbjct: 121 DLLYASELYKRGEYSEEI-RLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHR 179
Query: 763 KKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 822
++ + DG + + + G +R +
Sbjct: 180 REAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHL 239
Query: 823 LGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDE 881
+ + E + G P +FVG + + K G+ + LS+L +
Sbjct: 240 VAGSSYDTGKEIIKEVYGKEAPLSLMYEFVG----IKGQKGKMSGSKGNVILLSDLYEV 294
Score = 59.0 bits (141), Expect = 1e-09
Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 9/216 (4%)
Query: 199 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 258
D I + + K+ V+ +P+ +HVG+ R + L G++V ++
Sbjct: 4 DYIADKIIRERGEKEKYVVESGITPS--GYVHVGNFRELFTAYIVGHALRDKGYEVRHIH 61
Query: 259 HVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 316
D+ + ++ ++ DYL S ++ + E ++ V
Sbjct: 62 MWDDYDRFRKVP-RNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEV 120
Query: 317 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 376
L + + + ++ KI + LN + ++ + Y +
Sbjct: 121 DLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRR 180
Query: 377 ----LELDDGRKIMWGEDRGSIPMTIVKSDGGFTYD 408
+E D G K+ + G ++S
Sbjct: 181 EAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRW 216
Score = 59.0 bits (141), Expect = 1e-09
Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 9/216 (4%)
Query: 1216 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 1275
D I + + K+ V+ +P+ +HVG+ R + L G++V ++
Sbjct: 4 DYIADKIIRERGEKEKYVVESGITPS--GYVHVGNFRELFTAYIVGHALRDKGYEVRHIH 61
Query: 1276 HVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 1333
D+ + ++ ++ DYL S ++ + E ++ V
Sbjct: 62 MWDDYDRFRKVP-RNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEV 120
Query: 1334 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 1393
L + + + ++ KI + LN + ++ + Y +
Sbjct: 121 DLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRR 180
Query: 1394 ----LELDDGRKIMWGEDRGSIPMTIVKSDGGFTYD 1425
+E D G K+ + G ++S
Sbjct: 181 EAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRW 216
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 58.0 bits (139), Expect = 3e-09
Identities = 30/263 (11%), Positives = 74/263 (28%), Gaps = 15/263 (5%)
Query: 619 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 678
H+GH R+ + D ++R L +LG+ + + ++ D + + +
Sbjct: 36 CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANE-NGESFVAMVDRMIA 94
Query: 679 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 738
+ F + R D + + + ++ DV
Sbjct: 95 EMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDV-----MFDVPTD 149
Query: 739 NVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYD 798
+ Q V ++ K + ++W + P G
Sbjct: 150 PTYGVLSRQDLDQLQAGARVDVVDDKR----NPMDFVLWKMSKEGEPSWPSPWGAGRPGW 205
Query: 799 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 858
+ +A+ + D +D E + +++ ++
Sbjct: 206 HIECSAMNCKQLGNHFDIHGGGSD-----LMFPHHENEIAQSTCAHDGQYVNYWMHSGMV 260
Query: 859 GEDRKKFKTRSGDTVKLSELLDE 881
DR+K G+ + ++L
Sbjct: 261 MVDREKMSKSLGNFFTVRDVLKY 283
Score = 53.0 bits (126), Expect = 1e-07
Identities = 25/211 (11%), Positives = 58/211 (27%), Gaps = 10/211 (4%)
Query: 229 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 288
H+GH R+ + D ++R L +LG+ + + ++ D + + +
Sbjct: 36 CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANE-NGESFVAMVDRMIA 94
Query: 289 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 348
+ F + R D + + + ++ DV
Sbjct: 95 EMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDV-----MFDVPTD 149
Query: 349 NVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYD 408
+ Q V ++ K + ++W + P G
Sbjct: 150 PTYGVLSRQDLDQLQAGARVDVVDDKR----NPMDFVLWKMSKEGEPSWPSPWGAGRPGW 205
Query: 409 TSDLAAIRQRIEEEKADWIVYVTDHRSYHQV 439
+ +A+ + D +D H
Sbjct: 206 HIECSAMNCKQLGNHFDIHGGGSDLMFPHHE 236
Score = 53.0 bits (126), Expect = 1e-07
Identities = 25/211 (11%), Positives = 58/211 (27%), Gaps = 10/211 (4%)
Query: 1246 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 1305
H+GH R+ + D ++R L +LG+ + + ++ D + + +
Sbjct: 36 CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANE-NGESFVAMVDRMIA 94
Query: 1306 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 1365
+ F + R D + + + ++ DV
Sbjct: 95 EMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDV-----MFDVPTD 149
Query: 1366 NVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYD 1425
+ Q V ++ K + ++W + P G
Sbjct: 150 PTYGVLSRQDLDQLQAGARVDVVDDKR----NPMDFVLWKMSKEGEPSWPSPWGAGRPGW 205
Query: 1426 TSDLAAIRQRIEEEKADWIVYVTDHRSYHQV 1456
+ +A+ + D +D H
Sbjct: 206 HIECSAMNCKQLGNHFDIHGGGSDLMFPHHE 236
