BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15415
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 3 LTANLRLFFHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNLS 57
+T N F +RFP+Y +N W+NS+RHNLS+N F K + + G G W L
Sbjct: 25 ITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLD 81
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 16 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDME 60
FPY+ +N WKN+VRHNLS++ +F V+ G +W + ++E
Sbjct: 38 FPYFRRNAATWKNAVRHNLSLHKYF---VRVENVKGAVWTVDEVE 79
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding
Domain Of Myocyte Nuclear Factor
Length = 101
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 16 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 65
+PYY D W+NS+RHNLS+N +F K ++ + G G W + S+ + VE A
Sbjct: 37 YPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 91
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD
DNA-Recognition Motif Resembles Histone H5
Length = 102
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL 56
FPYY +N RW+NS+RH+LS N F K ++ G G W L
Sbjct: 37 FPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWAL 79
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis,
20 Structures
Length = 109
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 11 FHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNL 56
F RFPYY + W+NS+RHNLS+N F K + + G G+ W L
Sbjct: 32 FISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTL 79
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 16 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 65
+PYY D W+NS+RHNLS+N +F K ++ + G G W + S+ + +E A
Sbjct: 50 YPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQA 104
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 11 FHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNL 56
F RFPYY + W+NS+RHNLS+N F K + + G G+ W L
Sbjct: 31 FISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTL 78
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 16 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL 56
+PYY D W+NS+RHNLS+N +F K ++ + G G W +
Sbjct: 37 YPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRI 79
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 16 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDME 60
F Y+ +N WKN+VRHNLS++ F V+ G +W + ++E
Sbjct: 37 FAYFRRNAATWKNAVRHNLSLHKCF---VRVENVKGAVWTVDEVE 78
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 16 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDME 60
F ++ + WKN++RHNLS++ F V+ G +W + ++E
Sbjct: 36 FAFFRNHPATWKNAIRHNLSLHKCF---VRVESEKGAVWTVDELE 77
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 15 RFPYYNQNDDRWKNSVRHNLSINPHFRKGVK 45
+FP++ + W+NSVRHNLS+N F K ++
Sbjct: 35 KFPFFRGSYTGWRNSVRHNLSLNDCFVKVLR 65
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 16 FPYYNQNDDR-----WKNSVRHNLSINPHFRKGVKASQGAGHLWNL 56
PY+ D WKNS+RHNLS++ F K + G W L
Sbjct: 58 VPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWML 103
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 16 FPYYNQNDDR-----WKNSVRHNLSINPHFRKGVKASQGAGHLWNL 56
PY+ D WKNS+RHNLS++ F K + G W L
Sbjct: 74 VPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWML 119
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 17 PYYNQNDDR-----WKNSVRHNLSINPHFRKGVKASQGAGHLWNL 56
PY+ D WKNS+RHNLS++ F + G W L
Sbjct: 46 PYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGTGKSSWWML 90
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 16 FPYYNQNDDR-----WKNSVRHNLSINPHFRKGVKASQGAGHLW 54
PY+ D WKNS+RHNLS++ F + G W
Sbjct: 35 VPYFKDKGDSNSSAGWKNSIRHNLSLHSRFMRVQNEGTGKSSWW 78
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 17 PYYNQNDDR-----WKNSVRHNLSINPHFRKGVKASQGAGHLWNL 56
PY+ D WKNS+RHNLS++ F + G W L
Sbjct: 46 PYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGTGKSSWWML 90
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 14 ERFPYYNQ-NDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNL 56
+ FPY+ WKNS+RHNLS++ F + A+ G W +
Sbjct: 50 DHFPYFKHIAKPGWKNSIRHNLSLHDMFVRETSAN-GKVSFWTI 92
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 16 FPYYNQNDDR-----WKNSVRHNLSINPHFRKGVKASQGAGHLW 54
PY+ D WKNS+RHNLS++ F + G W
Sbjct: 43 VPYFKDKGDSNSSAGWKNSIRHNLSLHSRFMRVQNEGTGKSSWW 86
>pdb|3CAZ|A Chain A, Crystal Structure Of A Bar Protein From Galdieria
Sulphuraria
pdb|3CAZ|B Chain B, Crystal Structure Of A Bar Protein From Galdieria
Sulphuraria
Length = 294
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 19 YNQNDDRWKNSVRHNLSINPHFRKG----VKASQGAGHLWNLSDMEPVED 64
Y+ N+++ +NS + N +I P FR + S+ + N S+ P ED
Sbjct: 242 YHTNEEKVENSFQKNSAIPPSFRTASEQLTEQSKNINNAKNTSETSPAED 291
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 169 RLYTKAES--YFQTGTDQFKESIRHNLVLN 196
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 169 RLYTKAES--YFQTGTDQFKESIRHNLVLN 196
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 18 YYNQNDDRWKNSVRHNLSIN 37
Y+ D++K S+RHNL +N
Sbjct: 205 YFQTGTDQFKESIRHNLVLN 224
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 197 RLYTKAES--YFQTGTDQFKESIRHNLVLN 224
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 RLFFHRERFPYYNQNDDRWKNSVRHNLSIN 37
RL+ E Y+ D++K S+RHNL +N
Sbjct: 196 RLYTKAES--YFQTGTDQFKESIRHNLVLN 223
>pdb|3CEA|A Chain A, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|B Chain B, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|C Chain C, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|D Chain D, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
Length = 346
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 65 ASKSNWVSIKVTGVKRTGWLAFGYYSERPKYDMLNTSGVLRTCMCNSNETY 115
A+ N V ++V G GW+ G + + + + N GV+R + + E +
Sbjct: 246 AAHGNQVELEVXG--SNGWVRIGEHPDLNRVTVFNDQGVVRPSLQSFGERF 294
>pdb|2XDQ|A Chain A, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
Chlb)2 Complex
Length = 460
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 71 VSIKVTGVKRTGWLAFGYYSERPKYDMLNTSGVLRTCMCNSNETYMLCRKCK 122
+ +K G+K +GWL Y+E P D + + + T + RKC+
Sbjct: 215 LELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLSRTATTLIRRRKCQ 266
>pdb|2IC7|A Chain A, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2IC7|B Chain B, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2IC7|C Chain C, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2P2O|A Chain A, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|B Chain B, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|C Chain C, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|D Chain D, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|E Chain E, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|F Chain F, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
Length = 185
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 50 AGHLWNLSDMEPVEDASKSNWV------SIKVTGVKRTGWLA--FGYYSER 92
AGHL+N +D+E V++ ++ + +++ KRTG L FG ER
Sbjct: 10 AGHLYNPADLELVKERERARRLVRLYNETLETEYDKRTGLLKELFGSTGER 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,072,544
Number of Sequences: 62578
Number of extensions: 153850
Number of successful extensions: 390
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 47
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)