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS),
N-terminal 'additional' domain {Thermus thermophilus
[TaxId: 274]}
Length = 96
Score = 47.9 bits (114), Expect = 2e-07
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 91 LSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 149
L A+ A E+G VA + K GD+ AL K + K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQ 52
Query: 150 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 197
IAQ + L + + + G++N L +
Sbjct: 53 AIAQELKD----RLPLPEFVEEAV-----PVGGYLNFRLRTEALLREA 91
Score = 47.9 bits (114), Expect = 2e-07
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 481 LSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 539
L A+ A E+G VA + K GD+ AL K + K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQ 52
Query: 540 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 587
IAQ + L + + + G++N L +
Sbjct: 53 AIAQELKD----RLPLPEFVEEAV-----PVGGYLNFRLRTEALLREA 91
Score = 47.9 bits (114), Expect = 2e-07
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 1108 LSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 1166
L A+ A E+G VA + K GD+ AL K + K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQ 52
Query: 1167 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 1214
IAQ + L + + + G++N L +
Sbjct: 53 AIAQELKD----RLPLPEFVEEAV-----PVGGYLNFRLRTEALLREA 91
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 47.6 bits (112), Expect = 8e-06
Identities = 33/234 (14%), Positives = 68/234 (29%), Gaps = 12/234 (5%)
Query: 593 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN---H 649
N + K ++ PN+ +H+GH + D + R G + V L H
Sbjct: 23 NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82
Query: 650 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 709
G + + K L + + + + +ES + K+
Sbjct: 83 AGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQ--LKRLGASA---- 136
Query: 710 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 769
+ + E R F + Y R ++ + L +
Sbjct: 137 -DWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETC--SR 193
Query: 770 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 823
+ + M + + D+A + +R ++ DW+ V D
Sbjct: 194 CGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDW 247
Score = 47.6 bits (112), Expect = 9e-06
Identities = 33/233 (14%), Positives = 68/233 (29%), Gaps = 12/233 (5%)
Query: 203 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN---H 259
N + K ++ PN+ +H+GH + D + R G + V L H
Sbjct: 23 NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82
Query: 260 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 319
G + + K L + + + + +ES + K+
Sbjct: 83 AGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQ--LKRLGASA---- 136
Query: 320 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 379
+ + E R F + Y R ++ + L +
Sbjct: 137 -DWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETC--SR 193
Query: 380 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 432
+ + M + + D+A + +R ++ DW+ V D
Sbjct: 194 CGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKD 246
Score = 47.6 bits (112), Expect = 9e-06
Identities = 33/233 (14%), Positives = 68/233 (29%), Gaps = 12/233 (5%)
Query: 1220 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN---H 1276
N + K ++ PN+ +H+GH + D + R G + V L H
Sbjct: 23 NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82
Query: 1277 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 1336
G + + K L + + + + +ES + K+
Sbjct: 83 AGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQ--LKRLGASA---- 136
Query: 1337 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 1396
+ + E R F + Y R ++ + L +
Sbjct: 137 -DWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETC--SR 193
Query: 1397 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 1449
+ + M + + D+A + +R ++ DW+ V D
Sbjct: 194 CGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKD 246
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 45.8 bits (107), Expect = 3e-05
Identities = 37/304 (12%), Positives = 85/304 (27%), Gaps = 36/304 (11%)
Query: 613 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL---NHVGD----------------- 652
+ E H+GH +T++ D ++R G+ L + G+
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFV 71
Query: 653 --WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 710
+F L + D++ + + KK ++ +I+
Sbjct: 72 DRVSGRFKRAWDLLGIAYDDFIRTTEERHK-KVVQLVLKKVYEAGDIYYGEYEGLYCVSC 130
Query: 711 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 770
K+ E +C + R ++ + E+ + Q+++++ + +G
Sbjct: 131 ERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV 190
Query: 771 DGRKIMWGEDRGSIPMTIV-------------KSDGGFTYDTSDLAAIRQRIEEEKADWI 817
D + F + ++A+ E +
Sbjct: 191 LAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFW 250
Query: 818 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 877
+ L + G +LG D +K G+ V
Sbjct: 251 PHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFA 310
Query: 878 LLDE 881
LL++
Sbjct: 311 LLEK 314
Score = 45.4 bits (106), Expect = 3e-05
Identities = 21/174 (12%), Positives = 47/174 (27%), Gaps = 15/174 (8%)
Query: 223 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL 282
+ E H+GH +T++ D ++R G+ + + G +
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTF---FLTGT-DEHGETVYRAAQA----- 62
Query: 283 TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQ 342
P A + K+ +D I + + +KK +++
Sbjct: 63 AGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRT------TEERHKKVVQLVLKKVYEAGD 116
Query: 343 KIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPM 396
Y E FY + +E + ++ +
Sbjct: 117 IYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWL 170
Score = 45.4 bits (106), Expect = 3e-05
Identities = 21/174 (12%), Positives = 47/174 (27%), Gaps = 15/174 (8%)
Query: 1240 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL 1299
+ E H+GH +T++ D ++R G+ + + G +
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTF---FLTGT-DEHGETVYRAAQA----- 62
Query: 1300 TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQ 1359
P A + K+ +D I + + +KK +++
Sbjct: 63 AGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRT------TEERHKKVVQLVLKKVYEAGD 116
Query: 1360 KIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPM 1413
Y E FY + +E + ++ +
Sbjct: 117 IYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWL 170
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 43.4 bits (101), Expect = 1e-04
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 215 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 257
++LV + P +H+GH+ I D R GH+V +
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI 45
Score = 43.4 bits (101), Expect = 1e-04
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 605 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 647
++LV + P +H+GH+ I D R GH+V +
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI 45
Score = 43.4 bits (101), Expect = 1e-04
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1232 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 1274
++LV + P +H+GH+ I D R GH+V +
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI 45
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS),
N-terminal 'additional' domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 39.0 bits (91), Expect = 7e-04
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 23/118 (19%)
Query: 88 RDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 147
R+Y+S + V + ++ TN + GD K N
Sbjct: 35 RNYISQELSKISGVDSSLIFP---ALEWTNTM---ERGDLLIPIPRLRIK-------GAN 81
Query: 148 PFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNG 204
P D+A + A ++K+E P F+ F + + + I DI+
Sbjct: 82 PKDLAV--------QWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRK 130
Score = 39.0 bits (91), Expect = 7e-04
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 23/118 (19%)
Query: 478 RDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 537
R+Y+S + V + ++ TN + GD K N
Sbjct: 35 RNYISQELSKISGVDSSLIFP---ALEWTNTM---ERGDLLIPIPRLRIK-------GAN 81
Query: 538 PFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNG 594
P D+A + A ++K+E P F+ F + + + I DI+
Sbjct: 82 PKDLAV--------QWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRK 130
Score = 39.0 bits (91), Expect = 7e-04
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 23/118 (19%)
Query: 1105 RDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 1164
R+Y+S + V + ++ TN + GD K N
Sbjct: 35 RNYISQELSKISGVDSSLIFP---ALEWTNTM---ERGDLLIPIPRLRIK-------GAN 81
Query: 1165 PFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNG 1221
P D+A + A ++K+E P F+ F + + + I DI+
Sbjct: 82 PKDLAV--------QWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRK 130
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 41.1 bits (95), Expect = 8e-04
Identities = 18/153 (11%), Positives = 39/153 (25%), Gaps = 5/153 (3%)
Query: 223 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT----QFGMLIAHLQDKF 278
P HVGH ++ D R G+ R G + + +
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKRE 106
Query: 279 PDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA-WEMICDVS 337
+ + +K ++ A +P Y ++ W + ++
Sbjct: 107 IEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLF 166
Query: 338 RRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 370
R ++ G + P+
Sbjct: 167 DRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPH 199
Score = 41.1 bits (95), Expect = 8e-04
Identities = 18/153 (11%), Positives = 39/153 (25%), Gaps = 5/153 (3%)
Query: 613 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT----QFGMLIAHLQDKF 668
P HVGH ++ D R G+ R G + + +
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKRE 106
Query: 669 PDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA-WEMICDVS 727
+ + +K ++ A +P Y ++ W + ++
Sbjct: 107 IEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLF 166
Query: 728 RRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 760
R ++ G + P+
Sbjct: 167 DRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPH 199
Score = 41.1 bits (95), Expect = 8e-04
Identities = 18/153 (11%), Positives = 39/153 (25%), Gaps = 5/153 (3%)
Query: 1240 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT----QFGMLIAHLQDKF 1295
P HVGH ++ D R G+ R G + + +
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKRE 106
Query: 1296 PDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA-WEMICDVS 1354
+ + +K ++ A +P Y ++ W + ++
Sbjct: 107 IEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLF 166
Query: 1355 RRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 1387
R ++ G + P+
Sbjct: 167 DRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPH 199
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 40.8 bits (94), Expect = 0.001
Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 18/152 (11%)
Query: 223 PNIAKEMHVGHLR-STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDK---- 277
P +H GHL + + D R L G DVV + + G I+ K
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVV---FICGT-DEHGTPISFRALKEGRS 66
Query: 278 ---FPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 334
D + I +A E I K + + + KK +
Sbjct: 67 PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAY 126
Query: 335 DVSRRDFQKIYDRLNVTLTERGESFYQKHMEQ 366
+ F + G +
Sbjct: 127 CEHDKMFLPDRFAIC------GRPISFRDSAH 152
Score = 40.8 bits (94), Expect = 0.001
Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 18/152 (11%)
Query: 613 PNIAKEMHVGHLR-STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDK---- 667
P +H GHL + + D R L G DVV + + G I+ K
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVV---FICGT-DEHGTPISFRALKEGRS 66
Query: 668 ---FPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 724
D + I +A E I K + + + KK +
Sbjct: 67 PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAY 126
Query: 725 DVSRRDFQKIYDRLNVTLTERGESFYQKHMEQ 756
+ F + G +
Sbjct: 127 CEHDKMFLPDRFAIC------GRPISFRDSAH 152
Score = 40.8 bits (94), Expect = 0.001
Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 18/152 (11%)
Query: 1240 PNIAKEMHVGHLR-STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDK---- 1294
P +H GHL + + D R L G DVV + + G I+ K
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVV---FICGT-DEHGTPISFRALKEGRS 66
Query: 1295 ---FPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 1351
D + I +A E I K + + + KK +
Sbjct: 67 PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAY 126
Query: 1352 DVSRRDFQKIYDRLNVTLTERGESFYQKHMEQ 1383
+ F + G +
Sbjct: 127 CEHDKMFLPDRFAIC------GRPISFRDSAH 152
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 37.6 bits (86), Expect = 0.010
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 3/116 (2%)
Query: 223 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN---HVGDWGTQFGMLIAHLQDKFP 279
P +H+GH + I+ D I R G + G Q + K
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMS 116
Query: 280 DYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICD 335
+ + KK F + + ++ + + + D
Sbjct: 117 TAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMAD 172
Score = 37.6 bits (86), Expect = 0.010
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 3/116 (2%)
Query: 613 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN---HVGDWGTQFGMLIAHLQDKFP 669
P +H+GH + I+ D I R G + G Q + K
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMS 116
Query: 670 DYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICD 725
+ + KK F + + ++ + + + D
Sbjct: 117 TAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMAD 172
Score = 37.6 bits (86), Expect = 0.010
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 3/116 (2%)
Query: 1240 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN---HVGDWGTQFGMLIAHLQDKFP 1296
P +H+GH + I+ D I R G + G Q + K
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMS 116
Query: 1297 DYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICD 1352
+ + KK F + + ++ + + + D
Sbjct: 117 TAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMAD 172
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 35.7 bits (81), Expect = 0.039
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 206 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 257
P K VLV F P + ++H+GHL++ +GD ++R G++V+
Sbjct: 27 DLPGGRGKQYVLVMF--PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHP 76
Score = 35.7 bits (81), Expect = 0.039
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 596 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 647
P K VLV F P + ++H+GHL++ +GD ++R G++V+
Sbjct: 27 DLPGGRGKQYVLVMF--PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHP 76
Score = 35.7 bits (81), Expect = 0.039
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1223 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 1274
P K VLV F P + ++H+GHL++ +GD ++R G++V+
Sbjct: 27 DLPGGRGKQYVLVMF--PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHP 76
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 30.7 bits (68), Expect = 1.4
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 23/92 (25%)
Query: 761 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 820
LEK GLL + +I+ G L + + +
Sbjct: 44 LEKAGLLTKAEMDQILHG-----------------------LDKVAEEWAQGTFKLNSND 80
Query: 821 TDLGQGVHFRLLEECAKKAGILNPNKTRMDFV 852
D+ RL E AG L+ ++R D V
Sbjct: 81 EDIHTANERRLKELIGATAGKLHTGRSRNDQV 112
>d2ff4a1 a.4.6.1 (A:10-104) Probable regulatory protein EmbR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 95
Score = 28.8 bits (64), Expect = 1.5
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 967 DLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFS 1022
L++ TPV K+ A+ L+ + V D + L E S
Sbjct: 9 PLQMTIDGTPVPSGTPKQRAVLAMLVINRN--RPVGVDALITALWEEWPPSGARAS 62
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga
maritima [TaxId: 2336]}
Length = 149
Score = 29.5 bits (65), Expect = 1.9
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 361 QKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIE 420
+ H E +++ E+D + + S+ D + + I
Sbjct: 48 RIHAEIFRKMSDQENWDEVDS-----YLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAIS 102
Query: 421 EEKADWIVY-----VTDHRSYHQVLQAIAEEEKK 449
EK I+Y + + ++ I ++EK+
Sbjct: 103 VEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKE 136
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 29.0 bits (65), Expect = 4.8
Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 32/176 (18%)
Query: 270 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKR--AYQCVVALQRFDPDYK 327
+I +++ + P + F + + R +A D K
Sbjct: 179 IINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRK 238
Query: 328 KAWEMICDVSRRD-----------FQKIY-DRLNVTLTERGESFYQKHMEQ-LVPYLEKK 374
I + + Q + + + G S +Q + PY E
Sbjct: 239 AELNEIAKICSKVSGEGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQYMYPYYEND 298
Query: 375 G-----------------LLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLA 413
L +++ R + + G PM GG + D
Sbjct: 299 KNITDKFAQELIDCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGGQNSEGKDAT 354
Score = 29.0 bits (65), Expect = 4.8
Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 32/176 (18%)
Query: 660 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKR--AYQCVVALQRFDPDYK 717
+I +++ + P + F + + R +A D K
Sbjct: 179 IINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRK 238
Query: 718 KAWEMICDVSRRD-----------FQKIY-DRLNVTLTERGESFYQKHMEQ-LVPYLEKK 764
I + + Q + + + G S +Q + PY E
Sbjct: 239 AELNEIAKICSKVSGEGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQYMYPYYEND 298
Query: 765 G-----------------LLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLA 803
L +++ R + + G PM GG + D
Sbjct: 299 KNITDKFAQELIDCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGGQNSEGKDAT 354
Score = 29.0 bits (65), Expect = 4.8
Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 32/176 (18%)
Query: 1287 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKR--AYQCVVALQRFDPDYK 1344
+I +++ + P + F + + R +A D K
Sbjct: 179 IINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRK 238
Query: 1345 KAWEMICDVSRRD-----------FQKIY-DRLNVTLTERGESFYQKHMEQ-LVPYLEKK 1391
I + + Q + + + G S +Q + PY E
Sbjct: 239 AELNEIAKICSKVSGEGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQYMYPYYEND 298
Query: 1392 G-----------------LLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLA 1430
L +++ R + + G PM GG + D
Sbjct: 299 KNITDKFAQELIDCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGGQNSEGKDAT 354
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 27.2 bits (60), Expect = 5.9
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 780 DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKA 839
DR + + + + D A+R+ +E EK +IV + + +L + ++
Sbjct: 41 DRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIE---AIATDMLIQLEEEG 97
Query: 840 GILNPN 845
+ P
Sbjct: 98 LNVVPC 103
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 28.0 bits (61), Expect = 7.0
Identities = 20/146 (13%), Positives = 38/146 (26%), Gaps = 5/146 (3%)
Query: 242 TISRLL-EYLGHDVV----RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 296
T + L E + L GTQ G+ + D+
Sbjct: 17 TQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN 76
Query: 297 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 356
+ R L + + E ++ D + N ++
Sbjct: 77 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADALKKR 136
Query: 357 ESFYQKHMEQLVPYLEKKGLLELDDG 382
+ Y E +V + +K G+ D
Sbjct: 137 LAAYHAQTEPIVDFYKKTGIWAGVDA 162
Score = 28.0 bits (61), Expect = 7.0
Identities = 20/146 (13%), Positives = 38/146 (26%), Gaps = 5/146 (3%)
Query: 632 TISRLL-EYLGHDVV----RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 686
T + L E + L GTQ G+ + D+
Sbjct: 17 TQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN 76
Query: 687 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 746
+ R L + + E ++ D + N ++
Sbjct: 77 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADALKKR 136
Query: 747 ESFYQKHMEQLVPYLEKKGLLELDDG 772
+ Y E +V + +K G+ D
Sbjct: 137 LAAYHAQTEPIVDFYKKTGIWAGVDA 162
Score = 28.0 bits (61), Expect = 7.0
Identities = 20/146 (13%), Positives = 38/146 (26%), Gaps = 5/146 (3%)
Query: 1259 TISRLL-EYLGHDVV----RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 1313
T + L E + L GTQ G+ + D+
Sbjct: 17 TQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN 76
Query: 1314 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 1373
+ R L + + E ++ D + N ++
Sbjct: 77 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADALKKR 136
Query: 1374 ESFYQKHMEQLVPYLEKKGLLELDDG 1399
+ Y E +V + +K G+ D
Sbjct: 137 LAAYHAQTEPIVDFYKKTGIWAGVDA 162
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor,
MarR {Escherichia coli [TaxId: 562]}
Length = 138
Score = 27.3 bits (60), Expect = 7.5
Identities = 8/56 (14%), Positives = 16/56 (28%)
Query: 326 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 381
V R + V LT G + ++ + + L ++ L
Sbjct: 68 MLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTA 123
Score = 27.3 bits (60), Expect = 7.5
Identities = 8/56 (14%), Positives = 16/56 (28%)
Query: 716 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 771
V R + V LT G + ++ + + L ++ L
Sbjct: 68 MLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTA 123
Score = 27.3 bits (60), Expect = 7.5
Identities = 8/56 (14%), Positives = 16/56 (28%)
Query: 1343 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 1398
V R + V LT G + ++ + + L ++ L
Sbjct: 68 MLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTA 123
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 27.9 bits (60), Expect = 8.8
Identities = 38/280 (13%), Positives = 81/280 (28%), Gaps = 29/280 (10%)
Query: 629 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 688
+G I + L+ +V+ + T + +K P+ + + ++
Sbjct: 13 LGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQY 72
Query: 689 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDV-------SRRDFQKIYDRLNVT 741
+ + I K ++ + + + Q Y + +
Sbjct: 73 DLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLE 132
Query: 742 LTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSD 801
++ K+ +L G ++ K M + + +V G T D
Sbjct: 133 GENFVKALNPKYYIVRTAWLYGDG----NNFVKTMINLGKTHDELKVVHDQVGTPTSTVD 188
Query: 802 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEECAKKAGI---LNPNKTRMDFVGFGVVL 858
LA + ++ +EK + T G + E + GI + P T
Sbjct: 189 LARVVLKVIDEKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEE--------F 240
Query: 859 GEDRKKFKTRSGDTVKLSELL-------DEGLRRSLDKLK 891
K+ K L E L+ +D L+
Sbjct: 241 PRPAKRPKYSVLRNYMLELTTGDITREWKESLKEYIDLLQ 280
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,501,222
Number of extensions: 275278
Number of successful extensions: 895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 68
Length of query: 1458
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1361
Effective length of database: 1,075,786
Effective search space: 1464144746
Effective search space used: 1464144746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)